BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027563
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P27189|TRAC4_ECOLX DNA primase TraC OS=Escherichia coli GN=traC PE=1 SV=1
Length = 1061
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 27 LKFKDSTQQQSWLRQAPNPPSSPTTRAKKKQLA-VAVAVQEPLLASTSALIEHINNLDQN 85
L F+ Q+ +QA P T ++ Q+A A+A + L+A T + +
Sbjct: 292 LAFEQKQIQEQTTQQAIEPAQGATMEQQQDQVARPAIAPADELIAQTLRMYRAGAEPAEG 351
Query: 86 RQSLYLLAESTAGYSLASYYT 106
QSL L E+T G+ L + +T
Sbjct: 352 NQSLAALTETTLGFELPADWT 372
>sp|Q6CLQ8|GEP3_KLULA Genetic interactor of prohibitins 3, mitochondrial OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=GEP3 PE=3 SV=2
Length = 550
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 160 NFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILS 219
N+++ + + IT++ M+P +G A F FC V V+ + P NW ++++
Sbjct: 148 NYLLLSKADQITYKSSMLPHKGSAFFAEFCRRHIGVHVKKVVLFSNP---RNWNIPSVIN 204
Query: 220 PLA 222
LA
Sbjct: 205 ALA 207
>sp|P04825|AMPN_ECOLI Aminopeptidase N OS=Escherichia coli (strain K12) GN=pepN PE=1 SV=2
Length = 870
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 13 PTPQLLCSFSLHSKLKFKDSTQQQSWL-RQAPN 44
P P LLC FS KL++K S QQ ++L R A N
Sbjct: 528 PVPALLCEFSAPVKLEYKWSDQQLTFLMRHARN 560
>sp|P19328|ADA2B_RAT Alpha-2B adrenergic receptor OS=Rattus norvegicus GN=Adra2b PE=2
SV=2
Length = 453
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 83 DQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESK 142
+ N+++ Y+LA S + S++ + ++ ++ + KRS + K GEGESK
Sbjct: 170 ELNQEAWYILASS-----IGSFFAPCLIMILVYLRIYVIAKRSHCRGLGAKRGSGEGESK 224
Query: 143 KAPNQVAGEI 152
K P VAG +
Sbjct: 225 K-PQPVAGGV 233
>sp|B7N9U0|ATKB_ECOLU Potassium-transporting ATPase B chain OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=kdpB PE=3 SV=1
Length = 682
Score = 30.4 bits (67), Expect = 8.8, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 183 AAFLTFCTCISLASVALVLTITYPDIGNNWFWITIL 218
+ LT C CI++AS A+ + + W W+T+L
Sbjct: 42 GSLLTTCICIAMASGAMPGNALFSAAISGWLWVTVL 77
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,637,036
Number of Sequences: 539616
Number of extensions: 2815183
Number of successful extensions: 8397
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8373
Number of HSP's gapped (non-prelim): 32
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)