Query 027563
Match_columns 222
No_of_seqs 73 out of 75
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 20:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ose_A Serine/threonine-protei 59.4 4.8 0.00017 31.0 2.3 52 126-177 20-85 (120)
2 3lh2_S 4E10_1VI7A_S0_002_N (T8 43.5 31 0.0011 23.6 4.1 34 147-180 17-52 (76)
3 2ks1_B Epidermal growth factor 42.5 30 0.001 23.1 3.8 33 96-128 9-41 (44)
4 2gjh_A Designed protein; oblig 41.6 28 0.00096 24.8 3.7 43 135-177 6-51 (62)
5 1t1e_A Kumamolisin; proenzyme, 39.4 25 0.00086 32.9 4.1 34 144-177 83-119 (552)
6 2kng_A Protein LSR2; DNA-bindi 38.5 15 0.00051 26.0 1.8 20 149-168 15-34 (55)
7 3bgh_A Protein HPAA, putative 38.5 18 0.00062 31.8 2.8 21 145-165 61-81 (236)
8 2jwa_A Receptor tyrosine-prote 38.4 22 0.00074 24.0 2.5 24 105-128 18-41 (44)
9 2i9i_A Hypothetical protein; P 36.1 22 0.00074 31.7 2.9 21 145-165 70-90 (254)
10 2ehb_D CBL-interacting serine/ 33.7 86 0.003 24.8 5.8 40 133-176 36-75 (143)
11 2l2t_A Receptor tyrosine-prote 30.8 32 0.0011 23.0 2.4 27 102-128 14-40 (44)
12 1iij_A ERBB-2 receptor protein 30.5 29 0.001 22.4 2.1 18 108-125 17-34 (35)
13 1bcp_D Pertussis toxin; ADP-ri 23.3 97 0.0033 24.0 4.2 34 142-177 61-94 (110)
14 3edy_A Tripeptidyl-peptidase 1 23.3 69 0.0024 30.2 4.1 34 144-177 72-108 (544)
15 2l48_A N-acetylmuramoyl-L-alan 23.1 62 0.0021 24.5 3.0 19 144-162 63-81 (85)
16 3q0w_A HTH-type transcriptiona 21.4 33 0.0011 26.2 1.3 21 87-108 65-85 (236)
17 4ftf_A Alternate secretin path 20.8 20 0.00069 28.4 -0.1 42 116-157 29-72 (112)
18 1x9z_A DNA mismatch repair pro 20.8 1.7E+02 0.0057 23.2 5.3 47 129-175 51-99 (188)
19 3rmt_A 3-phosphoshikimate 1-ca 20.3 2.5E+02 0.0085 25.7 7.0 41 152-192 200-249 (455)
No 1
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=59.42 E-value=4.8 Score=30.96 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=37.4
Q ss_pred cccceeeeEEEeecCCCCChhHHHHHHHHHhhhcCeeeecC--------------CeEEEEEEeec
Q 027563 126 VKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDR--------------GEVITFEGMMV 177 (222)
Q Consensus 126 ~KDRieqrT~vv~~~s~~p~~evl~~L~~yF~~R~Y~V~~~--------------~evITFEG~V~ 177 (222)
+|-|..+-++.+...|.++|++++++|.+=++++|.+.... ++.+.||-.|-
T Consensus 20 ~kPR~lk~~~~v~tTS~~~P~eIm~eI~rvL~~~gi~~~~~g~y~l~C~~~~~~~~~~v~fElEVc 85 (120)
T 3ose_A 20 SKPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQWEMEVC 85 (120)
T ss_dssp -CCCBCCCCTTCCCEECSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCTTTTCCEEEEEEEE
T ss_pred CCCcEEeceeeecCcccCCHHHHHHHHHHHHHHCCCEEEEcCCEEEEEEecCCCCCccEEEEEEEE
Confidence 44455555566666788999999999999999887655541 24788888764
No 2
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=43.45 E-value=31 Score=23.59 Aligned_cols=34 Identities=3% Similarity=0.022 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhcCeeeecCC--eEEEEEEeecCch
Q 027563 147 QVAGEIFSFFTRNNFVVTDRG--EVITFEGMMVPSR 180 (222)
Q Consensus 147 evl~~L~~yF~~R~Y~V~~~~--evITFEG~V~pS~ 180 (222)
..++.++.+++++|+++.+.+ +.|++.-.|.++.
T Consensus 17 ~~~g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~ 52 (76)
T 3lh2_S 17 FDITGILWLLGQVDGKIINSDVQAFVLLRVALPAAK 52 (76)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-C
T ss_pred cCHHHHHHHHHHCCCEEEcccccCeEEEEEEECHHH
Confidence 467899999999999999965 6799998888765
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=42.51 E-value=30 Score=23.05 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=23.0
Q ss_pred cCCcchhhHHHHHHHHHHHhhhHhhhhhhcccc
Q 027563 96 TAGYSLASYYTSLGLFVISVPGLWSLIKRSVKS 128 (222)
Q Consensus 96 ~~g~s~aSyySTLlLTLLlaiGL~FFIRAS~KD 128 (222)
..+-....-...+++.++.+.+.|||+|+-.+.
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 334455565666777778888889999986554
No 4
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=41.61 E-value=28 Score=24.78 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=31.8
Q ss_pred EEeecCCCCChhHHHHHHHHHhhhcCeee---ecCCeEEEEEEeec
Q 027563 135 FVGEGESKKAPNQVAGEIFSFFTRNNFVV---TDRGEVITFEGMMV 177 (222)
Q Consensus 135 ~vv~~~s~~p~~evl~~L~~yF~~R~Y~V---~~~~evITFEG~V~ 177 (222)
......-++..+..+.-+..-|..-||.- +-.|+++|-||+..
T Consensus 6 isitartkkeaekfaailikvfaelgyndinvtwdgdtvtvegqle 51 (62)
T 2gjh_A 6 ISITARTKKEAEKFAAILIKVFAELGYNDINVTWDGDTVTVEGQLE 51 (62)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTTCCSCEEEECSSCEEEEEECC
T ss_pred EEEEecchhHHHHHHHHHHHHHHHhCcccceeEEcCCEEEEEeEEc
Confidence 33333445567778888888999989864 44889999999875
No 5
>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A
Probab=39.42 E-value=25 Score=32.95 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=29.0
Q ss_pred ChhHHHHHHHHHhhhcCeeeec---CCeEEEEEEeec
Q 027563 144 APNQVAGEIFSFFTRNNFVVTD---RGEVITFEGMMV 177 (222)
Q Consensus 144 p~~evl~~L~~yF~~R~Y~V~~---~~evITFEG~V~ 177 (222)
|.++-.+.+.+||+++|.++.. .+..|+|+|.|.
T Consensus 83 ps~~~v~~V~~wL~~~G~~~~~~~~~~~~i~~~gtv~ 119 (552)
T 1t1e_A 83 ASLDDFAEIRKFAEAHGLTLDRAHVAAGTAVLSGPVD 119 (552)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEETTTTEEEEEEEHH
T ss_pred cCHHHHHHHHHHHHHCCCceeEEecCCCEEEEEeEHH
Confidence 5577789999999999998876 458999999874
No 6
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=38.51 E-value=15 Score=25.95 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=18.2
Q ss_pred HHHHHHHhhhcCeeeecCCe
Q 027563 149 AGEIFSFFTRNNFVVTDRGE 168 (222)
Q Consensus 149 l~~L~~yF~~R~Y~V~~~~e 168 (222)
..+|.+|-+.+||.|.++|.
T Consensus 15 ~~aIR~WAr~nG~~VsdRGR 34 (55)
T 2kng_A 15 SAAIREWARRNGHNVSTRGR 34 (55)
T ss_dssp HHHHHHHHHHTTCCCCSSSC
T ss_pred hHHHHHHHHHcCCcCCCCCC
Confidence 67999999999999999873
No 7
>3bgh_A Protein HPAA, putative neuraminyllactose-binding hemagglutinin; structural genomics, unknown function, PSI-2, protein struct initiative; 2.45A {Helicobacter pylori}
Probab=38.51 E-value=18 Score=31.85 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhhhcCeeeec
Q 027563 145 PNQVAGEIFSFFTRNNFVVTD 165 (222)
Q Consensus 145 ~~evl~~L~~yF~~R~Y~V~~ 165 (222)
.++++.||++-|++|||+|..
T Consensus 61 ~~al~~qIq~il~krGY~v~~ 81 (236)
T 3bgh_A 61 EKSLFLQLSSFLERKGYSVSQ 81 (236)
T ss_dssp HHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHhCCceEee
Confidence 478999999999999999987
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=38.39 E-value=22 Score=23.96 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhhHhhhhhhcccc
Q 027563 105 YTSLGLFVISVPGLWSLIKRSVKS 128 (222)
Q Consensus 105 ySTLlLTLLlaiGL~FFIRAS~KD 128 (222)
...+++.++++.++++|+||.-..
T Consensus 18 vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHhheehhhhh
Confidence 334778889999999999987554
No 9
>2i9i_A Hypothetical protein; PSI-2 structural genomics, protein structure initiative, NEW research center for structural genomics, nysgxrc; 1.80A {Helicobacter pylori} SCOP: c.51.6.1
Probab=36.07 E-value=22 Score=31.68 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhhhcCeeeec
Q 027563 145 PNQVAGEIFSFFTRNNFVVTD 165 (222)
Q Consensus 145 ~~evl~~L~~yF~~R~Y~V~~ 165 (222)
.++++.+|++-|++|||+|..
T Consensus 70 ~~aL~~qIq~il~krGY~v~~ 90 (254)
T 2i9i_A 70 QDALINQIQTIFEKRGYQVLR 90 (254)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhCCceEEe
Confidence 578999999999999999986
No 10
>2ehb_D CBL-interacting serine/threonine-protein kinase 2; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana}
Probab=33.66 E-value=86 Score=24.77 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=34.7
Q ss_pred eEEEeecCCCCChhHHHHHHHHHhhhcCeeeecCCeEEEEEEee
Q 027563 133 KTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMM 176 (222)
Q Consensus 133 rT~vv~~~s~~p~~evl~~L~~yF~~R~Y~V~~~~evITFEG~V 176 (222)
..|.+.. |+.++++.|.+--+.-||+|.-.+..++.||..
T Consensus 36 tRF~s~~----~a~~ii~klEe~a~~lg~~V~kk~~~vkl~~~~ 75 (143)
T 2ehb_D 36 TRFVSRR----EPSEIIANIEAVANSMGFKSHTRNFKTRLEGLS 75 (143)
T ss_dssp CEEEECS----CHHHHHHHHHHHHHHTTEEEEESSSEEEEEECC
T ss_pred ceEEeCC----CHHHHHHHHHHHHHhcCcEEEEcCcEEEEEEec
Confidence 4666666 999999999999999999999988888898853
No 11
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=30.81 E-value=32 Score=23.03 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHhhhHhhhhhhcccc
Q 027563 102 ASYYTSLGLFVISVPGLWSLIKRSVKS 128 (222)
Q Consensus 102 aSyySTLlLTLLlaiGL~FFIRAS~KD 128 (222)
..-..-+++.++.+.+.|||+|+--+.
T Consensus 14 ~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334445667777788889999986554
No 12
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=30.49 E-value=29 Score=22.38 Aligned_cols=18 Identities=44% Similarity=0.410 Sum_probs=16.4
Q ss_pred HHHHHHHhhhHhhhhhhc
Q 027563 108 LGLFVISVPGLWSLIKRS 125 (222)
Q Consensus 108 LlLTLLlaiGL~FFIRAS 125 (222)
++++++++.+.++++||.
T Consensus 17 lll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 17 VLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHTTTTTHHHHHC
T ss_pred HHHHHHHHHHhheEEeec
Confidence 899999999999999984
No 13
>1bcp_D Pertussis toxin; ADP-ribosyltransferase, transferase, whooping cough; HET: ATP; 2.70A {Bordetella pertussis} SCOP: b.40.2.1 PDB: 1prt_D 1pto_D*
Probab=23.28 E-value=97 Score=23.99 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=24.8
Q ss_pred CCChhHHHHHHHHHhhhcCeeeecCCeEEEEEEeec
Q 027563 142 KKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMV 177 (222)
Q Consensus 142 ~~p~~evl~~L~~yF~~R~Y~V~~~~evITFEG~V~ 177 (222)
.-|.+-+++. -|+++|-.|.--+-+++||||.-+
T Consensus 61 sspmevmlra--vfmqqrplrmflgpkqltfegkpa 94 (110)
T 1bcp_D 61 SSPMEVMLRA--VFMQQRPLRMFLGPKQLTFEGKPA 94 (110)
T ss_dssp CCHHHHHHHH--HHHHTCCEEEEEEEEEEEETTEEE
T ss_pred CChHHHHHHH--HHHhhcchhhhcCcceeeecCchH
Confidence 3334444444 378999999988899999999743
No 14
>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A*
Probab=23.26 E-value=69 Score=30.22 Aligned_cols=34 Identities=3% Similarity=-0.087 Sum_probs=28.7
Q ss_pred ChhHHHHHHHHHhhhcCeeeec---CCeEEEEEEeec
Q 027563 144 APNQVAGEIFSFFTRNNFVVTD---RGEVITFEGMMV 177 (222)
Q Consensus 144 p~~evl~~L~~yF~~R~Y~V~~---~~evITFEG~V~ 177 (222)
|.++-.+.+.+||++.|.++.. .++.|+|+|.|.
T Consensus 72 Ps~~~v~aV~~WL~~~Gi~~~~~~~~~~~I~~~~tv~ 108 (544)
T 3edy_A 72 PSPLTLHTVQKWLLAAGAQKCHSVITQDFLTCWLSIR 108 (544)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTSCEEEEEEEHH
T ss_pred CCHHHHHHHHHHHHHcCCCceeEecCCCEEEEEEEHH
Confidence 6678889999999999997643 668999999884
No 15
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=23.06 E-value=62 Score=24.50 Aligned_cols=19 Identities=5% Similarity=0.223 Sum_probs=15.4
Q ss_pred ChhHHHHHHHHHhhhcCee
Q 027563 144 APNQVAGEIFSFFTRNNFV 162 (222)
Q Consensus 144 p~~evl~~L~~yF~~R~Y~ 162 (222)
-++.-++.+.+||.+|+|=
T Consensus 63 ~s~~eLdk~t~wLD~rgWw 81 (85)
T 2l48_A 63 TSDAQLKAMKEYLDRKGWW 81 (85)
T ss_dssp CCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHhccCce
Confidence 3456789999999999973
No 16
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=21.45 E-value=33 Score=26.19 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=15.2
Q ss_pred chhhhhhhccCCcchhhHHHHH
Q 027563 87 QSLYLLAESTAGYSLASYYTSL 108 (222)
Q Consensus 87 ~~~~~~~~~~~g~s~aSyySTL 108 (222)
-++=.+++.. |.|+.++|-=|
T Consensus 65 ~t~~~IA~~a-Gvs~~tlY~~F 85 (236)
T 3q0w_A 65 ISVDDLAKGA-GISRPTFYFYF 85 (236)
T ss_dssp CCHHHHHHHH-TCCHHHHHHHC
T ss_pred CCHHHHHHHh-CCcHHHHHHHC
Confidence 4666677766 89988888643
No 17
>4ftf_A Alternate secretin pathway subunit S (VC395_1821,; pilotin, lipoprotein, protein secretion, pfamb PB0 secretin binding, outer membrane; 1.48A {Vibrio cholerae}
Probab=20.82 E-value=20 Score=28.44 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=34.1
Q ss_pred hhHhhhhhhccccceeeeEEEe--ecCCCCChhHHHHHHHHHhh
Q 027563 116 PGLWSLIKRSVKSKIVQKTFVG--EGESKKAPNQVAGEIFSFFT 157 (222)
Q Consensus 116 iGL~FFIRAS~KDRieqrT~vv--~~~s~~p~~evl~~L~~yF~ 157 (222)
.|=....||++|.-++.-+.+. ++.+.+|++++++.-...|=
T Consensus 29 ~gpl~ImrA~A~g~~VEimmiYn~~~~ga~p~~qvl~~s~~tyC 72 (112)
T 4ftf_A 29 FGPLNILRATAKGSTVELMMVYNTDANNAKPTEQVLQSAVSSFC 72 (112)
T ss_dssp ETTEEEEEEEEETTEEEEEEECCTTSTTCCCHHHHHHHHHHHHH
T ss_pred cCceeeeeeccCCCeEEEEEEEeCCCCCCCCHHHHHHHHHHHHc
Confidence 4666789999999999999998 55789999999987555543
No 18
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=20.82 E-value=1.7e+02 Score=23.18 Aligned_cols=47 Identities=6% Similarity=0.029 Sum_probs=33.5
Q ss_pred ceeeeEEEeecCCC--CChhHHHHHHHHHhhhcCeeeecCCeEEEEEEe
Q 027563 129 KIVQKTFVGEGESK--KAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGM 175 (222)
Q Consensus 129 RieqrT~vv~~~s~--~p~~evl~~L~~yF~~R~Y~V~~~~evITFEG~ 175 (222)
++....+.++..-. ..+.+++.+..+.|++.|+.+...|+.++-++.
T Consensus 51 ~~~~Q~LL~P~~l~ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~~~v~~v 99 (188)
T 1x9z_A 51 PVCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQSDAQHVTIRAV 99 (188)
T ss_dssp CCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHTTCEEEECSSEEEEEEE
T ss_pred CCCcccCCCCEEEEeCHHHHHHHHHHHHHHHhCCcEEEEcCCcEEEEec
Confidence 35556666665333 345677899999999999999985543777765
No 19
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=20.25 E-value=2.5e+02 Score=25.67 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=32.4
Q ss_pred HHHHhhhcCeeeecCCeEEEEEEe---------ecCchHHHHHHHHHHHH
Q 027563 152 IFSFFTRNNFVVTDRGEVITFEGM---------MVPSRGQAAFLTFCTCI 192 (222)
Q Consensus 152 L~~yF~~R~Y~V~~~~evITFEG~---------V~pS~fLAiFLTfLaai 192 (222)
+.+++++-|.+|...+++++-+|. |.+.+..|.|.-..+++
T Consensus 200 t~~~L~~~Ga~i~~~g~~i~I~g~~~l~~~~~~V~~D~s~Aa~~l~aaai 249 (455)
T 3rmt_A 200 TERMLEAFGVNIEKDGLTVSIEGGQMLTGQHVVVPGDISSAAFFLVAGAM 249 (455)
T ss_dssp HHHHHHHTTCCEEEETTEEEECSCCCCBCCEEECCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEecCCEEEEcCCccccCCeeECCCCHHHHHHHHHHHHh
Confidence 668999999999887788887763 67788888877666665
Done!