Query 027566
Match_columns 222
No_of_seqs 241 out of 771
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 11:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2967 ApaG Uncharacterized p 99.9 1.1E-23 2.4E-28 170.1 8.0 62 160-221 2-63 (126)
2 PRK05461 apaG CO2+/MG2+ efflux 99.9 1.6E-23 3.4E-28 170.1 9.0 63 159-221 2-64 (127)
3 PF04379 DUF525: Protein of un 99.7 8.1E-18 1.8E-22 129.5 5.6 47 175-221 1-47 (90)
4 KOG4408 Putative Mg2+ and Co2+ 99.5 2.6E-14 5.7E-19 132.6 7.2 65 157-221 248-313 (386)
5 COG3880 Modulator of heat shoc 99.2 1.4E-11 3E-16 105.0 6.2 67 75-150 89-168 (176)
6 PF02151 UVR: UvrB/uvrC motif; 98.2 1.8E-06 3.9E-11 56.1 3.2 31 120-150 4-34 (36)
7 COG3880 Modulator of heat shoc 97.9 1E-05 2.2E-10 69.5 4.3 45 74-118 127-171 (176)
8 PF02151 UVR: UvrB/uvrC motif; 97.7 5.9E-05 1.3E-09 48.9 3.9 33 83-115 2-34 (36)
9 PRK07883 hypothetical protein; 96.0 0.0082 1.8E-07 59.2 4.6 44 107-150 393-438 (557)
10 PRK00558 uvrC excinuclease ABC 95.9 0.0098 2.1E-07 59.3 4.8 50 99-150 183-234 (598)
11 PRK05298 excinuclease ABC subu 95.8 0.023 5E-07 56.9 6.7 33 118-150 613-645 (652)
12 PRK14666 uvrC excinuclease ABC 95.7 0.014 3.1E-07 59.4 5.0 50 99-150 182-233 (694)
13 PRK12306 uvrC excinuclease ABC 95.7 0.016 3.4E-07 57.2 5.0 50 99-150 173-224 (519)
14 TIGR00194 uvrC excinuclease AB 95.6 0.017 3.8E-07 57.4 5.0 43 108-150 182-226 (574)
15 PRK14670 uvrC excinuclease ABC 95.5 0.015 3.3E-07 58.0 4.4 50 99-150 158-209 (574)
16 TIGR00631 uvrb excinuclease AB 95.5 0.018 3.9E-07 57.9 5.0 32 119-150 624-655 (655)
17 PRK14669 uvrC excinuclease ABC 95.5 0.017 3.6E-07 58.2 4.5 50 99-150 184-235 (624)
18 PRK14671 uvrC excinuclease ABC 95.5 0.019 4.2E-07 57.6 4.9 50 99-150 196-247 (621)
19 PRK14672 uvrC excinuclease ABC 95.4 0.02 4.3E-07 58.3 4.9 39 112-150 197-237 (691)
20 PRK14667 uvrC excinuclease ABC 95.4 0.022 4.9E-07 56.6 4.9 43 108-150 187-231 (567)
21 PRK14668 uvrC excinuclease ABC 95.3 0.024 5.1E-07 56.5 5.0 37 114-150 193-231 (577)
22 COG0556 UvrB Helicase subunit 94.9 0.034 7.4E-07 55.8 4.7 32 120-151 626-657 (663)
23 COG0322 UvrC Nuclease subunit 94.5 0.042 9.2E-07 55.0 4.4 49 99-150 183-234 (581)
24 KOG4825 Component of synaptic 94.0 0.067 1.5E-06 52.9 4.5 68 83-150 171-239 (666)
25 PF11611 DUF4352: Domain of un 93.4 0.54 1.2E-05 35.8 7.7 59 161-219 7-69 (123)
26 COG0556 UvrB Helicase subunit 92.4 0.15 3.3E-06 51.3 4.1 39 77-115 618-656 (663)
27 TIGR00631 uvrb excinuclease AB 92.0 0.19 4.1E-06 50.7 4.5 34 82-115 622-655 (655)
28 PRK05298 excinuclease ABC subu 90.7 0.28 6.1E-06 49.2 4.2 33 83-115 613-645 (652)
29 PRK07883 hypothetical protein; 90.5 0.33 7.2E-06 48.1 4.3 30 82-111 405-434 (557)
30 PRK00558 uvrC excinuclease ABC 90.3 0.35 7.6E-06 48.4 4.4 34 82-115 201-234 (598)
31 PRK12306 uvrC excinuclease ABC 87.9 0.55 1.2E-05 46.5 3.8 34 82-115 191-224 (519)
32 PRK14666 uvrC excinuclease ABC 87.7 0.59 1.3E-05 48.0 3.9 33 82-114 200-232 (694)
33 PF15469 Sec5: Exocyst complex 87.5 2.5 5.5E-05 35.2 7.0 51 99-149 65-115 (182)
34 PRK14668 uvrC excinuclease ABC 86.8 0.68 1.5E-05 46.4 3.8 34 82-115 198-231 (577)
35 PRK14669 uvrC excinuclease ABC 86.5 0.75 1.6E-05 46.6 3.9 34 82-115 202-235 (624)
36 PRK14672 uvrC excinuclease ABC 86.4 0.89 1.9E-05 46.7 4.4 34 82-115 204-237 (691)
37 PRK14671 uvrC excinuclease ABC 86.4 0.89 1.9E-05 45.9 4.4 34 82-115 214-247 (621)
38 PRK14667 uvrC excinuclease ABC 86.3 0.79 1.7E-05 45.9 3.9 34 82-115 198-231 (567)
39 PRK14670 uvrC excinuclease ABC 86.0 0.83 1.8E-05 45.8 3.9 34 82-115 176-209 (574)
40 TIGR00194 uvrC excinuclease AB 85.6 0.87 1.9E-05 45.6 3.8 34 82-115 193-226 (574)
41 PF14263 DUF4354: Domain of un 84.7 3 6.6E-05 34.4 6.0 60 159-218 20-79 (124)
42 PF07743 HSCB_C: HSCB C-termin 84.1 6.5 0.00014 28.5 7.0 59 84-147 9-67 (78)
43 COG0322 UvrC Nuclease subunit 83.6 1.2 2.6E-05 44.8 3.8 32 83-114 202-233 (581)
44 PF06476 DUF1090: Protein of u 80.2 8 0.00017 31.2 6.7 74 75-148 16-107 (115)
45 PF14559 TPR_19: Tetratricopep 79.2 10 0.00022 25.5 6.1 57 95-152 1-57 (68)
46 TIGR00714 hscB Fe-S protein as 68.6 26 0.00057 29.3 7.2 63 81-148 79-141 (157)
47 PF09577 Spore_YpjB: Sporulati 68.1 27 0.00059 31.5 7.7 68 83-150 3-89 (232)
48 PRK01773 hscB co-chaperone Hsc 67.3 24 0.00052 30.2 6.8 61 83-148 95-155 (173)
49 PF13432 TPR_16: Tetratricopep 64.4 39 0.00084 22.5 6.3 60 93-153 5-64 (65)
50 PF04420 CHD5: CHD5-like prote 61.4 28 0.00061 29.1 6.1 46 81-135 45-90 (161)
51 PRK03578 hscB co-chaperone Hsc 61.3 40 0.00087 28.8 7.1 61 83-148 98-159 (176)
52 PRK05014 hscB co-chaperone Hsc 60.1 44 0.00096 28.3 7.1 61 83-148 93-154 (171)
53 PF07064 RIC1: RIC1; InterPro 60.0 45 0.00098 30.2 7.6 65 89-153 183-253 (258)
54 PF14276 DUF4363: Domain of un 56.3 89 0.0019 24.4 7.8 69 81-149 24-110 (121)
55 TIGR02878 spore_ypjB sporulati 52.9 91 0.002 28.4 8.2 68 83-150 3-90 (233)
56 PF04880 NUDE_C: NUDE protein, 47.8 19 0.00041 31.1 3.0 14 85-98 2-15 (166)
57 KOG3850 Predicted membrane pro 47.5 1.2E+02 0.0025 30.1 8.5 10 85-94 262-271 (455)
58 TIGR01451 B_ant_repeat conserv 47.4 27 0.00059 24.0 3.2 16 187-202 13-28 (53)
59 PF04420 CHD5: CHD5-like prote 47.0 19 0.00042 30.2 2.9 44 98-150 36-79 (161)
60 KOG0412 Golgi transport comple 45.0 51 0.0011 34.6 6.0 57 91-147 136-211 (773)
61 PF10187 Nefa_Nip30_N: N-termi 44.9 35 0.00075 27.0 3.9 36 80-117 36-71 (102)
62 KOG2376 Signal recognition par 44.7 55 0.0012 33.8 6.1 57 86-143 13-69 (652)
63 PRK01356 hscB co-chaperone Hsc 43.4 85 0.0018 26.5 6.3 30 120-149 122-151 (166)
64 COG3879 Uncharacterized protei 42.7 1E+02 0.0022 28.4 6.9 74 102-178 50-128 (247)
65 PF13598 DUF4139: Domain of un 42.5 58 0.0013 29.1 5.4 22 184-205 240-261 (317)
66 TIGR02606 antidote_CC2985 puta 42.3 56 0.0012 23.8 4.4 30 87-116 9-39 (69)
67 PF03693 RHH_2: Uncharacterise 39.9 42 0.0009 25.3 3.5 46 87-132 12-59 (80)
68 PLN03014 carbonic anhydrase 39.8 1.6E+02 0.0034 28.4 8.0 111 49-160 27-169 (347)
69 PRK11020 hypothetical protein; 39.4 54 0.0012 27.0 4.2 31 81-111 10-40 (118)
70 PF13838 Clathrin_H_link: Clat 38.3 41 0.00089 24.9 3.1 22 86-107 7-28 (66)
71 PRK00294 hscB co-chaperone Hsc 37.1 1.7E+02 0.0037 25.0 7.2 60 83-147 95-155 (173)
72 PF11464 Rbsn: Rabenosyn Rab b 36.2 1.1E+02 0.0024 20.9 4.7 29 121-149 6-34 (42)
73 PF09478 CBM49: Carbohydrate b 35.7 57 0.0012 23.9 3.6 19 185-203 16-34 (80)
74 PF13838 Clathrin_H_link: Clat 35.5 44 0.00095 24.8 2.9 24 122-145 8-31 (66)
75 PF13371 TPR_9: Tetratricopept 35.3 1.4E+02 0.003 20.0 6.2 60 94-154 4-63 (73)
76 PRK10564 maltose regulon perip 35.1 85 0.0018 29.6 5.4 39 82-120 254-292 (303)
77 TIGR02231 conserved hypothetic 33.8 90 0.002 30.4 5.6 20 185-204 441-460 (525)
78 PLN03088 SGT1, suppressor of 33.8 2.3E+02 0.0049 26.3 8.0 54 99-153 50-103 (356)
79 PLN03077 Protein ECB2; Provisi 32.9 4.7E+02 0.01 26.8 10.7 48 131-182 702-749 (857)
80 TIGR02795 tol_pal_ybgF tol-pal 32.8 1.8E+02 0.0039 20.6 7.6 60 93-152 10-71 (119)
81 PRK11020 hypothetical protein; 32.0 2.3E+02 0.005 23.4 6.8 33 118-150 12-44 (118)
82 KOG0553 TPR repeat-containing 30.8 3.2E+02 0.007 25.9 8.4 42 80-121 76-117 (304)
83 PF15067 FAM124: FAM124 family 30.7 2.6E+02 0.0057 25.6 7.6 84 133-218 138-232 (236)
84 PRK10747 putative protoheme IX 30.6 1.6E+02 0.0036 27.3 6.6 58 96-153 129-186 (398)
85 PF13801 Metal_resist: Heavy-m 30.4 1.5E+02 0.0033 21.6 5.2 29 99-136 56-84 (125)
86 PRK00260 cysS cysteinyl-tRNA s 29.8 2.2E+02 0.0047 27.6 7.4 30 120-149 418-447 (463)
87 KOG4825 Component of synaptic 29.1 77 0.0017 32.1 4.3 50 85-143 209-258 (666)
88 PF14853 Fis1_TPR_C: Fis1 C-te 28.7 1.4E+02 0.0031 20.8 4.4 39 96-134 12-51 (53)
89 PF12137 RapA_C: RNA polymeras 28.7 2E+02 0.0043 27.6 6.8 60 83-151 38-107 (362)
90 PF09424 YqeY: Yqey-like prote 27.7 3.1E+02 0.0066 22.7 7.0 69 86-154 2-91 (143)
91 COG5296 Transcription factor i 27.2 1.1E+02 0.0025 30.4 4.9 55 99-153 344-400 (521)
92 KOG1114 Tripeptidyl peptidase 26.4 6.1E+02 0.013 28.3 10.3 148 49-198 108-300 (1304)
93 PRK10404 hypothetical protein; 25.2 3.4E+02 0.0074 21.3 7.6 46 82-132 11-59 (101)
94 PF00787 PX: PX domain; Inter 24.9 1.9E+02 0.004 20.9 4.8 28 166-197 4-31 (113)
95 PF14197 Cep57_CLD_2: Centroso 24.5 2.5E+02 0.0053 20.7 5.3 17 82-98 4-20 (69)
96 KOG4643 Uncharacterized coiled 23.6 3E+02 0.0066 30.4 7.6 77 70-150 164-242 (1195)
97 PRK13848 conjugal transfer pro 23.4 1.1E+02 0.0023 24.6 3.3 12 121-132 13-24 (98)
98 PF13512 TPR_18: Tetratricopep 23.3 2.2E+02 0.0048 23.9 5.4 62 90-154 15-81 (142)
99 PRK13202 ureB urease subunit b 23.2 76 0.0017 25.7 2.5 27 189-216 22-48 (104)
100 PF14276 DUF4363: Domain of un 23.1 1.3E+02 0.0028 23.4 3.8 32 118-149 26-57 (121)
101 COG1071 AcoA Pyruvate/2-oxoglu 22.9 92 0.002 29.9 3.4 66 83-148 235-321 (358)
102 KOG4005 Transcription factor X 22.7 5.5E+02 0.012 24.0 8.2 67 82-148 65-136 (292)
103 PF03398 Ist1: Regulator of Vp 22.5 3.8E+02 0.0081 22.5 6.7 46 97-142 15-60 (165)
104 PF12895 Apc3: Anaphase-promot 22.4 2E+02 0.0042 20.2 4.4 45 96-142 36-80 (84)
105 PF14863 Alkyl_sulf_dimr: Alky 22.4 1.5E+02 0.0032 24.6 4.2 31 122-152 72-102 (141)
106 PRK13203 ureB urease subunit b 22.3 81 0.0017 25.4 2.5 26 189-215 21-46 (102)
107 PF01345 DUF11: Domain of unkn 22.2 2.9E+02 0.0062 19.4 6.2 16 187-202 42-57 (76)
108 PF09394 Inhibitor_I42: Chagas 21.8 1.5E+02 0.0031 21.6 3.7 48 162-210 28-78 (92)
109 cd00407 Urease_beta Urease bet 21.7 83 0.0018 25.3 2.4 27 189-216 21-47 (101)
110 PF15058 Speriolin_N: Sperioli 21.7 2E+02 0.0042 25.8 5.0 30 83-117 5-34 (200)
111 PF03732 Retrotrans_gag: Retro 21.6 2.9E+02 0.0063 19.2 5.2 48 83-132 27-75 (96)
112 TIGR00192 urease_beta urease, 21.6 85 0.0018 25.3 2.5 27 189-216 21-47 (101)
113 KOG3364 Membrane protein invol 21.5 1.4E+02 0.0031 25.6 3.9 38 99-136 85-123 (149)
114 PF00699 Urease_beta: Urease b 21.5 86 0.0019 25.2 2.5 26 189-215 20-45 (100)
115 TIGR02756 TraK_Ftype type-F co 21.4 5E+02 0.011 23.1 7.6 37 163-207 167-203 (232)
116 KOG1853 LIS1-interacting prote 21.2 3.9E+02 0.0084 25.3 7.0 44 106-149 109-176 (333)
117 PF14723 SSFA2_C: Sperm-specif 21.0 2.6E+02 0.0056 24.7 5.5 55 82-136 111-166 (179)
118 PF00553 CBM_2: Cellulose bind 20.7 1.5E+02 0.0033 22.4 3.7 15 188-202 15-29 (101)
119 PF13317 DUF4088: Protein of u 20.6 2.2E+02 0.0048 25.8 5.1 39 116-154 168-208 (229)
120 PF10475 DUF2450: Protein of u 20.6 4.6E+02 0.01 23.6 7.3 32 118-149 125-156 (291)
121 PRK10941 hypothetical protein; 20.6 1.3E+02 0.0029 27.4 3.9 75 71-154 139-215 (269)
122 PF00932 LTD: Lamin Tail Domai 20.5 84 0.0018 23.7 2.2 22 192-215 28-49 (116)
123 PF10126 Nit_Regul_Hom: Unchar 20.2 1.1E+02 0.0023 25.0 2.8 39 98-136 50-95 (110)
124 PF15368 BioT2: Spermatogenesi 20.1 1.1E+02 0.0024 26.7 3.0 62 73-135 72-151 (170)
No 1
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.1e-23 Score=170.07 Aligned_cols=62 Identities=47% Similarity=0.784 Sum_probs=60.0
Q ss_pred eeccCCeEEEEEeEEecCcccCCCCceEEEEEEEEEeCCCCCeEEeeceEEEEcCCCcEEec
Q 027566 160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENI 221 (222)
Q Consensus 160 ~a~T~gIkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN~s~~tVQLlsRhW~ItD~~G~v~eV 221 (222)
.+.|..|.|+|.|.|+|+||+|.+++|+|+|+|||.|+|+.+|||++|||+|||+||+++||
T Consensus 2 ~~~~~~I~V~V~~~yleeQS~P~~~RyvfaYtitI~N~g~~~vqLlsR~W~ITd~~g~v~eV 63 (126)
T COG2967 2 MASSPDIEVQVQPRYLEEQSSPEEERYVFAYTVTIRNLGEVPVQLLSRYWLITDGNGRVTEV 63 (126)
T ss_pred CcccCceEEEEeeEEccccCCcccceEEEEEEEEEecCCCccceeeeeEEEEecCCCcEEEE
Confidence 35788999999999999999999999999999999999999999999999999999999998
No 2
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=99.89 E-value=1.6e-23 Score=170.08 Aligned_cols=63 Identities=49% Similarity=0.898 Sum_probs=60.9
Q ss_pred eeeccCCeEEEEEeEEecCcccCCCCceEEEEEEEEEeCCCCCeEEeeceEEEEcCCCcEEec
Q 027566 159 SDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENI 221 (222)
Q Consensus 159 s~a~T~gIkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN~s~~tVQLlsRhW~ItD~~G~v~eV 221 (222)
+.++|+||+|+|.|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|
T Consensus 2 ~~~~t~gI~V~V~~~y~~e~S~p~~~~y~f~Y~ItI~N~~~~~vQL~~R~W~I~d~~g~~~~V 64 (127)
T PRK05461 2 YSAVTYGIEVSVQPRYLEEQSDPEEGRYVFAYTITIENLGRVPVQLLSRHWLITDANGRVQEV 64 (127)
T ss_pred cccccCCEEEEEEEEECcccCCCcCCEEEEEEEEEEEECCCCCEEEEeeeEEEEECCCCEEEE
Confidence 457899999999999999999999999999999999999999999999999999999999987
No 3
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=99.71 E-value=8.1e-18 Score=129.47 Aligned_cols=47 Identities=53% Similarity=1.023 Sum_probs=41.2
Q ss_pred ecCcccCCCCceEEEEEEEEEeCCCCCeEEeeceEEEEcCCCcEEec
Q 027566 175 IEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENI 221 (222)
Q Consensus 175 lpe~S~P~~~rYvFaY~ItIeN~s~~tVQLlsRhW~ItD~~G~v~eV 221 (222)
+|++|+|.+++|+|+|+|+|+|.++.+|||++|||+|+|++|++++|
T Consensus 1 ~~e~S~p~~~~y~f~Y~I~I~N~~~~~vqL~sR~W~I~d~~g~~~~V 47 (90)
T PF04379_consen 1 VPEQSDPSQNRYVFAYRIRIENHSDESVQLLSRHWIITDADGHVEEV 47 (90)
T ss_dssp -GGG-BGGGTBEEEEEEEEEEE-SSS-EEEEEEEEEEEETTS-EEEE
T ss_pred CccccCCCCCeEEEEEEEEEEECCCCCEEEEccEEEEEeCCCCEEEE
Confidence 68999999999999999999999999999999999999999999987
No 4
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=99.51 E-value=2.6e-14 Score=132.59 Aligned_cols=65 Identities=38% Similarity=0.604 Sum_probs=61.2
Q ss_pred cceeeccCCeEEEEEeEEecCcccCCCCceEEEEEEEEEe-CCCCCeEEeeceEEEEcCCCcEEec
Q 027566 157 CLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITN-NSERPVQLLRRHWIITDANGKTENI 221 (222)
Q Consensus 157 ~~s~a~T~gIkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN-~s~~tVQLlsRhW~ItD~~G~v~eV 221 (222)
....++|+||+|+|.|+|+|+.|.+..+.|+|+|.|+|+| ....+|||..|||.|+..||.+++|
T Consensus 248 dVh~etTenI~Vtvstfylge~s~~~pp~YwwrY~IRien~l~e~svQLreRhWrI~slng~le~V 313 (386)
T KOG4408|consen 248 DVHRETTENIRVTVSTFYLGERSSVHPPVYWWRYCIRIENALPEKSVQLRERHWRIFSLNGTLETV 313 (386)
T ss_pred hCChhhcCCeEEEEEEeeecccccCCCCceEEEEEEEeecCCCCcceEEeEeeEEEEecccchhhc
Confidence 3556899999999999999999999999999999999999 7889999999999999999999887
No 5
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=99.23 E-value=1.4e-11 Score=105.03 Aligned_cols=67 Identities=15% Similarity=0.360 Sum_probs=60.0
Q ss_pred cccccChHHHHHHHHHHHHHHHhc-------------cchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHH
Q 027566 75 ARSFLSRSQAYALLKQQMEVAAKT-------------EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAAR 141 (222)
Q Consensus 75 ~~~~~gc~~cye~Lk~qL~~AIk~-------------EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~ 141 (222)
..++|||+.||.+|..+|.+.|.+ .+-+.+..++.+| ..|++.|++.|+.|+||+||.
T Consensus 89 ~~g~fGCaeCY~tf~~~i~pi~~rvq~g~~~H~GK~P~~~~~~i~~~~~I---------~~L~e~Lq~~i~~EefEeAA~ 159 (176)
T COG3880 89 QSGLFGCAECYKTFESQISPIITRVQGGYVEHVGKVPKRIGRKINPKRKI---------IALKEALQDLIEREEFEEAAV 159 (176)
T ss_pred HhcccchHHHHHHHHHHhhHHHHHhhCCceeecCcCcccccccccHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999988 3355566678888 999999999999999999999
Q ss_pred HHHHhhhhC
Q 027566 142 YRDKLKEIA 150 (222)
Q Consensus 142 lRD~i~~L~ 150 (222)
+||+|+.|+
T Consensus 160 iRDqIr~Lk 168 (176)
T COG3880 160 IRDQIRALK 168 (176)
T ss_pred HHHHHHHHH
Confidence 999999997
No 6
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=98.17 E-value=1.8e-06 Score=56.08 Aligned_cols=31 Identities=48% Similarity=0.676 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 120 v~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
+..|..+|..|+++++||+||.|||+|..|+
T Consensus 4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~ 34 (36)
T PF02151_consen 4 IKELEEKMEEAVENEDFEKAARLRDQIKALK 34 (36)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 3788899999999999999999999998874
No 7
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=97.93 E-value=1e-05 Score=69.47 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=40.4
Q ss_pred CcccccChHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccc
Q 027566 74 SARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEE 118 (222)
Q Consensus 74 ~~~~~~gc~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~D 118 (222)
+.+..+.....+..|++.|+++|++|+||+||.+||+|++|+.++
T Consensus 127 ~~~~~i~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~ 171 (176)
T COG3880 127 RIGRKINPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKN 171 (176)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 366778888999999999999999999999999999998888553
No 8
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=97.68 E-value=5.9e-05 Score=48.94 Aligned_cols=33 Identities=33% Similarity=0.632 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
.-+..|+.+|..|++.++||+|+.+||+|..|+
T Consensus 2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~ 34 (36)
T PF02151_consen 2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALK 34 (36)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999996554
No 9
>PRK07883 hypothetical protein; Validated
Probab=95.99 E-value=0.0082 Score=59.21 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=35.9
Q ss_pred HHHHhhhhccc--chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 107 IRDSLRSFEEE--EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 107 LRDeI~~l~~~--Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
+++-+.-|+++ +.+..|.++|++|-++.+||+||++||+|..|+
T Consensus 393 v~~~~~fL~G~~~~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~ 438 (557)
T PRK07883 393 VARARAALTGDDDAVLAALRARIDRLAAAERFEEAARLRDRLAALL 438 (557)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 34444556554 455799999999999999999999999999985
No 10
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=95.93 E-value=0.0098 Score=59.28 Aligned_cols=50 Identities=32% Similarity=0.505 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHhhhhccc--chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 99 EDYKEAARIRDSLRSFEEE--EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 99 EdyE~AA~LRDeI~~l~~~--Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
|+|.+ .+..-+.-|+++ +.+..|+.+|++|.++.+||+||.+||+|.+|+
T Consensus 183 e~Y~~--~v~~~~~fL~G~~~~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~ 234 (598)
T PRK00558 183 EEYAE--LVDEAKLFLSGKTDEVLKELEEKMEEASENLEFERAARYRDQIQALR 234 (598)
T ss_pred HHHHH--HHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 44533 334444455554 556899999999999999999999999999985
No 11
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.75 E-value=0.023 Score=56.87 Aligned_cols=33 Identities=45% Similarity=0.633 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 118 Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
+-+..|+.+|++|.++.+||+||++||+|.+|+
T Consensus 613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~ 645 (652)
T PRK05298 613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELK 645 (652)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999985
No 12
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=95.69 E-value=0.014 Score=59.38 Aligned_cols=50 Identities=28% Similarity=0.344 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHhhhhccc--chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 99 EDYKEAARIRDSLRSFEEE--EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 99 EdyE~AA~LRDeI~~l~~~--Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
|+|.+... .-+.-|+++ +.+..|+++|++|.++.+||+||+|||+|..|+
T Consensus 182 e~Y~~~V~--~v~~fL~G~~~~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~ 233 (694)
T PRK14666 182 ETYAALVR--KVEMLLSGRSGELVDALRTEMEAASEALEFERAAVLRDQIRAVE 233 (694)
T ss_pred HHHHHHHH--HHHHHHcCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 55544443 333345554 556899999999999999999999999999985
No 13
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=95.67 E-value=0.016 Score=57.20 Aligned_cols=50 Identities=26% Similarity=0.453 Sum_probs=38.7
Q ss_pred cchHHHHHHHHHhhhhccc--chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 99 EDYKEAARIRDSLRSFEEE--EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 99 EdyE~AA~LRDeI~~l~~~--Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
|+|.+ .+..-+.-|+++ +.+..|..+|+.|-++.+||+||++||.|..|+
T Consensus 173 e~Y~~--~v~~~~~fL~G~~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~ 224 (519)
T PRK12306 173 DEYLE--QVKKAEEVLKGKIDELIEKLEEEMAEKAKNQQFERALVIRDEINAIE 224 (519)
T ss_pred HHHHH--HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44533 334444556654 556799999999999999999999999999985
No 14
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=95.56 E-value=0.017 Score=57.42 Aligned_cols=43 Identities=30% Similarity=0.389 Sum_probs=35.5
Q ss_pred HHHhhhhccc--chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 108 RDSLRSFEEE--EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 108 RDeI~~l~~~--Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
..-+.-|+++ +.+..|..+|++|-++.+||+||++||.|..|+
T Consensus 182 ~~~~~fL~g~~~~~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~ 226 (574)
T TIGR00194 182 EKIELFFNGRPQEVIKELEQKMEKASENLEFEEAARIRDQIAAVR 226 (574)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3444445554 556799999999999999999999999999985
No 15
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=95.54 E-value=0.015 Score=57.95 Aligned_cols=50 Identities=18% Similarity=0.367 Sum_probs=38.1
Q ss_pred cchHHHHHHHHHhhhhcc--cchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 99 EDYKEAARIRDSLRSFEE--EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 99 EdyE~AA~LRDeI~~l~~--~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
|+|.+... .-+.-|++ .+.+..|..+|++|-++.+||+||++||+|..|+
T Consensus 158 e~Y~~~v~--~~~~fL~G~~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~ 209 (574)
T PRK14670 158 KEYQKEVD--KIKHILNGNISKLLSQIEIKMKEAIQKEDFEAAIKLKETKRSLI 209 (574)
T ss_pred HHHHHHHH--HHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 44444332 33334554 3667899999999999999999999999999985
No 16
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.53 E-value=0.018 Score=57.94 Aligned_cols=32 Identities=41% Similarity=0.562 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 119 PIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 119 pv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
-+..|+.+|++|.++.+||+||.+||+|++|+
T Consensus 624 ~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 624 LIKQLEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34699999999999999999999999999884
No 17
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=95.47 E-value=0.017 Score=58.18 Aligned_cols=50 Identities=38% Similarity=0.470 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHhhhhccc--chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 99 EDYKEAARIRDSLRSFEEE--EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 99 EdyE~AA~LRDeI~~l~~~--Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
|+|.+... +-+.-|+++ +.+..|..+|+.|-++.+||+||++||+|..|+
T Consensus 184 e~Y~~~v~--~v~~fL~G~~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 235 (624)
T PRK14669 184 EAYAEAVR--DVRLFLEGRHSDLARSLRARMEAAALEMQFELAAKYRDLITTVE 235 (624)
T ss_pred HHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45544443 333445543 556799999999999999999999999999985
No 18
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=95.46 E-value=0.019 Score=57.60 Aligned_cols=50 Identities=32% Similarity=0.492 Sum_probs=38.4
Q ss_pred cchHHHHHHHHHhhhhccc--chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 99 EDYKEAARIRDSLRSFEEE--EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 99 EdyE~AA~LRDeI~~l~~~--Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
|+|.+.. ..-+.-|+++ +.+..|..+|++|-++.+||+||++||+|..|+
T Consensus 196 e~Y~~~v--~~~~~fL~G~~~~l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~ 247 (621)
T PRK14671 196 EDYLEMI--EEIVRLLKGKTSALIRSLTEEMQRAAAELKFEEAAELKDQIESLK 247 (621)
T ss_pred HHHHHHH--HHHHHHHcCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4554333 3333445554 566899999999999999999999999999985
No 19
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=95.42 E-value=0.02 Score=58.34 Aligned_cols=39 Identities=41% Similarity=0.568 Sum_probs=33.5
Q ss_pred hhhccc--chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 112 RSFEEE--EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 112 ~~l~~~--Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
.-|+++ +.+..|..+|++|-++.+||+||+|||+|..|+
T Consensus 197 ~fL~G~~~~ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~ 237 (691)
T PRK14672 197 LLLEGNIDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIR 237 (691)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 345543 556899999999999999999999999999985
No 20
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=95.35 E-value=0.022 Score=56.65 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=35.1
Q ss_pred HHHhhhhccc--chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 108 RDSLRSFEEE--EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 108 RDeI~~l~~~--Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
..-+.-|+++ +.+..|..+|++|-++.+||+||+|||.|..|+
T Consensus 187 ~~~~~fL~G~~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 231 (567)
T PRK14667 187 KSAKAFLSGNVKEVLPELYDKIEEYSQKLMFEKAAVIRDQILALE 231 (567)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3444445554 455799999999999999999999999999985
No 21
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=95.32 E-value=0.024 Score=56.53 Aligned_cols=37 Identities=41% Similarity=0.535 Sum_probs=32.5
Q ss_pred hccc--chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 114 FEEE--EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 114 l~~~--Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
|+++ +.+..|+.+|++|-++.+||+||++||+|.+|+
T Consensus 193 L~G~~~~~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~ 231 (577)
T PRK14668 193 FEGETGVLADPLRREMEAAAQAQEFERAANLRDRLEAVE 231 (577)
T ss_pred HcCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5554 455799999999999999999999999999985
No 22
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.91 E-value=0.034 Score=55.77 Aligned_cols=32 Identities=47% Similarity=0.670 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCC
Q 027566 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (222)
Q Consensus 120 v~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p 151 (222)
+..|..+|++|.++-+||+||+|||+|.+|+.
T Consensus 626 I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~ 657 (663)
T COG0556 626 IKKLEKEMKEAAKNLEFEEAARLRDEIKELKE 657 (663)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999864
No 23
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=94.54 E-value=0.042 Score=54.98 Aligned_cols=49 Identities=31% Similarity=0.532 Sum_probs=36.7
Q ss_pred cchHHHHHHHHHhhh-hccc--chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 99 EDYKEAARIRDSLRS-FEEE--EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 99 EdyE~AA~LRDeI~~-l~~~--Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
|+|.+... +++. |.++ .-+..|+++|++|-++.+||.||+|||.|.+|.
T Consensus 183 e~Y~e~v~---~~~~fL~G~~~~v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~ 234 (581)
T COG0322 183 EEYREIVE---EVKGFLKGKDDAVLQELEEKMEEASENLDFERAARLRDQIKALE 234 (581)
T ss_pred HHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 55554443 3333 4444 233699999999999999999999999999986
No 24
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=94.03 E-value=0.067 Score=52.89 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhhhhccc-chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEE-EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~-Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
.-+-.+.+.=+.||.+|+|.-|.+++..|++|+.. ..+++|...=..||++|+|..|-.+.|+|.+|+
T Consensus 171 aiIgaidenKqeAVakEdfdlAKkaklAiaDLkKsgeeleelEndKgcAVadEDfdlAkdkkdeiealR 239 (666)
T KOG4825|consen 171 AIIGAIDENKQEAVAKEDFDLAKKAKLAIADLKKSGEELEELENDKGCAVADEDFDLAKDKKDEIEALR 239 (666)
T ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHH
Confidence 44556777778899999999999999999999865 778899999999999999999999999999864
No 25
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=93.45 E-value=0.54 Score=35.79 Aligned_cols=59 Identities=27% Similarity=0.483 Sum_probs=40.2
Q ss_pred eccCCeEEEEEeE-Eec---CcccCCCCceEEEEEEEEEeCCCCCeEEeeceEEEEcCCCcEE
Q 027566 161 ATTLGIRVQVRSV-YIE---DRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTE 219 (222)
Q Consensus 161 a~T~gIkV~V~t~-Ylp---e~S~P~~~rYvFaY~ItIeN~s~~tVQLlsRhW~ItD~~G~v~ 219 (222)
..+.+++|+|... +.. +...|.++..+..=.++|+|.+++++.+-.-++.+.|.+|...
T Consensus 7 ~~~~~~~vtV~~v~~~~~~~~~~~~~~g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~ 69 (123)
T PF11611_consen 7 VSVGGIEVTVNSVEKTDGSNEYSKPKEGNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKY 69 (123)
T ss_dssp EEETTEEEEEEEE-EEE-SS-BEES---SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B-
T ss_pred EEECCEEEEEEEEEeecCCccccccCCCCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEE
Confidence 3468999999887 332 3345666677788999999999999999889999999988754
No 26
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.36 E-value=0.15 Score=51.32 Aligned_cols=39 Identities=31% Similarity=0.456 Sum_probs=33.9
Q ss_pred cccChHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 77 SFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 77 ~~~gc~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
+.-..+..++.|+.+|.+|.+.-+||+||+|||+|.+|+
T Consensus 618 ~~~e~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~ 656 (663)
T COG0556 618 SKKELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELK 656 (663)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 445567889999999999999999999999999995554
No 27
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.04 E-value=0.19 Score=50.74 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
..-++.|+++|..|.+..+||+||++||+|++|+
T Consensus 622 ~~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 622 KKLIKQLEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4677899999999999999999999999997663
No 28
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=90.74 E-value=0.28 Score=49.23 Aligned_cols=33 Identities=36% Similarity=0.591 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
.-++.|+.+|..|.+..+||+|+++||+|++|+
T Consensus 613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~ 645 (652)
T PRK05298 613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELK 645 (652)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999995554
No 29
>PRK07883 hypothetical protein; Validated
Probab=90.49 E-value=0.33 Score=48.08 Aligned_cols=30 Identities=37% Similarity=0.588 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHh
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSL 111 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI 111 (222)
..-++.|+.+|+.|.++.+||+||++||+|
T Consensus 405 ~~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i 434 (557)
T PRK07883 405 DAVLAALRARIDRLAAAERFEEAARLRDRL 434 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 468899999999999999999999999999
No 30
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=90.27 E-value=0.35 Score=48.41 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
..-++.|+++|+.|.++.+||+||.+||+|..|+
T Consensus 201 ~~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~ 234 (598)
T PRK00558 201 DEVLKELEEKMEEASENLEFERAARYRDQIQALR 234 (598)
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999996554
No 31
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=87.95 E-value=0.55 Score=46.53 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
..-++.|+.+|+.|.++.+||+||++||.|..|+
T Consensus 191 ~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~ 224 (519)
T PRK12306 191 DELIEKLEEEMAEKAKNQQFERALVIRDEINAIE 224 (519)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999998876
No 32
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=87.65 E-value=0.59 Score=48.00 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhh
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSF 114 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l 114 (222)
..=++.|+.+|+.|.++.+||+||++||+|+.|
T Consensus 200 ~~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL 232 (694)
T PRK14666 200 GELVDALRTEMEAASEALEFERAAVLRDQIRAV 232 (694)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999444
No 33
>PF15469 Sec5: Exocyst complex component Sec5
Probab=87.47 E-value=2.5 Score=35.23 Aligned_cols=51 Identities=20% Similarity=0.392 Sum_probs=46.6
Q ss_pred cchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 99 EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
+.-+++.+++..+.-|+....+..|=..|+++|+.++|+.|...-...+.+
T Consensus 65 ~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 65 ERREKADKLRNALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999998877777766
No 34
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=86.79 E-value=0.68 Score=46.36 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
..-++.|+.+|+.|.++.+||+||++||+|+.|+
T Consensus 198 ~~~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~ 231 (577)
T PRK14668 198 GVLADPLRREMEAAAQAQEFERAANLRDRLEAVE 231 (577)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999995544
No 35
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=86.50 E-value=0.75 Score=46.57 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
..-++.|+.+|+.|.+..+||+||++||+|+.|+
T Consensus 202 ~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 235 (624)
T PRK14669 202 SDLARSLRARMEAAALEMQFELAAKYRDLITTVE 235 (624)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999997665
No 36
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=86.41 E-value=0.89 Score=46.72 Aligned_cols=34 Identities=32% Similarity=0.557 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
..-++.|+.+|+.|.++.+||+||++||+|+.|+
T Consensus 204 ~~ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~ 237 (691)
T PRK14672 204 DATVARLEKRMKRAVRQEAFEAAARIRDDIQAIR 237 (691)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999997665
No 37
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=86.41 E-value=0.89 Score=45.91 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
..-++.|+.+|+.|.+..+||+||++||.|..|+
T Consensus 214 ~~l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~ 247 (621)
T PRK14671 214 SALIRSLTEEMQRAAAELKFEEAAELKDQIESLK 247 (621)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999996664
No 38
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=86.27 E-value=0.79 Score=45.90 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
..-++.|+.+|..|.+..+||+||++||.|..|+
T Consensus 198 ~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 231 (567)
T PRK14667 198 KEVLPELYDKIEEYSQKLMFEKAAVIRDQILALE 231 (567)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999997665
No 39
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=86.03 E-value=0.83 Score=45.84 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
..=++.|+.+|..|.+..+||+||++||+|..|+
T Consensus 176 ~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~ 209 (574)
T PRK14670 176 SKLLSQIEIKMKEAIQKEDFEAAIKLKETKRSLI 209 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999997665
No 40
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=85.56 E-value=0.87 Score=45.61 Aligned_cols=34 Identities=35% Similarity=0.546 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
..=+..|+.+|+.|.++.+||+||++||+|+.|+
T Consensus 193 ~~~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~ 226 (574)
T TIGR00194 193 QEVIKELEQKMEKASENLEFEEAARIRDQIAAVR 226 (574)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999995554
No 41
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=84.74 E-value=3 Score=34.42 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=46.0
Q ss_pred eeeccCCeEEEEEeEEecCcccCCCCceEEEEEEEEEeCCCCCeEEeeceEEEEcCCCcE
Q 027566 159 SDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKT 218 (222)
Q Consensus 159 s~a~T~gIkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN~s~~tVQLlsRhW~ItD~~G~v 218 (222)
+..++++|.|-....=.+.-|...+..|-=+|.|++.|.++.++.|-.=...-.+.+|+.
T Consensus 20 ~a~~~d~i~V~At~~~~Gs~sv~~k~~ytktF~V~vaN~s~~~idLsk~Cf~a~~~~gk~ 79 (124)
T PF14263_consen 20 NASAPDNIAVYATEKSQGSVSVGGKSFYTKTFDVTVANLSDKDIDLSKMCFKAYSPDGKE 79 (124)
T ss_dssp -----SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE-SSS-EE-TT-EEEEEETTS-E
T ss_pred hhccCCCeEEEEEecCCccEeecCccceEEEEEEEEecCCCCccccccchhhhccccCCE
Confidence 344578999999999888889888889999999999999999999998899988888864
No 42
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=84.11 E-value=6.5 Score=28.51 Aligned_cols=59 Identities=27% Similarity=0.374 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 027566 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147 (222)
Q Consensus 84 cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~ 147 (222)
....++++|+.+...++-..-..+..++ +..+..+...|..++..++|+.|+.+=.+++
T Consensus 9 e~mE~rE~le~~~~~~~~~~L~~l~~~~-----~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLk 67 (78)
T PF07743_consen 9 EQMELREELEEAQNSDDEAELEELKKEI-----EERIKELIKELAEAFDAKDWEEAKEALRKLK 67 (78)
T ss_dssp HHHHHHHHHHHHCCCTSHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 4567778888777655555556666665 3445788999999999999999998766665
No 43
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=83.58 E-value=1.2 Score=44.82 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhhhh
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSF 114 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l 114 (222)
.-+..|+++|+.|-+..+||.||++||+|.+|
T Consensus 202 ~v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al 233 (581)
T COG0322 202 AVLQELEEKMEEASENLDFERAARLRDQIKAL 233 (581)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 67889999999999999999999999999443
No 44
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=80.23 E-value=8 Score=31.21 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=61.6
Q ss_pred cccccChHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcc------------------cchHHHHHHHHHHHHHhhhH
Q 027566 75 ARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE------------------EEPIFRLRRLMKEAVAEERF 136 (222)
Q Consensus 75 ~~~~~gc~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~------------------~Dpv~~L~~~L~~AV~eErY 136 (222)
....-||......+..||+-|=...+-...+-|...+.+++. +..|..-+.+|++|.+..+.
T Consensus 16 ~~~~~gC~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~ 95 (115)
T PF06476_consen 16 AAALTGCEAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS 95 (115)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 345789999999999999999999998888888777776652 34556788899999999999
Q ss_pred HHHHHHHHHhhh
Q 027566 137 EDAARYRDKLKE 148 (222)
Q Consensus 137 E~AA~lRD~i~~ 148 (222)
++.+..+..|.+
T Consensus 96 ~KI~K~~~KL~e 107 (115)
T PF06476_consen 96 DKIAKRQKKLAE 107 (115)
T ss_pred HHHHHHHHHHHH
Confidence 999988888765
No 45
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=79.17 E-value=10 Score=25.49 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=42.6
Q ss_pred HHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCC
Q 027566 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (222)
Q Consensus 95 AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~ 152 (222)
+++.++|++|..+-.++-+...+++-..+ ..-+-.++..+|++|..+=..+....|+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~-~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARL-LLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHH-HHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 57889999999998887555555543333 5666778999999999988888777665
No 46
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=68.56 E-value=26 Score=29.27 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q 027566 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (222)
Q Consensus 81 c~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~ 148 (222)
.--....+++.|+.+-...+.+.=..|..++ ...+..+...|.+|++.++|+.|+.+-.+++=
T Consensus 79 fLme~Me~rE~lee~~~~~d~~~L~~l~~~~-----~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLky 141 (157)
T TIGR00714 79 FLMEQLELREELDEIEQAKDEARLESFIKRV-----KKMFQTRHQLLVEQLDNQTWAAAADYTRKLRF 141 (157)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4467778888887776555544333444444 22336778889999999999999877655543
No 47
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=68.07 E-value=27 Score=31.46 Aligned_cols=68 Identities=13% Similarity=0.272 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhhh----hcccc------h---H----HHHHHHHHHH-H-HhhhHHHHHHHH
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRS----FEEEE------P---I----FRLRRLMKEA-V-AEERFEDAARYR 143 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~----l~~~D------p---v----~~L~~~L~~A-V-~eErYE~AA~lR 143 (222)
+.++.+.+++-+++++++||+|..+-..+.+ ....+ . + ..+++.|..+ + .+|+...|+++|
T Consensus 3 ~eLd~~sd~~lqlvk~~~yeeA~q~l~~fs~~f~~~~~~~~~~t~e~iralT~t~~~a~~al~~~~~~~~e~~~~at~~R 82 (232)
T PF09577_consen 3 KELDQLSDEALQLVKQGKYEEAKQLLEYFSEQFTSVDFKGRPLTMEEIRALTETIEEAKKALTSVSMSEEEKIRAATQFR 82 (232)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 4678889999999999999999988554432 22211 1 1 1333333333 2 456789999999
Q ss_pred HHhhhhC
Q 027566 144 DKLKEIA 150 (222)
Q Consensus 144 D~i~~L~ 150 (222)
-.+.+|.
T Consensus 83 LavDAl~ 89 (232)
T PF09577_consen 83 LAVDALT 89 (232)
T ss_pred HHHHHhc
Confidence 9999995
No 48
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=67.30 E-value=24 Score=30.21 Aligned_cols=61 Identities=11% Similarity=0.212 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~ 148 (222)
-....++++|+.+-...+-++=..|.+++ +..+..+...|.+|+..++|+.|+.+-.+++=
T Consensus 95 me~ME~rE~lee~~~~~d~~~L~~l~~~v-----~~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~y 155 (173)
T PRK01773 95 MQQMEWREQLEEIEQQQDEDALTAFSKEI-----KQEQQAILTELSTALNSQQWQQASQINDRLRF 155 (173)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45667888888765555544444555555 23346778889999999999999876665543
No 49
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=64.37 E-value=39 Score=22.53 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=39.6
Q ss_pred HHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCC
Q 027566 93 EVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNS 153 (222)
Q Consensus 93 ~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~ 153 (222)
..+++.++|++|..+-+++-....+++ ..+...=.-.....+|++|..+=+++-++.|+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~-~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNP-EAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHH-HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 346788999999998777744443322 233333344557888999998888887777753
No 50
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=61.45 E-value=28 Score=29.15 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhh
Q 027566 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEER 135 (222)
Q Consensus 81 c~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eEr 135 (222)
...++.++++++...=.+.+|-+.+++++++ ..+.++|++.-++..
T Consensus 45 l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~---------~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 45 LRKEILQLKRELNAISAQDEFAKWAKLNRKL---------DKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHTTS-TTTSHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 3344444444444433348999999999999 777777766544433
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=61.33 E-value=40 Score=28.81 Aligned_cols=61 Identities=11% Similarity=-0.008 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHh-hhHHHHHHHHHHhhh
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAE-ERFEDAARYRDKLKE 148 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~e-ErYE~AA~lRD~i~~ 148 (222)
-+...++++|+.+-...+-++-..|..++ +..+..+..+|.++++. .+|+.|+..-.+++=
T Consensus 98 me~mE~rE~lee~~~~~d~~~L~~l~~e~-----~~~~~~~~~~l~~~~~~~~d~~~A~~~~~kL~y 159 (176)
T PRK03578 98 MQQMEWREAIEDARAARDVDALDALLAEL-----RDERRERYAELGALLDSRGDDQAAAEAVRQLMF 159 (176)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 35567888888765544544333444444 33446778889999988 899999876655543
No 52
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=60.11 E-value=44 Score=28.30 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhccchHH-HHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q 027566 83 QAYALLKQQMEVAAKTEDYKE-AARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~-AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~ 148 (222)
-....++++|+.+-...+-+. -..|..+| ...+..+...|.++++.++|+.|+.+-.+++=
T Consensus 93 me~me~rE~le~~~~~~d~~~~l~~l~~~~-----~~~~~~~~~~l~~~~~~~d~~~A~~~~~~Lky 154 (171)
T PRK05014 93 MEQMELREELEDIEQSKDPEAALESFIKRV-----KKMFKTRLQQMVEQLDNEAWDAAADTVRKLKF 154 (171)
T ss_pred HHHHHHHHHHHhhccccCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 455667777766654444332 23334433 22336777889999999999999887666553
No 53
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=59.96 E-value=45 Score=30.19 Aligned_cols=65 Identities=18% Similarity=0.165 Sum_probs=53.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHhhhhcccch------HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCC
Q 027566 89 KQQMEVAAKTEDYKEAARIRDSLRSFEEEEP------IFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNS 153 (222)
Q Consensus 89 k~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dp------v~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~ 153 (222)
++-++..++.++++.|+.+--=+..++..+. ....-+.|+.|+++++|+-|..|-.-|+.|.|.-
T Consensus 183 ~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 183 RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 4667888899999999998777766776554 3466688999999999999999999999997654
No 54
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=56.26 E-value=89 Score=24.35 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhh-c----------cc---chHHHHHHHHHHHHHhhhHHH----HHHH
Q 027566 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSF-E----------EE---EPIFRLRRLMKEAVAEERFED----AARY 142 (222)
Q Consensus 81 c~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l-~----------~~---Dpv~~L~~~L~~AV~eErYE~----AA~l 142 (222)
..+.+...=.+++++|+++++++|.+.-+++... . .. |.+..--.+|+.+|+.++..+ -+.+
T Consensus 24 ~~~~i~~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~~~l~el~~l 103 (121)
T PF14276_consen 24 STDSIEEQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKSESLAELAEL 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3466777778888999999999999885554332 1 11 445566778899999988544 4455
Q ss_pred HHHhhhh
Q 027566 143 RDKLKEI 149 (222)
Q Consensus 143 RD~i~~L 149 (222)
+-.++.|
T Consensus 104 k~~i~~i 110 (121)
T PF14276_consen 104 KELIEHI 110 (121)
T ss_pred HHHHHHH
Confidence 5555555
No 55
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=52.94 E-value=91 Score=28.45 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHH----HHHhhhhc-ccch---------HHHHHHHHHHHHH------hhhHHHHHHH
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARI----RDSLRSFE-EEEP---------IFRLRRLMKEAVA------EERFEDAARY 142 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~L----RDeI~~l~-~~Dp---------v~~L~~~L~~AV~------eErYE~AA~l 142 (222)
+++..+..+.-+++++++||+|.++ .++..... .++| |..--++..+|+. +|+...|+++
T Consensus 3 ~eL~~lsD~~LQl~K~~~yeeAkqvL~yFs~~F~~~~~~~~~~~t~~elR~iT~~~e~a~~al~~~~~~~~eki~~~t~f 82 (233)
T TIGR02878 3 EELNDLSDQVLQLTKQARYEEAKQVLEYFSKQFVSAGKEKDPMLTMDQLRTITLTYERAVQALTATDMSDDEKIRAVTAF 82 (233)
T ss_pred hhHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcccccCcccCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 4677888899999999999999998 33333333 2233 1222233333333 4678999999
Q ss_pred HHHhhhhC
Q 027566 143 RDKLKEIA 150 (222)
Q Consensus 143 RD~i~~L~ 150 (222)
|-.+.+|.
T Consensus 83 RLavDA~~ 90 (233)
T TIGR02878 83 RLAVDAIV 90 (233)
T ss_pred HHHHHHhc
Confidence 99999995
No 56
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=47.85 E-value=19 Score=31.06 Aligned_cols=14 Identities=7% Similarity=0.138 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhc
Q 027566 85 YALLKQQMEVAAKT 98 (222)
Q Consensus 85 ye~Lk~qL~~AIk~ 98 (222)
++.|..+|+.||++
T Consensus 2 LeD~EsklN~AIER 15 (166)
T PF04880_consen 2 LEDFESKLNQAIER 15 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57889999999988
No 57
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=47.51 E-value=1.2e+02 Score=30.08 Aligned_cols=10 Identities=0% Similarity=0.132 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 027566 85 YALLKQQMEV 94 (222)
Q Consensus 85 ye~Lk~qL~~ 94 (222)
++.+.++|+.
T Consensus 262 l~aileeL~e 271 (455)
T KOG3850|consen 262 LDAILEELRE 271 (455)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 58
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=47.37 E-value=27 Score=24.01 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.7
Q ss_pred EEEEEEEEEeCCCCCe
Q 027566 187 FFAYRVRITNNSERPV 202 (222)
Q Consensus 187 vFaY~ItIeN~s~~tV 202 (222)
...|+|+|+|.+..++
T Consensus 13 ~v~Yti~v~N~g~~~a 28 (53)
T TIGR01451 13 TITYTITVTNNGNVPA 28 (53)
T ss_pred EEEEEEEEEECCCCce
Confidence 5799999999998665
No 59
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=47.03 E-value=19 Score=30.16 Aligned_cols=44 Identities=23% Similarity=0.468 Sum_probs=30.2
Q ss_pred ccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 98 TEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 98 ~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
....++-.+++.|| .+|+++|+.-=+.++|-+.|+++.++.+++
T Consensus 36 ~~~~~~~~~l~~Ei---------~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~ 79 (161)
T PF04420_consen 36 SKSSKEQRQLRKEI---------LQLKRELNAISAQDEFAKWAKLNRKLDKLE 79 (161)
T ss_dssp -HHHHHHHHHHHHH---------HHHHHHHTTS-TTTSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHH---------HHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 35666667777777 677777776666777888888777777764
No 60
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.96 E-value=51 Score=34.62 Aligned_cols=57 Identities=26% Similarity=0.425 Sum_probs=37.8
Q ss_pred HHHHHHhccchHHHHHHHHHhhhhc----------c-------cchHHHHHHHHH--HHHHhhhHHHHHHHHHHhh
Q 027566 91 QMEVAAKTEDYKEAARIRDSLRSFE----------E-------EEPIFRLRRLMK--EAVAEERFEDAARYRDKLK 147 (222)
Q Consensus 91 qL~~AIk~EdyE~AA~LRDeI~~l~----------~-------~Dpv~~L~~~L~--~AV~eErYE~AA~lRD~i~ 147 (222)
-+..|++.||||+||..-.++..|- . .||+..|+..=+ ..|-.|+|.+|++=+|.-.
T Consensus 136 gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~~a~e~L~~l~~~~f~eA~r~~D~~e 211 (773)
T KOG0412|consen 136 GVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLKEAKERLSKLFKERFTEAVRKQDLKE 211 (773)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 4567888999999999855554432 1 355544433222 2567789999999888643
No 61
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=44.89 E-value=35 Score=26.98 Aligned_cols=36 Identities=25% Similarity=0.573 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhccc
Q 027566 80 SRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEE 117 (222)
Q Consensus 80 gc~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~ 117 (222)
+...=|+.|+.+ ++.+++.|+++.+++++|+.|-..
T Consensus 36 d~rsLye~Lqen--K~~Kq~efeE~~K~kn~~r~LDed 71 (102)
T PF10187_consen 36 DGRSLYERLQEN--KAAKQEEFEEKHKLKNQFRGLDED 71 (102)
T ss_pred CCCCHHHHHHHH--HHHHHHHHHHHHhcccccCCCCHH
Confidence 344568888776 778889999999999999888655
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.71 E-value=55 Score=33.77 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHH
Q 027566 86 ALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYR 143 (222)
Q Consensus 86 e~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lR 143 (222)
+.+=.+|......++|++|++--++|-..- .|+...++..+=.-|..++|++|-.+-
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~i 69 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLI 69 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHH
Confidence 445567778888999999999999995544 688899999999999999999998543
No 63
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=43.41 E-value=85 Score=26.54 Aligned_cols=30 Identities=30% Similarity=0.245 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 120 v~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
+..+...|.+|+...+|+.|+.+-.+++=+
T Consensus 122 ~~~~~~~l~~~f~~~d~~~A~~~~~~L~y~ 151 (166)
T PRK01356 122 YKNEIDSLKQAFEEQNLSDATIKTSKLKYI 151 (166)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 357778899999999999999877666543
No 64
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.67 E-value=1e+02 Score=28.38 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhhccc-chHHHHHHHHHHHHHhhh---HHHHHHHHHHhhhhCCCCCCCcceeeccCCeEEEEEeEE-ec
Q 027566 102 KEAARIRDSLRSFEEE-EPIFRLRRLMKEAVAEER---FEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVY-IE 176 (222)
Q Consensus 102 E~AA~LRDeI~~l~~~-Dpv~~L~~~L~~AV~eEr---YE~AA~lRD~i~~L~p~~~~~~~s~a~T~gIkV~V~t~Y-lp 176 (222)
-+...|+++++.++++ ..+..=.+.|+..++..+ -++.+.+-|++..|+ +.--....+-.||.|++++.+ .|
T Consensus 50 ~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~---~~aG~v~V~G~Gl~ITi~d~~~~~ 126 (247)
T COG3879 50 ARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLR---MLAGSVPVTGPGLVITIDDPGYSP 126 (247)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH---HHhccCCCcCCcEEEEecCCCCCc
Confidence 3344667777666654 444444455666666655 677778888888873 322223345589999998744 44
Q ss_pred Cc
Q 027566 177 DR 178 (222)
Q Consensus 177 e~ 178 (222)
+.
T Consensus 127 ~~ 128 (247)
T COG3879 127 NG 128 (247)
T ss_pred cc
Confidence 43
No 65
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=42.47 E-value=58 Score=29.12 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=18.2
Q ss_pred CceEEEEEEEEEeCCCCCeEEe
Q 027566 184 GQYFFAYRVRITNNSERPVQLL 205 (222)
Q Consensus 184 ~rYvFaY~ItIeN~s~~tVQLl 205 (222)
.++.|.|+|+|+|..+.++.|.
T Consensus 240 ~~~~~~~~itv~N~~~~~v~v~ 261 (317)
T PF13598_consen 240 QRRTYEYTITVRNNKDEPVTVT 261 (317)
T ss_pred EEEEEEEEEEEECCCCCCEEEE
Confidence 4788999999999998777653
No 66
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=42.26 E-value=56 Score=23.83 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhccchHHHHHH-HHHhhhhcc
Q 027566 87 LLKQQMEVAAKTEDYKEAARI-RDSLRSFEE 116 (222)
Q Consensus 87 ~Lk~qL~~AIk~EdyE~AA~L-RDeI~~l~~ 116 (222)
.+..-++..|+.+.|..+-.. |+-|+.++.
T Consensus 9 ~~~~~i~~~V~sG~Y~s~SEVir~aLR~le~ 39 (69)
T TIGR02606 9 HLESFIRSQVQSGRYGSASEVVRAALRLLEE 39 (69)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Confidence 345556677778888877654 555544443
No 67
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=39.93 E-value=42 Score=25.29 Aligned_cols=46 Identities=28% Similarity=0.457 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhccchHHHHHH-HHHhhhhcccc-hHHHHHHHHHHHHH
Q 027566 87 LLKQQMEVAAKTEDYKEAARI-RDSLRSFEEEE-PIFRLRRLMKEAVA 132 (222)
Q Consensus 87 ~Lk~qL~~AIk~EdyE~AA~L-RDeI~~l~~~D-pv~~L~~~L~~AV~ 132 (222)
.+..-++..|+.+.|..+... |+.|+.|+..+ .+..|+..|.+.++
T Consensus 12 ~~~~~i~~~V~sG~Y~s~SEvvR~aLRlle~~e~~~~~Lr~~l~~g~~ 59 (80)
T PF03693_consen 12 ELEAFIEEQVASGRYSSASEVVREALRLLEEREAKLEALREALQEGLE 59 (80)
T ss_dssp HHHHHHHHHHCTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556777778999887765 77776665543 23345555555544
No 68
>PLN03014 carbonic anhydrase
Probab=39.76 E-value=1.6e+02 Score=28.41 Aligned_cols=111 Identities=18% Similarity=0.260 Sum_probs=53.0
Q ss_pred ceeeEEEeecCCCCCCCCCCCCCCCCcccccChH--------------------HHHHHHHHHHHHHHhc-c--chHHHH
Q 027566 49 RTYGIVACVGGGGGGSGGGGERLSSSARSFLSRS--------------------QAYALLKQQMEVAAKT-E--DYKEAA 105 (222)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gc~--------------------~cye~Lk~qL~~AIk~-E--dyE~AA 105 (222)
|...++||-....+.+.++++++++++++.+.-. .-|+.--+.|++++.. + +-..|+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (347)
T PLN03014 27 RTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMGTEAYDEAIEALKKLLIEKEELKTVAAA 106 (347)
T ss_pred CCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhchhhHHHHHHHHHhhcccccccchHHHH
Confidence 4558889886554444444443444433332211 1133333333333333 2 233455
Q ss_pred HHHHHhhhhc--------ccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh-CCCCCCCccee
Q 027566 106 RIRDSLRSFE--------EEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI-APNSLLKCLSD 160 (222)
Q Consensus 106 ~LRDeI~~l~--------~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L-~p~~~~~~~s~ 160 (222)
++..-..+|+ .-||+.+|.+.-+.-.+ +.|+.-..++.++..- .|..+.-+|++
T Consensus 107 ~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~-~~~~~~~~~~~~La~GQ~P~alvI~CsD 169 (347)
T PLN03014 107 KVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKK-EKYETNPALYGELAKGQSPKYMVFACSD 169 (347)
T ss_pred hHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHh-hccccCHHHHHhhccCCCCCEEEEEecc
Confidence 6666556665 24667777766665444 4555544444444332 25554444443
No 69
>PRK11020 hypothetical protein; Provisional
Probab=39.44 E-value=54 Score=27.03 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Q 027566 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSL 111 (222)
Q Consensus 81 c~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI 111 (222)
..+.++.++.+|..|..++|-+.-+++.+||
T Consensus 10 L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~ 40 (118)
T PRK11020 10 LSDRLDAIRHKLAAASLRGDAEKYAQFEKEK 40 (118)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4567888899999999999999999999999
No 70
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=38.29 E-value=41 Score=24.90 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhccchHHHHHH
Q 027566 86 ALLKQQMEVAAKTEDYKEAARI 107 (222)
Q Consensus 86 e~Lk~qL~~AIk~EdyE~AA~L 107 (222)
+.+..+.+.++..++|++||++
T Consensus 7 ~l~~~~F~~l~~~g~y~eAA~~ 28 (66)
T PF13838_consen 7 DLYVQQFNELFSQGQYEEAAKV 28 (66)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH
Confidence 3466777777777777777775
No 71
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=37.08 E-value=1.7e+02 Score=24.97 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhh-HHHHHHHHHHhh
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEER-FEDAARYRDKLK 147 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eEr-YE~AA~lRD~i~ 147 (222)
-....++++|+.+-..++-++=..++.+|++ -...|...+.+++..+. |+.|+.+=.+++
T Consensus 95 me~me~rE~le~~~~~~d~~~l~~~~~~i~~-----~~~~l~~~~~~~~~~~~~~~~A~~~v~kl~ 155 (173)
T PRK00294 95 LQQMQLREELEELQDEADLAGVATFKRRLKA-----AQDELNESFAACWDDAARREEAERLMRRMQ 155 (173)
T ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHH-----HHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3566677777766555554443444555511 12455555555555544 899887665554
No 72
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=36.22 E-value=1.1e+02 Score=20.90 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 121 FRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 121 ~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
.-++.-+++|-+..+|++.+.|..-+++|
T Consensus 6 ~~I~~~I~qAk~~~r~dEV~~L~~NL~EL 34 (42)
T PF11464_consen 6 NIIESYIKQAKAARRFDEVATLEENLREL 34 (42)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55666667777777777777777666665
No 73
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=35.74 E-value=57 Score=23.94 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=15.8
Q ss_pred ceEEEEEEEEEeCCCCCeE
Q 027566 185 QYFFAYRVRITNNSERPVQ 203 (222)
Q Consensus 185 rYvFaY~ItIeN~s~~tVQ 203 (222)
.-++.|.++|.|.+..+|.
T Consensus 16 ~~y~qy~v~I~N~~~~~I~ 34 (80)
T PF09478_consen 16 QTYTQYDVTITNNGSKPIK 34 (80)
T ss_pred EEEEEEEEEEEECCCCeEE
Confidence 3569999999999987764
No 74
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=35.47 E-value=44 Score=24.75 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q 027566 122 RLRRLMKEAVAEERFEDAARYRDK 145 (222)
Q Consensus 122 ~L~~~L~~AV~eErYE~AA~lRD~ 145 (222)
-..++.++.+...+|++||++-..
T Consensus 8 l~~~~F~~l~~~g~y~eAA~~AA~ 31 (66)
T PF13838_consen 8 LYVQQFNELFSQGQYEEAAKVAAN 31 (66)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 367889999999999999998544
No 75
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=35.32 E-value=1.4e+02 Score=20.03 Aligned_cols=60 Identities=22% Similarity=0.406 Sum_probs=41.9
Q ss_pred HHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCCC
Q 027566 94 VAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSL 154 (222)
Q Consensus 94 ~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~~ 154 (222)
-++++++|++|.+.-+.+-.+...++....... .-.+..++|++|...=+..=++.|+..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a-~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRA-RCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHH-HHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 356789999999998888777666665433322 234566788888887777777766543
No 76
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.13 E-value=85 Score=29.63 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchH
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPI 120 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv 120 (222)
.+.-..|...|++||+..|.++|.+|-||-+.|-..-+-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar 292 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSAR 292 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHH
Confidence 366778999999999999999999999999777655443
No 77
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.84 E-value=90 Score=30.40 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=16.6
Q ss_pred ceEEEEEEEEEeCCCCCeEE
Q 027566 185 QYFFAYRVRITNNSERPVQL 204 (222)
Q Consensus 185 rYvFaY~ItIeN~s~~tVQL 204 (222)
.+.|.|+|+|+|..+.+|.|
T Consensus 441 ~~~~~~~i~v~N~~~~~v~v 460 (525)
T TIGR02231 441 RTEYAYRITLKNLRKEPERV 460 (525)
T ss_pred EEEEEEEEEEEcCCCCceEE
Confidence 57899999999998766655
No 78
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=33.82 E-value=2.3e+02 Score=26.29 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=30.8
Q ss_pred cchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCC
Q 027566 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNS 153 (222)
Q Consensus 99 EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~ 153 (222)
++|++|...-++.-.+...++...++. =......++|++|...=++.-+|.|+-
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~~a~~~l-g~~~~~lg~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLAKAYLRK-GTACMKLEEYQTAKAALEKGASLAPGD 103 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 666666665555545544444332222 123345677888877777777776665
No 79
>PLN03077 Protein ECB2; Provisional
Probab=32.91 E-value=4.7e+02 Score=26.76 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=30.1
Q ss_pred HHhhhHHHHHHHHHHhhhhCCCCCCCcceeeccCCeEEEEEeEEecCcccCC
Q 027566 131 VAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPL 182 (222)
Q Consensus 131 V~eErYE~AA~lRD~i~~L~p~~~~~~~s~a~T~gIkV~V~t~Ylpe~S~P~ 182 (222)
....++++|+++|..+++-.-.+..-|+...+. | .|..+...+.+.|.
T Consensus 702 a~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~-~---~~~~f~~~d~~h~~ 749 (857)
T PLN03077 702 ADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK-G---KVHAFLTDDESHPQ 749 (857)
T ss_pred HHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC-C---EEEEEecCCCCCcc
Confidence 357789999999999999654444233333332 2 34555566666554
No 80
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=32.82 E-value=1.8e+02 Score=20.61 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=29.3
Q ss_pred HHHHhccchHHHHHHHHHhhhhcccchH--HHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCC
Q 027566 93 EVAAKTEDYKEAARIRDSLRSFEEEEPI--FRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (222)
Q Consensus 93 ~~AIk~EdyE~AA~LRDeI~~l~~~Dpv--~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~ 152 (222)
..+++.++|++|...-+++.....+++. ......-....+.++|++|..+=..+-.+.|+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 3444556666666665555433333221 12233334455556666666655555554443
No 81
>PRK11020 hypothetical protein; Provisional
Probab=31.95 E-value=2.3e+02 Score=23.41 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 118 Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
|.+..++++|..|...++-+-.|.+.+++..|.
T Consensus 12 drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~ 44 (118)
T PRK11020 12 DRLDAIRHKLAAASLRGDAEKYAQFEKEKATLE 44 (118)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 455777788888888887777777777777653
No 82
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.76 E-value=3.2e+02 Score=25.89 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHH
Q 027566 80 SRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIF 121 (222)
Q Consensus 80 gc~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~ 121 (222)
.|...=+.||.+=+++++.++|++|...-.+--+|--++||.
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy 117 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY 117 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH
Confidence 477778999999999999999999999988888888889884
No 83
>PF15067 FAM124: FAM124 family
Probab=30.73 E-value=2.6e+02 Score=25.57 Aligned_cols=84 Identities=15% Similarity=0.309 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHhhhhCCCC--CCCcceeec-cCCeEEEEEeEEecCcccCCC-CceEEEEEEEEEeCC------CCCe
Q 027566 133 EERFEDAARYRDKLKEIAPNS--LLKCLSDAT-TLGIRVQVRSVYIEDRSQPLK-GQYFFAYRVRITNNS------ERPV 202 (222)
Q Consensus 133 eErYE~AA~lRD~i~~L~p~~--~~~~~s~a~-T~gIkV~V~t~Ylpe~S~P~~-~rYvFaY~ItIeN~s------~~tV 202 (222)
-|+||+|.++=..|-.=+|.. ...|+++-- +.|+.|..+-..+|..-.|.. ...+-. .++++.| +.+|
T Consensus 138 ~~N~~d~vr~Yelil~~~~~~~k~~FC~F~lys~~~~~iQlsLK~lp~~~~p~p~esavLq--F~V~~igqLvpLLPnpc 215 (236)
T PF15067_consen 138 FDNYEDMVRFYELILQREPTQQKEDFCFFTLYSQPGLDIQLSLKQLPPGMSPEPTESAVLQ--FRVEDIGQLVPLLPNPC 215 (236)
T ss_pred CCCHHHHHHHHHHHhccCcceeeCCcEEEEEecCCCeEEEEEeccCCCCCCcccccceEEE--EEecchhhhcccCCCCc
Confidence 456777777666665444332 245665543 679999999999966544432 344444 4455554 4777
Q ss_pred EEee-ceEEEEcCCCcE
Q 027566 203 QLLR-RHWIITDANGKT 218 (222)
Q Consensus 203 QLls-RhW~ItD~~G~v 218 (222)
--+| -+|..+|-||..
T Consensus 216 ~PIS~~rWqT~D~DGNk 232 (236)
T PF15067_consen 216 SPISETRWQTEDYDGNK 232 (236)
T ss_pred ccccCCcceeeCCCCCE
Confidence 7777 679999999975
No 84
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=30.56 E-value=1.6e+02 Score=27.30 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=31.8
Q ss_pred HhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCC
Q 027566 96 AKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNS 153 (222)
Q Consensus 96 Ik~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~ 153 (222)
.++++++.|...-.+..+...+..+......-+-++...+|++|...=+++.++.|+.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~ 186 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH 186 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 4556666666655554333333333333333556666666777666666666665554
No 85
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=30.37 E-value=1.5e+02 Score=21.58 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=14.6
Q ss_pred cchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhH
Q 027566 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERF 136 (222)
Q Consensus 99 EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErY 136 (222)
+.+.+...+|.++ ..++.+|..++..+.+
T Consensus 56 ~~~~~~~~~r~~~---------~~~r~~l~~ll~~~~~ 84 (125)
T PF13801_consen 56 EFRQEMRALRQEL---------RAARQELRALLAAPPP 84 (125)
T ss_dssp HHHHHHHHHHHHH---------HHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHcCCCC
Confidence 3344455555555 4555555555555544
No 86
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=29.82 E-value=2.2e+02 Score=27.64 Aligned_cols=30 Identities=30% Similarity=0.266 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 120 v~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
+..|-.+=++|-++-+|+.|=+|||+|.++
T Consensus 418 ~~~li~~R~~aR~~Kdf~~AD~IRd~L~~~ 447 (463)
T PRK00260 418 IEALIEERQEARKAKDFALADAIRDELAAL 447 (463)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Confidence 345544556677788899999999999887
No 87
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=29.14 E-value=77 Score=32.13 Aligned_cols=50 Identities=22% Similarity=0.195 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHH
Q 027566 85 YALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYR 143 (222)
Q Consensus 85 ye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lR 143 (222)
.+.|...=..||..|||..|-.++||| .+|+.+.=.-+.---.|||-..+
T Consensus 209 leelEndKgcAVadEDfdlAkdkkdei---------ealRaeilaqldlhlLeDaelhl 258 (666)
T KOG4825|consen 209 LEELENDKGCAVADEDFDLAKDKKDEI---------EALRAEILAQLDLHLLEDAELHL 258 (666)
T ss_pred HHHHhhcccccccchhhhHHHHHHHHH---------HHHHHHHHHhcChhhhhhhHhhc
Confidence 333444444566669999999999999 55555555555544456665444
No 88
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=28.73 E-value=1.4e+02 Score=20.76 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=27.6
Q ss_pred HhccchHHHHHHHHHhhhhcc-cchHHHHHHHHHHHHHhh
Q 027566 96 AKTEDYKEAARIRDSLRSFEE-EEPIFRLRRLMKEAVAEE 134 (222)
Q Consensus 96 Ik~EdyE~AA~LRDeI~~l~~-~Dpv~~L~~~L~~AV~eE 134 (222)
.+-++|++|.+.-+.+-+++- +.+...|+..++..|+.|
T Consensus 12 ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kd 51 (53)
T PF14853_consen 12 YKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKD 51 (53)
T ss_dssp HHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHT
T ss_pred HHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhcc
Confidence 345889999988888877763 455668888888877765
No 89
>PF12137 RapA_C: RNA polymerase recycling family C-terminal; InterPro: IPR022737 This domain is found in bacteria. This domain is about 360 amino acids in length. This domain is found associated with PF00271 from PFAM, PF00176 from PFAM. The function of this domain is not known, but structurally it forms an alpha-beta fold in nature with a central beta-sheet flanked by helices and loops, the beta-sheet being mainly antiparallel and flanked by four alpha helices, among which the two longer helices exhibit a coiled-coil arrangement. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 3DMQ_A.
Probab=28.72 E-value=2e+02 Score=27.63 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhh----------HHHHHHHHHHhhhhCC
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEER----------FEDAARYRDKLKEIAP 151 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eEr----------YE~AA~lRD~i~~L~p 151 (222)
.-|+.|+.+|.+++...+.+....|-.+- ..+..+|+..+++.| -+.|..|-++|.+..-
T Consensus 38 ~v~~~f~~~L~~~l~~~~~~~~~~Li~~t---------~~~~~~L~~~Le~GRDrLLElnS~~~~~A~~L~~~I~~~d~ 107 (362)
T PF12137_consen 38 AVYEQFGDELEDLLAQPDREALDALIAET---------RALRQQLKAQLEQGRDRLLELNSCRPERAEELIEAIEEEDN 107 (362)
T ss_dssp HHHHHHHHHHHHHHH----TTHHHHHHHH---------HHHHHHHHHHHHTT--TTHHHHTT--HHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHH---------HHHHHHHHHHHHhCcHHHHHHhcCCcHHHHHHHHHHHHhcC
Confidence 67899999999999866444444444444 566666666666665 4777777777777653
No 90
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=27.74 E-value=3.1e+02 Score=22.69 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHhhhhcc-----c------chHHHHHH---HHHHHHH----hhhHHHHHHHHHHhh
Q 027566 86 ALLKQQMEVAAKTEDYKEAARIRDSLRSFEE-----E------EPIFRLRR---LMKEAVA----EERFEDAARYRDKLK 147 (222)
Q Consensus 86 e~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~-----~------Dpv~~L~~---~L~~AV~----eErYE~AA~lRD~i~ 147 (222)
+.|+..|..|++..|-.....||--+.++.. . +-+..|+. +.++|++ ..|-+.|+..+.++.
T Consensus 2 e~l~~dlk~AMKakD~~r~~~lr~~~a~i~~~e~~~~~~l~d~~v~~vi~k~iKqr~ea~e~y~~agR~dlae~e~~Ei~ 81 (143)
T PF09424_consen 2 ERLRKDLKAAMKAKDKVRLNTLRMLLAAIKNAEKDKGRELTDEEVIAVIRKEIKQRKEAAEQYEKAGRPDLAEKEQAEIE 81 (143)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4688899999999888888888666655542 1 11223322 3333333 355566777777776
Q ss_pred hhC---CCCC
Q 027566 148 EIA---PNSL 154 (222)
Q Consensus 148 ~L~---p~~~ 154 (222)
-|+ |..+
T Consensus 82 iL~~yLP~~l 91 (143)
T PF09424_consen 82 ILEEYLPKQL 91 (143)
T ss_dssp HHGGGS----
T ss_pred HHHHhCcCCC
Confidence 665 6554
No 91
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=27.17 E-value=1.1e+02 Score=30.36 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHhhhhcccchH--HHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCC
Q 027566 99 EDYKEAARIRDSLRSFEEEEPI--FRLRRLMKEAVAEERFEDAARYRDKLKEIAPNS 153 (222)
Q Consensus 99 EdyE~AA~LRDeI~~l~~~Dpv--~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~ 153 (222)
+...+-...|+|..--.++-.. .+|+..++.|++..+=++|+.|-++|..|+.+.
T Consensus 344 keis~~V~~k~e~~~k~sNvi~eKt~Lrqkrq~A~e~~n~k~~~ey~~qL~~~E~~~ 400 (521)
T COG5296 344 KEISKMVACKDEVHPKRSNVIHEKTELRQKRQRAIELKNKKAAMEYQRQLEEIEDNE 400 (521)
T ss_pred hHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Confidence 6666666667777555554333 399999999999999999999999999997443
No 92
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=26.38 E-value=6.1e+02 Score=28.32 Aligned_cols=148 Identities=16% Similarity=0.254 Sum_probs=84.9
Q ss_pred ceeeEEEeecCCCCCCC-------------CCC-------CCCCCCcccccChHHHHHHHHHHHHHHHhcc---------
Q 027566 49 RTYGIVACVGGGGGGSG-------------GGG-------ERLSSSARSFLSRSQAYALLKQQMEVAAKTE--------- 99 (222)
Q Consensus 49 ~~~~~~~~~~~~~~~~~-------------~~~-------~~~~~~~~~~~gc~~cye~Lk~qL~~AIk~E--------- 99 (222)
.---|+-|+|.||-+.+ .|| +-..++..-+.||+.-|+-|-..|..-|+.+
T Consensus 108 Kv~dviDctGaGDVDts~~v~~~edg~I~G~SGrtLkl~~~wknPtg~~~VG~K~~yel~pk~lr~rv~a~~k~k~wd~~ 187 (1304)
T KOG1114|consen 108 KVKDVIDCTGAGDVDTSTEVTAAEDGTITGLSGRTLKLSASWKNPTGKWRVGLKLAYELFPKDLRSRVQAKRKEKDWDKS 187 (1304)
T ss_pred ceeEEEecCCCCccccceEEeeccCceEecccCceEEcccccCCCCcceEeccchHHHhchHHHHHHHHHHHhhhccCch
Confidence 34457788877765432 222 2234566778999999999999999888842
Q ss_pred chHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHH-HHHHHhhhhC-CCCCCCcceeeccCCeEEEEEeEE---
Q 027566 100 DYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAA-RYRDKLKEIA-PNSLLKCLSDATTLGIRVQVRSVY--- 174 (222)
Q Consensus 100 dyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA-~lRD~i~~L~-p~~~~~~~s~a~T~gIkV~V~t~Y--- 174 (222)
+-..++..-+++.+++...|=..++...+. ..|+++--. -|.-.-+... |-|...|..=-.-++-+|-+.+.+
T Consensus 188 h~~a~a~A~~~~~efe~~~~g~~~k~~~k~--~rEdl~~kve~Lks~a~ky~D~gpvyD~vvwhdgE~Wrv~iDt~~~Gd 265 (1304)
T KOG1114|consen 188 HRKALAEATRKLAEFEDKNPGASLKKDNKQ--TREDLQSKVEFLKSLAKKYDDPGPVYDVVVWHDGEVWRVCIDTDETGD 265 (1304)
T ss_pred hHHHHHHHHHHHHHHHhhCCCccchhhhHH--HHHHHHHHHHHHHHHHHhcCCCCcceEEEEeecCCeEEEEecccccCc
Confidence 223344556666666655544433322222 223332211 1222222232 666666665555678899999998
Q ss_pred ------ecCcccCCCCceE-----EEEEEEEEeCC
Q 027566 175 ------IEDRSQPLKGQYF-----FAYRVRITNNS 198 (222)
Q Consensus 175 ------lpe~S~P~~~rYv-----FaY~ItIeN~s 198 (222)
+.+.+...+-.+| -+|+|++.-.|
T Consensus 266 l~~~~~L~~~~~t~e~~~f~~~d~l~ysV~vyd~g 300 (1304)
T KOG1114|consen 266 LYLHKVLGEFNETGEYATFGSLDLLSYSVNVYDDG 300 (1304)
T ss_pred cccccccccccccccccccccccccceeEEEccCC
Confidence 6666555444432 34888877544
No 93
>PRK10404 hypothetical protein; Provisional
Probab=25.22 E-value=3.4e+02 Score=21.34 Aligned_cols=46 Identities=11% Similarity=0.240 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhc---cchHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 027566 82 SQAYALLKQQMEVAAKT---EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVA 132 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~---EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~ 132 (222)
...+..|-..++.+++. +.-+++..||+++ +..+..++..|..+-.
T Consensus 11 ~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~-----~~~L~~ar~~l~~~~~ 59 (101)
T PRK10404 11 DDDLTLLSETLEEVLRSSGDPADQKYVELKARA-----EKALDDVKKRVSQASD 59 (101)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----HHHHHHHHHHHHHhHH
Confidence 45566666666666655 5556666777776 3344455555555444
No 94
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=24.88 E-value=1.9e+02 Score=20.91 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=15.9
Q ss_pred eEEEEEeEEecCcccCCCCceEEEEEEEEEeC
Q 027566 166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNN 197 (222)
Q Consensus 166 IkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN~ 197 (222)
++|+|...+-. -....++|.|.|+..+.
T Consensus 4 ~~v~v~~~~~~----~~~~~~~~~~~i~~~~~ 31 (113)
T PF00787_consen 4 IQVSVVDPETS----GNKKKTYYIYQIELQDG 31 (113)
T ss_dssp EEEEEEEEEEE----SSSSEEEEEEEEEETTS
T ss_pred EEEEEcCCEEE----cCCCEEEEEEEEEECCC
Confidence 45666655544 23445666666666554
No 95
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=24.55 E-value=2.5e+02 Score=20.70 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027566 82 SQAYALLKQQMEVAAKT 98 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~ 98 (222)
...+..|+.+|+.+.++
T Consensus 4 ea~~~~Lr~rLd~~~rk 20 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRK 20 (69)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567788888888777
No 96
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.59 E-value=3e+02 Score=30.43 Aligned_cols=77 Identities=25% Similarity=0.379 Sum_probs=46.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHHHhc--cchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 027566 70 RLSSSARSFLSRSQAYALLKQQMEVAAKT--EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147 (222)
Q Consensus 70 ~~~~~~~~~~gc~~cye~Lk~qL~~AIk~--EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~ 147 (222)
..+.........+..+..++..|..+=.. |.|+.-.++|.+|.+|+.+- ..|+.+-.+-..+ =..|-++||+++
T Consensus 164 p~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~--~klrqe~~e~l~e--a~ra~~yrdeld 239 (1195)
T KOG4643|consen 164 PYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEI--SKLRQEIEEFLDE--AHRADRYRDELD 239 (1195)
T ss_pred cchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--HHhhhhhhhHHH
Confidence 33444555566667777777777655444 78888888999995555431 1222221111111 146778999999
Q ss_pred hhC
Q 027566 148 EIA 150 (222)
Q Consensus 148 ~L~ 150 (222)
+|.
T Consensus 240 alr 242 (1195)
T KOG4643|consen 240 ALR 242 (1195)
T ss_pred HHH
Confidence 986
No 97
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=23.44 E-value=1.1e+02 Score=24.56 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 027566 121 FRLRRLMKEAVA 132 (222)
Q Consensus 121 ~~L~~~L~~AV~ 132 (222)
..|+.+|++++.
T Consensus 13 ~kLqe~lk~~e~ 24 (98)
T PRK13848 13 AKLQEQLKQAET 24 (98)
T ss_pred HHHHHHHHHHHH
Confidence 555555555553
No 98
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=23.29 E-value=2.2e+02 Score=23.85 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=43.5
Q ss_pred HHHHHHHhccchHHHHHHHHHhhhhcccchHH--HHHHHH---HHHHHhhhHHHHHHHHHHhhhhCCCCC
Q 027566 90 QQMEVAAKTEDYKEAARIRDSLRSFEEEEPIF--RLRRLM---KEAVAEERFEDAARYRDKLKEIAPNSL 154 (222)
Q Consensus 90 ~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~--~L~~~L---~~AV~eErYE~AA~lRD~i~~L~p~~~ 154 (222)
.+=+.++++++|++|++ .++.|....|-+ .-+.+| -.-.++.+|++|+.-=|.+-+|-|..+
T Consensus 15 ~~a~~~l~~~~Y~~A~~---~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIK---QLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHhCCHHHHHH---HHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 34467788999999966 555567777764 122233 344788999999998888888876554
No 99
>PRK13202 ureB urease subunit beta; Reviewed
Probab=23.24 E-value=76 Score=25.65 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=20.6
Q ss_pred EEEEEEEeCCCCCeEEeeceEEEEcCCC
Q 027566 189 AYRVRITNNSERPVQLLRRHWIITDANG 216 (222)
Q Consensus 189 aY~ItIeN~s~~tVQLlsRhW~ItD~~G 216 (222)
+-+|+++|.+|.|||.=| |+++...|.
T Consensus 22 ~~~l~V~NtGDRPIQVGS-HyHF~E~N~ 48 (104)
T PRK13202 22 RLQMRIINAGDRPVQVGS-HVHLPQANR 48 (104)
T ss_pred eEEEEEEeCCCCceEEcc-ccchhhcCc
Confidence 468899999999999866 556655553
No 100
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=23.14 E-value=1.3e+02 Score=23.41 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 118 Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
|.+...-..++++|++|++++|...-+++.+.
T Consensus 26 ~~i~~~l~~i~~~i~~~dW~~A~~~~~~l~~~ 57 (121)
T PF14276_consen 26 DSIEEQLEQIEEAIENEDWEKAYKETEELEKE 57 (121)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45566678889999999999999988888764
No 101
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=22.87 E-value=92 Score=29.93 Aligned_cols=66 Identities=27% Similarity=0.467 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhc------------------cchHHHHHHHHHhhhhcccchHHHHHHHHHHH--HHhhhHHHH-HH
Q 027566 83 QAYALLKQQMEVAAKT------------------EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEA--VAEERFEDA-AR 141 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~------------------EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~A--V~eErYE~A-A~ 141 (222)
..|+.+++-.+.|.+. -|=...-+=+++.++.+..||+.+|++-|-.. +.+|+.++. ++
T Consensus 235 avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~~DPi~r~~~~L~~~g~~see~~~~i~~e 314 (358)
T COG1071 235 AVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKKRDPIVRLRKYLIEAGILSEEELEAIEAE 314 (358)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhccChHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5677777777777665 11112223367788888899999999999887 556655332 34
Q ss_pred HHHHhhh
Q 027566 142 YRDKLKE 148 (222)
Q Consensus 142 lRD~i~~ 148 (222)
+++++++
T Consensus 315 ~~~~V~e 321 (358)
T COG1071 315 AKAEVDE 321 (358)
T ss_pred HHHHHHH
Confidence 4455544
No 102
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=22.72 E-value=5.5e+02 Score=24.00 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhc-----cchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q 027566 82 SQAYALLKQQMEVAAKT-----EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~-----EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~ 148 (222)
+.+-+..+.+|+.-|.. ..-+.-+++.++|++|.++..+.+++.++=.++.+.-.-+--.|+-+++.
T Consensus 65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~ 136 (292)
T KOG4005|consen 65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELEL 136 (292)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35667777888776655 44455677899999999888887766666666655544444444444443
No 103
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=22.50 E-value=3.8e+02 Score=22.53 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=37.0
Q ss_pred hccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHH
Q 027566 97 KTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARY 142 (222)
Q Consensus 97 k~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~l 142 (222)
++.....+...|++|.+|=........+..-++-|.++.+-+|-.+
T Consensus 15 ~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~ 60 (165)
T PF03398_consen 15 QNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEI 60 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577778888899999998888888888899999999987766543
No 104
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=22.42 E-value=2e+02 Score=20.25 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=20.0
Q ss_pred HhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHH
Q 027566 96 AKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARY 142 (222)
Q Consensus 96 Ik~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~l 142 (222)
.+.++|++|..+-++ ..+....+-....- =+-.++..+|++|...
T Consensus 36 ~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~-a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 36 FQQGKYEEAIELLQK-LKLDPSNPDIHYLL-ARCLLKLGKYEEAIKA 80 (84)
T ss_dssp HHTTHHHHHHHHHHC-HTHHHCHHHHHHHH-HHHHHHTT-HHHHHHH
T ss_pred HHCCCHHHHHHHHHH-hCCCCCCHHHHHHH-HHHHHHhCCHHHHHHH
Confidence 344666666666555 22222111112211 3445666666666543
No 105
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=22.40 E-value=1.5e+02 Score=24.65 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhhCCC
Q 027566 122 RLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (222)
Q Consensus 122 ~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~ 152 (222)
.+....++++++++|.-|+.|-|.+-...|+
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~ 102 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPD 102 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 4555666778888888888888887776665
No 106
>PRK13203 ureB urease subunit beta; Reviewed
Probab=22.27 E-value=81 Score=25.42 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEEEeCCCCCeEEeeceEEEEcCC
Q 027566 189 AYRVRITNNSERPVQLLRRHWIITDAN 215 (222)
Q Consensus 189 aY~ItIeN~s~~tVQLlsRhW~ItD~~ 215 (222)
+-+|++.|.+|.|||.=| |+++...|
T Consensus 21 ~~~l~V~NtGDRPIQVGS-H~HF~E~N 46 (102)
T PRK13203 21 TVTLTVANTGDRPIQVGS-HYHFFEVN 46 (102)
T ss_pred EEEEEEEeCCCCceEEcc-ccchhhcC
Confidence 578999999999999866 55555555
No 107
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=22.24 E-value=2.9e+02 Score=19.43 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=13.7
Q ss_pred EEEEEEEEEeCCCCCe
Q 027566 187 FFAYRVRITNNSERPV 202 (222)
Q Consensus 187 vFaY~ItIeN~s~~tV 202 (222)
...|+|+++|.|..+.
T Consensus 42 ~v~ytitvtN~G~~~a 57 (76)
T PF01345_consen 42 TVTYTITVTNTGPAPA 57 (76)
T ss_pred EEEEEEEEEECCCCee
Confidence 6799999999997664
No 108
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=21.84 E-value=1.5e+02 Score=21.57 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=30.2
Q ss_pred ccCCeEEEEEeEEecCccc--CCCCceEEEEEEEEEeCCCCCeEE-eeceEE
Q 027566 162 TTLGIRVQVRSVYIEDRSQ--PLKGQYFFAYRVRITNNSERPVQL-LRRHWI 210 (222)
Q Consensus 162 ~T~gIkV~V~t~Ylpe~S~--P~~~rYvFaY~ItIeN~s~~tVQL-lsRhW~ 210 (222)
.++++.+ +...|.|..+. .....-...++++....|...++| ..|.|.
T Consensus 28 ~~~~l~l-~~~~~~~~~~~~~~vG~~g~~~f~f~a~~~G~~~i~~~y~r~we 78 (92)
T PF09394_consen 28 DSDGLQL-VSEEYIPDNSPSGLVGAPGTRTFTFKALKPGTTTIKFEYRRPWE 78 (92)
T ss_dssp STTTEEE-EEEEEEESSTSSTSSTSSEEEEEEEEESSSEEEEEEEEEEBTTT
T ss_pred CCCeEEE-cCCcEEeCCCCcCCCCCCcEEEEEEEEecCeeEEEEEEEECcCC
Confidence 3567777 78899998655 333334445555666666666666 556663
No 109
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=21.73 E-value=83 Score=25.31 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=21.1
Q ss_pred EEEEEEEeCCCCCeEEeeceEEEEcCCC
Q 027566 189 AYRVRITNNSERPVQLLRRHWIITDANG 216 (222)
Q Consensus 189 aY~ItIeN~s~~tVQLlsRhW~ItD~~G 216 (222)
+-+|++.|.+|.+||.=| |+++...|.
T Consensus 21 ~~~l~V~NtGDRpIQVGS-H~HF~E~N~ 47 (101)
T cd00407 21 AVTLKVKNTGDRPIQVGS-HYHFFEVNP 47 (101)
T ss_pred EEEEEEEeCCCcceEEcc-ccchhhcCc
Confidence 578999999999999866 556665553
No 110
>PF15058 Speriolin_N: Speriolin N terminus
Probab=21.68 E-value=2e+02 Score=25.81 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhhhhccc
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEE 117 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~ 117 (222)
..|+-|++||+.+|. +-++||++.+-|+++
T Consensus 5 ~~yeGlrhqierLv~-----ENeeLKKlVrLirEN 34 (200)
T PF15058_consen 5 TNYEGLRHQIERLVR-----ENEELKKLVRLIREN 34 (200)
T ss_pred cchHHHHHHHHHHHh-----hhHHHHHHHHHHHHH
Confidence 469999999999994 445566666555544
No 111
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=21.61 E-value=2.9e+02 Score=19.22 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcc-cchHHHHHHHHHHHHH
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE-EEPIFRLRRLMKEAVA 132 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~-~Dpv~~L~~~L~~AV~ 132 (222)
.-++.|+..|.......+. +..+++++..++. +.+|..--..+++.+.
T Consensus 27 ~~W~~~~~~~~~~f~~~~~--~~~~~~~l~~l~Q~~esv~~y~~rf~~l~~ 75 (96)
T PF03732_consen 27 ITWEEFKDAFRKRFFPPDR--KEQARQELNSLRQGNESVREYVNRFRELAR 75 (96)
T ss_pred CCHHHHHHHHHHHHhhhhc--cccchhhhhhhhccCCcHHHHHHHHHHHHH
Confidence 3577888888877766543 3345777777776 6777654444444443
No 112
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=21.60 E-value=85 Score=25.26 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=20.9
Q ss_pred EEEEEEEeCCCCCeEEeeceEEEEcCCC
Q 027566 189 AYRVRITNNSERPVQLLRRHWIITDANG 216 (222)
Q Consensus 189 aY~ItIeN~s~~tVQLlsRhW~ItD~~G 216 (222)
+-+|++.|.+|.|||.=| |+++...|.
T Consensus 21 ~~~l~V~NtGDRPIQVGS-HyHF~E~N~ 47 (101)
T TIGR00192 21 TVSVKVKNTGDRPIQVGS-HFHFFEVNR 47 (101)
T ss_pred EEEEEEEeCCCcceEEcc-ccchhhcCc
Confidence 468999999999999866 556665553
No 113
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=21.54 E-value=1.4e+02 Score=25.56 Aligned_cols=38 Identities=18% Similarity=0.431 Sum_probs=33.0
Q ss_pred cchHHHHHHHHHhhhhc-ccchHHHHHHHHHHHHHhhhH
Q 027566 99 EDYKEAARIRDSLRSFE-EEEPIFRLRRLMKEAVAEERF 136 (222)
Q Consensus 99 EdyE~AA~LRDeI~~l~-~~Dpv~~L~~~L~~AV~eErY 136 (222)
++|+++.++-|.+-+.+ .++.+..|++-++.+|..|=+
T Consensus 85 keY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itkegl 123 (149)
T KOG3364|consen 85 KEYSKSLRYVDALLETEPNNRQALELKETIEDKITKEGL 123 (149)
T ss_pred hhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcce
Confidence 89999999999988887 568888999999999988865
No 114
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=21.50 E-value=86 Score=25.19 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=16.8
Q ss_pred EEEEEEEeCCCCCeEEeeceEEEEcCC
Q 027566 189 AYRVRITNNSERPVQLLRRHWIITDAN 215 (222)
Q Consensus 189 aY~ItIeN~s~~tVQLlsRhW~ItD~~ 215 (222)
.-+|++.|.+|.+||.=| |+++...|
T Consensus 20 ~~~l~V~N~GDRPIQVGS-H~HF~E~N 45 (100)
T PF00699_consen 20 RITLEVTNTGDRPIQVGS-HYHFFEVN 45 (100)
T ss_dssp EEEEEEEE-SSS-EEEET-TS-GGGS-
T ss_pred EEEEEEEeCCCcceEEcc-ccCHHHHh
Confidence 668999999999999866 44444444
No 115
>TIGR02756 TraK_Ftype type-F conjugative transfer system secretin TraK. The TraK protein is predicted to interact with the TraV and TraB proteins as part of the scaffold which extends from the inner membrane, through the periplasm to the cell envelope and through which the F-type conjugative pilus passes. TraK is homologous to the P-type IV secretion system protein TrbG, the Ti-type protein VirB9 and the I-type TraN protein. The protein is related to the secretin family especially the HrcC subgroup of the type III secretion system. The protein is hypothesized to oligomerize to form a ring structure akin to other secretins.
Probab=21.41 E-value=5e+02 Score=23.07 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=30.3
Q ss_pred cCCeEEEEEeEEecCcccCCCCceEEEEEEEEEeCCCCCeEEeec
Q 027566 163 TLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRR 207 (222)
Q Consensus 163 T~gIkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN~s~~tVQLlsR 207 (222)
..|+++.-...|.+.+ +=.|..+++|.++.++.|..+
T Consensus 167 ~~gl~~~~~~~y~G~~--------l~g~~y~l~N~s~~~~~L~E~ 203 (232)
T TIGR02756 167 PAGLSVRPDAVWTGNH--------LKGERFELENKTNSPLELTES 203 (232)
T ss_pred CCCcEEEEeEEEECCC--------cEEEEEEEEcCCCCCeEechH
Confidence 6789999999998753 457778899999999998764
No 116
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=21.16 E-value=3.9e+02 Score=25.29 Aligned_cols=44 Identities=18% Similarity=0.520 Sum_probs=28.0
Q ss_pred HHHHHhhhhcc-cchHH-----------HHHHHHHHHHHhhhH------------HHHHHHHHHhhhh
Q 027566 106 RIRDSLRSFEE-EEPIF-----------RLRRLMKEAVAEERF------------EDAARYRDKLKEI 149 (222)
Q Consensus 106 ~LRDeI~~l~~-~Dpv~-----------~L~~~L~~AV~eErY------------E~AA~lRD~i~~L 149 (222)
.++.-|++|+. +|.++ .+...|++||+..-| |..-+|+|+.+.|
T Consensus 109 ql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardl 176 (333)
T KOG1853|consen 109 QLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDL 176 (333)
T ss_pred HHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44666666653 45553 566789999976543 4566788886554
No 117
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=21.02 E-value=2.6e+02 Score=24.68 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc-ccchHHHHHHHHHHHHHhhhH
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE-EEEPIFRLRRLMKEAVAEERF 136 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~-~~Dpv~~L~~~L~~AV~eErY 136 (222)
+.+...|+.+|.++=..---..|...++-=.+=+ +.|.+-.|+..+.+-+++=+|
T Consensus 111 r~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~ 166 (179)
T PF14723_consen 111 RRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEF 166 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777764432211122222221111111 113445666666666655555
No 118
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=20.67 E-value=1.5e+02 Score=22.45 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=12.2
Q ss_pred EEEEEEEEeCCCCCe
Q 027566 188 FAYRVRITNNSERPV 202 (222)
Q Consensus 188 FaY~ItIeN~s~~tV 202 (222)
|.+.|+|+|.++.++
T Consensus 15 f~~~v~v~N~~~~~i 29 (101)
T PF00553_consen 15 FQGEVTVTNNGSSPI 29 (101)
T ss_dssp EEEEEEEEESSSSTE
T ss_pred eEEEEEEEECCCCcc
Confidence 788999999887654
No 119
>PF13317 DUF4088: Protein of unknown function (DUF4088)
Probab=20.61 E-value=2.2e+02 Score=25.79 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=33.7
Q ss_pred ccchHHHHHHHHHHHHHhhhH--HHHHHHHHHhhhhCCCCC
Q 027566 116 EEEPIFRLRRLMKEAVAEERF--EDAARYRDKLKEIAPNSL 154 (222)
Q Consensus 116 ~~Dpv~~L~~~L~~AV~eErY--E~AA~lRD~i~~L~p~~~ 154 (222)
..+.+++|+-.|.-+++-..+ ++|.++=.+++.++|+-+
T Consensus 168 ~R~klGelR~lL~L~~~yGs~q~~eaq~vmE~l~~~~P~lF 208 (229)
T PF13317_consen 168 GREKLGELRGLLRLGLAYGSVQKQEAQRVMEQLRRLKPELF 208 (229)
T ss_pred HHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHhCcHHh
Confidence 456779999999999998887 899999999999988765
No 120
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.59 E-value=4.6e+02 Score=23.62 Aligned_cols=32 Identities=9% Similarity=0.249 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 118 Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
..+.+....|+..+++.+|..|..+-.+...+
T Consensus 125 ~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 125 KTVQQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33457788899999999999999998888776
No 121
>PRK10941 hypothetical protein; Provisional
Probab=20.59 E-value=1.3e+02 Score=27.35 Aligned_cols=75 Identities=21% Similarity=0.262 Sum_probs=47.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHHHHhccchHHHHHH-HHHhhhhcccchHHHHHHHHHHH-HHhhhHHHHHHHHHHhhh
Q 027566 71 LSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARI-RDSLRSFEEEEPIFRLRRLMKEA-VAEERFEDAARYRDKLKE 148 (222)
Q Consensus 71 ~~~~~~~~~gc~~cye~Lk~qL~~AIk~EdyE~AA~L-RDeI~~l~~~Dpv~~L~~~L~~A-V~eErYE~AA~lRD~i~~ 148 (222)
.++-.+..+....|-+-|+..+.+. +++ .+-++.....+-+.++-+.|+.+ +.+++|+.|-+.-+.+=.
T Consensus 139 IDPf~G~~L~~~~l~~~L~~~~g~~---------~~l~~~~L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~ 209 (269)
T PRK10941 139 INPFNGETLDEHTLEVWLKGNISPS---------AELFNEDLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQ 209 (269)
T ss_pred EeCCCCCCCCHHHHHHHHHhhcCCc---------ccCCHHHcCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3554577777777766666554432 111 11112222223347888888887 678889999999999999
Q ss_pred hCCCCC
Q 027566 149 IAPNSL 154 (222)
Q Consensus 149 L~p~~~ 154 (222)
|.|+.+
T Consensus 210 l~P~dp 215 (269)
T PRK10941 210 FDPEDP 215 (269)
T ss_pred hCCCCH
Confidence 988764
No 122
>PF00932 LTD: Lamin Tail Domain; InterPro: IPR001322 Intermediate filaments (IF) are primordial components of the cytoskeleton and the nuclear envelope []. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups, type I: acidic cytokeratins, type II: basic cytokeratins, type III: vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin, type IV: neurofilaments L, H and M, alpha-internexin and nestin, and type V: nuclear lamins A, B1, B2 and C. The lamins are components of the nuclear lamina, a fibrous layer on the nucleoplasmic side of the inner nuclear membrane that may provide a framework for the nuclear envelope and may interact with chromatin. All IF proteins are structurally similar in that they consist of a central rod domain arranged in coiled-coil alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. The C-terminal domain has been charcterised for the lamins.; PDB: 3UMN_A 2KPW_A 3JT0_A 2LLL_A 1UFG_A 3GEF_D 1IFR_A 1IVT_A.
Probab=20.54 E-value=84 Score=23.74 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=16.3
Q ss_pred EEEEeCCCCCeEEeeceEEEEcCC
Q 027566 192 VRITNNSERPVQLLRRHWIITDAN 215 (222)
Q Consensus 192 ItIeN~s~~tVQLlsRhW~ItD~~ 215 (222)
|.|.|.++.+|.|-. |.|.|.+
T Consensus 28 VEl~N~~~~~vdL~g--w~L~~~~ 49 (116)
T PF00932_consen 28 VELYNPGDSTVDLSG--WKLVDSN 49 (116)
T ss_dssp EEEEE-SSS-EEGTT---EEEEEE
T ss_pred EEEEECCCCcEeecc--EEEEECC
Confidence 899999999999975 8888763
No 123
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=20.21 E-value=1.1e+02 Score=25.04 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=29.4
Q ss_pred ccchHHHHHHHHHhhh-------hcccchHHHHHHHHHHHHHhhhH
Q 027566 98 TEDYKEAARIRDSLRS-------FEEEEPIFRLRRLMKEAVAEERF 136 (222)
Q Consensus 98 ~EdyE~AA~LRDeI~~-------l~~~Dpv~~L~~~L~~AV~eErY 136 (222)
+||.|.|.++-++..+ +=.++.+..+.+.|++.+++|+|
T Consensus 50 ~EDpe~ai~~I~d~s~~aV~I~TVV~~~~~~~i~~~i~ekL~~ery 95 (110)
T PF10126_consen 50 DEDPEMAIKAINDLSENAVLIGTVVDEEKVEKIEKLIKEKLKNERY 95 (110)
T ss_pred ccCHHHHHHHHHHhccCcEEEEEEECHHHHHHHHHHHHHHhcCCce
Confidence 4899999887555421 12456678999999999999998
No 124
>PF15368 BioT2: Spermatogenesis family BioT2
Probab=20.06 E-value=1.1e+02 Score=26.65 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=41.6
Q ss_pred CCcccccChHHHHHHHHHHHHHHHhc---------cchHHHHHHHHHhhh--hcccchH-------HHHHHHHHHHHHhh
Q 027566 73 SSARSFLSRSQAYALLKQQMEVAAKT---------EDYKEAARIRDSLRS--FEEEEPI-------FRLRRLMKEAVAEE 134 (222)
Q Consensus 73 ~~~~~~~gc~~cye~Lk~qL~~AIk~---------EdyE~AA~LRDeI~~--l~~~Dpv-------~~L~~~L~~AV~eE 134 (222)
+.+...+.-.+-+...-..|+-.|.. ++-|+++. +-+..+ |.-.|++ .++-.+|++||++|
T Consensus 72 sktkell~~de~irkitkhLkmvVstLEeTyG~~~~~gek~~~-kpE~ee~~lsvgdD~~SFL~~CS~faaQLEeAvKEE 150 (170)
T PF15368_consen 72 SKTKELLSEDEMIRKITKHLKMVVSTLEETYGLDIQNGEKPIV-KPEQEELSLSVGDDMNSFLLCCSQFAAQLEEAVKEE 150 (170)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCccccccccccc-CCccccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667666677777777766655 44444443 455555 5556776 38899999999999
Q ss_pred h
Q 027566 135 R 135 (222)
Q Consensus 135 r 135 (222)
+
T Consensus 151 ~ 151 (170)
T PF15368_consen 151 R 151 (170)
T ss_pred H
Confidence 8
Done!