Query 027566
Match_columns 222
No_of_seqs 241 out of 771
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 20:06:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1e_A Protein APAG; APAG prot 99.9 1.7E-24 5.9E-29 174.5 8.7 63 159-221 2-64 (127)
2 1xvs_A Protein APAG; MCSG APC2 99.9 3.5E-24 1.2E-28 172.6 8.6 62 160-221 2-63 (126)
3 1tza_A APAG protein, SOR45; st 99.9 9.3E-24 3.2E-28 171.8 8.8 61 161-221 3-63 (134)
4 1xq4_A Protein APAG; all beta 99.9 1.1E-23 3.7E-28 172.4 8.5 65 157-221 4-68 (139)
5 1e52_A Excinuclease ABC subuni 97.9 8.1E-06 2.8E-10 58.6 3.4 30 121-150 27-56 (63)
6 1e52_A Excinuclease ABC subuni 97.2 0.00024 8.1E-09 50.9 3.5 35 81-115 22-56 (63)
7 2d7d_A Uvrabc system protein B 96.6 0.0015 5.3E-08 63.2 4.6 31 120-150 628-658 (661)
8 1c4o_A DNA nucleotide excision 95.7 0.0017 5.7E-08 63.0 0.0 34 119-152 612-645 (664)
9 2d7d_A Uvrabc system protein B 94.9 0.019 6.4E-07 55.6 4.1 36 81-116 624-659 (661)
10 1c4o_A DNA nucleotide excision 93.0 0.018 6.1E-07 55.8 0.0 36 81-116 609-644 (664)
11 3cfu_A Uncharacterized lipopro 88.5 2.5 8.6E-05 34.2 8.8 59 161-219 8-80 (159)
12 3nrf_A APAG protein; structura 87.4 1.2 4.1E-05 34.8 5.8 58 161-218 2-59 (106)
13 3pxg_A Negative regulator of g 75.0 4.8 0.00016 36.9 6.0 29 121-149 404-432 (468)
14 3pxg_A Negative regulator of g 72.9 3 0.0001 38.2 4.2 48 75-131 393-440 (468)
15 1gp8_A Protein (scaffolding pr 72.0 6.7 0.00023 25.7 4.4 32 83-114 8-39 (40)
16 3hho_A CO-chaperone protein HS 71.4 12 0.00042 30.3 7.1 59 84-147 97-156 (174)
17 3uo3_A J-type CO-chaperone JAC 67.1 14 0.00047 30.4 6.6 37 118-154 132-178 (181)
18 2dba_A Smooth muscle cell asso 62.8 34 0.0012 23.4 9.5 70 84-153 27-98 (148)
19 3kxe_C Antitoxin protein PARD- 62.5 7.1 0.00024 29.0 3.6 49 87-135 13-63 (88)
20 1gp8_A Protein (scaffolding pr 61.8 13 0.00043 24.4 4.2 31 120-150 10-40 (40)
21 1fpo_A HSC20, chaperone protei 61.7 29 0.00099 28.0 7.5 59 84-147 94-152 (171)
22 3v1a_A Computational design, M 57.1 17 0.00059 24.5 4.4 30 121-150 11-40 (48)
23 3frr_A Uncharacterized protein 46.8 32 0.0011 28.8 5.6 59 84-142 9-73 (191)
24 2xev_A YBGF; tetratricopeptide 46.7 64 0.0022 21.7 7.1 55 97-151 14-70 (129)
25 1yzm_A FYVE-finger-containing 46.0 36 0.0012 23.2 4.6 29 121-149 12-40 (51)
26 2ho1_A Type 4 fimbrial biogene 45.4 96 0.0033 23.4 8.3 67 85-152 37-103 (252)
27 2fbn_A 70 kDa peptidylprolyl i 44.5 95 0.0033 23.1 9.4 69 84-152 37-120 (198)
28 3us6_A Histidine-containing ph 44.1 61 0.0021 25.5 6.6 59 89-147 57-120 (153)
29 2y4t_A DNAJ homolog subfamily 43.6 1.3E+02 0.0043 24.9 8.8 72 81-153 22-93 (450)
30 1sr2_A Putative sensor-like hi 43.0 68 0.0023 24.2 6.4 59 90-148 49-110 (116)
31 2lni_A Stress-induced-phosphop 42.6 72 0.0025 21.1 8.1 66 86-152 17-82 (133)
32 1z0k_B FYVE-finger-containing 41.4 42 0.0014 24.2 4.6 34 81-114 25-58 (69)
33 2fzt_A Hypothetical protein TM 40.9 1.1E+02 0.0036 22.6 8.3 41 85-125 4-44 (79)
34 2p06_A Hypothetical protein AF 40.3 24 0.00082 26.9 3.4 25 121-148 66-90 (114)
35 3syn_E ATP-binding protein YLX 39.6 16 0.00054 21.0 1.7 17 133-149 3-19 (23)
36 2d2s_A Exocyst complex compone 39.2 76 0.0026 26.9 6.8 51 83-133 16-72 (235)
37 2yru_A Steroid receptor RNA ac 37.9 99 0.0034 23.8 6.7 67 80-146 10-87 (118)
38 1wjt_A Transcription elongatio 37.9 34 0.0012 25.9 4.0 74 78-151 7-87 (103)
39 3he5_B Synzip2; heterodimeric 34.0 98 0.0034 20.7 5.2 12 139-150 33-44 (52)
40 1z0j_B FYVE-finger-containing 32.8 67 0.0023 22.5 4.4 29 121-149 19-47 (59)
41 3he4_B Synzip5; heterodimeric 32.8 54 0.0018 21.5 3.7 34 107-140 8-42 (46)
42 2pe4_A Hyaluronidase-1; hyalur 32.5 65 0.0022 30.4 5.7 83 76-160 78-190 (424)
43 2k48_A Nucleoprotein; viral pr 32.3 1.2E+02 0.0041 23.5 6.2 14 121-134 92-105 (107)
44 1yvi_A Histidine-containing ph 32.3 1.2E+02 0.0041 23.4 6.5 60 89-148 58-122 (149)
45 3mq7_A Bone marrow stromal ant 30.6 1.4E+02 0.0046 23.7 6.4 55 80-149 50-104 (121)
46 3lay_A Zinc resistance-associa 30.4 67 0.0023 26.5 4.9 10 138-147 132-141 (175)
47 1a17_A Serine/threonine protei 29.9 1.4E+02 0.0047 20.6 7.0 53 97-149 93-146 (166)
48 3myf_A Sensor protein; HPT, hi 29.4 1.8E+02 0.006 21.7 7.7 63 87-149 35-105 (119)
49 4dzo_A Mitotic spindle assembl 29.3 1.9E+02 0.0065 22.4 7.1 44 137-190 29-72 (123)
50 2dq0_A Seryl-tRNA synthetase; 29.1 1.8E+02 0.0061 27.0 8.0 38 132-170 89-128 (455)
51 3uo3_A J-type CO-chaperone JAC 28.9 1.5E+02 0.0052 24.0 6.8 28 84-111 133-160 (181)
52 3bs6_A Inner membrane protein 28.8 99 0.0034 26.2 5.9 35 164-205 102-136 (280)
53 3mkr_A Coatomer subunit epsilo 28.8 1.3E+02 0.0044 24.7 6.4 57 95-152 210-267 (291)
54 2kc7_A BFR218_protein; tetratr 28.0 1.2E+02 0.0042 19.5 8.2 61 94-154 9-69 (99)
55 2fzt_A Hypothetical protein TM 27.2 77 0.0026 23.4 4.1 31 120-150 4-34 (79)
56 1gmj_A ATPase inhibitor; coile 27.2 34 0.0012 25.5 2.3 17 77-93 23-39 (84)
57 3qou_A Protein YBBN; thioredox 26.8 2E+02 0.007 23.2 7.3 59 93-152 125-183 (287)
58 1kt0_A FKBP51, 51 kDa FK506-bi 26.8 3.3E+02 0.011 23.9 9.1 69 84-152 267-349 (457)
59 1ses_A Seryl-tRNA synthetase; 26.8 3.7E+02 0.012 24.5 9.9 48 121-170 74-122 (421)
60 2ra1_A Surface layer protein; 26.4 1.6E+02 0.0056 27.6 7.1 71 83-153 101-206 (412)
61 3upv_A Heat shock protein STI1 26.3 1.5E+02 0.0052 20.0 8.5 64 88-152 7-70 (126)
62 3ggy_A Increased sodium tolera 26.1 1.9E+02 0.0066 24.1 7.0 58 85-142 9-72 (193)
63 3blc_A Inner membrane protein 26.1 1.3E+02 0.0043 26.3 6.2 34 164-204 133-166 (330)
64 3bvo_A CO-chaperone protein HS 25.8 1.3E+02 0.0045 25.0 5.9 27 121-147 165-191 (207)
65 2a0b_A HPT domain; sensory tra 25.7 1.2E+02 0.0041 22.3 5.2 56 90-145 45-103 (125)
66 1p5q_A FKBP52, FK506-binding p 25.6 2.9E+02 0.01 23.0 9.1 68 86-153 148-229 (336)
67 2v6v_A BUD emergence protein 1 25.1 1.2E+02 0.0042 23.9 5.5 28 163-198 16-43 (156)
68 2wol_A ORF15, clavulanic acid 24.2 17 0.00057 33.3 0.1 20 45-64 2-21 (562)
69 1elr_A TPR2A-domain of HOP; HO 24.1 1.5E+02 0.0052 19.2 5.8 57 96-152 49-111 (131)
70 2eje_A General transcription f 23.9 94 0.0032 24.4 4.3 36 71-107 5-40 (114)
71 2vgx_A Chaperone SYCD; alterna 23.5 2.1E+02 0.0073 20.7 9.4 69 84-153 20-88 (148)
72 3tuf_A Stage III sporulation p 23.3 3E+02 0.01 23.2 7.7 33 70-102 81-113 (197)
73 2lf0_A Uncharacterized protein 23.2 39 0.0013 26.9 2.0 41 107-149 8-48 (123)
74 3ffl_A Anaphase-promoting comp 22.4 1.8E+02 0.0063 23.8 6.1 58 87-144 22-87 (167)
75 3mv2_A Coatomer subunit alpha; 22.3 2.8E+02 0.0095 25.1 7.8 33 121-153 208-240 (325)
76 2ic6_A Nucleocapsid protein; h 22.1 1.8E+02 0.0063 21.3 5.4 15 121-135 62-76 (78)
77 1pc2_A Mitochondria fission pr 21.7 3E+02 0.01 21.8 8.0 53 100-154 50-105 (152)
78 2yhc_A BAMD, UPF0169 lipoprote 21.4 2.7E+02 0.0093 21.2 8.7 63 92-154 11-75 (225)
79 4ep8_B Urease subunit beta; al 21.3 61 0.0021 25.0 2.7 26 189-215 21-46 (101)
80 2p32_A Heat shock 70 kDa prote 21.2 1.5E+02 0.0052 22.0 5.0 24 75-98 13-36 (120)
81 3u3w_A Transcriptional activat 20.8 3.2E+02 0.011 21.7 9.2 68 82-149 72-144 (293)
82 3qc1_A Immunoglobulin-binding 20.8 2E+02 0.0068 24.6 6.2 57 99-157 35-91 (243)
83 2ic9_A Nucleocapsid protein; h 20.8 1.8E+02 0.006 22.2 5.2 16 120-135 61-76 (96)
84 2xev_A YBGF; tetratricopeptide 20.6 1.9E+02 0.0066 19.1 7.3 58 96-153 50-109 (129)
85 2d2s_A Exocyst complex compone 20.5 1.3E+02 0.0044 25.4 4.9 29 121-149 19-47 (235)
86 2dl1_A Spartin; SPG20, MIT, st 20.3 1.6E+02 0.0054 23.0 5.0 36 80-115 14-53 (116)
87 2xpi_A Anaphase-promoting comp 20.1 3.1E+02 0.011 23.6 7.4 64 84-149 83-146 (597)
No 1
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=99.91 E-value=1.7e-24 Score=174.49 Aligned_cols=63 Identities=40% Similarity=0.777 Sum_probs=58.4
Q ss_pred eeeccCCeEEEEEeEEecCcccCCCCceEEEEEEEEEeCCCCCeEEeeceEEEEcCCCcEEec
Q 027566 159 SDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENI 221 (222)
Q Consensus 159 s~a~T~gIkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN~s~~tVQLlsRhW~ItD~~G~v~eV 221 (222)
++++|+||+|+|.|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|+++||
T Consensus 2 ~~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV 64 (127)
T 2f1e_A 2 QDDPRYRVEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTEQV 64 (127)
T ss_dssp ----CCCEEEEEEEEECSTTCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEE
T ss_pred ccceECCEEEEEEEEEchhhCCCcCCEEEEEEEEEEEeCCCCCEEEEeceEEEEeCCCCEEEE
Confidence 468899999999999999999999999999999999999999999999999999999999997
No 2
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=99.90 E-value=3.5e-24 Score=172.59 Aligned_cols=62 Identities=42% Similarity=0.735 Sum_probs=60.2
Q ss_pred eeccCCeEEEEEeEEecCcccCCCCceEEEEEEEEEeCCCCCeEEeeceEEEEcCCCcEEec
Q 027566 160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENI 221 (222)
Q Consensus 160 ~a~T~gIkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN~s~~tVQLlsRhW~ItD~~G~v~eV 221 (222)
+.+|+||+|+|.|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|+++||
T Consensus 2 ~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV 63 (126)
T 1xvs_A 2 DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVV 63 (126)
T ss_dssp BCSCCCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEE
T ss_pred CcccCCEEEEEEEEEchhcCCCcCCEEEEEEEEEEEECCCCCEEEEecEEEEEeCCCCEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999997
No 3
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=99.89 E-value=9.3e-24 Score=171.79 Aligned_cols=61 Identities=48% Similarity=0.809 Sum_probs=59.6
Q ss_pred eccCCeEEEEEeEEecCcccCCCCceEEEEEEEEEeCCCCCeEEeeceEEEEcCCCcEEec
Q 027566 161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENI 221 (222)
Q Consensus 161 a~T~gIkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN~s~~tVQLlsRhW~ItD~~G~v~eV 221 (222)
++|+||+|+|.|.|+|++|+|.+.+|+|+|+|||+|.++.+|||++|||+|+|++|+++||
T Consensus 3 ~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV 63 (134)
T 1tza_A 3 ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEV 63 (134)
T ss_dssp CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEE
T ss_pred CccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999997
No 4
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=99.89 E-value=1.1e-23 Score=172.38 Aligned_cols=65 Identities=37% Similarity=0.706 Sum_probs=60.5
Q ss_pred cceeeccCCeEEEEEeEEecCcccCCCCceEEEEEEEEEeCCCCCeEEeeceEEEEcCCCcEEec
Q 027566 157 CLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENI 221 (222)
Q Consensus 157 ~~s~a~T~gIkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN~s~~tVQLlsRhW~ItD~~G~v~eV 221 (222)
.....+|+||+|+|.|.|+|++|+|.+.+|+|+|+|||+|.++.+|||++|||+|+|++|+++||
T Consensus 4 ~~~~~tT~gI~V~V~~~y~~e~S~p~~~~y~FaY~ItI~N~~~~~vQL~sRhW~ItD~~G~~~eV 68 (139)
T 1xq4_A 4 RERPVKPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEV 68 (139)
T ss_dssp ---CCCSSCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEECTTSCEEEE
T ss_pred cccccccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997
No 5
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=97.88 E-value=8.1e-06 Score=58.61 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 121 FRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 121 ~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
..|+.+|++|.++++||+||+|||+|+.|+
T Consensus 27 ~~Le~~M~~AA~~leFE~AA~lRD~I~~L~ 56 (63)
T 1e52_A 27 HELEGLMMQHAQNLEFEEAAQIRDQLHQLR 56 (63)
T ss_dssp HHHHHHHHHHHHTTCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666653
No 6
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=97.21 E-value=0.00024 Score=50.94 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhc
Q 027566 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (222)
Q Consensus 81 c~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~ 115 (222)
...-+..|+.+|..|++..+||+||++||+|+.|+
T Consensus 22 ~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~ 56 (63)
T 1e52_A 22 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999995554
No 7
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.59 E-value=0.0015 Score=63.16 Aligned_cols=31 Identities=39% Similarity=0.458 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 120 v~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
+..|+++|++|.++++||+||+|||+|++|+
T Consensus 628 i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~ 658 (661)
T 2d7d_A 628 VEQMEHEMKEAAKALDFERAAELRDLLLELK 658 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999996
No 8
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.74 E-value=0.0017 Score=62.96 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCC
Q 027566 119 PIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (222)
Q Consensus 119 pv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~ 152 (222)
-+..|+++|++|.++++||+||+|||+|++|+..
T Consensus 612 ~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~ 645 (664)
T 1c4o_A 612 RIAELELAMWQAAEALDFERAARLRDEIRALEAR 645 (664)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999754
No 9
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.86 E-value=0.019 Score=55.61 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcc
Q 027566 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116 (222)
Q Consensus 81 c~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~ 116 (222)
..+-+..|+.+|..|.+..+||+||++||+|++|+.
T Consensus 624 ~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~ 659 (661)
T 2d7d_A 624 RQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA 659 (661)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence 446788999999999999999999999999987764
No 10
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=92.97 E-value=0.018 Score=55.76 Aligned_cols=36 Identities=36% Similarity=0.471 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcc
Q 027566 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116 (222)
Q Consensus 81 c~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~ 116 (222)
....++.|+.+|.+|++..+||+||+|||+|++|+.
T Consensus 609 ~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~ 644 (664)
T 1c4o_A 609 LRERIAELELAMWQAAEALDFERAARLRDEIRALEA 644 (664)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 446788999999999999999999999999966654
No 11
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=88.48 E-value=2.5 Score=34.20 Aligned_cols=59 Identities=12% Similarity=0.028 Sum_probs=42.8
Q ss_pred eccCCeEEEEEeEEecC---c--------ccC---CCCceEEEEEEEEEeCCCCCeEEeeceEEEEcCCCcEE
Q 027566 161 ATTLGIRVQVRSVYIED---R--------SQP---LKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTE 219 (222)
Q Consensus 161 a~T~gIkV~V~t~Ylpe---~--------S~P---~~~rYvFaY~ItIeN~s~~tVQLlsRhW~ItD~~G~v~ 219 (222)
....+++|+|...-... . ..| .++.-+..-.|||+|.|+.+...-.=.|.+.|++|+..
T Consensus 8 v~~~~~evTVnsv~~~~~~e~~~~~~~~~~~p~~~~~G~~fviV~VTIeN~g~e~~~~s~~~F~L~d~dG~~~ 80 (159)
T 3cfu_A 8 FKAGHTNFTVNKVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMENIGEDSISYNFIGFDLRDKNDQSV 80 (159)
T ss_dssp EEETTEEEEEEEEEEECSSCBEESSCC------CBCCCSEEEEEEEEEEECSSSCEEEEGGGEEEECTTCCBC
T ss_pred EEECCEEEEEEEEEEcCCCceeecccccccCccccCCCCEEEEEEEEEEECCCCceeeCcccEEEEeCCCCEE
Confidence 33467899987753321 2 345 56655678999999999999998878899999999753
No 12
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=87.37 E-value=1.2 Score=34.84 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=50.4
Q ss_pred eccCCeEEEEEeEEecCcccCCCCceEEEEEEEEEeCCCCCeEEeeceEEEEcCCCcE
Q 027566 161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKT 218 (222)
Q Consensus 161 a~T~gIkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN~s~~tVQLlsRhW~ItD~~G~v 218 (222)
+++++|.|-..+.=.+.-|.+.+..|-=+|.|.|.|.++.++.|-.=...-++.+|+.
T Consensus 2 ~~~d~v~V~At~k~~GS~s~~~k~~ytktFdV~vaNl~~~~idLsk~C~~a~~~~gke 59 (106)
T 3nrf_A 2 AAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQS 59 (106)
T ss_dssp ---CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECCSSSCEECTTCEEEEEETTSCE
T ss_pred CCcCcEEEEeeccccccEEeCCeeEEEEEEEEEEecCCCCccccchhhheeeCcCCCE
Confidence 4688999999999899889888888999999999999999999999999999888864
No 13
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=74.95 E-value=4.8 Score=36.88 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 121 FRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 121 ~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
.+|..+.+.++..++|++|+.|++++.+|
T Consensus 404 ~~l~~~~~~~~~~~d~~~~~~l~~~~~~~ 432 (468)
T 3pxg_A 404 DEVRKEKDAAVQSQEFEKAASLRDTEQRL 432 (468)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 44444455555555555555555555444
No 14
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=72.87 E-value=3 Score=38.20 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=39.0
Q ss_pred cccccChHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Q 027566 75 ARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAV 131 (222)
Q Consensus 75 ~~~~~gc~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV 131 (222)
+.........++.++.++..++..++|++|+.|++++ ..|+.+|++.-
T Consensus 393 p~~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~---------~~~~~~~~~~~ 440 (468)
T 3pxg_A 393 PPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTE---------QRLREQVEDTK 440 (468)
T ss_dssp CSSTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 4445556678888888899999999999999999999 77777777644
No 15
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=72.04 E-value=6.7 Score=25.67 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhhhh
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSF 114 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l 114 (222)
+.++.+++||..|-..++|+.+-.|..+++.|
T Consensus 8 d~I~aiEQqiyvA~seGd~etv~~Le~QL~~l 39 (40)
T 1gp8_A 8 ANKDAIRKQMDAAASKGDVETYRKLKAKLKGI 39 (40)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 55666666666666666666666666665443
No 16
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=71.40 E-value=12 Score=30.28 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhccc-hHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 027566 84 AYALLKQQMEVAAKTED-YKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147 (222)
Q Consensus 84 cye~Lk~qL~~AIk~Ed-yE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~ 147 (222)
....++++|..+-..++ -..-..|..+| ...+..+..+|.++++.++|+.|+.+-.+++
T Consensus 97 e~me~rE~le~~~~~~d~~~~l~~l~~~~-----~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~ 156 (174)
T 3hho_A 97 EQMELREELESVTACADPEAALVAFDTKV-----TAMQRHYLAQLQGQLAQSEWLAAADQIRKLK 156 (174)
T ss_dssp HHHHHHHHHHHHTSSSSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45666777776665555 22233344444 2334788899999999999999997655444
No 17
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=67.11 E-value=14 Score=30.39 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHHHhhhHHHHHH----------HHHHhhhhCCCCC
Q 027566 118 EPIFRLRRLMKEAVAEERFEDAAR----------YRDKLKEIAPNSL 154 (222)
Q Consensus 118 Dpv~~L~~~L~~AV~eErYE~AA~----------lRD~i~~L~p~~~ 154 (222)
..+..+..+|.+|++.++|+.|+. |.++|++.+|..+
T Consensus 132 ~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ik~we~g~~ 178 (181)
T 3uo3_A 132 ERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKDWAPGKQ 178 (181)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCTTCC
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 344788889999999999999984 4566666666543
No 18
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.80 E-value=34 Score=23.41 Aligned_cols=70 Identities=14% Similarity=0.074 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccch--HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCC
Q 027566 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEP--IFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNS 153 (222)
Q Consensus 84 cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dp--v~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~ 153 (222)
....+...-..+++.++|++|..+-++.-.+..+++ ...+...-.......+|++|..+-++.-.+.|+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 445566666677788999999988777655544432 2222333334566778888888777776666543
No 19
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=62.53 E-value=7.1 Score=28.97 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhccchHHH-HHHHHHhhhhcccc-hHHHHHHHHHHHHHhhh
Q 027566 87 LLKQQMEVAAKTEDYKEA-ARIRDSLRSFEEEE-PIFRLRRLMKEAVAEER 135 (222)
Q Consensus 87 ~Lk~qL~~AIk~EdyE~A-A~LRDeI~~l~~~D-pv~~L~~~L~~AV~eEr 135 (222)
.|..-++..|+.+.|..+ ..+|+-|+.++..+ .+..|+..|..+++...
T Consensus 13 ~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~~l~~Lr~~l~~G~~Sg~ 63 (88)
T 3kxe_C 13 HFQAFIDSQVADGRYGSASEVIRAGLRLLEENEAKLAALRAALIEGEESGF 63 (88)
T ss_dssp HHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCC
Confidence 466678888889999777 56688898887664 35678888888777655
No 20
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=61.84 E-value=13 Score=24.36 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 120 v~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
+..+..++-.|-.+.+||.+-.|.-+++.|+
T Consensus 10 I~aiEQqiyvA~seGd~etv~~Le~QL~~lR 40 (40)
T 1gp8_A 10 KDAIRKQMDAAASKGDVETYRKLKAKLKGIR 40 (40)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 3899999999999999999999999998774
No 21
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=61.69 E-value=29 Score=28.00 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 027566 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147 (222)
Q Consensus 84 cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~ 147 (222)
....++++|+.+-..++-..-..|..++ ...+..+..+|.++++.++|+.|+.+-.+++
T Consensus 94 e~me~rE~lee~~~~~d~~~l~~l~~~~-----~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~ 152 (171)
T 1fpo_A 94 EQLELREELDEIEQAKDEARLESFIKRV-----KKMFDTRHQLMVEQLDNETWDAAADTCRKLR 152 (171)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 3456666777654444422333334444 2334678888999999999999986554443
No 22
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=57.09 E-value=17 Score=24.51 Aligned_cols=30 Identities=13% Similarity=0.376 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 121 FRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 121 ~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
.-++.-+++|-+.-+||+.+.|..-+++|.
T Consensus 11 ~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~ 40 (48)
T 3v1a_A 11 KNIHSFIHQAKAAGRMDEVRTLQENLHQLM 40 (48)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 467777888888888888888888777774
No 23
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=46.78 E-value=32 Score=28.81 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhc------cchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHH
Q 027566 84 AYALLKQQMEVAAKT------EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARY 142 (222)
Q Consensus 84 cye~Lk~qL~~AIk~------EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~l 142 (222)
.+..+|.+|+-++.+ ++...+...|++|.+|=.+......+-.-+.-|.++.+-+|-.+
T Consensus 9 ~~~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~Ei 73 (191)
T 3frr_A 9 KAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEI 73 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666665555 77888888999999998887777777778888888876666554
No 24
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=46.68 E-value=64 Score=21.69 Aligned_cols=55 Identities=20% Similarity=0.120 Sum_probs=22.3
Q ss_pred hccchHHHHHHHHHhhhhcccchH--HHHHHHHHHHHHhhhHHHHHHHHHHhhhhCC
Q 027566 97 KTEDYKEAARIRDSLRSFEEEEPI--FRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (222)
Q Consensus 97 k~EdyE~AA~LRDeI~~l~~~Dpv--~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p 151 (222)
+.++|++|..+-+++-....+++. ..+...=.......+|++|..+=..+-.+.|
T Consensus 14 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p 70 (129)
T 2xev_A 14 KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP 70 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 445555555544444333333331 1111112223344555555544444444433
No 25
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=46.04 E-value=36 Score=23.20 Aligned_cols=29 Identities=14% Similarity=0.472 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 121 FRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 121 ~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
.-++.-+++|-++-+|++.+-|-.-+++|
T Consensus 12 ~~I~~~I~qAk~~~r~DEV~~Le~NLrEL 40 (51)
T 1yzm_A 12 HNITSFIRQAKAAGRMDEVRTLQENLRQL 40 (51)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 45666666777777777776666666655
No 26
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=45.41 E-value=96 Score=23.38 Aligned_cols=67 Identities=9% Similarity=-0.186 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCC
Q 027566 85 YALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (222)
Q Consensus 85 ye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~ 152 (222)
...+-..-.-....++|++|..+-++.-.+...++ ..+...-.......+|++|..+=.++-++.|.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA-DAHAALAVVFQTEMEPKLADEEYRKALASDSR 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 44455555555667888888877666555443333 22223333445566777777766666555443
No 27
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=44.50 E-value=95 Score=23.10 Aligned_cols=69 Identities=16% Similarity=0.021 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccch---------------HHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q 027566 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEP---------------IFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (222)
Q Consensus 84 cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dp---------------v~~L~~~L~~AV~eErYE~AA~lRD~i~~ 148 (222)
....+...=..+.+.++|++|..+-++.-.+...+| ...+...=......++|++|..+-++.-.
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344455555566677999999998877766655565 12222222334567788888877777666
Q ss_pred hCCC
Q 027566 149 IAPN 152 (222)
Q Consensus 149 L~p~ 152 (222)
+.|.
T Consensus 117 ~~p~ 120 (198)
T 2fbn_A 117 IDKN 120 (198)
T ss_dssp HSTT
T ss_pred hCcc
Confidence 6554
No 28
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=44.11 E-value=61 Score=25.55 Aligned_cols=59 Identities=10% Similarity=0.200 Sum_probs=42.2
Q ss_pred HHHHHHHHhcc--chHHHHHHHHHhhhhcc---cchHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 027566 89 KQQMEVAAKTE--DYKEAARIRDSLRSFEE---EEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147 (222)
Q Consensus 89 k~qL~~AIk~E--dyE~AA~LRDeI~~l~~---~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~ 147 (222)
=.+|..+++.+ |++....+-=.||.... ..++..+..+|+.+...++.+.+..+-.+|+
T Consensus 57 l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~ 120 (153)
T 3us6_A 57 LKDLSFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVK 120 (153)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566677766 88887776666665553 4788899999999999888877766544444
No 29
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=43.62 E-value=1.3e+02 Score=24.94 Aligned_cols=72 Identities=7% Similarity=-0.104 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCC
Q 027566 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNS 153 (222)
Q Consensus 81 c~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~ 153 (222)
-+...+.+-..-...++.++|++|..+-+++-.+...++ ..+...-......++|++|..+=.++-++.|+.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 93 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY-IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 345566666667777788899999888777655544333 333334445566677777777766666665543
No 30
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=43.00 E-value=68 Score=24.19 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=46.0
Q ss_pred HHHHHHHhccchHHHHHHHHHhhhhc---ccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q 027566 90 QQMEVAAKTEDYKEAARIRDSLRSFE---EEEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (222)
Q Consensus 90 ~qL~~AIk~EdyE~AA~LRDeI~~l~---~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~ 148 (222)
..|..++..++++....+-=+||..- +-.++..+..+|+++...+..+++..+-+.|..
T Consensus 49 ~~L~~A~~~~D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i~~L~~ 110 (116)
T 1sr2_A 49 KRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDS 110 (116)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777888889988887777776654 347778999999999999998777766666654
No 31
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=42.57 E-value=72 Score=21.12 Aligned_cols=66 Identities=11% Similarity=0.071 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCC
Q 027566 86 ALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (222)
Q Consensus 86 e~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~ 152 (222)
..+...-..+.+.++|++|..+-++.-.+...++. .+...-......++|++|..+=++.-++.|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK-LYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH-HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 33444444455667777777665555444333321 1111112234455666666555555555443
No 32
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=41.36 E-value=42 Score=24.18 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhh
Q 027566 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSF 114 (222)
Q Consensus 81 c~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l 114 (222)
..+.+..++.-|++|-+..+|++.+.|..-+++|
T Consensus 25 L~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL 58 (69)
T 1z0k_B 25 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQL 58 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4577777888888888888888888877766443
No 33
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=40.94 E-value=1.1e+02 Score=22.61 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHH
Q 027566 85 YALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRR 125 (222)
Q Consensus 85 ye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~ 125 (222)
+..+..+++.||++|+||.--.|-++-+.|-..-|-..|+.
T Consensus 4 I~EIEk~ID~aIE~edyE~L~~LL~kREkLlk~L~~e~l~~ 44 (79)
T 2fzt_A 4 IDEIERKIDEAIEKEDYETLLSLLNKRKELMEGLPKDKLSE 44 (79)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 56788999999999999999988666655544444444433
No 34
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=40.28 E-value=24 Score=26.95 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q 027566 121 FRLRRLMKEAVAEERFEDAARYRDKLKE 148 (222)
Q Consensus 121 ~~L~~~L~~AV~eErYE~AA~lRD~i~~ 148 (222)
..-+++|.+||++|++| .|||++-.
T Consensus 66 feemdelreavekedwe---nlrdelld 90 (114)
T 2p06_A 66 FEEMDELREAVEKEDWE---NLRDELLD 90 (114)
T ss_dssp HHHHHHHHHHHHTTCHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45678899999999998 47887644
No 35
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=39.64 E-value=16 Score=20.97 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHhhhh
Q 027566 133 EERFEDAARYRDKLKEI 149 (222)
Q Consensus 133 eErYE~AA~lRD~i~~L 149 (222)
-.+|..||.||..+.+-
T Consensus 3 mnrydqaatlrakmekr 19 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKR 19 (26)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 35788999999887653
No 36
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.21 E-value=76 Score=26.85 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchH------HHHHHHHHHHHHh
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPI------FRLRRLMKEAVAE 133 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv------~~L~~~L~~AV~e 133 (222)
+-++.+=++|+..|...+|++|..+-++++.+-.+.+- ..+...|+.+|.+
T Consensus 16 ~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~e 72 (235)
T 2d2s_A 16 KFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQ 72 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHH
Confidence 55677888999999999999999998877665443221 2344556666653
No 37
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.90 E-value=99 Score=23.84 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHHHHhc--cch-----HHHHH----HHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 027566 80 SRSQAYALLKQQMEVAAKT--EDY-----KEAAR----IRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146 (222)
Q Consensus 80 gc~~cye~Lk~qL~~AIk~--Edy-----E~AA~----LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i 146 (222)
.+...++.++..|+.++.. ..+ +.+.+ |-|.+..=.=..++..-..+|-+||+..+|+.|-.+--.|
T Consensus 10 ~~~~~i~~l~~~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l 87 (118)
T 2yru_A 10 ESETLIEDVLRPLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSL 87 (118)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666778888888887763 111 22221 1222222222567778889999999999999998876554
No 38
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=37.86 E-value=34 Score=25.87 Aligned_cols=74 Identities=8% Similarity=0.030 Sum_probs=46.9
Q ss_pred ccChHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchH------HHHHHHHHHHHHhhhH-HHHHHHHHHhhhhC
Q 027566 78 FLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPI------FRLRRLMKEAVAEERF-EDAARYRDKLKEIA 150 (222)
Q Consensus 78 ~~gc~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv------~~L~~~L~~AV~eErY-E~AA~lRD~i~~L~ 150 (222)
.++..+++..+..+|++++..++.+....+-.+++.+.-...+ +..-..|..--.+++. ..|..|-+.=|.+.
T Consensus 7 ~M~~e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~v 86 (103)
T 1wjt_A 7 GMGLEEELLRIAKKLEKMVSRKKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLL 86 (103)
T ss_dssp SSCSHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence 4455889999999999999988888888887777766533222 3444445444333333 34555555555554
Q ss_pred C
Q 027566 151 P 151 (222)
Q Consensus 151 p 151 (222)
+
T Consensus 87 ~ 87 (103)
T 1wjt_A 87 D 87 (103)
T ss_dssp C
T ss_pred H
Confidence 3
No 39
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=34.00 E-value=98 Score=20.69 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=9.4
Q ss_pred HHHHHHHhhhhC
Q 027566 139 AARYRDKLKEIA 150 (222)
Q Consensus 139 AA~lRD~i~~L~ 150 (222)
.|.|||+|..|+
T Consensus 33 ianlrdeiarle 44 (52)
T 3he5_B 33 IANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 477889888875
No 40
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=32.82 E-value=67 Score=22.50 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 121 FRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 121 ~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
.-++.-+++|-..-+|++.+-|-.-+++|
T Consensus 19 ~~I~~yI~qAk~~~R~DEV~~Le~NLrEL 47 (59)
T 1z0j_B 19 DNIKAYIFDAKQCGRLDEVEVLTENLREL 47 (59)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 56777778888888888888777777766
No 41
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=32.77 E-value=54 Score=21.51 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=24.1
Q ss_pred HHHHhhhhccc-chHHHHHHHHHHHHHhhhHHHHH
Q 027566 107 IRDSLRSFEEE-EPIFRLRRLMKEAVAEERFEDAA 140 (222)
Q Consensus 107 LRDeI~~l~~~-Dpv~~L~~~L~~AV~eErYE~AA 140 (222)
|++-|.+|++. -.+..|++-|+-|-++=+||-||
T Consensus 8 lknyiqeleernaelknlkehlkfakaelefelaa 42 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLKFAKAELEFELAA 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHh
Confidence 44445555443 33468889999999999999887
No 42
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG BMA MAN; 2.00A {Homo sapiens}
Probab=32.50 E-value=65 Score=30.35 Aligned_cols=83 Identities=22% Similarity=0.178 Sum_probs=50.1
Q ss_pred ccccChHHHHHHHHHHHHHHHhccchH-------------------HHHHHHH-HhhhhcccchHHHHHHHHHHHHHhhh
Q 027566 76 RSFLSRSQAYALLKQQMEVAAKTEDYK-------------------EAARIRD-SLRSFEEEEPIFRLRRLMKEAVAEER 135 (222)
Q Consensus 76 ~~~~gc~~cye~Lk~qL~~AIk~EdyE-------------------~AA~LRD-eI~~l~~~Dpv~~L~~~L~~AV~eEr 135 (222)
+..-....-++.++++|+..|-..+|. .-...|+ .|+-.+...|- +-..--+..|..+
T Consensus 78 PQ~g~L~~HL~k~~~dI~~~IP~~~f~GLaVIDwE~WRP~w~rNW~~k~iYr~~S~~Lv~~~hp~--ws~~~v~~~A~~~ 155 (424)
T 2pe4_A 78 PQNASLIAHLARTFQDILAAIPAPDFSGLAVIDWEAWRPRWAFNWDTKDIYRQRSRALVQAQHPD--WPAPQVEAVAQDQ 155 (424)
T ss_dssp GGGSCHHHHHHHHHHHHHHHCCCTTCCSEEEECCCSSCSSGGGCCGGGHHHHHHHHHHHHHHSSS--CCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCceEEEEccccccchhhcCcccHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHH
Confidence 344557788999999999999765552 1112222 23222333332 1122334678899
Q ss_pred HHHHHHH----H-HHhhhhCCCCC-----CCccee
Q 027566 136 FEDAARY----R-DKLKEIAPNSL-----LKCLSD 160 (222)
Q Consensus 136 YE~AA~l----R-D~i~~L~p~~~-----~~~~s~ 160 (222)
||.||+. - ...|+|+|+.+ -|.|+.
T Consensus 156 FE~aAr~FM~eTLkLak~lRP~~lWGyY~fP~CyN 190 (424)
T 2pe4_A 156 FQGAARAWMAGTLQLGRALRPRGLWGFYGFPDCYN 190 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSEEEEBTCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccCCCcccC
Confidence 9999986 2 33456889985 577754
No 43
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=32.31 E-value=1.2e+02 Score=23.53 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhh
Q 027566 121 FRLRRLMKEAVAEE 134 (222)
Q Consensus 121 ~~L~~~L~~AV~eE 134 (222)
.+|+++|..+|+.+
T Consensus 92 aeLKrqLAd~va~g 105 (107)
T 2k48_A 92 GELKRQLADLVAAQ 105 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 67777777777654
No 44
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=32.29 E-value=1.2e+02 Score=23.39 Aligned_cols=60 Identities=2% Similarity=0.031 Sum_probs=41.3
Q ss_pred HHHHHHHHhcc--chHHHHHHHHHhhhhc---ccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q 027566 89 KQQMEVAAKTE--DYKEAARIRDSLRSFE---EEEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (222)
Q Consensus 89 k~qL~~AIk~E--dyE~AA~LRDeI~~l~---~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~ 148 (222)
=..|..++..+ ||+....+-=.||.-. +-..+..+..+|+.+...++.+.+..+-++++.
T Consensus 58 l~~L~~Al~~~~~D~~~l~~~aH~LKGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 122 (149)
T 1yvi_A 58 INEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRN 122 (149)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566677665 6877776666665554 347778999999999999888766655444443
No 45
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=30.57 E-value=1.4e+02 Score=23.70 Aligned_cols=55 Identities=13% Similarity=0.247 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 80 SRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 80 gc~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
.|.+-...|+..|+.-..+. -..-.+|++|| ..|..+|+.|-+ ++-+||.+...|
T Consensus 50 TCNqTV~tL~~SL~~ekaq~-q~~vqeLqgEI---------~~Lnq~Lq~a~a-----e~erlr~~~~~~ 104 (121)
T 3mq7_A 50 TANHTVMALMASLDAEKAQG-QKKVEELEGEI---------TTLNHKLQDASA-----EVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---------HHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---------HHHHHHHHHHHH-----HHHHHHhhchhh
Confidence 35566666666666544443 23344555566 788888888765 456777776654
No 46
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.40 E-value=67 Score=26.46 Aligned_cols=10 Identities=0% Similarity=0.006 Sum_probs=4.2
Q ss_pred HHHHHHHHhh
Q 027566 138 DAARYRDKLK 147 (222)
Q Consensus 138 ~AA~lRD~i~ 147 (222)
.-+.++.++.
T Consensus 132 ~R~k~~~em~ 141 (175)
T 3lay_A 132 QRVKRDVAMA 141 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 47
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=29.90 E-value=1.4e+02 Score=20.62 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=36.4
Q ss_pred hccchHHHHHHHHHhhhhcccchHH-HHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 97 KTEDYKEAARIRDSLRSFEEEEPIF-RLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 97 k~EdyE~AA~LRDeI~~l~~~Dpv~-~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
..++|++|...-++.-.+...++.. .........++.++|++|..+-.....+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 4488999988877776666555543 3344445566788899988887776665
No 48
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=29.37 E-value=1.8e+02 Score=21.71 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHhhhhcc---cchHHHHHHHHHHHHHhhhH-----HHHHHHHHHhhhh
Q 027566 87 LLKQQMEVAAKTEDYKEAARIRDSLRSFEE---EEPIFRLRRLMKEAVAEERF-----EDAARYRDKLKEI 149 (222)
Q Consensus 87 ~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~---~Dpv~~L~~~L~~AV~eErY-----E~AA~lRD~i~~L 149 (222)
.-...|..++..++++....+-=+|+..-. -.++..+...|+++.+.+.- .....|-|+|..+
T Consensus 35 ~~~~~l~~a~~~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v 105 (119)
T 3myf_A 35 ETVEKIQTALGQNDQATMLSTIHKLHGASCYCGVPTTQRLCQEIESALKRQTPVEDLEPEILELLDELTKV 105 (119)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 344667788888888887777666665543 36667888999999988653 5567777777765
No 49
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=29.33 E-value=1.9e+02 Score=22.36 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhhCCCCCCCcceeeccCCeEEEEEeEEecCcccCCCCceEEEE
Q 027566 137 EDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAY 190 (222)
Q Consensus 137 E~AA~lRD~i~~L~p~~~~~~~s~a~T~gIkV~V~t~Ylpe~S~P~~~rYvFaY 190 (222)
+++..+|+.+-.| .-+.-+-+++| +++|.+.|.|... ...+|.|
T Consensus 29 ~ks~eFReav~~L-----lGykId~~~~~-~~rl~S~Ya~~~~----d~L~F~~ 72 (123)
T 4dzo_A 29 TKIQEFRKACYTL-----TGYQIDITTEN-QYRLTSLYAEHPG----DCLIFKA 72 (123)
T ss_dssp HHHHHHHHHHHHH-----HSEEEEEETTT-EEEEEETTCSSTT----CCEEEEE
T ss_pred HHHHHHHHHHHHH-----hCeEEEEccCC-eEEEEEeecCCCC----CeEEEEe
Confidence 3667788888876 23333334455 8999999998643 3467766
No 50
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=29.10 E-value=1.8e+02 Score=27.00 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=18.4
Q ss_pred HhhhHHHHHHHHHHhhhhCCCCCCCcceeec--cCCeEEEE
Q 027566 132 AEERFEDAARYRDKLKEIAPNSLLKCLSDAT--TLGIRVQV 170 (222)
Q Consensus 132 ~eErYE~AA~lRD~i~~L~p~~~~~~~s~a~--T~gIkV~V 170 (222)
+++-.+-.+.+.+.+-.| ||-+++.+-.-. .+++.|..
T Consensus 89 ~~~~~~~~~~~~~~~~~i-pN~~~~~vP~g~~e~~n~~~~~ 128 (455)
T 2dq0_A 89 ENEVEELKKKIDYYLWRL-PNITHPSVPVGKDENDNVPIRF 128 (455)
T ss_dssp HHHHHHHHHHHHHHHTTS-CCCCCTTSCCCSSGGGCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCCccCCCCCCCCCCEEEEE
Confidence 334444445555555444 666655543322 34555543
No 51
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=28.88 E-value=1.5e+02 Score=24.01 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHh
Q 027566 84 AYALLKQQMEVAAKTEDYKEAARIRDSL 111 (222)
Q Consensus 84 cye~Lk~qL~~AIk~EdyE~AA~LRDeI 111 (222)
.++.+..+|..++..++|+.|+.+-.++
T Consensus 133 ~~~~~~~~l~~~~~~~d~~~A~~~~~kL 160 (181)
T 3uo3_A 133 RIQDIEAQLGQCYNDKDYAAAVKLTVEL 160 (181)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3444455556666667777776654443
No 52
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli}
Probab=28.77 E-value=99 Score=26.22 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=26.2
Q ss_pred CCeEEEEEeEEecCcccCCCCceEEEEEEEEEeCCCCCeEEe
Q 027566 164 LGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLL 205 (222)
Q Consensus 164 ~gIkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN~s~~tVQLl 205 (222)
+|++|+-.=.|-+ +.|+|.+.++|.|.+..++++.
T Consensus 102 ~G~~~~ktytf~~-------~~Y~i~v~~~v~N~s~~~~~~~ 136 (280)
T 3bs6_A 102 AGNTFTKTFVLKR-------GDYAVNVNYNVQNAGEKPLEIS 136 (280)
T ss_dssp TCCEEEEEEEEET-------TCCEEEEEEEEECCSSSCEEEE
T ss_pred CCeEEEEEEEEcC-------CceEEEEEEEEEcCCCCceeEe
Confidence 4665555545543 4699999999999999988873
No 53
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.77 E-value=1.3e+02 Score=24.67 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHH-HHHHHhhhhCCC
Q 027566 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAA-RYRDKLKEIAPN 152 (222)
Q Consensus 95 AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA-~lRD~i~~L~p~ 152 (222)
..+.++|++|...-+++-++..++| ..+.....-.....++++|+ .+..++.++.|+
T Consensus 210 ~~~~g~~~eA~~~l~~al~~~p~~~-~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 210 HMAQGRWEAAEGVLQEALDKDSGHP-ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
No 54
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=28.02 E-value=1.2e+02 Score=19.46 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=38.2
Q ss_pred HHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCCC
Q 027566 94 VAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSL 154 (222)
Q Consensus 94 ~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~~ 154 (222)
..++.++|++|...-++.-++...++...+...=......++|++|...=++.-++.|+..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 3456688999988877776665555541122222234566788888877777777766543
No 55
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=27.22 E-value=77 Score=23.36 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhC
Q 027566 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (222)
Q Consensus 120 v~~L~~~L~~AV~eErYE~AA~lRD~i~~L~ 150 (222)
+..+.++...||++|+||.--.|=++=++|=
T Consensus 4 I~EIEk~ID~aIE~edyE~L~~LL~kREkLl 34 (79)
T 2fzt_A 4 IDEIERKIDEAIEKEDYETLLSLLNKRKELM 34 (79)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3677889999999999998877776665553
No 56
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.20 E-value=34 Score=25.54 Aligned_cols=17 Identities=0% Similarity=0.053 Sum_probs=7.3
Q ss_pred cccChHHHHHHHHHHHH
Q 027566 77 SFLSRSQAYALLKQQME 93 (222)
Q Consensus 77 ~~~gc~~cye~Lk~qL~ 93 (222)
+...++.+=..|+.+-.
T Consensus 23 gKrEaA~Ee~Yfrqkek 39 (84)
T 1gmj_A 23 GKREQAEEERYFRARAK 39 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhHHHHHHHHHH
Confidence 33444444444444433
No 57
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=26.84 E-value=2e+02 Score=23.19 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=40.4
Q ss_pred HHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCC
Q 027566 93 EVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (222)
Q Consensus 93 ~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~ 152 (222)
..+++.+++++|..+-++.-++..+++- .+...-.-.+...+|++|..+=+++-.+.|+
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P~~~~-a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSNQNGE-IGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcchh-HHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 3445669999999887777666655543 2333334567888899998887777666664
No 58
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=26.79 E-value=3.3e+02 Score=23.94 Aligned_cols=69 Identities=19% Similarity=0.132 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccch--------------HHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEP--------------IFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 84 cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dp--------------v~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
....+...=..+.+.++|++|...-++.-++...++ ...+...=.-.....+|++|...-++.-++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344555555566777999999988666655554443 122222222334556666666666555555
Q ss_pred CCC
Q 027566 150 APN 152 (222)
Q Consensus 150 ~p~ 152 (222)
.|+
T Consensus 347 ~p~ 349 (457)
T 1kt0_A 347 DSA 349 (457)
T ss_dssp STT
T ss_pred CCc
Confidence 544
No 59
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.76 E-value=3.7e+02 Score=24.51 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCCCCCcceee-ccCCeEEEE
Q 027566 121 FRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLLKCLSDA-TTLGIRVQV 170 (222)
Q Consensus 121 ~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~~~~~~s~a-~T~gIkV~V 170 (222)
..|+.++++ ++++-.+-.+.+.+.+-.| ||-+++.+-.- -.+++.|+.
T Consensus 74 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~i-pN~~~~~vp~g~e~~n~~~~~ 122 (421)
T 1ses_A 74 KALGEEAKR-LEEALREKEARLEALLLQV-PLPPWPGAPVGGEEANREIKR 122 (421)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHTTC-CCCCCTTSCSSSGGGCEEEEE
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCCCCCCCCCccccEEEEE
Confidence 344444442 3444444455555555555 55554443222 234555544
No 60
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar protein; 2.41A {Geobacillus stearothermophilus}
Probab=26.38 E-value=1.6e+02 Score=27.63 Aligned_cols=71 Identities=21% Similarity=0.311 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHH-----------------------HHHhhh--------hcc--cchHH--HHHHHH
Q 027566 83 QAYALLKQQMEVAAKTEDYKEAARI-----------------------RDSLRS--------FEE--EEPIF--RLRRLM 127 (222)
Q Consensus 83 ~cye~Lk~qL~~AIk~EdyE~AA~L-----------------------RDeI~~--------l~~--~Dpv~--~L~~~L 127 (222)
..+..++..|+.+|..++..+|..+ |+-|.+ ++. -.||. -.++++
T Consensus 101 ~kl~~~~~eL~~ai~~~dl~~a~~~YHklsyeikk~avll~RVYG~stRe~il~~fk~pA~~l~~~~~y~Itv~~~~~~~ 180 (412)
T 2ra1_A 101 TKLDKMRQELKAAVDAKDLKKAEELYHKISYELKTRTVILDRVYGQSTRELLRSTFKADAQALRDRLIYDITVAMKAREA 180 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhccHHHHHHHhhhhhHhhhhcEEEEecccChhHHHHHHHHhhchHHHHHHHhhhHHHHHHHHHHH
Confidence 5677888889999988777766554 333311 111 13332 567889
Q ss_pred HHHHHhhhHHHHHHHHHHhhhhCCCC
Q 027566 128 KEAVAEERFEDAARYRDKLKEIAPNS 153 (222)
Q Consensus 128 ~~AV~eErYE~AA~lRD~i~~L~p~~ 153 (222)
+.||+++++.+|-.+=|+..++-|+-
T Consensus 181 ~~a~~~g~l~~a~~~l~~v~~~l~kv 206 (412)
T 2ra1_A 181 QDAVKAGNLDKAKAALDQVNQYVSKV 206 (412)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHGGGC
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999888865443
No 61
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.26 E-value=1.5e+02 Score=19.96 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=34.8
Q ss_pred HHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCC
Q 027566 88 LKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (222)
Q Consensus 88 Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~ 152 (222)
+...=..+.+.++|++|...-++.-.+...++.. +...=......++|++|...-++.-++.|+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG-YSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 3344445566677777777766655554444422 111122234556677776666666556554
No 62
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=26.09 E-value=1.9e+02 Score=24.08 Aligned_cols=58 Identities=7% Similarity=0.031 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhc------cchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHH
Q 027566 85 YALLKQQMEVAAKT------EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARY 142 (222)
Q Consensus 85 ye~Lk~qL~~AIk~------EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~l 142 (222)
|..+|.+|+-+|.+ ++...+...|++|.+|=.+-.....+-..+.-|.++.+-+|-.+
T Consensus 9 ~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~Ei 72 (193)
T 3ggy_A 9 TIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEI 72 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444 77888888899999998887777777778888888876666554
No 63
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12}
Probab=26.06 E-value=1.3e+02 Score=26.28 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=25.5
Q ss_pred CCeEEEEEeEEecCcccCCCCceEEEEEEEEEeCCCCCeEE
Q 027566 164 LGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQL 204 (222)
Q Consensus 164 ~gIkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN~s~~tVQL 204 (222)
+|+.|+-.=.|-+ +.|.|.+.++|.|.+..++++
T Consensus 133 ~G~~v~k~ytf~~-------~~Y~i~v~~~v~N~s~~~~~~ 166 (330)
T 3blc_A 133 AGNTFTKTFVLKR-------GDYAVNVNYNVQNAGEKPLEI 166 (330)
T ss_dssp TSCEEEEEEEEET-------TCCEEEEEEEEECCSSSCEEE
T ss_pred CCeEEEEEEEEcC-------CceEEEEEEEEEcCCCCccee
Confidence 4665555444433 469999999999999988876
No 64
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=25.81 E-value=1.3e+02 Score=24.95 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 027566 121 FRLRRLMKEAVAEERFEDAARYRDKLK 147 (222)
Q Consensus 121 ~~L~~~L~~AV~eErYE~AA~lRD~i~ 147 (222)
..+..+|.+|+.+++|+.|+.+-.+++
T Consensus 165 ~~~~~~l~~~~~~~d~~~A~~~v~kL~ 191 (207)
T 3bvo_A 165 KEFTDNVSSAFEQDDFEEAKEILTKMR 191 (207)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677788888889999886544443
No 65
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=25.74 E-value=1.2e+02 Score=22.26 Aligned_cols=56 Identities=7% Similarity=0.099 Sum_probs=34.5
Q ss_pred HHHHHHHhccchHHHHHHHHHhhhhc---ccchHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 027566 90 QQMEVAAKTEDYKEAARIRDSLRSFE---EEEPIFRLRRLMKEAVAEERFEDAARYRDK 145 (222)
Q Consensus 90 ~qL~~AIk~EdyE~AA~LRDeI~~l~---~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~ 145 (222)
..|..++...+++...++-=.||..- +-..+..+..+|+.+....+.+.+..+-.+
T Consensus 45 ~~L~~a~~~~d~~~~~~~aH~LKGsa~~lG~~~l~~~~~~lE~~~~~~~~~~~~~~~~~ 103 (125)
T 2a0b_A 45 SVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEE 103 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCHhHHHHHHHH
Confidence 35666666678877665555555444 346667778888877766666554443333
No 66
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=25.64 E-value=2.9e+02 Score=23.00 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHhhhhcccch--------------HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCC
Q 027566 86 ALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEP--------------IFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (222)
Q Consensus 86 e~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dp--------------v~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p 151 (222)
..+...=..+.+.++|++|...-++.-.+...++ ...+...=.-.....+|++|..+-++.-++.|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344444445566999999988776666655553 22222233344566778888777777766665
Q ss_pred CC
Q 027566 152 NS 153 (222)
Q Consensus 152 ~~ 153 (222)
+.
T Consensus 228 ~~ 229 (336)
T 1p5q_A 228 NN 229 (336)
T ss_dssp TC
T ss_pred Cc
Confidence 53
No 67
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=25.12 E-value=1.2e+02 Score=23.93 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=17.9
Q ss_pred cCCeEEEEEeEEecCcccCCCCceEEEEEEEEEeCC
Q 027566 163 TLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNS 198 (222)
Q Consensus 163 T~gIkV~V~t~Ylpe~S~P~~~rYvFaY~ItIeN~s 198 (222)
+..+.|+|....+++ .+|+ |.|++.-..
T Consensus 16 ~~~~~~sI~~~~~~~------~~y~--Y~I~V~~~d 43 (156)
T 2v6v_A 16 ELLVKASVESFGLED------EKYW--FLVCCELSN 43 (156)
T ss_dssp CCEEEEEEEEEEEET------TEEE--EEEEEEETT
T ss_pred CcceEEEEeeEEEEC------CEEE--EEEEEEEcC
Confidence 345778887776652 3443 888888643
No 68
>2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2; solute-binding protein; 1.45A {Streptomyces clavuligerus} PDB: 2wok_A 2wop_A*
Probab=24.17 E-value=17 Score=33.33 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=10.6
Q ss_pred ccCCceeeEEEeecCCCCCC
Q 027566 45 KDLTRTYGIVACVGGGGGGS 64 (222)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~ 64 (222)
|-++|+.++.||++++++++
T Consensus 2 ~~~~~~~~l~aCg~~~~~~~ 21 (562)
T 2wol_A 2 TTAARRPAPTTAGAGWDAGV 21 (562)
T ss_dssp ------CGGGSCCSCTTTTS
T ss_pred CccccCccccccCCCCCCCc
Confidence 45678889999987765544
No 69
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=24.11 E-value=1.5e+02 Score=19.19 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=34.2
Q ss_pred HhccchHHHHHHHHHhhhhcccch------HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCC
Q 027566 96 AKTEDYKEAARIRDSLRSFEEEEP------IFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (222)
Q Consensus 96 Ik~EdyE~AA~LRDeI~~l~~~Dp------v~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~ 152 (222)
...++|++|...-.+.-.+...++ ...+...-......++|++|..+=.+.-.+.|+
T Consensus 49 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 49 FEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 345788888877665544433221 222333334456778888888877777666554
No 70
>2eje_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.85 E-value=94 Score=24.38 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=28.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHHHHhccchHHHHHH
Q 027566 71 LSSSARSFLSRSQAYALLKQQMEVAAKTEDYKEAARI 107 (222)
Q Consensus 71 ~~~~~~~~~gc~~cye~Lk~qL~~AIk~EdyE~AA~L 107 (222)
+.-+-..++...+.+..|++|.++++.. .|.+|.-+
T Consensus 5 ~~~~~~~~~s~~d~i~~LrkqVedLFn~-kYgkALG~ 40 (114)
T 2eje_A 5 SSGDDNERLSKVEKARQLREQVNDLFSR-KFGEAIGM 40 (114)
T ss_dssp CCCSSTTTCSHHHHHHHHHHHHHHHHHH-HHHHHTTC
T ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHH-HHHHHcCC
Confidence 3445667788889999999999998877 78877653
No 71
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=23.51 E-value=2.1e+02 Score=20.65 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCC
Q 027566 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNS 153 (222)
Q Consensus 84 cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~ 153 (222)
..+.+-..=..+.+.++|++|..+-+++-.+...++..-.. .=......++|++|...=++.-.+.|+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG-LGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHH-HHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 33444444445556688888887766665555555433211 1123345677777777776666666654
No 72
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=23.31 E-value=3e+02 Score=23.22 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=22.5
Q ss_pred CCCCCcccccChHHHHHHHHHHHHHHHhccchH
Q 027566 70 RLSSSARSFLSRSQAYALLKQQMEVAAKTEDYK 102 (222)
Q Consensus 70 ~~~~~~~~~~gc~~cye~Lk~qL~~AIk~EdyE 102 (222)
+.+.-...++.+.+.-....+.|...|...+..
T Consensus 81 ~~~yFae~RL~REq~Rsk~~E~L~eII~n~n~S 113 (197)
T 3tuf_A 81 DDDLFTTYRLDLEDARSKEREELNAIVSSDDAT 113 (197)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHTCTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 334455667777777778888888888886643
No 73
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.15 E-value=39 Score=26.90 Aligned_cols=41 Identities=7% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 107 IRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 107 LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
++.||+.| +|.+..++++|..|...++-+-.+++.+++..|
T Consensus 8 ~K~Eiq~L--~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l 48 (123)
T 2lf0_A 8 EKNEIKRL--SDRLDAIRHQQADLSLVEAADKYAELEKEKATL 48 (123)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
No 74
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=22.44 E-value=1.8e+02 Score=23.79 Aligned_cols=58 Identities=9% Similarity=0.146 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHhhhhcccchH-------HHHHHHHHHHH-HhhhHHHHHHHHH
Q 027566 87 LLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPI-------FRLRRLMKEAV-AEERFEDAARYRD 144 (222)
Q Consensus 87 ~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv-------~~L~~~L~~AV-~eErYE~AA~lRD 144 (222)
.|.++++.++..+-|+.|.-+-+-+..+..++|- .++.--+.+|. ++.+|-.|...=.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~ 87 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYT 87 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4889999999999999999999999888876553 24555555554 4445655554433
No 75
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.26 E-value=2.8e+02 Score=25.06 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCC
Q 027566 121 FRLRRLMKEAVAEERFEDAARYRDKLKEIAPNS 153 (222)
Q Consensus 121 ~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~ 153 (222)
..|+..|..|.+...|--||.+-.+|=+|.|.+
T Consensus 208 LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 208 NALQVAMSQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 489999999999999999999999998887754
No 76
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=22.09 E-value=1.8e+02 Score=21.25 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhh
Q 027566 121 FRLRRLMKEAVAEER 135 (222)
Q Consensus 121 ~~L~~~L~~AV~eEr 135 (222)
..|+++|..+|+.++
T Consensus 62 ~elkrqlAd~va~~k 76 (78)
T 2ic6_A 62 GELKRELADLIAAQK 76 (78)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhcc
Confidence 677777777777554
No 77
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=21.69 E-value=3e+02 Score=21.79 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=33.2
Q ss_pred chHHHHHHHHHhhhhcccchHHHHHHHHHHH---HHhhhHHHHHHHHHHhhhhCCCCC
Q 027566 100 DYKEAARIRDSLRSFEEEEPIFRLRRLMKEA---VAEERFEDAARYRDKLKEIAPNSL 154 (222)
Q Consensus 100 dyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~A---V~eErYE~AA~lRD~i~~L~p~~~ 154 (222)
++.++..+-.++ ++..+|..+-.-.+.-| ...++|++|-++-|.+=+++|+-+
T Consensus 50 ~~~~gI~lLe~l--l~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 50 DIRKGIVLLEEL--LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHH--HhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 666777766665 22222432222223333 467889999999999999988653
No 78
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=21.44 E-value=2.7e+02 Score=21.16 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=45.3
Q ss_pred HHHHHhccchHHHHHHHHHhhhhcccchH--HHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCCC
Q 027566 92 MEVAAKTEDYKEAARIRDSLRSFEEEEPI--FRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSL 154 (222)
Q Consensus 92 L~~AIk~EdyE~AA~LRDeI~~l~~~Dpv--~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~~ 154 (222)
-..+++.++|++|...-+++-......|. ..+-..-.......+|++|...=+++-++-|+..
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 34567789999999998887665544443 3344444566778899999988888777777654
No 79
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=21.34 E-value=61 Score=24.96 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=19.3
Q ss_pred EEEEEEEeCCCCCeEEeeceEEEEcCC
Q 027566 189 AYRVRITNNSERPVQLLRRHWIITDAN 215 (222)
Q Consensus 189 aY~ItIeN~s~~tVQLlsRhW~ItD~~ 215 (222)
+-++++.|.+|.|||.=| |+++...|
T Consensus 21 ~~~l~V~NtGDRPIQVGS-HyHF~E~N 46 (101)
T 4ep8_B 21 TCRVVVENHGDRPIQVGS-HYHFAEVN 46 (101)
T ss_dssp EEEEEEEECSSSCEEEET-TSCGGGSC
T ss_pred EEEEEEEeCCCcceEEcc-ccChhHcC
Confidence 568899999999999866 44444443
No 80
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=21.17 E-value=1.5e+02 Score=21.98 Aligned_cols=24 Identities=0% Similarity=-0.137 Sum_probs=13.0
Q ss_pred cccccChHHHHHHHHHHHHHHHhc
Q 027566 75 ARSFLSRSQAYALLKQQMEVAAKT 98 (222)
Q Consensus 75 ~~~~~gc~~cye~Lk~qL~~AIk~ 98 (222)
...+..-....+.|=.+++.++..
T Consensus 13 ~re~iEarN~aEsliy~~e~~L~e 36 (120)
T 2p32_A 13 GLVPRGSHMGLESYAFNLKQTIED 36 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444455555555666666644
No 81
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=20.84 E-value=3.2e+02 Score=21.68 Aligned_cols=68 Identities=19% Similarity=0.115 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHH----HHHHHHHH-HHhhhHHHHHHHHHHhhhh
Q 027566 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFR----LRRLMKEA-VAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 82 ~~cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~----L~~~L~~A-V~eErYE~AA~lRD~i~~L 149 (222)
...+..|..++..++..++|++|..+-+++.......|... .-..|... ....+|++|..+=.+.-.+
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~ 144 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ 144 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 35677888889999999999999999888876655555432 12223222 2334788887755555444
No 82
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=20.80 E-value=2e+02 Score=24.64 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCCCCCc
Q 027566 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLLKC 157 (222)
Q Consensus 99 EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~~~~~ 157 (222)
+-|+.|.++.++|..-...-.-...+.++..+|+ .|++|+++-+.+.-+-||..+.-
T Consensus 35 ~lF~~a~~~~~~le~~~~~~~S~~~Q~~v~~~i~--~le~~~~~v~~l~LFS~NE~leD 91 (243)
T 3qc1_A 35 ELFETSKKLLEDVEVATEPTGSRTIQDKVSKGLE--LLEKAAGMLSQLDLFSRNEDLEE 91 (243)
T ss_dssp HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHH--HHHHHHHHHHHHTTTCSSSCSTT
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHhcccCCCCcccc
Confidence 6688888888888553211011368899999998 99999999999988877775443
No 83
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=20.79 E-value=1.8e+02 Score=22.17 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhh
Q 027566 120 IFRLRRLMKEAVAEER 135 (222)
Q Consensus 120 v~~L~~~L~~AV~eEr 135 (222)
+..|+++|..+|+.++
T Consensus 61 i~elkr~lAd~v~~~k 76 (96)
T 2ic9_A 61 LGELKRELADLIAAQK 76 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc
Confidence 3788888888888655
No 84
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=20.64 E-value=1.9e+02 Score=19.12 Aligned_cols=58 Identities=17% Similarity=0.062 Sum_probs=37.0
Q ss_pred HhccchHHHHHHHHHhhhhcccch--HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhCCCC
Q 027566 96 AKTEDYKEAARIRDSLRSFEEEEP--IFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNS 153 (222)
Q Consensus 96 Ik~EdyE~AA~LRDeI~~l~~~Dp--v~~L~~~L~~AV~eErYE~AA~lRD~i~~L~p~~ 153 (222)
.+.++|++|...-+++-.+..+++ ...+-..=.......+|++|..+=.++-.+-|+.
T Consensus 50 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 50 YATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 456899999988777655554442 1222222334456788999988777776666654
No 85
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=20.45 E-value=1.3e+02 Score=25.39 Aligned_cols=29 Identities=17% Similarity=0.032 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 121 FRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 121 ~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
..+-++|.-.|++.+||+|..+=++++++
T Consensus 19 ~~~~deLDv~IA~r~feeAv~lle~~~~~ 47 (235)
T 2d2s_A 19 DEGVEEIDIELARLRFESAVETLLDIESQ 47 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 77889999999999999999998888875
No 86
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.30 E-value=1.6e+02 Score=23.00 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHHHHHHhc---cchHHHHHH-HHHhhhhc
Q 027566 80 SRSQAYALLKQQMEVAAKT---EDYKEAARI-RDSLRSFE 115 (222)
Q Consensus 80 gc~~cye~Lk~qL~~AIk~---EdyE~AA~L-RDeI~~l~ 115 (222)
--+.+|+.=-.-|..+++- ++-+.|..+ ++-|.+|.
T Consensus 14 ~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe 53 (116)
T 2dl1_A 14 IIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLL 53 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 3556777777777777766 455566655 66664443
No 87
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=20.05 E-value=3.1e+02 Score=23.62 Aligned_cols=64 Identities=16% Similarity=0.058 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Q 027566 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (222)
Q Consensus 84 cye~Lk~qL~~AIk~EdyE~AA~LRDeI~~l~~~Dpv~~L~~~L~~AV~eErYE~AA~lRD~i~~L 149 (222)
....+...+..+++.+++++|..+-+++..+..+ + ..+-..........+|++|..+-+++-.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 146 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-P-NDAFWLAQVYCCTGDYARAKCLLTKEDLY 146 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-H-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-c-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc
Confidence 3456777788888889999999987777555443 2 33345667777788888888877766544
Done!