BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027567
         (222 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q90WR8|SP3_CHICK Transcription factor Sp3 OS=Gallus gallus GN=SP3 PE=1 SV=1
          Length = 771

 Score = 35.8 bits (81), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 116 WEFCPGDFADNDGKYIRKTKKEFDATFLCPKCKSGRTESD-------THVGRKGMHVAII 168
           W FC   F  +D     +     +  F+CP+C      SD       TH  +KG+H +  
Sbjct: 645 WMFCGKRFTRSDELQRHRRTHTGEKKFVCPECSKRFMRSDHLAKHIKTHQNKKGIHSSST 704

Query: 169 VLISLLAS 176
           VL S+ A+
Sbjct: 705 VLASVEAT 712


>sp|Q02447|SP3_HUMAN Transcription factor Sp3 OS=Homo sapiens GN=SP3 PE=1 SV=3
          Length = 781

 Score = 34.7 bits (78), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 116 WEFCPGDFADNDGKYIRKTKKEFDATFLCPKCKSGRTESD-------THVGRKGMHVAII 168
           W +C   F  +D     +     +  F+CP+C      SD       TH  +KG+H +  
Sbjct: 655 WMYCGKRFTRSDELQRHRRTHTGEKKFVCPECSKRFMRSDHLAKHIKTHQNKKGIHSSST 714

Query: 169 VLISLLAS 176
           VL S+ A+
Sbjct: 715 VLASVEAA 722


>sp|O70494|SP3_MOUSE Transcription factor Sp3 OS=Mus musculus GN=Sp3 PE=1 SV=2
          Length = 783

 Score = 32.0 bits (71), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 116 WEFCPGDFADNDGKYIRKTKKEFDATFLCPKCKSGRTESD-------THVGRKGMHVAII 168
           W FC   F  +D     +     +  F+CP+C      SD       TH  +K +H +  
Sbjct: 657 WMFCGKRFTRSDELQRHRRTHTGEKKFVCPECSKRFMRSDHLAKHIKTHQNKKVIHSSST 716

Query: 169 VLISLLASIVTAIV 182
           VL S+ A    A++
Sbjct: 717 VLASVEAGRDDALI 730


>sp|P46321|LICR_BACSU Probable licABCH operon regulator OS=Bacillus subtilis (strain 168)
           GN=licR PE=1 SV=1
          Length = 641

 Score = 30.8 bits (68), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 66  ILPDVKEKNTTY-----VFKGEE--SWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEF 118
           IL D KEK   Y     VF  E+  S + + +FLG K   CG  +E+    D +F+  + 
Sbjct: 489 ILSDEKEKANRYLKKELVFFQEDLRSKEEVIQFLGQKVVECGFADEEII--DSIFEREDM 546

Query: 119 CPGDFAD 125
            P  F +
Sbjct: 547 SPTCFGN 553


>sp|Q9DC11|PXDC2_MOUSE Plexin domain-containing protein 2 OS=Mus musculus GN=Plxdc2 PE=1
           SV=1
          Length = 530

 Score = 30.8 bits (68), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 149 SGRTESDTHVGRKG--MHVAIIVLISLLASIVTAIVLVAAYKY 189
           SG +  D+   +KG  +H  +IV I +L  I+ A +LV  Y Y
Sbjct: 437 SGASTDDSAAEKKGGTLHAGLIVGILILVLIIAAAILVTVYMY 479


>sp|Q8C8N3|VWC2_MOUSE Brorin OS=Mus musculus GN=Vwc2 PE=1 SV=1
          Length = 324

 Score = 30.4 bits (67), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 53  PTVYFKC-QGENKKILPDVKEKNTTYVFKGEESWQPLTEFLGTKCKRC 99
           P ++ +C   +N +  P  KEK     F+G+ ++Q L EF+ + C+RC
Sbjct: 192 PRLHPRCIHVDNSQCCPQCKEKKNYCEFRGK-TYQTLEEFVVSPCERC 238


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,464,767
Number of Sequences: 539616
Number of extensions: 3662999
Number of successful extensions: 8527
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 8521
Number of HSP's gapped (non-prelim): 28
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)