Query 027567
Match_columns 222
No_of_seqs 33 out of 35
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 11:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08114 PMP1_2: ATPase proteo 95.9 0.011 2.5E-07 41.3 3.7 30 167-199 13-42 (43)
2 PF08693 SKG6: Transmembrane a 92.2 0.05 1.1E-06 37.3 0.4 34 159-194 7-40 (40)
3 PF01102 Glycophorin_A: Glycop 91.6 0.16 3.4E-06 41.4 2.7 41 166-209 66-106 (122)
4 COG4736 CcoQ Cbb3-type cytochr 90.9 0.32 6.9E-06 35.8 3.5 31 186-217 27-57 (60)
5 PF04689 S1FA: DNA binding pro 90.9 0.28 6E-06 37.3 3.2 34 159-192 6-40 (69)
6 PF14283 DUF4366: Domain of un 90.5 0.029 6.4E-07 49.1 -2.6 10 124-133 79-88 (218)
7 COG2976 Uncharacterized protei 90.0 0.44 9.6E-06 42.4 4.2 24 176-199 28-51 (207)
8 PF06679 DUF1180: Protein of u 88.9 0.35 7.6E-06 41.1 2.7 15 183-197 110-124 (163)
9 PF02009 Rifin_STEVOR: Rifin/s 88.3 1 2.2E-05 41.3 5.5 41 168-208 257-299 (299)
10 PF00558 Vpu: Vpu protein; In 87.5 0.83 1.8E-05 35.4 3.7 21 185-205 25-45 (81)
11 PF10883 DUF2681: Protein of u 86.2 2.2 4.7E-05 33.4 5.4 21 183-203 16-36 (87)
12 PF11669 WBP-1: WW domain-bind 85.3 1.4 3E-05 34.5 4.0 24 179-202 32-55 (102)
13 PF06864 PAP_PilO: Pilin acces 84.6 3 6.6E-05 38.6 6.6 30 168-199 166-195 (414)
14 PHA03265 envelope glycoprotein 84.6 1.1 2.5E-05 43.1 3.8 43 155-200 340-382 (402)
15 PF06365 CD34_antigen: CD34/Po 84.4 1.3 2.8E-05 39.0 3.8 39 163-202 99-137 (202)
16 PTZ00046 rifin; Provisional 84.0 1.8 3.8E-05 41.2 4.8 41 168-208 316-358 (358)
17 PF12191 stn_TNFRSF12A: Tumour 83.3 0.37 8E-06 40.3 0.0 50 141-199 61-110 (129)
18 PF02699 YajC: Preprotein tran 82.8 2.1 4.5E-05 32.0 3.9 26 186-211 17-42 (82)
19 TIGR01477 RIFIN variant surfac 82.7 2.2 4.7E-05 40.6 4.9 42 167-208 310-353 (353)
20 KOG3653 Transforming growth fa 82.7 3.7 7.9E-05 41.0 6.6 25 84-108 72-96 (534)
21 PRK05346 Na(+)-translocating N 82.3 3.5 7.7E-05 37.0 5.8 50 158-207 5-54 (256)
22 PF02404 SCF: Stem cell factor 81.4 0.47 1E-05 43.8 0.0 30 168-200 218-247 (273)
23 PF01299 Lamp: Lysosome-associ 80.8 0.96 2.1E-05 40.1 1.7 32 164-196 270-301 (306)
24 KOG1025 Epidermal growth facto 80.4 3.1 6.7E-05 44.5 5.4 41 166-206 630-671 (1177)
25 PF06305 DUF1049: Protein of u 79.3 7.7 0.00017 26.7 5.6 38 163-201 18-55 (68)
26 PF14981 FAM165: FAM165 family 79.0 6.6 0.00014 28.5 5.2 22 181-202 21-42 (51)
27 TIGR01938 nqrC NADH:ubiquinone 76.5 4.6 0.0001 36.3 4.7 49 159-207 2-50 (251)
28 PF15102 TMEM154: TMEM154 prot 75.5 1.2 2.6E-05 37.8 0.7 7 119-125 23-29 (146)
29 COG2165 PulG Type II secretory 75.3 4.7 0.0001 29.5 3.8 8 168-175 19-26 (149)
30 TIGR03141 cytochro_ccmD heme e 75.1 12 0.00026 25.3 5.4 28 176-203 14-41 (45)
31 PF12669 P12: Virus attachment 73.7 4.3 9.4E-05 29.1 3.1 10 186-195 17-26 (58)
32 PF08374 Protocadherin: Protoc 72.6 4.1 8.9E-05 36.8 3.4 35 156-191 30-64 (221)
33 COG2869 NqrC Na+-transporting 71.6 4.3 9.3E-05 37.5 3.3 44 157-201 6-49 (264)
34 PF02480 Herpes_gE: Alphaherpe 70.7 1.4 3E-05 42.1 0.0 10 54-63 236-245 (439)
35 TIGR00739 yajC preprotein tran 70.0 12 0.00026 28.3 5.0 22 191-212 23-44 (84)
36 PF10883 DUF2681: Protein of u 69.7 14 0.0003 28.9 5.3 26 170-195 6-31 (87)
37 PF14316 DUF4381: Domain of un 68.6 14 0.00031 29.5 5.4 14 180-193 35-48 (146)
38 PRK08455 fliL flagellar basal 67.9 4.6 9.9E-05 34.4 2.5 22 165-187 18-39 (182)
39 PF11368 DUF3169: Protein of u 67.4 8.2 0.00018 33.3 4.0 10 207-216 82-91 (248)
40 PRK05886 yajC preprotein trans 67.2 13 0.00028 30.0 4.8 22 191-212 24-45 (109)
41 TIGR03830 CxxCG_CxxCG_HTH puta 67.1 3.1 6.8E-05 31.2 1.3 27 72-101 13-39 (127)
42 PF05795 Plasmodium_Vir: Plasm 66.1 3.5 7.6E-05 35.1 1.5 37 171-207 286-324 (354)
43 PF02060 ISK_Channel: Slow vol 66.1 8.2 0.00018 32.4 3.6 15 190-204 87-101 (129)
44 PRK10414 biopolymer transport 65.8 12 0.00026 33.2 4.9 46 168-214 25-70 (244)
45 PRK06531 yajC preprotein trans 65.4 9.7 0.00021 30.8 3.9 24 189-212 20-43 (113)
46 PF12301 CD99L2: CD99 antigen 63.1 12 0.00026 32.1 4.2 26 167-194 117-142 (169)
47 PRK10506 hypothetical protein; 63.1 22 0.00048 29.0 5.6 26 181-206 28-53 (162)
48 PRK05978 hypothetical protein; 62.4 11 0.00023 31.9 3.7 17 84-100 24-40 (148)
49 PF12768 Rax2: Cortical protei 61.9 8.6 0.00019 34.8 3.3 17 73-90 114-130 (281)
50 PF02430 AMA-1: Apical membran 61.6 2.6 5.7E-05 41.4 0.0 29 167-195 431-460 (471)
51 PF11431 Transport_MerF: Membr 60.9 9.3 0.0002 27.2 2.6 13 184-196 34-46 (46)
52 PF05545 FixQ: Cbb3-type cytoc 60.9 12 0.00027 25.2 3.2 20 184-203 25-44 (49)
53 PF01108 Tissue_fac: Tissue fa 60.9 15 0.00033 27.4 4.0 55 26-96 19-79 (107)
54 TIGR02797 exbB tonB-system ene 60.1 18 0.00039 30.9 4.8 31 184-214 30-60 (211)
55 PF04995 CcmD: Heme exporter p 60.1 38 0.00083 22.8 5.4 28 174-201 11-38 (46)
56 PF06697 DUF1191: Protein of u 59.8 26 0.00057 32.4 6.0 31 170-200 220-250 (278)
57 COG2165 PulG Type II secretory 59.0 28 0.0006 25.4 5.0 9 186-194 32-40 (149)
58 PHA03099 epidermal growth fact 57.3 5.7 0.00012 33.8 1.3 35 164-198 100-134 (139)
59 PF14316 DUF4381: Domain of un 57.3 22 0.00048 28.4 4.6 34 173-206 25-58 (146)
60 PF07010 Endomucin: Endomucin; 56.0 11 0.00024 34.8 2.9 28 166-193 190-217 (259)
61 TIGR03831 YgiT_finger YgiT-typ 55.2 5.8 0.00013 25.1 0.8 27 73-101 14-40 (46)
62 PF09835 DUF2062: Uncharacteri 54.5 22 0.00048 28.2 4.1 21 181-201 134-154 (154)
63 PF02937 COX6C: Cytochrome c o 54.5 26 0.00057 26.4 4.3 37 178-214 26-62 (73)
64 PRK00888 ftsB cell division pr 54.4 22 0.00047 27.9 4.0 7 184-190 14-20 (105)
65 PRK10801 colicin uptake protei 53.7 26 0.00056 30.6 4.8 26 184-209 31-56 (227)
66 PF03302 VSP: Giardia variant- 53.4 11 0.00025 35.2 2.7 31 158-190 359-389 (397)
67 PF02439 Adeno_E3_CR2: Adenovi 52.6 16 0.00035 25.1 2.7 28 167-194 6-33 (38)
68 PRK01844 hypothetical protein; 51.0 25 0.00055 27.0 3.8 26 167-192 5-31 (72)
69 PHA02088 hypothetical protein 50.7 20 0.00044 29.8 3.4 22 179-200 14-36 (125)
70 PRK01658 holin-like protein; V 50.7 18 0.0004 29.1 3.1 24 167-190 89-112 (122)
71 PF15330 SIT: SHP2-interacting 50.3 27 0.00058 27.8 4.0 22 181-202 13-34 (107)
72 PF15102 TMEM154: TMEM154 prot 49.8 4.1 8.9E-05 34.6 -0.7 22 165-186 58-79 (146)
73 PRK05585 yajC preprotein trans 49.7 38 0.00082 26.8 4.7 21 192-212 39-59 (106)
74 PF13908 Shisa: Wnt and FGF in 49.5 8.5 0.00018 31.5 1.1 9 139-147 25-33 (179)
75 PF08320 PIG-X: PIG-X / PBN1; 49.2 55 0.0012 27.7 5.9 14 52-65 119-132 (207)
76 KOG2792 Putative cytochrome C 48.7 30 0.00065 32.4 4.5 32 170-201 74-106 (280)
77 PRK07021 fliL flagellar basal 47.6 33 0.0007 28.1 4.2 10 184-193 33-42 (162)
78 PF01034 Syndecan: Syndecan do 47.6 5.6 0.00012 29.9 -0.2 8 189-196 33-40 (64)
79 PF12259 DUF3609: Protein of u 47.3 15 0.00033 34.4 2.5 19 128-146 194-212 (361)
80 PF14163 SieB: Superinfection 47.0 41 0.00089 26.9 4.6 11 190-200 63-73 (151)
81 PF03606 DcuC: C4-dicarboxylat 46.9 29 0.00062 32.9 4.2 36 178-213 207-245 (465)
82 PTZ00473 Plasmodium Vir superf 46.8 34 0.00074 33.6 4.8 52 133-189 229-289 (420)
83 KOG3607 Meltrins, fertilins an 46.5 20 0.00043 36.7 3.3 81 115-196 624-706 (716)
84 PF09835 DUF2062: Uncharacteri 46.4 40 0.00086 26.8 4.4 30 168-197 124-153 (154)
85 PRK10920 putative uroporphyrin 46.4 59 0.0013 31.1 6.2 17 185-201 52-68 (390)
86 PRK07718 fliL flagellar basal 46.2 13 0.00028 30.0 1.7 22 178-199 15-36 (142)
87 PF03896 TRAP_alpha: Transloco 45.2 23 0.00049 32.5 3.2 30 169-198 208-237 (285)
88 PF06809 NPDC1: Neural prolife 45.2 7.6 0.00016 37.0 0.2 29 164-192 199-227 (341)
89 PF06827 zf-FPG_IleRS: Zinc fi 44.9 8.7 0.00019 23.5 0.4 13 93-105 1-13 (30)
90 PF12273 RCR: Chitin synthesis 44.7 29 0.00062 27.3 3.3 7 189-195 23-29 (130)
91 PF07213 DAP10: DAP10 membrane 44.6 11 0.00023 29.4 0.9 30 168-198 39-68 (79)
92 PF13179 DUF4006: Family of un 44.5 36 0.00078 25.8 3.6 39 166-204 9-47 (66)
93 PF09788 Tmemb_55A: Transmembr 44.3 23 0.0005 32.6 3.1 13 139-151 175-187 (256)
94 PF00558 Vpu: Vpu protein; In 44.1 29 0.00063 27.0 3.2 29 180-208 17-45 (81)
95 TIGR00100 hypA hydrogenase nic 43.5 12 0.00026 29.5 1.1 10 142-151 87-96 (115)
96 PF13400 Tad: Putative Flp pil 43.0 88 0.0019 20.7 5.0 15 186-200 23-37 (48)
97 PF02687 FtsX: FtsX-like perme 42.4 60 0.0013 22.8 4.4 15 181-195 13-27 (121)
98 PF05434 Tmemb_9: TMEM9; Inte 41.7 25 0.00054 30.1 2.7 15 90-104 13-27 (149)
99 COG4640 Predicted membrane pro 41.7 17 0.00038 35.8 2.0 12 139-151 14-25 (465)
100 PRK15117 ABC transporter perip 41.7 20 0.00043 30.8 2.2 26 182-208 74-99 (211)
101 PLN00113 leucine-rich repeat r 41.6 45 0.00098 32.9 4.8 8 186-193 648-655 (968)
102 KOG1094 Discoidin domain recep 40.9 52 0.0011 34.5 5.3 29 163-193 390-418 (807)
103 PRK10381 LPS O-antigen length 40.6 51 0.0011 30.9 4.8 29 166-195 339-367 (377)
104 PF11337 DUF3139: Protein of u 40.3 84 0.0018 23.2 5.1 22 183-204 18-45 (85)
105 PTZ00045 apical membrane antig 40.3 43 0.00092 34.2 4.5 40 167-206 516-555 (595)
106 PF07047 OPA3: Optic atrophy 3 39.7 45 0.00097 26.9 3.8 33 182-214 89-126 (134)
107 PF14584 DUF4446: Protein of u 39.6 80 0.0017 26.4 5.4 20 196-216 29-48 (151)
108 PF12158 DUF3592: Protein of u 39.5 61 0.0013 24.4 4.3 14 180-193 17-30 (148)
109 PF11346 DUF3149: Protein of u 39.4 28 0.0006 24.1 2.2 14 181-194 25-38 (42)
110 PF04478 Mid2: Mid2 like cell 39.2 6.5 0.00014 33.8 -1.1 10 186-195 70-79 (154)
111 PF09716 ETRAMP: Malarial earl 39.1 22 0.00048 26.9 1.9 15 180-194 68-82 (84)
112 PF04882 Peroxin-3: Peroxin-3; 39.0 17 0.00038 34.3 1.6 20 179-198 21-40 (432)
113 PF11014 DUF2852: Protein of u 38.4 43 0.00094 27.6 3.5 13 183-195 28-40 (115)
114 PF06143 Baculo_11_kDa: Baculo 38.3 95 0.0021 24.4 5.2 11 194-204 69-79 (84)
115 PRK10847 hypothetical protein; 37.9 40 0.00088 28.7 3.5 15 186-200 204-218 (219)
116 PRK00523 hypothetical protein; 37.9 54 0.0012 25.2 3.8 9 167-175 6-14 (72)
117 TIGR01708 typeII_sec_gspH gene 37.8 76 0.0016 24.6 4.7 19 186-204 28-47 (143)
118 PF15345 TMEM51: Transmembrane 37.7 40 0.00086 30.8 3.5 14 187-200 78-91 (233)
119 COG3478 Predicted nucleic-acid 37.6 14 0.00029 28.3 0.5 26 89-114 36-64 (68)
120 COG3114 CcmD Heme exporter pro 37.6 1E+02 0.0022 23.7 5.1 24 171-194 20-43 (67)
121 PRK12785 fliL flagellar basal 37.6 5.1 0.00011 33.3 -2.0 14 181-194 38-51 (166)
122 PRK00564 hypA hydrogenase nick 37.4 19 0.00042 28.4 1.4 8 93-100 71-78 (117)
123 PF14610 DUF4448: Protein of u 36.8 18 0.0004 30.0 1.2 10 186-195 177-186 (189)
124 PF04375 HemX: HemX; InterPro 36.7 1.1E+02 0.0023 28.5 6.2 17 186-202 46-62 (372)
125 TIGR02796 tolQ TolQ protein. T 36.5 95 0.0021 26.7 5.5 27 184-210 30-56 (215)
126 PF11780 DUF3318: Protein of u 36.1 32 0.0007 28.7 2.5 20 178-197 109-128 (146)
127 COG5353 Uncharacterized protei 36.0 47 0.001 29.0 3.5 29 163-194 4-32 (161)
128 PF13878 zf-C2H2_3: zinc-finge 35.9 16 0.00035 24.4 0.6 11 91-101 11-21 (41)
129 COG0675 Transposase and inacti 35.8 23 0.0005 29.3 1.6 13 139-151 320-332 (364)
130 PF09402 MSC: Man1-Src1p-C-ter 35.4 8.2 0.00018 34.0 -1.1 18 64-81 67-84 (334)
131 PRK15471 chain length determin 35.2 68 0.0015 29.6 4.7 28 166-193 295-322 (325)
132 PLN03150 hypothetical protein; 34.7 34 0.00074 33.4 2.8 12 184-195 562-573 (623)
133 PRK11387 S-methylmethionine tr 34.7 35 0.00077 31.3 2.8 22 180-201 445-467 (471)
134 PF02009 Rifin_STEVOR: Rifin/s 34.6 65 0.0014 29.8 4.4 37 168-204 262-298 (299)
135 cd00927 Cyt_c_Oxidase_VIc Cyto 34.4 92 0.002 23.7 4.5 33 182-214 28-60 (70)
136 PF09577 Spore_YpjB: Sporulati 34.3 73 0.0016 28.6 4.6 29 171-200 201-229 (232)
137 COG1545 Predicted nucleic-acid 34.1 14 0.00031 30.0 0.2 29 89-126 25-53 (140)
138 PRK00390 leuS leucyl-tRNA synt 33.5 41 0.00089 34.3 3.2 34 80-116 459-493 (805)
139 PF14952 zf-tcix: Putative tre 33.2 17 0.00037 25.7 0.4 35 89-127 7-41 (44)
140 PF12868 DUF3824: Domain of un 32.8 70 0.0015 26.7 4.0 13 184-196 21-33 (137)
141 PRK04125 murein hydrolase regu 32.8 58 0.0013 27.2 3.5 20 167-186 92-111 (141)
142 PRK10747 putative protoheme IX 32.8 68 0.0015 29.0 4.2 9 188-196 73-81 (398)
143 cd01818 TIAM1_RBD Ubiquitin do 32.8 15 0.00032 28.6 -0.0 13 109-121 65-77 (77)
144 PF09855 DUF2082: Nucleic-acid 32.8 34 0.00075 25.2 2.0 44 66-114 12-60 (64)
145 PRK01908 electron transport co 32.6 96 0.0021 26.8 4.9 18 192-209 32-49 (205)
146 PRK08808 general secretion pat 32.5 1.1E+02 0.0024 26.8 5.3 13 188-200 34-46 (211)
147 PRK11273 glpT sn-glycerol-3-ph 32.5 47 0.001 29.6 3.1 15 183-197 430-444 (452)
148 COG1380 Putative effector of m 32.3 88 0.0019 25.9 4.4 33 167-199 90-122 (128)
149 cd01324 cbb3_Oxidase_CcoQ Cyto 32.0 55 0.0012 22.7 2.8 18 183-200 25-42 (48)
150 PF07092 DUF1356: Protein of u 31.7 15 0.00033 33.2 -0.0 40 141-180 38-93 (238)
151 PF11884 DUF3404: Domain of un 31.5 55 0.0012 30.2 3.4 9 127-135 182-190 (262)
152 PF07754 DUF1610: Domain of un 31.4 25 0.00054 21.9 0.9 12 137-148 12-23 (24)
153 PRK11059 regulatory protein Cs 31.4 57 0.0012 31.3 3.7 40 164-204 11-50 (640)
154 PF09716 ETRAMP: Malarial earl 31.4 68 0.0015 24.3 3.4 33 161-193 52-84 (84)
155 PF10855 DUF2648: Protein of u 30.8 36 0.00078 23.0 1.6 19 178-196 9-27 (33)
156 PF05454 DAG1: Dystroglycan (D 30.6 17 0.00036 33.6 0.0 9 197-205 181-189 (290)
157 KOG2533 Permease of the major 30.3 1E+02 0.0022 29.9 5.2 25 178-202 448-472 (495)
158 PF07172 GRP: Glycine rich pro 30.3 28 0.0006 27.2 1.2 19 166-184 5-23 (95)
159 TIGR02976 phageshock_pspB phag 30.3 98 0.0021 23.5 4.1 32 181-212 17-54 (75)
160 PF10892 DUF2688: Protein of u 30.1 17 0.00037 27.2 -0.0 12 90-101 7-18 (60)
161 PF05283 MGC-24: Multi-glycosy 29.9 63 0.0014 28.3 3.4 33 114-146 75-108 (186)
162 COG1862 YajC Preprotein transl 29.7 1.1E+02 0.0025 24.1 4.5 25 186-210 23-48 (97)
163 TIGR02605 CxxC_CxxC_SSSS putat 29.5 31 0.00067 22.9 1.2 11 95-105 7-18 (52)
164 PF14851 FAM176: FAM176 family 29.4 20 0.00044 30.5 0.3 32 164-195 21-52 (153)
165 TIGR03481 HpnM hopanoid biosyn 29.4 43 0.00092 28.5 2.2 25 183-208 71-95 (198)
166 PF06212 GRIM-19: GRIM-19 prot 29.3 1.2E+02 0.0026 25.0 4.8 13 181-193 41-53 (130)
167 PRK12380 hydrogenase nickel in 29.3 26 0.00057 27.5 0.9 10 142-151 87-96 (113)
168 PF13451 zf-trcl: Probable zin 29.2 4.2 9.1E-05 28.9 -3.2 32 119-150 10-42 (49)
169 PLN02563 aminoacyl-tRNA ligase 29.2 51 0.0011 34.8 3.2 37 76-116 547-586 (963)
170 KOG3839 Lectin VIP36, involved 29.1 11 0.00025 36.0 -1.3 24 178-202 327-350 (351)
171 PHA00689 hypothetical protein 29.1 18 0.0004 26.8 0.0 24 92-118 16-39 (62)
172 PF13268 DUF4059: Protein of u 29.0 1.4E+02 0.003 23.1 4.7 32 172-203 12-48 (72)
173 PF13584 BatD: Oxygen toleranc 29.0 73 0.0016 29.5 3.8 20 123-142 362-381 (484)
174 PF04995 CcmD: Heme exporter p 28.3 1.9E+02 0.0041 19.4 4.9 30 171-200 13-42 (46)
175 TIGR01495 ETRAMP Plasmodium ri 27.7 49 0.0011 25.6 2.1 11 186-196 72-82 (85)
176 PRK10574 putative major pilin 27.6 1.8E+02 0.0039 24.1 5.5 14 185-198 28-41 (146)
177 PF11084 DUF2621: Protein of u 27.6 72 0.0016 27.4 3.2 28 167-194 9-36 (141)
178 PF15288 zf-CCHC_6: Zinc knuck 27.5 24 0.00051 24.4 0.3 11 94-104 2-12 (40)
179 COG2260 Predicted Zn-ribbon RN 27.5 23 0.00049 26.4 0.3 10 94-103 6-15 (59)
180 PF11240 DUF3042: Protein of u 27.5 1.3E+02 0.0028 22.0 4.1 33 169-201 8-40 (54)
181 PF06667 PspB: Phage shock pro 27.3 1.3E+02 0.0028 23.0 4.3 28 186-213 22-55 (75)
182 PF10721 DUF2514: Protein of u 27.2 63 0.0014 27.2 2.9 21 180-200 20-40 (162)
183 PF05056 DUF674: Protein of un 27.0 46 0.001 32.6 2.3 55 84-146 127-181 (467)
184 PF06024 DUF912: Nucleopolyhed 26.8 70 0.0015 24.8 2.8 12 164-175 62-73 (101)
185 PRK09521 exosome complex RNA-b 26.7 65 0.0014 26.8 2.8 36 73-109 145-182 (189)
186 PF09682 Holin_LLH: Phage holi 26.7 2.1E+02 0.0046 22.1 5.5 18 188-205 29-47 (108)
187 COG4649 Uncharacterized protei 26.3 22 0.00047 32.2 -0.0 28 169-196 29-56 (221)
188 PF12729 4HB_MCP_1: Four helix 26.1 1.6E+02 0.0034 21.6 4.5 13 178-190 19-31 (181)
189 PRK03681 hypA hydrogenase nick 26.0 35 0.00077 26.9 1.1 10 142-151 88-97 (114)
190 KOG4550 Predicted membrane pro 26.0 46 0.001 33.7 2.1 14 181-194 575-588 (606)
191 TIGR02736 cbb3_Q_epsi cytochro 25.9 77 0.0017 23.5 2.7 33 183-216 12-49 (56)
192 PF12768 Rax2: Cortical protei 25.6 64 0.0014 29.3 2.8 14 160-173 221-234 (281)
193 smart00834 CxxC_CXXC_SSSS Puta 25.5 35 0.00077 21.2 0.8 7 95-101 7-13 (41)
194 PHA03240 envelope glycoprotein 25.5 71 0.0015 29.6 3.0 38 157-194 205-242 (258)
195 PF04135 Nop10p: Nucleolar RNA 25.4 21 0.00046 25.7 -0.2 8 95-102 7-14 (53)
196 PHA02047 phage lambda Rz1-like 25.4 1.4E+02 0.0031 24.4 4.4 7 183-190 21-28 (101)
197 PF14654 Epiglycanin_C: Mucin, 25.4 1.6E+02 0.0034 24.3 4.7 40 154-193 5-44 (106)
198 PF02480 Herpes_gE: Alphaherpe 25.3 24 0.00051 34.0 0.0 13 184-196 374-386 (439)
199 cd00350 rubredoxin_like Rubred 25.2 43 0.00093 21.1 1.2 11 140-150 16-26 (33)
200 PF04923 Ninjurin: Ninjurin ; 25.1 1.4E+02 0.003 23.7 4.3 35 168-202 45-79 (104)
201 PF04060 FeS: Putative Fe-S cl 25.0 27 0.00059 22.7 0.3 12 91-102 2-13 (35)
202 PF06864 PAP_PilO: Pilin acces 24.8 88 0.0019 29.1 3.6 39 163-203 164-202 (414)
203 PF15176 LRR19-TM: Leucine-ric 24.5 98 0.0021 25.3 3.4 17 186-202 39-55 (102)
204 PF06024 DUF912: Nucleopolyhed 24.4 56 0.0012 25.3 1.9 27 161-187 56-82 (101)
205 PF14575 EphA2_TM: Ephrin type 24.3 34 0.00073 25.4 0.7 10 187-196 21-30 (75)
206 PF03672 UPF0154: Uncharacteri 24.3 1.5E+02 0.0032 22.3 4.0 14 180-193 12-25 (64)
207 PF07695 7TMR-DISM_7TM: 7TM di 24.2 1.1E+02 0.0023 23.7 3.4 20 178-197 133-152 (205)
208 PRK13130 H/ACA RNA-protein com 24.2 29 0.00062 25.2 0.3 9 94-102 6-14 (56)
209 PF13703 PepSY_TM_2: PepSY-ass 24.2 1.2E+02 0.0027 22.2 3.6 23 169-191 18-40 (88)
210 PLN02938 phosphatidylserine de 24.1 1.1E+02 0.0023 30.0 4.1 32 169-200 44-75 (428)
211 PRK01821 hypothetical protein; 24.1 74 0.0016 26.3 2.7 30 167-196 94-123 (133)
212 PF04341 DUF485: Protein of un 23.7 99 0.0021 23.3 3.1 40 162-204 51-90 (91)
213 PRK10557 hypothetical protein; 23.6 2.2E+02 0.0048 24.2 5.5 25 169-193 14-38 (192)
214 PHA03164 hypothetical protein; 23.4 64 0.0014 25.7 2.1 43 145-188 35-80 (88)
215 PF10587 EF-1_beta_acid: Eukar 23.4 30 0.00066 22.5 0.2 11 205-215 1-11 (28)
216 PF07297 DPM2: Dolichol phosph 23.4 75 0.0016 24.5 2.4 31 166-196 47-77 (78)
217 PRK07033 hypothetical protein; 23.3 2.2E+02 0.0047 27.4 5.9 29 177-205 238-266 (427)
218 PF15055 DUF4536: Domain of un 23.2 54 0.0012 23.3 1.5 15 184-198 16-30 (47)
219 COG1580 FliL Flagellar basal b 23.1 1.3E+02 0.0028 25.5 4.0 11 184-194 33-43 (159)
220 PF06570 DUF1129: Protein of u 23.1 80 0.0017 26.6 2.7 19 176-194 183-201 (206)
221 PF15330 SIT: SHP2-interacting 23.0 93 0.002 24.8 3.0 31 167-198 3-33 (107)
222 KOG3839 Lectin VIP36, involved 22.9 20 0.00044 34.4 -0.9 30 167-196 319-348 (351)
223 PF09777 OSTMP1: Osteopetrosis 22.9 38 0.00082 30.0 0.8 54 93-150 80-138 (237)
224 PRK07034 hypothetical protein; 22.8 1.9E+02 0.0041 29.2 5.6 28 178-205 325-352 (536)
225 KOG4782 Predicted membrane pro 22.7 57 0.0012 26.8 1.7 12 199-216 83-94 (108)
226 PRK07021 fliL flagellar basal 22.7 98 0.0021 25.4 3.1 33 160-192 13-45 (162)
227 PRK09579 multidrug efflux prot 22.6 73 0.0016 33.3 2.9 8 110-117 622-629 (1017)
228 PF10510 PIG-S: Phosphatidylin 22.5 1E+02 0.0022 29.7 3.7 19 178-196 499-517 (517)
229 PF13807 GNVR: G-rich domain o 22.5 1.3E+02 0.0029 21.7 3.5 18 167-184 60-77 (82)
230 PRK06975 bifunctional uroporph 22.2 3.1E+02 0.0068 27.5 7.0 11 35-45 163-173 (656)
231 PRK08388 putative monovalent c 22.2 1.3E+02 0.0028 24.1 3.7 30 166-195 79-108 (119)
232 PF04159 NB: NB glycoprotein; 22.0 67 0.0015 26.0 2.0 13 139-151 3-15 (100)
233 TIGR01167 LPXTG_anchor LPXTG-m 22.0 83 0.0018 19.1 2.0 9 186-194 25-33 (34)
234 PF11772 EpuA: DNA-directed RN 21.9 55 0.0012 23.0 1.3 19 170-188 3-21 (47)
235 TIGR03017 EpsF chain length de 21.7 1.6E+02 0.0034 26.8 4.5 25 168-192 399-423 (444)
236 PF14719 PID_2: Phosphotyrosin 21.7 1.5E+02 0.0033 25.8 4.2 19 184-202 120-138 (182)
237 PF11118 DUF2627: Protein of u 21.6 57 0.0012 25.4 1.4 27 178-204 51-77 (77)
238 PF13314 DUF4083: Domain of un 21.6 3.5E+02 0.0076 20.2 5.7 14 196-209 45-58 (58)
239 PF00301 Rubredoxin: Rubredoxi 21.5 72 0.0016 22.2 1.8 11 140-150 33-43 (47)
240 PF07092 DUF1356: Protein of u 21.1 1.7E+02 0.0037 26.7 4.6 34 101-134 176-209 (238)
241 COG0333 RpmF Ribosomal protein 21.1 36 0.00079 24.9 0.3 17 91-107 38-54 (57)
242 COG4968 PilE Tfp pilus assembl 20.8 2.6E+02 0.0056 23.9 5.3 16 189-204 34-49 (139)
243 PF14149 YhfH: YhfH-like prote 20.7 33 0.00071 23.4 -0.0 13 89-101 9-21 (37)
244 PRK10580 proY putative proline 20.7 70 0.0015 29.2 2.1 19 179-197 435-453 (457)
245 TIGR01478 STEVOR variant surfa 20.7 1.3E+02 0.0028 28.5 3.8 19 83-101 77-102 (295)
246 PF04431 Pec_lyase_N: Pectate 20.5 86 0.0019 22.8 2.1 13 188-200 7-19 (56)
247 PHA00626 hypothetical protein 20.4 38 0.00083 25.3 0.3 9 94-102 24-32 (59)
248 PRK14892 putative transcriptio 20.3 31 0.00067 27.3 -0.2 26 91-116 40-69 (99)
249 PRK08126 hypothetical protein; 20.2 2.8E+02 0.006 26.8 6.0 28 178-205 254-281 (432)
250 PF08763 Ca_chan_IQ: Voltage g 20.1 1.3E+02 0.0028 20.4 2.7 8 186-193 15-22 (35)
No 1
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=95.93 E-value=0.011 Score=41.32 Aligned_cols=30 Identities=23% Similarity=0.635 Sum_probs=18.8
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQ 199 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~q 199 (222)
|.+|+++.+ +.+++ .++|+.||.+||-.|+
T Consensus 13 VF~lVglv~--i~iva-~~iYRKw~aRkr~l~r 42 (43)
T PF08114_consen 13 VFCLVGLVG--IGIVA-LFIYRKWQARKRALQR 42 (43)
T ss_pred ehHHHHHHH--HHHHH-HHHHHHHHHHHHHHhc
Confidence 344444443 33333 4599999999997663
No 2
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=92.16 E-value=0.05 Score=37.35 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=17.5
Q ss_pred CCCCceEeehhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 159 GRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKK 194 (222)
Q Consensus 159 ~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqkkk 194 (222)
..+...+++.|.+-|.+ ++++.++++|..|+|+|
T Consensus 7 ~~~~vaIa~~VvVPV~v--I~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 7 NSNTVAIAVGVVVPVGV--IIIVLGAFLFFWYRRKK 40 (40)
T ss_pred CCceEEEEEEEEechHH--HHHHHHHHhheEEeccC
Confidence 34555555555554444 33333344666676664
No 3
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=91.60 E-value=0.16 Score=41.45 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=17.3
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhccC
Q 027567 166 AIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLFEDG 209 (222)
Q Consensus 166 ~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARflKLFEe~ 209 (222)
++.|+++|.+.+++++ ++..|-.+|++||..-...= +-++|
T Consensus 66 i~~Ii~gv~aGvIg~I-lli~y~irR~~Kk~~~~~~p--~P~~~ 106 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII-LLISYCIRRLRKKSSSDVQP--LPEED 106 (122)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHS----------------
T ss_pred eeehhHHHHHHHHHHH-HHHHHHHHHHhccCCCCCCC--CCCCC
Confidence 3456666666554444 46688889888886332222 56663
No 4
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=0.32 Score=35.78 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=24.5
Q ss_pred HHHHHHHHHhHHHHHHHhhhhccCcchhhhcC
Q 027567 186 AYKYWQKKKRQQDQARFLKLFEDGDEIEDELG 217 (222)
Q Consensus 186 ~yk~wqkkkRe~~qARflKLFEe~Dd~e~ELG 217 (222)
.|-||.+||.+.|||+-. .|..+||.+|+.|
T Consensus 27 ~~ayr~~~K~~~d~aa~~-~l~l~Dd~q~~~~ 57 (60)
T COG4736 27 YFAYRPGKKGEFDEAARG-ILPLNDDAQDAAG 57 (60)
T ss_pred HHHhcccchhhHHHHhcc-CCCCCcchhhhhc
Confidence 678899999999999863 3567888888765
No 5
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.87 E-value=0.28 Score=37.34 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=22.7
Q ss_pred CCCCceEeehhhHHHHH-HHHHHHHHHHHHHHHHH
Q 027567 159 GRKGMHVAIIVLISLLA-SIVTAIVLVAAYKYWQK 192 (222)
Q Consensus 159 ~~k~~~~~viii~~vl~-s~~~~~~~~~~yk~wqk 192 (222)
+.||.+-++||+++|.- ..++.+|.+++|-||||
T Consensus 6 ~~KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 6 EAKGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred cccCCCCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 44777666655544433 33556788999999996
No 6
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=90.47 E-value=0.029 Score=49.10 Aligned_cols=10 Identities=10% Similarity=0.152 Sum_probs=6.9
Q ss_pred CCCCCceEEe
Q 027567 124 ADNDGKYIRK 133 (222)
Q Consensus 124 ~~~dG~Y~~f 133 (222)
..++|+|+|.
T Consensus 79 ~Tk~gn~Fyl 88 (218)
T PF14283_consen 79 TTKSGNTFYL 88 (218)
T ss_pred EecCCCEEEE
Confidence 4457888765
No 7
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.98 E-value=0.44 Score=42.37 Aligned_cols=24 Identities=21% Similarity=0.548 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 027567 176 SIVTAIVLVAAYKYWQKKKRQQDQ 199 (222)
Q Consensus 176 s~~~~~~~~~~yk~wqkkkRe~~q 199 (222)
.++++++.+|+++|||.++-++.|
T Consensus 28 gviLg~~~lfGW~ywq~~q~~q~~ 51 (207)
T COG2976 28 GVILGLGGLFGWRYWQSHQVEQAQ 51 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667777899999999999743
No 8
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=88.89 E-value=0.35 Score=41.14 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhHH
Q 027567 183 LVAAYKYWQKKKRQQ 197 (222)
Q Consensus 183 ~~~~yk~wqkkkRe~ 197 (222)
+.++++.+|-|||++
T Consensus 110 ~yfvir~~R~r~~~r 124 (163)
T PF06679_consen 110 LYFVIRTFRLRRRNR 124 (163)
T ss_pred HHHHHHHHhhccccc
Confidence 345778887776544
No 9
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=88.32 E-value=1 Score=41.33 Aligned_cols=41 Identities=20% Similarity=0.570 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHhhhhcc
Q 027567 168 IVLISLLASIVTAIVLVAAYKYWQ--KKKRQQDQARFLKLFED 208 (222)
Q Consensus 168 iii~~vl~s~~~~~~~~~~yk~wq--kkkRe~~qARflKLFEe 208 (222)
.|++|+++.+++++.++..|-.|| |||+-.....-+||.+|
T Consensus 257 ~I~aSiiaIliIVLIMvIIYLILRYRRKKKmkKKlQYiKLL~e 299 (299)
T PF02009_consen 257 AIIASIIAILIIVLIMVIIYLILRYRRKKKMKKKLQYIKLLKE 299 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 466677776677777777777774 44444445555666554
No 10
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=87.53 E-value=0.83 Score=35.42 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhHHHHHHHhhh
Q 027567 185 AAYKYWQKKKRQQDQARFLKL 205 (222)
Q Consensus 185 ~~yk~wqkkkRe~~qARflKL 205 (222)
..|+.|+|-|||+.--|+++=
T Consensus 25 iv~ieYrk~~rqrkId~li~R 45 (81)
T PF00558_consen 25 IVYIEYRKIKRQRKIDRLIER 45 (81)
T ss_dssp HH------------CHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 368888888888776666654
No 11
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=86.18 E-value=2.2 Score=33.36 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHh
Q 027567 183 LVAAYKYWQKKKRQQDQARFL 203 (222)
Q Consensus 183 ~~~~yk~wqkkkRe~~qARfl 203 (222)
++++|.+||-+|-+++-++|.
T Consensus 16 ~i~~y~~~k~~ka~~~~~kL~ 36 (87)
T PF10883_consen 16 LILAYLWWKVKKAKKQNAKLQ 36 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344677777666666644443
No 12
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=85.28 E-value=1.4 Score=34.49 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 027567 179 TAIVLVAAYKYWQKKKRQQDQARF 202 (222)
Q Consensus 179 ~~~~~~~~yk~wqkkkRe~~qARf 202 (222)
++++...++++|++|.|-++|-|-
T Consensus 32 ill~c~c~~~~~r~r~~~~~q~rq 55 (102)
T PF11669_consen 32 ILLSCCCACRHRRRRRRLQQQQRQ 55 (102)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcc
Confidence 345667789999998887776653
No 13
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=84.62 E-value=3 Score=38.57 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027567 168 IVLISLLASIVTAIVLVAAYKYWQKKKRQQDQ 199 (222)
Q Consensus 168 iii~~vl~s~~~~~~~~~~yk~wqkkkRe~~q 199 (222)
++++++++ ++++++.++|.|||..++|+++
T Consensus 166 ~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~ 195 (414)
T PF06864_consen 166 LVLAAALV--VLALAGGYGWWYWQAQQEEARR 195 (414)
T ss_pred HHHHHHHH--HHHHHHHHHHHHhhhhhhHHHH
Confidence 34444443 3334456688899877544433
No 14
>PHA03265 envelope glycoprotein D; Provisional
Probab=84.55 E-value=1.1 Score=43.10 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=27.7
Q ss_pred CCccCCCCceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027567 155 DTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQA 200 (222)
Q Consensus 155 ~~~~~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qA 200 (222)
.+..+++++.+++||-++| .+++++|+. +|-.|+|||.....+
T Consensus 340 ~~~s~~~~~~~g~~ig~~i--~glv~vg~i-l~~~~rr~k~~~k~~ 382 (402)
T PHA03265 340 PPTSKSNSTFVGISVGLGI--AGLVLVGVI-LYVCLRRKKELKKSA 382 (402)
T ss_pred CCCCCCCCcccceEEccch--hhhhhhhHH-HHHHhhhhhhhhhhh
Confidence 4445667777776654443 345556655 899999998766544
No 15
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=84.36 E-value=1.3 Score=39.01 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=23.3
Q ss_pred ceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027567 163 MHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARF 202 (222)
Q Consensus 163 ~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARf 202 (222)
+++ +|+||......++|+++.++|-.|||+-.-..+.|+
T Consensus 99 ~~~-lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~~~~rl 137 (202)
T PF06365_consen 99 YPT-LIALVTSGSFLLLAILLGAGYCCHQRRSWSKKGQRL 137 (202)
T ss_pred ceE-EEehHHhhHHHHHHHHHHHHHHhhhhccCCcchhhh
Confidence 453 333333332335666667789999998765555554
No 16
>PTZ00046 rifin; Provisional
Probab=84.03 E-value=1.8 Score=41.16 Aligned_cols=41 Identities=24% Similarity=0.625 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHhhhhcc
Q 027567 168 IVLISLLASIVTAIVLVAAYKY--WQKKKRQQDQARFLKLFED 208 (222)
Q Consensus 168 iii~~vl~s~~~~~~~~~~yk~--wqkkkRe~~qARflKLFEe 208 (222)
.|++|+++.++++|.++..|-. +||||+-......+||.+|
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRKKKMkKKLQYiKLL~e 358 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRKKKMKKKLQYIKLLEE 358 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhcc
Confidence 5777777777777766666643 5777777777888888775
No 17
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=83.26 E-value=0.37 Score=40.30 Aligned_cols=50 Identities=16% Similarity=0.452 Sum_probs=8.3
Q ss_pred eeeCCCCCCCCcCCCCccCCCCceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027567 141 TFLCPKCKSGRTESDTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQ 199 (222)
Q Consensus 141 TFlCp~C~~~~~~~~~~~~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~q 199 (222)
|-+|..|.+...+| -..+.+|..|++.+++ +++++.++-+|+|-.|++.-
T Consensus 61 S~~C~~C~a~p~~p--------~~l~~pi~~sal~v~l-Vl~llsg~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 61 SPFCQGCPAAPPAP--------FPLLWPILGSALSVVL-VLALLSGFLVWRRCRRREKF 110 (129)
T ss_dssp -CCCCCHSS-SSS---------SSSS---------------------------------
T ss_pred CccccCCCCCCCCC--------cceehhhhhhHHHHHH-HHHHHHHHHHHhhhhccccC
Confidence 44588888765332 1223455556655443 35556677788888777653
No 18
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=82.78 E-value=2.1 Score=32.04 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHHHHHHHhhhhccCcc
Q 027567 186 AYKYWQKKKRQQDQARFLKLFEDGDE 211 (222)
Q Consensus 186 ~yk~wqkkkRe~~qARflKLFEe~Dd 211 (222)
.+-+..+|||+++++.++.=..-||+
T Consensus 17 f~~~rpqkk~~k~~~~m~~~Lk~Gd~ 42 (82)
T PF02699_consen 17 FLMIRPQKKQQKEHQEMLASLKPGDE 42 (82)
T ss_dssp HHTHHHHHHHHHHHTTGGG-------
T ss_pred hheecHHHHHHHHHHHHHHcCCCCCE
Confidence 34455666777777777766665554
No 19
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=82.75 E-value=2.2 Score=40.56 Aligned_cols=42 Identities=19% Similarity=0.564 Sum_probs=29.1
Q ss_pred ehhhHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHhhhhcc
Q 027567 167 IIVLISLLASIVTAIVLVAAYK--YWQKKKRQQDQARFLKLFED 208 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk--~wqkkkRe~~qARflKLFEe 208 (222)
-.|++|++|.++++|.++..|- -+||||+-......+||.+|
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILRYRRKKKMkKKLQYiKLL~e 353 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILRYRRKKKMKKKLQYIKLLNE 353 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhcc
Confidence 3677777777676666666664 35677777777778888765
No 20
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=82.74 E-value=3.7 Score=41.04 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=17.4
Q ss_pred cccccccccccccccccccccCCCC
Q 027567 84 SWQPLTEFLGTKCKRCGLYEEDTFN 108 (222)
Q Consensus 84 SWQPLT~~~~~KCKRCG~YEed~~~ 108 (222)
.|.--+.-...+|+.|=-|--|.+.
T Consensus 72 vW~~t~~~~~~v~qGC~~~~~D~~~ 96 (534)
T KOG3653|consen 72 VWNKTSGTIEVVKQGCWSHITDDIN 96 (534)
T ss_pred EeeccCCceeEEeecCccccCCccc
Confidence 4655666777888989876666554
No 21
>PRK05346 Na(+)-translocating NADH-quinone reductase subunit C; Provisional
Probab=82.28 E-value=3.5 Score=36.97 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=38.0
Q ss_pred cCCCCceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhc
Q 027567 158 VGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLFE 207 (222)
Q Consensus 158 ~~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARflKLFE 207 (222)
.+.+...++++++++++++++++.+.+++-..=+..|+-..|..+|....
T Consensus 5 ~~s~~~ti~~a~~l~lVcs~~vs~~a~~Lk~~q~~N~~ld~~~nIL~aag 54 (256)
T PRK05346 5 KDSNGKTLIVVVVLCLVCSVIVAGAAVGLKPRQEENKLLDKQKNILAAAG 54 (256)
T ss_pred CCCCceEEEEEeehHHHHHHHHHHHHHHhccHHHHhHHHHHHHHHHHHCC
Confidence 45677788889999999999999888866665555666666777777665
No 22
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=81.43 E-value=0.47 Score=43.77 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027567 168 IVLISLLASIVTAIVLVAAYKYWQKKKRQQDQA 200 (222)
Q Consensus 168 iii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qA 200 (222)
|++++++. +++.+++ +--||.||+|++.|+
T Consensus 218 iAL~sl~S--LVIGFvl-G~l~WKkkq~~~~~~ 247 (273)
T PF02404_consen 218 IALPSLFS--LVIGFVL-GALYWKKKQRSLTQE 247 (273)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHH--HHHHHHH-HHHHHHhhccccccc
Confidence 44444443 2233333 444999999977665
No 23
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=80.78 E-value=0.96 Score=40.07 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=18.7
Q ss_pred eEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027567 164 HVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQ 196 (222)
Q Consensus 164 ~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe 196 (222)
+..|-|+|++.+.+++ +.++++|-++|||.|.
T Consensus 270 ~~~vPIaVG~~La~lv-livLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLV-LIVLIAYLIGRRRSRA 301 (306)
T ss_pred cchHHHHHHHHHHHHH-HHHHHhheeEeccccc
Confidence 3445444544443333 3445589999988775
No 24
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=80.35 E-value=3.1 Score=44.49 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=29.3
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHhhhh
Q 027567 166 AIIVLISLLASIVTAIVLVAAYKYWQ-KKKRQQDQARFLKLF 206 (222)
Q Consensus 166 ~viii~~vl~s~~~~~~~~~~yk~wq-kkkRe~~qARflKLF 206 (222)
+++++++.++.++++++.|++|-+|| ++.+.+-+.|+|.+=
T Consensus 630 ~~~~viG~~Ll~~~~~~~~~~~~~~r~q~~~k~~~rr~lq~~ 671 (1177)
T KOG1025|consen 630 TAIAVIGGLLLAFFVFLGFSLYMCRRMQIIIKRTMRRLLQLE 671 (1177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHhc
Confidence 44556665555666667777888888 677778888888875
No 25
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=79.32 E-value=7.7 Score=26.73 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=22.1
Q ss_pred ceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027567 163 MHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQAR 201 (222)
Q Consensus 163 ~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qAR 201 (222)
.|.+++|+++.+ .++++.+++...++|+.|++-++..|
T Consensus 18 ~pl~l~il~~f~-~G~llg~l~~~~~~~~~r~~~~~~~k 55 (68)
T PF06305_consen 18 LPLGLLILIAFL-LGALLGWLLSLPSRLRLRRRIRRLRK 55 (68)
T ss_pred chHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554 45555556667777776655544433
No 26
>PF14981 FAM165: FAM165 family
Probab=79.00 E-value=6.6 Score=28.50 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 027567 181 IVLVAAYKYWQKKKRQQDQARF 202 (222)
Q Consensus 181 ~~~~~~yk~wqkkkRe~~qARf 202 (222)
-..|++-|.||+|+-|.++.+.
T Consensus 21 ClaFAgvK~yQ~krlEak~~k~ 42 (51)
T PF14981_consen 21 CLAFAGVKMYQRKRLEAKLKKL 42 (51)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 3357789999999988877553
No 27
>TIGR01938 nqrC NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit. This model represents the NqrC subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=76.52 E-value=4.6 Score=36.31 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=35.6
Q ss_pred CCCCceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhc
Q 027567 159 GRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLFE 207 (222)
Q Consensus 159 ~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARflKLFE 207 (222)
+.++..+++++++++++|++|+.+.+++-..=+.-|+...|..+|.-..
T Consensus 2 ds~~~ti~~a~~l~lVcs~~vs~aav~Lkp~Q~~N~~ldk~~nIL~aag 50 (251)
T TIGR01938 2 DSTSYTILVILVLSLVCSVLLAGVAVSLKPTQEENALLDKQKQILAAAG 50 (251)
T ss_pred CCcceEEEEEEehhHHHHHHHHHHHHHhcchHHHhHHHHHHHHHHHhCC
Confidence 3466778889999999999999888855555555555566666776554
No 28
>PF15102 TMEM154: TMEM154 protein family
Probab=75.46 E-value=1.2 Score=37.81 Aligned_cols=7 Identities=43% Similarity=0.828 Sum_probs=3.8
Q ss_pred CCCCCCC
Q 027567 119 CPGDFAD 125 (222)
Q Consensus 119 CpsDF~~ 125 (222)
=||+|++
T Consensus 23 t~s~~as 29 (146)
T PF15102_consen 23 TPSTFAS 29 (146)
T ss_pred ccccccc
Confidence 4556654
No 29
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=75.33 E-value=4.7 Score=29.52 Aligned_cols=8 Identities=38% Similarity=0.804 Sum_probs=3.0
Q ss_pred hhhHHHHH
Q 027567 168 IVLISLLA 175 (222)
Q Consensus 168 iii~~vl~ 175 (222)
|+|+++++
T Consensus 19 l~Iigil~ 26 (149)
T COG2165 19 LAIIGILA 26 (149)
T ss_pred HHHHHHHH
Confidence 33333333
No 30
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=75.15 E-value=12 Score=25.32 Aligned_cols=28 Identities=4% Similarity=0.114 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 027567 176 SIVTAIVLVAAYKYWQKKKRQQDQARFL 203 (222)
Q Consensus 176 s~~~~~~~~~~yk~wqkkkRe~~qARfl 203 (222)
.++++++...+...+++|+..++.++..
T Consensus 14 ~t~l~l~~li~~~~~~~r~~~~~l~~~~ 41 (45)
T TIGR03141 14 ITALVLAGLILWSLLDRRRLLRELRRLE 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555777888887777766654
No 31
>PF12669 P12: Virus attachment protein p12 family
Probab=73.66 E-value=4.3 Score=29.05 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=8.0
Q ss_pred HHHHHHHHHh
Q 027567 186 AYKYWQKKKR 195 (222)
Q Consensus 186 ~yk~wqkkkR 195 (222)
.++.|+++|+
T Consensus 17 ~r~~~k~~K~ 26 (58)
T PF12669_consen 17 IRKFIKDKKK 26 (58)
T ss_pred HHHHHHHhhc
Confidence 5889988776
No 32
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=72.62 E-value=4.1 Score=36.76 Aligned_cols=35 Identities=11% Similarity=0.376 Sum_probs=23.5
Q ss_pred CccCCCCceEeehhhHHHHHHHHHHHHHHHHHHHHH
Q 027567 156 THVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQ 191 (222)
Q Consensus 156 ~~~~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wq 191 (222)
.........++|.||.++++++++|+.++ +.+||+
T Consensus 30 ~~~~~d~~~I~iaiVAG~~tVILVI~i~v-~vR~CR 64 (221)
T PF08374_consen 30 SSRSKDYVKIMIAIVAGIMTVILVIFIVV-LVRYCR 64 (221)
T ss_pred ccccccceeeeeeeecchhhhHHHHHHHH-HHHHHh
Confidence 33444566778888888887777766655 557776
No 33
>COG2869 NqrC Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion]
Probab=71.60 E-value=4.3 Score=37.47 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=31.7
Q ss_pred ccCCCCceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027567 157 HVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQAR 201 (222)
Q Consensus 157 ~~~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qAR 201 (222)
+.+.-+..+.+|+++|+++|++++.+.+ +.|=-|...|+.|..|
T Consensus 6 ~~ds~~~tllvvl~lsLvcsvivagaav-~Lkp~Q~e~~~lDkq~ 49 (264)
T COG2869 6 NKDSTWGTLLVVLVLSLVCSVIVAGAAV-GLKPIQEEQALLDKQK 49 (264)
T ss_pred cccCcceeehhHHHHHHHHHHHHhhhhe-eeChHHHHHHHHhhhh
Confidence 3444555677789999999988886666 6677777777766544
No 34
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=70.69 E-value=1.4 Score=42.13 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=6.0
Q ss_pred eEEEEeeCCC
Q 027567 54 TVYFKCQGEN 63 (222)
Q Consensus 54 tVYF~C~Gen 63 (222)
++|.+|...+
T Consensus 236 ~~y~~C~~~~ 245 (439)
T PF02480_consen 236 RRYANCSPSG 245 (439)
T ss_dssp EEEEEEBTTC
T ss_pred HhhcCCCCCC
Confidence 4566666655
No 35
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=70.03 E-value=12 Score=28.33 Aligned_cols=22 Identities=18% Similarity=0.626 Sum_probs=14.7
Q ss_pred HHHHhHHHHHHHhhhhccCcch
Q 027567 191 QKKKRQQDQARFLKLFEDGDEI 212 (222)
Q Consensus 191 qkkkRe~~qARflKLFEe~Dd~ 212 (222)
..|||+++++.++.=...||+.
T Consensus 23 pqkK~~k~~~~m~~~L~~Gd~V 44 (84)
T TIGR00739 23 PQRKRRKAHKKLIESLKKGDKV 44 (84)
T ss_pred hHHHHHHHHHHHHHhCCCCCEE
Confidence 3566666777787777777653
No 36
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=69.72 E-value=14 Score=28.92 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027567 170 LISLLASIVTAIVLVAAYKYWQKKKR 195 (222)
Q Consensus 170 i~~vl~s~~~~~~~~~~yk~wqkkkR 195 (222)
|+++++++++++++.+.||.||-+++
T Consensus 6 iv~~~~~v~~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556666779999999888
No 37
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=68.62 E-value=14 Score=29.51 Aligned_cols=14 Identities=14% Similarity=0.657 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 027567 180 AIVLVAAYKYWQKK 193 (222)
Q Consensus 180 ~~~~~~~yk~wqkk 193 (222)
+++++..+++||+.
T Consensus 35 ~~~~~~~~r~~~~~ 48 (146)
T PF14316_consen 35 ILLLWRLWRRWRRN 48 (146)
T ss_pred HHHHHHHHHHHHcc
Confidence 34444455555554
No 38
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=67.87 E-value=4.6 Score=34.35 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=8.8
Q ss_pred EeehhhHHHHHHHHHHHHHHHHH
Q 027567 165 VAIIVLISLLASIVTAIVLVAAY 187 (222)
Q Consensus 165 ~~viii~~vl~s~~~~~~~~~~y 187 (222)
..++||+++++..+++ +.+++|
T Consensus 18 ~l~~iIi~~~llll~~-~G~~~~ 39 (182)
T PRK08455 18 ALLIIIIGVVVLLLLI-VGVIAM 39 (182)
T ss_pred eeEEehHHHHHHHHHH-HHHHHH
Confidence 3343444333333333 334455
No 39
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=67.39 E-value=8.2 Score=33.28 Aligned_cols=10 Identities=20% Similarity=0.544 Sum_probs=4.9
Q ss_pred ccCcchhhhc
Q 027567 207 EDGDEIEDEL 216 (222)
Q Consensus 207 Ee~Dd~e~EL 216 (222)
++|||.++|+
T Consensus 82 ~~deD~~~~~ 91 (248)
T PF11368_consen 82 EEDEDENEEY 91 (248)
T ss_pred cccchHHHHH
Confidence 3455555543
No 40
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=67.16 E-value=13 Score=29.97 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=14.8
Q ss_pred HHHHhHHHHHHHhhhhccCcch
Q 027567 191 QKKKRQQDQARFLKLFEDGDEI 212 (222)
Q Consensus 191 qkkkRe~~qARflKLFEe~Dd~ 212 (222)
.+|||+++|++++.=..-||+.
T Consensus 24 PQkKr~K~~~~m~~~Lk~GD~V 45 (109)
T PRK05886 24 RQRKAMQATIDLHESLQPGDRV 45 (109)
T ss_pred HHHHHHHHHHHHHHhcCCCCEE
Confidence 3466677777888777666653
No 41
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=67.11 E-value=3.1 Score=31.24 Aligned_cols=27 Identities=33% Similarity=0.674 Sum_probs=20.9
Q ss_pred ccCceeeecCCccccccccccccccccccc
Q 027567 72 EKNTTYVFKGEESWQPLTEFLGTKCKRCGL 101 (222)
Q Consensus 72 ~~~~~YtF~GeESWQPLT~~~~~KCKRCG~ 101 (222)
..+..|+|+|++ -.+ +.++-.|..||=
T Consensus 13 ~~~~~~~~~G~~--~~v-~~~~~~C~~CGe 39 (127)
T TIGR03830 13 VKDEPYTYKGES--ITI-GVPGWYCPACGE 39 (127)
T ss_pred eecceEEEcCEE--EEE-eeeeeECCCCCC
Confidence 344559999987 445 889999999984
No 42
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=66.13 E-value=3.5 Score=35.08 Aligned_cols=37 Identities=16% Similarity=0.391 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHhhhhc
Q 027567 171 ISLLASIVTAIVLVAAYK--YWQKKKRQQDQARFLKLFE 207 (222)
Q Consensus 171 ~~vl~s~~~~~~~~~~yk--~wqkkkRe~~qARflKLFE 207 (222)
+++++++.+.+.+|++|| -|.+++|.+.+.+.-..++
T Consensus 286 ~~~~~~~G~~~~~f~LYK~g~~~~~~~~r~~~~~~~~~~ 324 (354)
T PF05795_consen 286 SPVLSVLGIPLIFFLLYKFGSWFNRRRGRRRRIINNNFN 324 (354)
T ss_pred hhhhhhHHHHHHHHHHhccchhhcccccccccccccccc
Confidence 444444555666777999 5777666665554444443
No 43
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=66.10 E-value=8.2 Score=32.44 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=6.4
Q ss_pred HHHHHhHHHHHHHhh
Q 027567 190 WQKKKRQQDQARFLK 204 (222)
Q Consensus 190 wqkkkRe~~qARflK 204 (222)
||+|-|+.=|||.|.
T Consensus 87 W~eK~K~~~qa~~~e 101 (129)
T PF02060_consen 87 WQEKDKAYFQARVLE 101 (129)
T ss_dssp --S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 555555556666554
No 44
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=65.82 E-value=12 Score=33.24 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhccCcchhh
Q 027567 168 IVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLFEDGDEIED 214 (222)
Q Consensus 168 iii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARflKLFEe~Dd~e~ 214 (222)
+|++.+++.-++.++ +...|+|+-++......++++.|....+++.
T Consensus 25 ~Vm~~Ll~~Si~swa-iIieR~~~l~~~~~~~~~~~~~~~~~~~l~~ 70 (244)
T PRK10414 25 CVMIGLILASVVTWA-IFFSKSVEFFNQKRRLKREQQLLAEARSLDQ 70 (244)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 344444433334444 3489999987766666788888766555544
No 45
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=65.43 E-value=9.7 Score=30.80 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=17.9
Q ss_pred HHHHHHhHHHHHHHhhhhccCcch
Q 027567 189 YWQKKKRQQDQARFLKLFEDGDEI 212 (222)
Q Consensus 189 ~wqkkkRe~~qARflKLFEe~Dd~ 212 (222)
+=.+|||+++|+.++.=..-||+.
T Consensus 20 iRPQkKr~Ke~~em~~sLk~GD~V 43 (113)
T PRK06531 20 QRQQKKQAQERQNQLNAIQKGDEV 43 (113)
T ss_pred echHHHHHHHHHHHHHhcCCCCEE
Confidence 335677888888888887777764
No 46
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=63.12 E-value=12 Score=32.10 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=16.1
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYWQKKK 194 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~wqkkk 194 (222)
|.=|||+++ +.+++++..|=-+||||
T Consensus 117 IaGIvsav~--valvGAvsSyiaYqkKK 142 (169)
T PF12301_consen 117 IAGIVSAVV--VALVGAVSSYIAYQKKK 142 (169)
T ss_pred hhhHHHHHH--HHHHHHHHHHHHHHhhc
Confidence 444556555 34456666777778887
No 47
>PRK10506 hypothetical protein; Provisional
Probab=63.07 E-value=22 Score=28.96 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhh
Q 027567 181 IVLVAAYKYWQKKKRQQDQARFLKLF 206 (222)
Q Consensus 181 ~~~~~~yk~wqkkkRe~~qARflKLF 206 (222)
..++..|.-|+.+.|-++.++-++-+
T Consensus 28 ~~a~p~~~~~~~~~~~~~~~~~l~~~ 53 (162)
T PRK10506 28 AWGLYGWQRWQQRQRLWQTAQQLLDF 53 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344667788888877777766543
No 48
>PRK05978 hypothetical protein; Provisional
Probab=62.44 E-value=11 Score=31.86 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=14.6
Q ss_pred ccccccccccccccccc
Q 027567 84 SWQPLTEFLGTKCKRCG 100 (222)
Q Consensus 84 SWQPLT~~~~~KCKRCG 100 (222)
-|||+..=-.-||.|||
T Consensus 24 ~~~~~~rGl~grCP~CG 40 (148)
T PRK05978 24 VGRAMWRGFRGRCPACG 40 (148)
T ss_pred hHHHHHHHHcCcCCCCC
Confidence 57888877788999999
No 49
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=61.89 E-value=8.6 Score=34.76 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=13.1
Q ss_pred cCceeeecCCcccccccc
Q 027567 73 KNTTYVFKGEESWQPLTE 90 (222)
Q Consensus 73 ~~~~YtF~GeESWQPLT~ 90 (222)
...|+.|.|. +|+.+..
T Consensus 114 ~~~l~~~dGs-~W~~i~~ 130 (281)
T PF12768_consen 114 STFLMKYDGS-SWSSIGS 130 (281)
T ss_pred CceEEEEcCC-ceEeccc
Confidence 4468889887 6998876
No 50
>PF02430 AMA-1: Apical membrane antigen 1; InterPro: IPR003298 A novel antigen of Plasmodium falciparum has been cloned that contains a hydrophobic domain typical of an integral membrane protein. The antigen is designated apical membrane antigen 1 (AMA-1) by virtue of appearing to be located in the apical complex []. AMA-1 appears to be transported to the merozoite surface close to the time of schizont rupture. The 66kDa merozoite surface antigen (PK66) of Plasmodium knowlesi, a simian malaria, possesses vaccine-related properties believed to originate from a receptor-like role in parasite invasion of erythrocytes []. The sequence of PK66 is conserved throughout plasmodium, and shows high similarity to P. falciparum AMA-1. Following schizont rupture, the distribution of PK66 changes in a coordinate manner associated with merozoite invasion. Prior to rupture, the protein is concentrated at the apical end, following which it distributes itself entirely across the surface of the free merozoite. Immunofluorescence studies suggest that, during invasion, PK66 is excluded from the erythrocyte at, and behind, the invasion interface []. ; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2Y8R_D 2X2Z_A 2Y8T_A 2Y8S_D 1HN6_A 2Z8V_B 2Z8W_A 1Z40_E 2Q8B_A 2Q8A_A ....
Probab=61.61 E-value=2.6 Score=41.45 Aligned_cols=29 Identities=24% Similarity=0.566 Sum_probs=0.0
Q ss_pred ehhhHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 027567 167 IIVLISLLASIVTAIVLVAAYK-YWQKKKR 195 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk-~wqkkkR 195 (222)
+||+++..+.++++++++..|| +|.-||.
T Consensus 431 ~~~~~~~~~~~~~~l~~~~~~k~~~~~kk~ 460 (471)
T PF02430_consen 431 VIIISIATGAVLLALAIYWYYKRLWKTKKK 460 (471)
T ss_dssp ------------------------------
T ss_pred ehhhHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 3444444444456666666777 6665443
No 51
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=60.95 E-value=9.3 Score=27.25 Aligned_cols=13 Identities=23% Similarity=0.979 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhH
Q 027567 184 VAAYKYWQKKKRQ 196 (222)
Q Consensus 184 ~~~yk~wqkkkRe 196 (222)
+..|-+|||+|+|
T Consensus 34 lt~yal~r~~~~~ 46 (46)
T PF11431_consen 34 LTIYALWRRRRKQ 46 (46)
T ss_dssp HHHHHHHHHHHS-
T ss_pred HHHHHHHHHhccC
Confidence 4479999998864
No 52
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=60.90 E-value=12 Score=25.17 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhHHHHHHHh
Q 027567 184 VAAYKYWQKKKRQQDQARFL 203 (222)
Q Consensus 184 ~~~yk~wqkkkRe~~qARfl 203 (222)
.+.|-||.|+|+.-+.|.-|
T Consensus 25 i~~w~~~~~~k~~~e~aa~l 44 (49)
T PF05545_consen 25 IVIWAYRPRNKKRFEEAANL 44 (49)
T ss_pred HHHHHHcccchhhHHHHHcc
Confidence 34677887755555555433
No 53
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=60.87 E-value=15 Score=27.43 Aligned_cols=55 Identities=25% Similarity=0.477 Sum_probs=34.1
Q ss_pred cccceeeeEEEeeeeeeeeeccccC---CCCeEEEEeeCCCcccCCCccccCceeeecCCcccccc---cccccccc
Q 027567 26 LPGLVLAAVVTLDSIKIYKTHEWLD---NKPTVYFKCQGENKKILPDVKEKNTTYVFKGEESWQPL---TEFLGTKC 96 (222)
Q Consensus 26 ~PG~~~~~~VTL~Si~IF~THEW~~---~kptVYF~C~Genkt~LPDVk~~~~~YtF~GeESWQPL---T~~~~~KC 96 (222)
..++-...+|+++|..-=.+=+|-. ..+.+.|. +-|...|+.+|++. ++++...|
T Consensus 19 ~~~lp~P~nv~~~s~nf~~iL~W~~~~~~~~~~~yt----------------Vq~~~~~~~~W~~v~~C~~i~~~~C 79 (107)
T PF01108_consen 19 SASLPAPQNVTVDSVNFKHILRWDPGPGSPPNVTYT----------------VQYKKYGSSSWKDVPGCQNITETSC 79 (107)
T ss_dssp -SSGSSCEEEEEEEETTEEEEEEEESTTSSSTEEEE----------------EEEEESSTSCEEEECCEEEESSSEE
T ss_pred cccCCCCCeeEEEEECCceEEEeCCCCCCCCCeEEE----------------EEEEecCCcceeeccceecccccce
Confidence 3444555689999987777777842 22233332 23446788999998 56666555
No 54
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=60.14 E-value=18 Score=30.92 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhccCcchhh
Q 027567 184 VAAYKYWQKKKRQQDQARFLKLFEDGDEIED 214 (222)
Q Consensus 184 ~~~yk~wqkkkRe~~qARflKLFEe~Dd~e~ 214 (222)
+..+|+|+-++......++++-|....+++.
T Consensus 30 iiieR~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (211)
T TIGR02797 30 IWIAKSVELAGARRRLKRALKALGEARTLAE 60 (211)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCCCHHH
Confidence 3478988877766666777787766555544
No 55
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=60.10 E-value=38 Score=22.83 Aligned_cols=28 Identities=4% Similarity=0.190 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027567 174 LASIVTAIVLVAAYKYWQKKKRQQDQAR 201 (222)
Q Consensus 174 l~s~~~~~~~~~~yk~wqkkkRe~~qAR 201 (222)
-+.++++++...+...|++|+-.++.+|
T Consensus 11 Yg~t~~~l~~l~~~~~~~~r~~~~~l~~ 38 (46)
T PF04995_consen 11 YGVTALVLAGLIVWSLRRRRRLRKELKR 38 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555557777777665555444
No 56
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=59.81 E-value=26 Score=32.41 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027567 170 LISLLASIVTAIVLVAAYKYWQKKKRQQDQA 200 (222)
Q Consensus 170 i~~vl~s~~~~~~~~~~yk~wqkkkRe~~qA 200 (222)
.+++++.+++++.++.+-|+=||||+||-..
T Consensus 220 ~~G~~~L~ll~~lv~~~vr~krk~k~~eMEr 250 (278)
T PF06697_consen 220 VGGVVLLGLLSLLVAMLVRYKRKKKIEEMER 250 (278)
T ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4555555555445554555555555554433
No 57
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.96 E-value=28 Score=25.44 Aligned_cols=9 Identities=11% Similarity=-0.120 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 027567 186 AYKYWQKKK 194 (222)
Q Consensus 186 ~yk~wqkkk 194 (222)
.+..+.++.
T Consensus 32 ~~~~~~~~~ 40 (149)
T COG2165 32 SLQGSIDKA 40 (149)
T ss_pred hhhhHHHHH
Confidence 344444444
No 58
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=57.30 E-value=5.7 Score=33.77 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=24.5
Q ss_pred eEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027567 164 HVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQD 198 (222)
Q Consensus 164 ~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~ 198 (222)
-+++-+|+++++.++++.+++..|++.+|+|---|
T Consensus 100 Yia~~~il~il~~i~is~~~~~~yr~~r~~~~~~~ 134 (139)
T PHA03099 100 YIPSPGIVLVLVGIIITCCLLSVYRFTRRTKLPLQ 134 (139)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhheeeecccCchh
Confidence 44555666666666777778888999988875443
No 59
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=57.30 E-value=22 Score=28.45 Aligned_cols=34 Identities=15% Similarity=0.493 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 027567 173 LLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLF 206 (222)
Q Consensus 173 vl~s~~~~~~~~~~yk~wqkkkRe~~qARflKLF 206 (222)
+++.+++++.++++|..|++.||.+-+..-|+.+
T Consensus 25 ll~~lll~~~~~~~~~~~r~~~~~~yrr~Al~~L 58 (146)
T PF14316_consen 25 LLLALLLLLLILLLWRLWRRWRRNRYRREALREL 58 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 3444467788888888888888874443334433
No 60
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=56.00 E-value=11 Score=34.77 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=21.1
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 166 AIIVLISLLASIVTAIVLVAAYKYWQKK 193 (222)
Q Consensus 166 ~viii~~vl~s~~~~~~~~~~yk~wqkk 193 (222)
++-|+|.++|.+++++.++++||.-+||
T Consensus 190 ilpvvIaliVitl~vf~LvgLyr~C~k~ 217 (259)
T PF07010_consen 190 ILPVVIALIVITLSVFTLVGLYRMCWKT 217 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455666677778888889999998776
No 61
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=55.19 E-value=5.8 Score=25.09 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=20.8
Q ss_pred cCceeeecCCccccccccccccccccccc
Q 027567 73 KNTTYVFKGEESWQPLTEFLGTKCKRCGL 101 (222)
Q Consensus 73 ~~~~YtF~GeESWQPLT~~~~~KCKRCG~ 101 (222)
.+..|.++|+. --+.++++..|..||-
T Consensus 14 ~~~~~~~~~~~--~~i~~vp~~~C~~CGE 40 (46)
T TIGR03831 14 TTETYEYGGEL--IVIENVPALVCPQCGE 40 (46)
T ss_pred EEEEEEeCCEE--EEEeCCCccccccCCC
Confidence 35667777766 5677899999999994
No 62
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=54.50 E-value=22 Score=28.18 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 027567 181 IVLVAAYKYWQKKKRQQDQAR 201 (222)
Q Consensus 181 ~~~~~~yk~wqkkkRe~~qAR 201 (222)
++-+..|..|++.+|.+.|+|
T Consensus 134 i~Y~l~~~~~~~~r~~r~~~r 154 (154)
T PF09835_consen 134 ISYFLVYFLVRKYRKRRRKRR 154 (154)
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 444556677776666666655
No 63
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=54.46 E-value=26 Score=26.36 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhhccCcchhh
Q 027567 178 VTAIVLVAAYKYWQKKKRQQDQARFLKLFEDGDEIED 214 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe~~qARflKLFEe~Dd~e~ 214 (222)
++.+++-++||+---..|.+.+|-|.|=++-.+|.|.
T Consensus 26 ~ls~~~~~~~kf~v~~pRKk~YadFYknYD~~k~fe~ 62 (73)
T PF02937_consen 26 VLSLGVAAAYKFGVAEPRKKAYADFYKNYDPMKDFEE 62 (73)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHT--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHccChHHHHHH
Confidence 3334445567766666777889999998887777663
No 64
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.39 E-value=22 Score=27.88 Aligned_cols=7 Identities=29% Similarity=0.862 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 027567 184 VAAYKYW 190 (222)
Q Consensus 184 ~~~yk~w 190 (222)
++.|.+|
T Consensus 14 ~l~y~l~ 20 (105)
T PRK00888 14 WLQYSLW 20 (105)
T ss_pred HHHHHHh
Confidence 3355544
No 65
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=53.67 E-value=26 Score=30.62 Aligned_cols=26 Identities=12% Similarity=0.136 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhccC
Q 027567 184 VAAYKYWQKKKRQQDQARFLKLFEDG 209 (222)
Q Consensus 184 ~~~yk~wqkkkRe~~qARflKLFEe~ 209 (222)
+...|+|+-++...+..+|++-|.+.
T Consensus 31 IiieR~~~l~~~~~~~~~f~~~~~~~ 56 (227)
T PRK10801 31 IIIQRTRILNAAAREAEAFEDKFWSG 56 (227)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44789999888888888888877553
No 66
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=53.35 E-value=11 Score=35.16 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=17.2
Q ss_pred cCCCCceEeehhhHHHHHHHHHHHHHHHHHHHH
Q 027567 158 VGRKGMHVAIIVLISLLASIVTAIVLVAAYKYW 190 (222)
Q Consensus 158 ~~~k~~~~~viii~~vl~s~~~~~~~~~~yk~w 190 (222)
.++.+++-+.|+=|+|.| ||++|.+++|--|
T Consensus 359 ~n~s~LstgaIaGIsvav--vvvVgglvGfLcW 389 (397)
T PF03302_consen 359 TNKSGLSTGAIAGISVAV--VVVVGGLVGFLCW 389 (397)
T ss_pred cccccccccceeeeeehh--HHHHHHHHHHHhh
Confidence 355566766666666655 3334444455555
No 67
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=52.62 E-value=16 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=13.7
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYWQKKK 194 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~wqkkk 194 (222)
|.||++|++..+++...++.|---.||-
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4555555554444444444554444443
No 68
>PRK01844 hypothetical protein; Provisional
Probab=50.96 E-value=25 Score=26.95 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=9.9
Q ss_pred ehhhHHHHHHHHHH-HHHHHHHHHHHH
Q 027567 167 IIVLISLLASIVTA-IVLVAAYKYWQK 192 (222)
Q Consensus 167 viii~~vl~s~~~~-~~~~~~yk~wqk 192 (222)
+.|++.+++.++-+ +|.|++-||-.|
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333333 333444444433
No 69
>PHA02088 hypothetical protein
Probab=50.67 E-value=20 Score=29.81 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=13.8
Q ss_pred HHHHHHHH-HHHHHHHHhHHHHH
Q 027567 179 TAIVLVAA-YKYWQKKKRQQDQA 200 (222)
Q Consensus 179 ~~~~~~~~-yk~wqkkkRe~~qA 200 (222)
++.+-|-+ =..|+||-|-||.|
T Consensus 14 liac~~s~wd~~w~~k~~~e~~~ 36 (125)
T PHA02088 14 LIACCFSTWDSRWRKKARNEQAK 36 (125)
T ss_pred HHHhhhHHhhHHHHHHHHHHHHH
Confidence 33444434 36898888887765
No 70
>PRK01658 holin-like protein; Validated
Probab=50.67 E-value=18 Score=29.15 Aligned_cols=24 Identities=8% Similarity=0.221 Sum_probs=15.0
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHH
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYW 190 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~w 190 (222)
+.+++++.+||++++++.+..-.|
T Consensus 89 ~~il~~ivvsT~l~l~vtg~~~~~ 112 (122)
T PRK01658 89 ISLFLVVVISTFVVMIVTGYLTQL 112 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777666544444
No 71
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=50.33 E-value=27 Score=27.85 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 027567 181 IVLVAAYKYWQKKKRQQDQARF 202 (222)
Q Consensus 181 ~~~~~~yk~wqkkkRe~~qARf 202 (222)
+.+.+-.-.|+.|||+..-++-
T Consensus 13 l~l~asl~~wr~~~rq~k~~~~ 34 (107)
T PF15330_consen 13 LSLAASLLAWRMKQRQKKAGQY 34 (107)
T ss_pred HHHHHHHHHHHHHhhhccccCC
Confidence 3334466688888887655443
No 72
>PF15102 TMEM154: TMEM154 protein family
Probab=49.77 E-value=4.1 Score=34.62 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=9.0
Q ss_pred EeehhhHHHHHHHHHHHHHHHH
Q 027567 165 VAIIVLISLLASIVTAIVLVAA 186 (222)
Q Consensus 165 ~~viii~~vl~s~~~~~~~~~~ 186 (222)
+++|+|-+||.++++++.+++.
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv 79 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLV 79 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHhe
Confidence 3334444344444444444433
No 73
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=49.73 E-value=38 Score=26.79 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=13.8
Q ss_pred HHHhHHHHHHHhhhhccCcch
Q 027567 192 KKKRQQDQARFLKLFEDGDEI 212 (222)
Q Consensus 192 kkkRe~~qARflKLFEe~Dd~ 212 (222)
.|||+++++.+++=..-||+.
T Consensus 39 qkK~~k~~~~~~~~Lk~Gd~V 59 (106)
T PRK05585 39 QQKRQKEHKKMLSSLAKGDEV 59 (106)
T ss_pred HHHHHHHHHHHHHhcCCCCEE
Confidence 556666677777766666654
No 74
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=49.55 E-value=8.5 Score=31.55 Aligned_cols=9 Identities=56% Similarity=1.180 Sum_probs=3.8
Q ss_pred ceeeeCCCC
Q 027567 139 DATFLCPKC 147 (222)
Q Consensus 139 nATFlCp~C 147 (222)
+++|=|..|
T Consensus 25 ~~~~CCG~C 33 (179)
T PF13908_consen 25 DFTFCCGTC 33 (179)
T ss_pred CcceecCCc
Confidence 344444444
No 75
>PF08320 PIG-X: PIG-X / PBN1; InterPro: IPR013233 Mammalian PIG-X and yeast PBN1 are essential components of glycosylphosphatidylinositol-mannosyltransferase I []. These enzymes are involved in the transfer of sugar molecules.; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane
Probab=49.21 E-value=55 Score=27.65 Aligned_cols=14 Identities=29% Similarity=0.885 Sum_probs=9.8
Q ss_pred CCeEEEEeeCCCcc
Q 027567 52 KPTVYFKCQGENKK 65 (222)
Q Consensus 52 kptVYF~C~Genkt 65 (222)
.|.||..|..++..
T Consensus 119 ~P~vf~~C~~~~~~ 132 (207)
T PF08320_consen 119 PPDVFWACDQEDSE 132 (207)
T ss_pred CCcEEEECCCCCcc
Confidence 48888888766554
No 76
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=48.74 E-value=30 Score=32.38 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHH
Q 027567 170 LISLLASIVTAIVLVAAYKYWQ-KKKRQQDQAR 201 (222)
Q Consensus 170 i~~vl~s~~~~~~~~~~yk~wq-kkkRe~~qAR 201 (222)
--+++++.++.+++.++|.|-+ +|+|.++|+|
T Consensus 74 w~~~~~t~Alg~~~~g~~~Y~~~~k~~~~e~~r 106 (280)
T KOG2792|consen 74 WRSLLATFALGLGLGGALAYLKKEKARLLEKER 106 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444556666667888887 5566666665
No 77
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=47.64 E-value=33 Score=28.15 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 027567 184 VAAYKYWQKK 193 (222)
Q Consensus 184 ~~~yk~wqkk 193 (222)
.++|-||-++
T Consensus 33 ~gg~~~~~~~ 42 (162)
T PRK07021 33 GAGYSWWLSK 42 (162)
T ss_pred HHHHHHHhhc
Confidence 3455555554
No 78
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=47.56 E-value=5.6 Score=29.89 Aligned_cols=8 Identities=13% Similarity=0.542 Sum_probs=0.5
Q ss_pred HHHHHHhH
Q 027567 189 YWQKKKRQ 196 (222)
Q Consensus 189 ~wqkkkRe 196 (222)
.+|-|||.
T Consensus 33 iyR~rkkd 40 (64)
T PF01034_consen 33 IYRMRKKD 40 (64)
T ss_dssp ----S---
T ss_pred HHHHHhcC
Confidence 34445543
No 79
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=47.29 E-value=15 Score=34.44 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=12.7
Q ss_pred CceEEeeccccceeeeCCC
Q 027567 128 GKYIRKTKKEFDATFLCPK 146 (222)
Q Consensus 128 G~Y~~fKekeFnATFlCp~ 146 (222)
++|.-.-.++=.+++.|.+
T Consensus 194 N~WLyv~~~~~~l~~~C~~ 212 (361)
T PF12259_consen 194 NRWLYVLQKETSLNFQCGD 212 (361)
T ss_pred CceEEEEccceEEEEEeCC
Confidence 5555566677777777764
No 80
>PF14163 SieB: Superinfection exclusion protein B
Probab=47.03 E-value=41 Score=26.90 Aligned_cols=11 Identities=18% Similarity=0.597 Sum_probs=5.4
Q ss_pred HHHHHhHHHHH
Q 027567 190 WQKKKRQQDQA 200 (222)
Q Consensus 190 wqkkkRe~~qA 200 (222)
|++|++++.+.
T Consensus 63 ~~~k~~~~~~~ 73 (151)
T PF14163_consen 63 YQRKRKKKKIE 73 (151)
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 81
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=46.90 E-value=29 Score=32.93 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhHH---HHHHHhhhhccCcchh
Q 027567 178 VTAIVLVAAYKYWQKKKRQQ---DQARFLKLFEDGDEIE 213 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe~---~qARflKLFEe~Dd~e 213 (222)
..+++...+..||||.|+.. +.....+.++++++..
T Consensus 207 ~~~i~~~~~~~ya~kv~~~p~~~~~~~~~~~~~~~~~~~ 245 (465)
T PF03606_consen 207 FTLIAIAYVHRYAQKVKKDPSYSEVYEDDEAEEEEEEEQ 245 (465)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhhhHHhhhhccccc
Confidence 34455556788999877765 3344555566555443
No 82
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=46.83 E-value=34 Score=33.59 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=30.7
Q ss_pred eeccccceeeeCCCCCCCC---------cCCCCccCCCCceEeehhhHHHHHHHHHHHHHHHHHHH
Q 027567 133 KTKKEFDATFLCPKCKSGR---------TESDTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKY 189 (222)
Q Consensus 133 fKekeFnATFlCp~C~~~~---------~~~~~~~~~k~~~~~viii~~vl~s~~~~~~~~~~yk~ 189 (222)
.+++-++|...|+-|...- ....++....++ ..+|..++| ...+.+|++||+
T Consensus 229 l~~~~d~arv~c~~~~~~yg~~pf~sff~~~~~~ls~f~~--~~~~~Fs~l---g~~l~fF~lYKf 289 (420)
T PTZ00473 229 LGDGIDTARVQCKVCEREYGSNPFFSFFANYKPDLSSFGK--VLVISFSAL---GGSLSLFILYKF 289 (420)
T ss_pred cccCCCCceecccchhhhcCCCcceeeeccCCCccCccce--eehhhHHHH---HHHHHHHHHHhc
Confidence 4578899999999998763 222333333333 123333333 345666789997
No 83
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=46.47 E-value=20 Score=36.74 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=38.2
Q ss_pred ccccCCCCCCCCCCceEEeeccccceeeeCCCCCCCCcCC--CCccCCCCceEeehhhHHHHHHHHHHHHHHHHHHHHHH
Q 027567 115 EWEFCPGDFADNDGKYIRKTKKEFDATFLCPKCKSGRTES--DTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQK 192 (222)
Q Consensus 115 EWElCpsDF~~~dG~Y~~fKekeFnATFlCp~C~~~~~~~--~~~~~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqk 192 (222)
+-.-||++.+. .|.=-+.++=.=++...=|+|...+... ++.+..+.+..+..+++.+++.+++.++.+.+++.|++
T Consensus 624 ~~~~~~~~C~g-~GVCnn~~~ChC~~gwapp~C~~~~~~gs~~sg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 702 (716)
T KOG3607|consen 624 NSSCCPTTCNG-HGVCNNELNCHCEPGWAPPFCFIFGYGGSIDSGPPPKNGVAGTNLIILILLLIILVLLLILGYTLWGK 702 (716)
T ss_pred cccccccccCC-CcccCCCcceeeCCCCCCCccccccCCCCcCCCccccccccchhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34568888743 2222222221222233336777776222 22223333333333333333334455577778999996
Q ss_pred HHhH
Q 027567 193 KKRQ 196 (222)
Q Consensus 193 kkRe 196 (222)
++-+
T Consensus 703 ~~~~ 706 (716)
T KOG3607|consen 703 KKSE 706 (716)
T ss_pred cccc
Confidence 6544
No 84
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=46.43 E-value=40 Score=26.76 Aligned_cols=30 Identities=10% Similarity=0.419 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 027567 168 IVLISLLASIVTAIVLVAAYKYWQKKKRQQ 197 (222)
Q Consensus 168 iii~~vl~s~~~~~~~~~~yk~wqkkkRe~ 197 (222)
.++++++++++.-..+..+.|.+||||+++
T Consensus 124 ~~i~~~v~~~i~Y~l~~~~~~~~r~~r~~~ 153 (154)
T PF09835_consen 124 SLILGIVLGIISYFLVYFLVRKYRKRRRKR 153 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666667777777788999999999875
No 85
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=46.36 E-value=59 Score=31.13 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhHHHHHH
Q 027567 185 AAYKYWQKKKRQQDQAR 201 (222)
Q Consensus 185 ~~yk~wqkkkRe~~qAR 201 (222)
+++-||++.+..++++.
T Consensus 52 ~g~y~~~~qq~~~~~~~ 68 (390)
T PRK10920 52 AGLYYHGKQQAQNQTAT 68 (390)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34446666555444443
No 86
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=46.16 E-value=13 Score=30.04 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 027567 178 VTAIVLVAAYKYWQKKKRQQDQ 199 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe~~q 199 (222)
+++++..++|-++.++..|.++
T Consensus 15 ~l~~~g~~~~~~~~~~~~~~~~ 36 (142)
T PRK07718 15 VIALIGTAALVLVMGFSEAKKQ 36 (142)
T ss_pred HHHHHHHHHHhhhcccCCcccc
Confidence 3444556688888887666654
No 87
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=45.24 E-value=23 Score=32.55 Aligned_cols=30 Identities=13% Similarity=0.392 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027567 169 VLISLLASIVTAIVLVAAYKYWQKKKRQQD 198 (222)
Q Consensus 169 ii~~vl~s~~~~~~~~~~yk~wqkkkRe~~ 198 (222)
|++-++.++++++++++.|++|..+||.+.
T Consensus 208 iFLY~~l~a~~~l~l~~~~~~l~~~~kkr~ 237 (285)
T PF03896_consen 208 IFLYLFLAALGVLGLYFVYQFLPSSKKKRK 237 (285)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 555555566777888899999987666544
No 88
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=45.21 E-value=7.6 Score=37.04 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=14.5
Q ss_pred eEeehhhHHHHHHHHHHHHHHHHHHHHHH
Q 027567 164 HVAIIVLISLLASIVTAIVLVAAYKYWQK 192 (222)
Q Consensus 164 ~~~viii~~vl~s~~~~~~~~~~yk~wqk 192 (222)
.+++|+..+|..++.++++.+.-||.|+.
T Consensus 199 ~lv~Iv~~cvaG~aAliva~~cW~Rlqr~ 227 (341)
T PF06809_consen 199 TLVLIVVCCVAGAAALIVAGYCWYRLQRE 227 (341)
T ss_pred eeehhHHHHHHHHHHHHHhhheEEEeccc
Confidence 34444444555555555555555555443
No 89
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=44.89 E-value=8.7 Score=23.48 Aligned_cols=13 Identities=62% Similarity=1.106 Sum_probs=7.3
Q ss_pred ccccccccccccC
Q 027567 93 GTKCKRCGLYEED 105 (222)
Q Consensus 93 ~~KCKRCG~YEed 105 (222)
|+||.|||-|-++
T Consensus 1 G~~C~rC~~~~~~ 13 (30)
T PF06827_consen 1 GEKCPRCWNYIED 13 (30)
T ss_dssp TSB-TTT--BBEE
T ss_pred CCcCccCCCcceE
Confidence 5789999987553
No 90
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=44.68 E-value=29 Score=27.33 Aligned_cols=7 Identities=14% Similarity=0.539 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 027567 189 YWQKKKR 195 (222)
Q Consensus 189 ~wqkkkR 195 (222)
-=||++|
T Consensus 23 ~rRR~r~ 29 (130)
T PF12273_consen 23 NRRRRRR 29 (130)
T ss_pred HHHHhhc
Confidence 3345544
No 91
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=44.64 E-value=11 Score=29.43 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027567 168 IVLISLLASIVTAIVLVAAYKYWQKKKRQQD 198 (222)
Q Consensus 168 iii~~vl~s~~~~~~~~~~yk~wqkkkRe~~ 198 (222)
||..=++++ ++|+++++..---||+++||+
T Consensus 39 iV~~D~vlT-LLIv~~vy~car~r~r~~~~~ 68 (79)
T PF07213_consen 39 IVAADAVLT-LLIVLVVYYCARPRRRPTQED 68 (79)
T ss_pred HHHHHHHHH-HHHHHHHHhhcccccCCcccC
Confidence 333334443 444443323333344444443
No 92
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=44.47 E-value=36 Score=25.76 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=22.6
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 027567 166 AIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLK 204 (222)
Q Consensus 166 ~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARflK 204 (222)
++=-|.+.|+.+++.+++++..-+|--+-.+++..-+-+
T Consensus 9 ~LnGi~G~LIAvvLLLsIl~~lt~~ai~~Qq~~At~~Y~ 47 (66)
T PF13179_consen 9 GLNGITGMLIAVVLLLSILAFLTYWAIKVQQEQATNPYK 47 (66)
T ss_pred eecchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 333455566666666666667777776655554444443
No 93
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=44.29 E-value=23 Score=32.63 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=9.9
Q ss_pred ceeeeCCCCCCCC
Q 027567 139 DATFLCPKCKSGR 151 (222)
Q Consensus 139 nATFlCp~C~~~~ 151 (222)
|+--.||+|...+
T Consensus 175 ~tlARCPHCrKvS 187 (256)
T PF09788_consen 175 NTLARCPHCRKVS 187 (256)
T ss_pred CccccCCCCceec
Confidence 3445899999876
No 94
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=44.14 E-value=29 Score=26.99 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q 027567 180 AIVLVAAYKYWQKKKRQQDQARFLKLFED 208 (222)
Q Consensus 180 ~~~~~~~yk~wqkkkRe~~qARflKLFEe 208 (222)
+++.++-...|+.=|+...|.|+.+|.+-
T Consensus 17 iiaIvvW~iv~ieYrk~~rqrkId~li~R 45 (81)
T PF00558_consen 17 IIAIVVWTIVYIEYRKIKRQRKIDRLIER 45 (81)
T ss_dssp HHHHHHHHHH------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34555566667777777777777776665
No 95
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=43.50 E-value=12 Score=29.46 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=7.7
Q ss_pred eeCCCCCCCC
Q 027567 142 FLCPKCKSGR 151 (222)
Q Consensus 142 FlCp~C~~~~ 151 (222)
+.||.|.+..
T Consensus 87 ~~CP~Cgs~~ 96 (115)
T TIGR00100 87 YRCPKCHGIM 96 (115)
T ss_pred ccCcCCcCCC
Confidence 5799998765
No 96
>PF13400 Tad: Putative Flp pilus-assembly TadE/G-like
Probab=42.96 E-value=88 Score=20.68 Aligned_cols=15 Identities=7% Similarity=-0.124 Sum_probs=7.4
Q ss_pred HHHHHHHHHhHHHHH
Q 027567 186 AYKYWQKKKRQQDQA 200 (222)
Q Consensus 186 ~yk~wqkkkRe~~qA 200 (222)
-+-.+...|++-|.+
T Consensus 23 d~~~~~~~r~~lq~a 37 (48)
T PF13400_consen 23 DVGRAYLARTRLQNA 37 (48)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555443
No 97
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=42.42 E-value=60 Score=22.79 Aligned_cols=15 Identities=13% Similarity=0.239 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHh
Q 027567 181 IVLVAAYKYWQKKKR 195 (222)
Q Consensus 181 ~~~~~~yk~wqkkkR 195 (222)
+.++...+.+.+++|
T Consensus 13 ~~~~~~~~~~~~~~~ 27 (121)
T PF02687_consen 13 FILFNIISSSIRERR 27 (121)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555555433
No 98
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=41.74 E-value=25 Score=30.10 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=7.9
Q ss_pred ccccccccccccccc
Q 027567 90 EFLGTKCKRCGLYEE 104 (222)
Q Consensus 90 ~~~~~KCKRCG~YEe 104 (222)
+.+.++|+==|.-+.
T Consensus 13 nv~~~~C~C~~Vv~p 27 (149)
T PF05434_consen 13 NVSQKDCNCLHVVLP 27 (149)
T ss_pred CcChhhCccceeECC
Confidence 455667764444433
No 99
>COG4640 Predicted membrane protein [Function unknown]
Probab=41.72 E-value=17 Score=35.83 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=7.3
Q ss_pred ceeeeCCCCCCCC
Q 027567 139 DATFLCPKCKSGR 151 (222)
Q Consensus 139 nATFlCp~C~~~~ 151 (222)
++.+ ||+|....
T Consensus 14 d~~q-C~qCG~~~ 25 (465)
T COG4640 14 DDVQ-CTQCGHKF 25 (465)
T ss_pred cccc-ccccCCcC
Confidence 3445 88887653
No 100
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=41.66 E-value=20 Score=30.78 Aligned_cols=26 Identities=8% Similarity=0.324 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhcc
Q 027567 182 VLVAAYKYWQKKKRQQDQARFLKLFED 208 (222)
Q Consensus 182 ~~~~~yk~wqkkkRe~~qARflKLFEe 208 (222)
+-.++=+||++ --.+||+||.++|.+
T Consensus 74 s~~vLG~~wr~-as~eQr~~F~~~F~~ 99 (211)
T PRK15117 74 GALVLGRYYKD-ATPAQREAYFAAFRE 99 (211)
T ss_pred HHHHhhhhhhh-CCHHHHHHHHHHHHH
Confidence 34456689976 778899999999975
No 101
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=41.56 E-value=45 Score=32.92 Aligned_cols=8 Identities=0% Similarity=0.430 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 027567 186 AYKYWQKK 193 (222)
Q Consensus 186 ~yk~wqkk 193 (222)
++-++++|
T Consensus 648 ~~~~~~~~ 655 (968)
T PLN00113 648 GFVFIRGR 655 (968)
T ss_pred HHHHHHhh
Confidence 33344444
No 102
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=40.87 E-value=52 Score=34.52 Aligned_cols=29 Identities=17% Similarity=0.602 Sum_probs=12.3
Q ss_pred ceEeehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 163 MHVAIIVLISLLASIVTAIVLVAAYKYWQKK 193 (222)
Q Consensus 163 ~~~~viii~~vl~s~~~~~~~~~~yk~wqkk 193 (222)
+-++|||++.+++.+++++++. +|+ |||.
T Consensus 390 t~~~~~~f~~if~iva~ii~~~-L~R-~rr~ 418 (807)
T KOG1094|consen 390 TAILIIIFVAIFLIVALIIALM-LWR-WRRL 418 (807)
T ss_pred ceehHHHHHHHHHHHHHHHHHH-HHH-HHHH
Confidence 3344455555554333333322 333 5544
No 103
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=40.62 E-value=51 Score=30.87 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=17.1
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027567 166 AIIVLISLLASIVTAIVLVAAYKYWQKKKR 195 (222)
Q Consensus 166 ~viii~~vl~s~~~~~~~~~~yk~wqkkkR 195 (222)
++|++++.++.+++.++++ +.+++-|+++
T Consensus 339 ~lIlvl~~llG~~lg~~~v-L~r~~~r~~~ 367 (377)
T PRK10381 339 ALIVILAALIGGMLACGFV-LLRHAMRSRK 367 (377)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 3677777777666665555 4555544443
No 104
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=40.32 E-value=84 Score=23.24 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=14.5
Q ss_pred HHHHHHHH------HHHHhHHHHHHHhh
Q 027567 183 LVAAYKYW------QKKKRQQDQARFLK 204 (222)
Q Consensus 183 ~~~~yk~w------qkkkRe~~qARflK 204 (222)
+++++.+| ||.+-+++--+.|+
T Consensus 18 li~~~~~~~~~~~~~k~~~~k~i~~yL~ 45 (85)
T PF11337_consen 18 LIIGIYYFFNGNPYQKHKAEKAIDWYLQ 45 (85)
T ss_pred HHHHHHHhhcCchhhHHHHHHHHHHHHH
Confidence 45566667 77777776666664
No 105
>PTZ00045 apical membrane antigen 1; Provisional
Probab=40.31 E-value=43 Score=34.22 Aligned_cols=40 Identities=18% Similarity=0.419 Sum_probs=17.8
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLKLF 206 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARflKLF 206 (222)
+|||+.+...+++++.+...|.+.+||.....+-|+..-.
T Consensus 516 ~i~iia~~~~~~~vl~~~~~~~~~k~~~~~~~ydk~~~~~ 555 (595)
T PTZ00045 516 LIIIIAATGAVVLVLLAYFSYRYYRKKGNKDKYDKMDEAE 555 (595)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhh
Confidence 3333333332333333444444445555555555655443
No 106
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=39.68 E-value=45 Score=26.94 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHH-----HhHHHHHHHhhhhccCcchhh
Q 027567 182 VLVAAYKYWQKK-----KRQQDQARFLKLFEDGDEIED 214 (222)
Q Consensus 182 ~~~~~yk~wqkk-----kRe~~qARflKLFEe~Dd~e~ 214 (222)
+++..|-||+.. |+++++.++-.|=++-++++.
T Consensus 89 ~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~ 126 (134)
T PF07047_consen 89 AGLIIYEYWRSARKEAKKEEELQERLEELEERIEELEE 126 (134)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334478888753 455555666665544444443
No 107
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=39.59 E-value=80 Score=26.42 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=9.8
Q ss_pred HHHHHHHhhhhccCcchhhhc
Q 027567 196 QQDQARFLKLFEDGDEIEDEL 216 (222)
Q Consensus 196 e~~qARflKLFEe~Dd~e~EL 216 (222)
++++.+|++ -.++.++|+-|
T Consensus 29 ~r~Y~~lm~-g~~~~~lE~~l 48 (151)
T PF14584_consen 29 KRRYDALMR-GKDGKNLEDLL 48 (151)
T ss_pred HHHHHHHhC-CCCcccHHHHH
Confidence 344445543 44555666543
No 108
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=39.50 E-value=61 Score=24.39 Aligned_cols=14 Identities=21% Similarity=0.864 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 027567 180 AIVLVAAYKYWQKK 193 (222)
Q Consensus 180 ~~~~~~~yk~wqkk 193 (222)
++...+.+-+|+++
T Consensus 17 ~~~~~~~~~~~~~~ 30 (148)
T PF12158_consen 17 VLLIGGIFLYWRRK 30 (148)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334445555543
No 109
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=39.40 E-value=28 Score=24.10 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 027567 181 IVLVAAYKYWQKKK 194 (222)
Q Consensus 181 ~~~~~~yk~wqkkk 194 (222)
++++++.-+.+|.+
T Consensus 25 m~~~~~~~F~~k~~ 38 (42)
T PF11346_consen 25 MGVFFIRYFIRKMK 38 (42)
T ss_pred HHHHHHHHHHHHHc
Confidence 33343333344443
No 110
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=39.23 E-value=6.5 Score=33.76 Aligned_cols=10 Identities=10% Similarity=0.554 Sum_probs=5.1
Q ss_pred HHHHHHHHHh
Q 027567 186 AYKYWQKKKR 195 (222)
Q Consensus 186 ~yk~wqkkkR 195 (222)
+|-++.|+||
T Consensus 70 vf~~c~r~kk 79 (154)
T PF04478_consen 70 VFIFCIRRKK 79 (154)
T ss_pred heeEEEeccc
Confidence 4555555555
No 111
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=39.07 E-value=22 Score=26.92 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 027567 180 AIVLVAAYKYWQKKK 194 (222)
Q Consensus 180 ~~~~~~~yk~wqkkk 194 (222)
+++..++|-+.++||
T Consensus 68 li~~~~G~g~y~~~k 82 (84)
T PF09716_consen 68 LIATALGYGYYKKKK 82 (84)
T ss_pred HHHHHHHHHHHhhcc
Confidence 333444555555554
No 112
>PF04882 Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin 3 (Pex3p), also known as Peroxisomal biogenesis factor 3, has been identified and characterised as a peroxisomal membrane protein in yeasts and mammals []. Two putative peroxisomal membrane-bound Pex3p homologues have also been found in Arabidopsis thaliana []. They possess a membrane peroxisomal targeting signal. Pex3p is an integral membrane protein of peroxisomes, exposing its N- and C-terminal parts to the cytosol []. Peroxin is involved in peroxisome biosynthesis and integrity; it assembles membrane vesicles before the matrix proteins are translocated. In humans, defects in PEX3 are the cause of peroxisome biogenesis disorders [], which include Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). These are peroxisomal disorders that are the result of proteins failing to be imported into the peroxisome.; GO: 0007031 peroxisome organization, 0005779 integral to peroxisomal membrane; PDB: 3MK4_A 3AJB_A.
Probab=39.01 E-value=17 Score=34.34 Aligned_cols=20 Identities=35% Similarity=0.250 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 027567 179 TAIVLVAAYKYWQKKKRQQD 198 (222)
Q Consensus 179 ~~~~~~~~yk~wqkkkRe~~ 198 (222)
++.+++++++|+++|-+|.|
T Consensus 21 v~g~~y~~~~y~~~kl~e~q 40 (432)
T PF04882_consen 21 VVGGGYLLYQYAQKKLREQQ 40 (432)
T ss_dssp -------------------H
T ss_pred cccccccccccccccccccc
Confidence 33455558999998854443
No 113
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=38.38 E-value=43 Score=27.55 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHh
Q 027567 183 LVAAYKYWQKKKR 195 (222)
Q Consensus 183 ~~~~yk~wqkkkR 195 (222)
++.+|++|.++-.
T Consensus 28 a~Lay~iw~~rm~ 40 (115)
T PF11014_consen 28 ALLAYMIWGKRMF 40 (115)
T ss_pred HHHHHHHHHHHhh
Confidence 3449999996543
No 114
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=38.28 E-value=95 Score=24.38 Aligned_cols=11 Identities=36% Similarity=0.631 Sum_probs=5.5
Q ss_pred HhHHHHHHHhh
Q 027567 194 KRQQDQARFLK 204 (222)
Q Consensus 194 kRe~~qARflK 204 (222)
.|++-+.|+|+
T Consensus 69 ~~~~~~~~~l~ 79 (84)
T PF06143_consen 69 ERQQREKTYLA 79 (84)
T ss_pred HHHHHHHHHHH
Confidence 34444555554
No 115
>PRK10847 hypothetical protein; Provisional
Probab=37.94 E-value=40 Score=28.69 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=9.5
Q ss_pred HHHHHHHHHhHHHHH
Q 027567 186 AYKYWQKKKRQQDQA 200 (222)
Q Consensus 186 ~yk~wqkkkRe~~qA 200 (222)
+..+|||++|.++.|
T Consensus 204 ~~~~~r~~~~~~~~~ 218 (219)
T PRK10847 204 VIEIWRHKRAAARAA 218 (219)
T ss_pred HHHHHHHHhhhhhcc
Confidence 456788777665543
No 116
>PRK00523 hypothetical protein; Provisional
Probab=37.94 E-value=54 Score=25.20 Aligned_cols=9 Identities=0% Similarity=0.073 Sum_probs=3.9
Q ss_pred ehhhHHHHH
Q 027567 167 IIVLISLLA 175 (222)
Q Consensus 167 viii~~vl~ 175 (222)
++|++.+++
T Consensus 6 l~I~l~i~~ 14 (72)
T PRK00523 6 LALGLGIPL 14 (72)
T ss_pred HHHHHHHHH
Confidence 344444443
No 117
>TIGR01708 typeII_sec_gspH general secretion pathway protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=37.80 E-value=76 Score=24.64 Aligned_cols=19 Identities=11% Similarity=-0.032 Sum_probs=7.4
Q ss_pred HHHHHHHH-HhHHHHHHHhh
Q 027567 186 AYKYWQKK-KRQQDQARFLK 204 (222)
Q Consensus 186 ~yk~wqkk-kRe~~qARflK 204 (222)
.+.-|+.+ +.+++..+|..
T Consensus 28 ~~~~~~~~~~~~~~a~~l~~ 47 (143)
T TIGR01708 28 SLVSHYGTKSLDQVAGRLAA 47 (143)
T ss_pred HhhhhhhHHHHHHHHHHHHH
Confidence 33443333 33333334433
No 118
>PF15345 TMEM51: Transmembrane protein 51
Probab=37.67 E-value=40 Score=30.78 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=6.6
Q ss_pred HHHHHHHHhHHHHH
Q 027567 187 YKYWQKKKRQQDQA 200 (222)
Q Consensus 187 yk~wqkkkRe~~qA 200 (222)
-+.=+||||+|+.+
T Consensus 78 L~IR~KRr~rq~~e 91 (233)
T PF15345_consen 78 LSIRDKRRRRQGEE 91 (233)
T ss_pred HHHHHHHHHhhccc
Confidence 34445555544433
No 119
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=37.65 E-value=14 Score=28.33 Aligned_cols=26 Identities=27% Similarity=0.795 Sum_probs=16.9
Q ss_pred cccccccccccc---ccccCCCCCCCCCc
Q 027567 89 TEFLGTKCKRCG---LYEEDTFNSDDVFD 114 (222)
Q Consensus 89 T~~~~~KCKRCG---~YEed~~~~DdvFD 114 (222)
..+....||+|| ||..++-+.+.++|
T Consensus 36 n~f~~itCk~CgYtEfY~a~~st~~nilD 64 (68)
T COG3478 36 NKFIVITCKNCGYTEFYSAKISTTGNILD 64 (68)
T ss_pred cEEEEEEeccCCchhheeccccccceeee
Confidence 456678899999 46666555444444
No 120
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=37.61 E-value=1e+02 Score=23.65 Aligned_cols=24 Identities=4% Similarity=0.093 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 171 ISLLASIVTAIVLVAAYKYWQKKK 194 (222)
Q Consensus 171 ~~vl~s~~~~~~~~~~yk~wqkkk 194 (222)
++..+.+++.+++..+-..||||+
T Consensus 20 WlA~~~tll~l~~l~v~sv~qrr~ 43 (67)
T COG3114 20 WLAVGMTLLPLAVLVVHSVLQRRA 43 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666777888999986
No 121
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=37.60 E-value=5.1 Score=33.26 Aligned_cols=14 Identities=0% Similarity=-0.164 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 027567 181 IVLVAAYKYWQKKK 194 (222)
Q Consensus 181 ~~~~~~yk~wqkkk 194 (222)
.++.++|-+|.+++
T Consensus 38 ~~g~g~~f~~~~~~ 51 (166)
T PRK12785 38 GGGGGGFFFFFSHG 51 (166)
T ss_pred hcchheEEEEEecC
Confidence 34455666676543
No 122
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=37.39 E-value=19 Score=28.44 Aligned_cols=8 Identities=38% Similarity=1.057 Sum_probs=6.3
Q ss_pred cccccccc
Q 027567 93 GTKCKRCG 100 (222)
Q Consensus 93 ~~KCKRCG 100 (222)
.-+|+.||
T Consensus 71 ~~~C~~Cg 78 (117)
T PRK00564 71 ELECKDCS 78 (117)
T ss_pred EEEhhhCC
Confidence 35799999
No 123
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=36.84 E-value=18 Score=30.00 Aligned_cols=10 Identities=40% Similarity=1.202 Sum_probs=5.4
Q ss_pred HHHHHHHHHh
Q 027567 186 AYKYWQKKKR 195 (222)
Q Consensus 186 ~yk~wqkkkR 195 (222)
++-+|.||+|
T Consensus 177 ~~~~~~R~~R 186 (189)
T PF14610_consen 177 GFFFWNRKKR 186 (189)
T ss_pred hhheeeccce
Confidence 4445656555
No 124
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=36.72 E-value=1.1e+02 Score=28.47 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=7.5
Q ss_pred HHHHHHHHHhHHHHHHH
Q 027567 186 AYKYWQKKKRQQDQARF 202 (222)
Q Consensus 186 ~yk~wqkkkRe~~qARf 202 (222)
++-||+.+.-.+.|+++
T Consensus 46 ~~~~~~~~q~~~~~~~~ 62 (372)
T PF04375_consen 46 GGWYWQQQQLQQLQQQL 62 (372)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445544443444443
No 125
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=36.48 E-value=95 Score=26.70 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhccCc
Q 027567 184 VAAYKYWQKKKRQQDQARFLKLFEDGD 210 (222)
Q Consensus 184 ~~~yk~wqkkkRe~~qARflKLFEe~D 210 (222)
+.+.|+|.-++......+|++-+.+..
T Consensus 30 viieR~~~~~~~~~~~~~~~~~~~~~~ 56 (215)
T TIGR02796 30 IIFQKFFIFRRARREAEEFEDRFWSGG 56 (215)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHcCC
Confidence 336777665554444455665544433
No 126
>PF11780 DUF3318: Protein of unknown function (DUF3318); InterPro: IPR021751 This is a bacterial family of uncharacterised proteins.
Probab=36.06 E-value=32 Score=28.69 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 027567 178 VTAIVLVAAYKYWQKKKRQQ 197 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe~ 197 (222)
...++...+|+.||+.|.+|
T Consensus 109 a~Gla~~~~~riwq~~~~~~ 128 (146)
T PF11780_consen 109 AGGLAAWAAYRIWQQNRSPQ 128 (146)
T ss_pred HHHHHHHHHHHHHHHccCcc
Confidence 45566777999999998733
No 127
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.04 E-value=47 Score=28.98 Aligned_cols=29 Identities=34% Similarity=0.634 Sum_probs=15.4
Q ss_pred ceEeehhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 163 MHVAIIVLISLLASIVTAIVLVAAYKYWQKKK 194 (222)
Q Consensus 163 ~~~~viii~~vl~s~~~~~~~~~~yk~wqkkk 194 (222)
++..+|+|+.++.+ ++.+.++|-||+-+|
T Consensus 4 k~~~~i~ii~vifl---ai~~s~~~~~~~s~~ 32 (161)
T COG5353 4 KHLIIIIIILVIFL---AIILSIALFFWKSMK 32 (161)
T ss_pred eEeeeehhHHHHHH---HHHHHHHHHHhHhcC
Confidence 44444555444432 222334777898776
No 128
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=35.87 E-value=16 Score=24.38 Aligned_cols=11 Identities=45% Similarity=1.129 Sum_probs=9.2
Q ss_pred ccccccccccc
Q 027567 91 FLGTKCKRCGL 101 (222)
Q Consensus 91 ~~~~KCKRCG~ 101 (222)
+...+|+.||+
T Consensus 11 ~~~~~C~~CgM 21 (41)
T PF13878_consen 11 FGATTCPTCGM 21 (41)
T ss_pred cCCcCCCCCCC
Confidence 55689999997
No 129
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=35.82 E-value=23 Score=29.30 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=9.7
Q ss_pred ceeeeCCCCCCCC
Q 027567 139 DATFLCPKCKSGR 151 (222)
Q Consensus 139 nATFlCp~C~~~~ 151 (222)
.-.+.||.|....
T Consensus 320 ~r~~~C~~cg~~~ 332 (364)
T COG0675 320 GRLFKCPRCGFVH 332 (364)
T ss_pred ceeEECCCCCCee
Confidence 4678899998753
No 130
>PF09402 MSC: Man1-Src1p-C-terminal domain; InterPro: IPR018996 This entry represents the Inner nuclear membrane proteins MAN1 (also known as LEM domain-containing protein 3) and LEM domain-containing protein 2 (or LEM protein 2). Emerin and MAN1 are LEM domain-containing integral membrane proteins of the vertebrate nuclear envelope []. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C-terminal nulceoplasmic region forms a DNA binding winged helix and binds to Smad []. LEM protein 2 is an essential protein involved in chromosome segregation and cell division, probably via its interaction with lmn-1, the main component of nuclear lamina. Has some overlapping function with emr-1.; GO: 0005639 integral to nuclear inner membrane; PDB: 2CH0_A.
Probab=35.39 E-value=8.2 Score=34.04 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=0.0
Q ss_pred cccCCCccccCceeeecC
Q 027567 64 KKILPDVKEKNTTYVFKG 81 (222)
Q Consensus 64 kt~LPDVk~~~~~YtF~G 81 (222)
..=-||-+...+.|++.|
T Consensus 67 ~~C~~~y~~~~~~l~~~g 84 (334)
T PF09402_consen 67 LECEPGYVLKPSPLSLFG 84 (334)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 333455556666666555
No 131
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=35.18 E-value=68 Score=29.62 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=15.8
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 166 AIIVLISLLASIVTAIVLVAAYKYWQKK 193 (222)
Q Consensus 166 ~viii~~vl~s~~~~~~~~~~yk~wqkk 193 (222)
++|+++++++.+++..+.+.+-..++++
T Consensus 295 ~lIlil~~~lG~~lg~~~vL~r~~~r~~ 322 (325)
T PRK15471 295 AITLVLAVLLGGMIGAGIVLGRNALRNY 322 (325)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677777777666655555433344333
No 132
>PLN03150 hypothetical protein; Provisional
Probab=34.69 E-value=34 Score=33.45 Aligned_cols=12 Identities=17% Similarity=0.833 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHh
Q 027567 184 VAAYKYWQKKKR 195 (222)
Q Consensus 184 ~~~yk~wqkkkR 195 (222)
+.++-+|+|||+
T Consensus 562 ~~~~~~~~~r~~ 573 (623)
T PLN03150 562 ICAMCWWKRRQN 573 (623)
T ss_pred HHHhhheeehhh
Confidence 345566766553
No 133
>PRK11387 S-methylmethionine transporter; Provisional
Probab=34.65 E-value=35 Score=31.32 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhHH-HHHH
Q 027567 180 AIVLVAAYKYWQKKKRQQ-DQAR 201 (222)
Q Consensus 180 ~~~~~~~yk~wqkkkRe~-~qAR 201 (222)
++..+..|++|+|+||.. |.||
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T PRK11387 445 VALCYGAYYLTQRLKRNMTQEAR 467 (471)
T ss_pred HHHHHHHHHHhccccccccHhhh
Confidence 445566899888766544 5555
No 134
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=34.61 E-value=65 Score=29.84 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 027567 168 IVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLK 204 (222)
Q Consensus 168 iii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARflK 204 (222)
||.|.|.|.++|++-+..-|+-=+|+|+..|+-.+|+
T Consensus 262 iiaIliIVLIMvIIYLILRYRRKKKmkKKlQYiKLL~ 298 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYRRKKKMKKKLQYIKLLK 298 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 4444444555666777778999999999999999886
No 135
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=34.39 E-value=92 Score=23.74 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhccCcchhh
Q 027567 182 VLVAAYKYWQKKKRQQDQARFLKLFEDGDEIED 214 (222)
Q Consensus 182 ~~~~~yk~wqkkkRe~~qARflKLFEe~Dd~e~ 214 (222)
++-++||+---..|.+.+|.|-|=+.-.+|-|.
T Consensus 28 ~~~~~~k~~~~~pRK~aYadFYknYD~~kdFer 60 (70)
T cd00927 28 GAAAAYKFLVNEPRKKAYADFYKTYDAMKDFER 60 (70)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHccChHHHHHH
Confidence 334466666666666789999998887777664
No 136
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=34.29 E-value=73 Score=28.59 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027567 171 ISLLASIVTAIVLVAAYKYWQKKKRQQDQA 200 (222)
Q Consensus 171 ~~vl~s~~~~~~~~~~yk~wqkkkRe~~qA 200 (222)
++++..+.+|++++ .|--|||-|-|++.-
T Consensus 201 Wv~l~iG~iIi~tL-tYvGwRKYrgek~~~ 229 (232)
T PF09577_consen 201 WVMLSIGGIIIATL-TYVGWRKYRGEKEKR 229 (232)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 33333333444433 788888887776643
No 137
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=34.08 E-value=14 Score=30.00 Aligned_cols=29 Identities=38% Similarity=0.817 Sum_probs=19.8
Q ss_pred ccccccccccccccccCCCCCCCCCcccccCCCCCCCC
Q 027567 89 TEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADN 126 (222)
Q Consensus 89 T~~~~~KCKRCG~YEed~~~~DdvFDEWElCpsDF~~~ 126 (222)
-.|.+.||+.||-+= |--=..||..++..
T Consensus 25 ~kl~g~kC~~CG~v~---------~PPr~~Cp~C~~~~ 53 (140)
T COG1545 25 GKLLGTKCKKCGRVY---------FPPRAYCPKCGSET 53 (140)
T ss_pred CcEEEEEcCCCCeEE---------cCCcccCCCCCCCC
Confidence 358899999999542 22234688888553
No 138
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=33.49 E-value=41 Score=34.27 Aligned_cols=34 Identities=24% Similarity=0.507 Sum_probs=20.6
Q ss_pred cCCccc-cccccccccccccccccccCCCCCCCCCccc
Q 027567 80 KGEESW-QPLTEFLGTKCKRCGLYEEDTFNSDDVFDEW 116 (222)
Q Consensus 80 ~GeESW-QPLT~~~~~KCKRCG~YEed~~~~DdvFDEW 116 (222)
.|.++| .+..+....+|.+||- ..-...||+|.|
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~g~---~~~re~Dv~Dtw 493 (805)
T PRK00390 459 DGTGSPLAKHPEWVNVTCPKCGK---PARRETDTMDTF 493 (805)
T ss_pred CCCCChhhhchhhhCCCccccCC---CceeCCcccccc
Confidence 354433 3333444468999973 233467999999
No 139
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=33.18 E-value=17 Score=25.75 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=21.0
Q ss_pred ccccccccccccccccCCCCCCCCCcccccCCCCCCCCC
Q 027567 89 TEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADND 127 (222)
Q Consensus 89 T~~~~~KCKRCG~YEed~~~~DdvFDEWElCpsDF~~~d 127 (222)
|--.-+||..||.|--.-= ..--=+-||--|+..+
T Consensus 7 TlRGirkCp~CGt~NG~R~----~~CKN~~C~~~~~~~~ 41 (44)
T PF14952_consen 7 TLRGIRKCPKCGTYNGTRG----LSCKNKSCPQVFNVLD 41 (44)
T ss_pred hHhccccCCcCcCccCccc----ccccCCccchhhhccc
Confidence 4455689999999975321 1122245777775544
No 140
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=32.85 E-value=70 Score=26.67 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhH
Q 027567 184 VAAYKYWQKKKRQ 196 (222)
Q Consensus 184 ~~~yk~wqkkkRe 196 (222)
+++.+++|+|+|.
T Consensus 21 ~AA~~~~krk~kK 33 (137)
T PF12868_consen 21 YAAHKYKKRKEKK 33 (137)
T ss_pred HHHHHHHHHHhhh
Confidence 4578899877544
No 141
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=32.83 E-value=58 Score=27.25 Aligned_cols=20 Identities=0% Similarity=0.154 Sum_probs=12.5
Q ss_pred ehhhHHHHHHHHHHHHHHHH
Q 027567 167 IIVLISLLASIVTAIVLVAA 186 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~ 186 (222)
+.|++++++||++++.+.+.
T Consensus 92 ~~Il~~ivvSTllvl~vtg~ 111 (141)
T PRK04125 92 VQIIGVIIVATILLLACTGL 111 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34666677777766666544
No 142
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=32.82 E-value=68 Score=29.05 Aligned_cols=9 Identities=11% Similarity=0.534 Sum_probs=4.1
Q ss_pred HHHHHHHhH
Q 027567 188 KYWQKKKRQ 196 (222)
Q Consensus 188 k~wqkkkRe 196 (222)
+.|+.++|+
T Consensus 73 ~~~~~~rr~ 81 (398)
T PRK10747 73 RGWFVGRKR 81 (398)
T ss_pred hHHHHHHHH
Confidence 355554333
No 143
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=32.79 E-value=15 Score=28.62 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=11.3
Q ss_pred CCCCCcccccCCC
Q 027567 109 SDDVFDEWEFCPG 121 (222)
Q Consensus 109 ~DdvFDEWElCps 121 (222)
.|-+|||||.||.
T Consensus 65 ~~~~~~eiEvcpk 77 (77)
T cd01818 65 YDLLYKEIEICPK 77 (77)
T ss_pred HHhhhheEEeccC
Confidence 6779999999994
No 144
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=32.78 E-value=34 Score=25.22 Aligned_cols=44 Identities=23% Similarity=0.530 Sum_probs=24.1
Q ss_pred cCCCccccCceee--ecCCccccccccccccccccccc---cccCCCCCCCCCc
Q 027567 66 ILPDVKEKNTTYV--FKGEESWQPLTEFLGTKCKRCGL---YEEDTFNSDDVFD 114 (222)
Q Consensus 66 ~LPDVk~~~~~Yt--F~GeESWQPLT~~~~~KCKRCG~---YEed~~~~DdvFD 114 (222)
..-.|+..+..++ |+-|+ + .+...-|++||. |..++=.--++||
T Consensus 12 e~~~v~~tgg~~skiFdvq~--~---~f~~v~C~~CGYTE~Y~~~~~~~~~i~D 60 (64)
T PF09855_consen 12 ESGEVRATGGGLSKIFDVQN--K---KFTTVSCTNCGYTEFYKAKTSNGSNILD 60 (64)
T ss_pred ecceEEccCCeeEEEEEecC--c---EEEEEECCCCCCEEEEeecCcccchhhh
Confidence 3334444444443 55555 2 355667999995 5544433335655
No 145
>PRK01908 electron transport complex protein RnfG; Validated
Probab=32.59 E-value=96 Score=26.80 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=11.8
Q ss_pred HHHhHHHHHHHhhhhccC
Q 027567 192 KKKRQQDQARFLKLFEDG 209 (222)
Q Consensus 192 kkkRe~~qARflKLFEe~ 209 (222)
..++++.++.+.+.+-++
T Consensus 32 ~~~~~~~~~~l~~vlp~~ 49 (205)
T PRK01908 32 EQAALQQKALLDQVIPAE 49 (205)
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 445555667778888764
No 146
>PRK08808 general secretion pathway protein J; Validated
Probab=32.49 E-value=1.1e+02 Score=26.81 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=6.7
Q ss_pred HHHHHHHhHHHHH
Q 027567 188 KYWQKKKRQQDQA 200 (222)
Q Consensus 188 k~wqkkkRe~~qA 200 (222)
.+|++.+|-+.++
T Consensus 34 ~~~~~~~r~~~~~ 46 (211)
T PRK08808 34 SASAVSQRGEAIA 46 (211)
T ss_pred HHHhhhHHHHHHH
Confidence 4666655444333
No 147
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=32.46 E-value=47 Score=29.61 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhHH
Q 027567 183 LVAAYKYWQKKKRQQ 197 (222)
Q Consensus 183 ~~~~yk~wqkkkRe~ 197 (222)
....+++|.||+.||
T Consensus 430 ~~~~~~~~~~~~~~~ 444 (452)
T PRK11273 430 LLIVVMIGEKRHHEE 444 (452)
T ss_pred HHHHHhccccchHHH
Confidence 344567787777665
No 148
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=32.28 E-value=88 Score=25.88 Aligned_cols=33 Identities=6% Similarity=0.144 Sum_probs=21.8
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQ 199 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~q 199 (222)
..|++++.+||++++++.+..-.|-.|+++..+
T Consensus 90 ~~Il~~~iiST~lv~~vtg~~~~~l~~~~~~~~ 122 (128)
T COG1380 90 LPILVVIIISTLLVLLVTGWVVQLLIRWQSKRH 122 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356777778888888888755555555544443
No 149
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=31.98 E-value=55 Score=22.70 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 027567 183 LVAAYKYWQKKKRQQDQA 200 (222)
Q Consensus 183 ~~~~yk~wqkkkRe~~qA 200 (222)
.+++|-||.+.|+.-|.|
T Consensus 25 giv~wa~~p~~k~~f~ea 42 (48)
T cd01324 25 GVVVWAFRPGRKKAFDEA 42 (48)
T ss_pred HHHHHHhCCCcchhHHHH
Confidence 344888995555444443
No 150
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=31.67 E-value=15 Score=33.25 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=22.6
Q ss_pred eeeCCCCCCCCcCCCCc--------------cCCCCc--eEeehhhHHHHHHHHHH
Q 027567 141 TFLCPKCKSGRTESDTH--------------VGRKGM--HVAIIVLISLLASIVTA 180 (222)
Q Consensus 141 TFlCp~C~~~~~~~~~~--------------~~~k~~--~~~viii~~vl~s~~~~ 180 (222)
...||.|...+.-|.++ -+.+.+ -|.+.|++++|++++++
T Consensus 38 ~vtCPTCqGtGrIP~eqe~qLVALIPy~DqRLKPrRTklyV~~sV~~CLl~~~L~i 93 (238)
T PF07092_consen 38 SVTCPTCQGTGRIPREQENQLVALIPYSDQRLKPRRTKLYVFLSVLLCLLLSGLVI 93 (238)
T ss_pred CCcCCCCcCCccCCccchhcEEEEEeccccccCCceeEEEeeHHHHHHHHHHHheE
Confidence 34899999887333322 233333 34446666666655544
No 151
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=31.50 E-value=55 Score=30.17 Aligned_cols=9 Identities=0% Similarity=0.036 Sum_probs=4.9
Q ss_pred CCceEEeec
Q 027567 127 DGKYIRKTK 135 (222)
Q Consensus 127 dG~Y~~fKe 135 (222)
+..|..|.+
T Consensus 182 ~~~~~~~~~ 190 (262)
T PF11884_consen 182 EDGWKVYPE 190 (262)
T ss_pred CCeEEEecH
Confidence 345666554
No 152
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=31.44 E-value=25 Score=21.88 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=8.7
Q ss_pred ccceeeeCCCCC
Q 027567 137 EFDATFLCPKCK 148 (222)
Q Consensus 137 eFnATFlCp~C~ 148 (222)
|--+.|.||+|-
T Consensus 12 ~~~v~f~CPnCG 23 (24)
T PF07754_consen 12 EQAVPFPCPNCG 23 (24)
T ss_pred ccCceEeCCCCC
Confidence 334678999994
No 153
>PRK11059 regulatory protein CsrD; Provisional
Probab=31.42 E-value=57 Score=31.33 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=26.3
Q ss_pred eEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 027567 164 HVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLK 204 (222)
Q Consensus 164 ~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARflK 204 (222)
+++++.++++++..++.++.++.+ ++.-+++.+++++-|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~l~ 50 (640)
T PRK11059 11 LSAFVTLLVALAMFVTLLGCTLSF-YQLTQEKQQHRVQALA 50 (640)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHH
Confidence 445555566666666666666677 4566777777777765
No 154
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=31.37 E-value=68 Score=24.29 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=22.1
Q ss_pred CCceEeehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 161 KGMHVAIIVLISLLASIVTAIVLVAAYKYWQKK 193 (222)
Q Consensus 161 k~~~~~viii~~vl~s~~~~~~~~~~yk~wqkk 193 (222)
++..+++..+.+.++..+..+..++.|+++.+|
T Consensus 52 ~kK~iiiS~i~s~lalli~~~~G~g~y~~~k~k 84 (84)
T PF09716_consen 52 NKKKIIISTIASGLALLIATALGYGYYKKKKKK 84 (84)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 444555555565666666667778899988765
No 155
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=30.78 E-value=36 Score=22.96 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 027567 178 VTAIVLVAAYKYWQKKKRQ 196 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe 196 (222)
+++.++|.+||.+|.+-+|
T Consensus 9 ~l~ga~f~~fKKyQ~~vnq 27 (33)
T PF10855_consen 9 ILGGAAFYGFKKYQNHVNQ 27 (33)
T ss_pred hhhhHHHHHHHHHHHHHhc
Confidence 3445667899999976554
No 156
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=30.58 E-value=17 Score=33.61 Aligned_cols=9 Identities=22% Similarity=0.530 Sum_probs=0.0
Q ss_pred HHHHHHhhh
Q 027567 197 QDQARFLKL 205 (222)
Q Consensus 197 ~~qARflKL 205 (222)
|+|+-|++=
T Consensus 181 ee~~~f~~K 189 (290)
T PF05454_consen 181 EEQKTFISK 189 (290)
T ss_dssp ---------
T ss_pred chhHHHHhc
Confidence 568888873
No 157
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=30.35 E-value=1e+02 Score=29.91 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 027567 178 VTAIVLVAAYKYWQKKKRQQDQARF 202 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe~~qARf 202 (222)
++++.+...|+..+.|||.+.++.-
T Consensus 448 ~~~~~v~~~~~~~~n~k~~~~~~~~ 472 (495)
T KOG2533|consen 448 IVLLLVILFYKERENKKRDKLLEED 472 (495)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 3334444477888888877766654
No 158
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=30.32 E-value=28 Score=27.18 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=9.1
Q ss_pred eehhhHHHHHHHHHHHHHH
Q 027567 166 AIIVLISLLASIVTAIVLV 184 (222)
Q Consensus 166 ~viii~~vl~s~~~~~~~~ 184 (222)
++++|..+||++++|..-+
T Consensus 5 ~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 5 AFLLLGLLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3444444555445444444
No 159
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=30.30 E-value=98 Score=23.50 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHh------HHHHHHHhhhhccCcch
Q 027567 181 IVLVAAYKYWQKKKR------QQDQARFLKLFEDGDEI 212 (222)
Q Consensus 181 ~~~~~~yk~wqkkkR------e~~qARflKLFEe~Dd~ 212 (222)
++..-++++..+|+| ++++.++-.|.+.-+-+
T Consensus 17 Vap~wl~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm 54 (75)
T TIGR02976 17 VAPLWLILHYRSKRKTAASLSTDDQALLQELYAKADRL 54 (75)
T ss_pred HHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 344446666665544 34555555555544333
No 160
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=30.13 E-value=17 Score=27.24 Aligned_cols=12 Identities=50% Similarity=1.176 Sum_probs=9.9
Q ss_pred cccccccccccc
Q 027567 90 EFLGTKCKRCGL 101 (222)
Q Consensus 90 ~~~~~KCKRCG~ 101 (222)
++...-|+|||-
T Consensus 7 eIV~t~CrRCGk 18 (60)
T PF10892_consen 7 EIVETPCRRCGK 18 (60)
T ss_pred EeeeehhhhhCc
Confidence 477889999994
No 161
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=29.86 E-value=63 Score=28.28 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=19.9
Q ss_pred cccccCCCCCCCCCCceE-EeeccccceeeeCCC
Q 027567 114 DEWEFCPGDFADNDGKYI-RKTKKEFDATFLCPK 146 (222)
Q Consensus 114 DEWElCpsDF~~~dG~Y~-~fKekeFnATFlCp~ 146 (222)
-.|+-|-+.-.-.+.... +-.-...|.|-.|+.
T Consensus 75 C~W~~C~~~~~Cv~~stV~k~tCtv~NtT~~~s~ 108 (186)
T PF05283_consen 75 CVWMECKGESYCVNNSTVVKETCTVKNTTESCSV 108 (186)
T ss_pred eEeeecCCCCcccCCcccccCCccccCccCCCCc
Confidence 469999877422233333 334456788888873
No 162
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=29.70 E-value=1.1e+02 Score=24.15 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=11.9
Q ss_pred HHHHHH-HHHhHHHHHHHhhhhccCc
Q 027567 186 AYKYWQ-KKKRQQDQARFLKLFEDGD 210 (222)
Q Consensus 186 ~yk~wq-kkkRe~~qARflKLFEe~D 210 (222)
-|-.|| .+||++++..+|.=..-||
T Consensus 23 yFli~RPQrKr~K~~~~ml~sL~kGD 48 (97)
T COG1862 23 YFLIIRPQRKRMKEHQELLNSLKKGD 48 (97)
T ss_pred HHhhcCHHHHHHHHHHHHHHhccCCC
Confidence 343443 3445555555555444444
No 163
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=29.46 E-value=31 Score=22.88 Aligned_cols=11 Identities=36% Similarity=0.990 Sum_probs=7.4
Q ss_pred ccccccc-cccC
Q 027567 95 KCKRCGL-YEED 105 (222)
Q Consensus 95 KCKRCG~-YEed 105 (222)
+|+.||- ||..
T Consensus 7 ~C~~Cg~~fe~~ 18 (52)
T TIGR02605 7 RCTACGHRFEVL 18 (52)
T ss_pred EeCCCCCEeEEE
Confidence 6777777 6654
No 164
>PF14851 FAM176: FAM176 family
Probab=29.36 E-value=20 Score=30.46 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=23.6
Q ss_pred eEeehhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027567 164 HVAIIVLISLLASIVTAIVLVAAYKYWQKKKR 195 (222)
Q Consensus 164 ~~~viii~~vl~s~~~~~~~~~~yk~wqkkkR 195 (222)
.+++-.+.||-+..++.|+++++---.|++||
T Consensus 21 ~~aLYFv~gVC~GLlLtLcllV~risc~~r~~ 52 (153)
T PF14851_consen 21 RFALYFVSGVCAGLLLTLCLLVIRISCRPRKR 52 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeecccc
Confidence 45667778888888888999988777854433
No 165
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=29.35 E-value=43 Score=28.53 Aligned_cols=25 Identities=16% Similarity=0.412 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhcc
Q 027567 183 LVAAYKYWQKKKRQQDQARFLKLFED 208 (222)
Q Consensus 183 ~~~~yk~wqkkkRe~~qARflKLFEe 208 (222)
-+++=++|++ --++||++|.++|.+
T Consensus 71 r~vLG~~W~~-~s~~Qr~~F~~~F~~ 95 (198)
T TIGR03481 71 RLTLGSSWTS-LSPEQRRRFIGAFRE 95 (198)
T ss_pred HHHhhhhhhh-CCHHHHHHHHHHHHH
Confidence 3445579977 667889999999975
No 166
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=29.34 E-value=1.2e+02 Score=25.03 Aligned_cols=13 Identities=31% Similarity=0.253 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 027567 181 IVLVAAYKYWQKK 193 (222)
Q Consensus 181 ~~~~~~yk~wqkk 193 (222)
+.+++.|++.|..
T Consensus 41 ~~~~G~y~~~~~~ 53 (130)
T PF06212_consen 41 IMAYGFYKVGQGN 53 (130)
T ss_pred HHHHHHHHHHHHH
Confidence 4445566666544
No 167
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=29.29 E-value=26 Score=27.55 Aligned_cols=10 Identities=40% Similarity=1.072 Sum_probs=7.2
Q ss_pred eeCCCCCCCC
Q 027567 142 FLCPKCKSGR 151 (222)
Q Consensus 142 FlCp~C~~~~ 151 (222)
+.||.|.+..
T Consensus 87 ~~CP~Cgs~~ 96 (113)
T PRK12380 87 AQCPHCHGER 96 (113)
T ss_pred ccCcCCCCCC
Confidence 3588888764
No 168
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=29.15 E-value=4.2 Score=28.93 Aligned_cols=32 Identities=25% Similarity=0.591 Sum_probs=24.4
Q ss_pred CCCCCCCCCCceEEeecccc-ceeeeCCCCCCC
Q 027567 119 CPGDFADNDGKYIRKTKKEF-DATFLCPKCKSG 150 (222)
Q Consensus 119 CpsDF~~~dG~Y~~fKekeF-nATFlCp~C~~~ 150 (222)
|.++|.=+-|....|.||.| |..-.||.|-..
T Consensus 10 Cg~~FvfTa~EQ~fy~eKgf~n~p~RC~~CR~~ 42 (49)
T PF13451_consen 10 CGAEFVFTAGEQKFYAEKGFDNEPKRCPSCRQA 42 (49)
T ss_pred CCCeEEEehhHHHHHHhcCCcCCCccCHHHHHH
Confidence 55566556788888999999 677799999654
No 169
>PLN02563 aminoacyl-tRNA ligase
Probab=29.15 E-value=51 Score=34.77 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=23.0
Q ss_pred eeeecCCcccccccc---ccccccccccccccCCCCCCCCCccc
Q 027567 76 TYVFKGEESWQPLTE---FLGTKCKRCGLYEEDTFNSDDVFDEW 116 (222)
Q Consensus 76 ~YtF~GeESWQPLT~---~~~~KCKRCG~YEed~~~~DdvFDEW 116 (222)
.|.+.|...| ||.. +...+|.+||- ..-..=|++|.|
T Consensus 547 ~~~~~~~g~~-pl~~~~~~~~~~~p~cg~---~~~RetDtmDtw 586 (963)
T PLN02563 547 DFTPTGTGEP-PLAKAVSWVNTVDPSSGK---PARRETNTMPQW 586 (963)
T ss_pred hcccCCCCCC-chhcchhhhcCcCcCCCC---CcEECCCcCCch
Confidence 3566776666 5653 34467999984 222234788888
No 170
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.14 E-value=11 Score=36.01 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 027567 178 VTAIVLVAAYKYWQKKKRQQDQARF 202 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe~~qARf 202 (222)
+++++++++|.+.|+ +||+++.||
T Consensus 327 ~~v~~ai~s~~i~q~-r~er~Rkrf 350 (351)
T KOG3839|consen 327 FLVGGAIFSIVIFQV-RQERNRKRF 350 (351)
T ss_pred HHHHhhheEEEEEee-hhhhhhccc
Confidence 344444445555443 344555555
No 171
>PHA00689 hypothetical protein
Probab=29.07 E-value=18 Score=26.84 Aligned_cols=24 Identities=33% Similarity=0.654 Sum_probs=13.7
Q ss_pred cccccccccccccCCCCCCCCCccccc
Q 027567 92 LGTKCKRCGLYEEDTFNSDDVFDEWEF 118 (222)
Q Consensus 92 ~~~KCKRCG~YEed~~~~DdvFDEWEl 118 (222)
....|||||-- -+.-.|---||-+
T Consensus 16 ravtckrcgkt---glrweddggewvl 39 (62)
T PHA00689 16 RAVTCKRCGKT---GLRWEDDGGEWVL 39 (62)
T ss_pred ceeehhhcccc---CceeecCCCcEEE
Confidence 35689999942 3332233456655
No 172
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=29.04 E-value=1.4e+02 Score=23.11 Aligned_cols=32 Identities=19% Similarity=0.439 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHh
Q 027567 172 SLLASIVTAIVLVAAYKYWQKKKR-----QQDQARFL 203 (222)
Q Consensus 172 ~vl~s~~~~~~~~~~yk~wqkkkR-----e~~qARfl 203 (222)
|++.++++++.+-+.+-.||.++| .|.||++-
T Consensus 12 gL~ls~i~V~~~~~~wi~~Ra~~~~DKT~~eRQa~Ly 48 (72)
T PF13268_consen 12 GLLLSSILVLLVSGIWILWRALRKKDKTAKERQAFLY 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 344444555555556667765443 45666653
No 173
>PF13584 BatD: Oxygen tolerance
Probab=28.96 E-value=73 Score=29.50 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=13.5
Q ss_pred CCCCCCceEEeeccccceee
Q 027567 123 FADNDGKYIRKTKKEFDATF 142 (222)
Q Consensus 123 F~~~dG~Y~~fKekeFnATF 142 (222)
|+...|+|..-.-....-+-
T Consensus 362 fdp~~~~y~~~~~~~~~i~V 381 (484)
T PF13584_consen 362 FDPQTGKYETATLPPITITV 381 (484)
T ss_pred EcCCCCeEEEEEcCCEEEEE
Confidence 66667999887766555444
No 174
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=28.35 E-value=1.9e+02 Score=19.45 Aligned_cols=30 Identities=7% Similarity=0.057 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027567 171 ISLLASIVTAIVLVAAYKYWQKKKRQQDQA 200 (222)
Q Consensus 171 ~~vl~s~~~~~~~~~~yk~wqkkkRe~~qA 200 (222)
+++++.+.+++....-.+-++|+-++++++
T Consensus 13 ~t~~~l~~l~~~~~~~~r~~~~~l~~~~~r 42 (46)
T PF04995_consen 13 VTALVLAGLIVWSLRRRRRLRKELKRLEAR 42 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455566666777777765554443
No 175
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=27.72 E-value=49 Score=25.57 Aligned_cols=11 Identities=36% Similarity=0.601 Sum_probs=4.8
Q ss_pred HHHHHHHHHhH
Q 027567 186 AYKYWQKKKRQ 196 (222)
Q Consensus 186 ~yk~wqkkkRe 196 (222)
+|-+-+||+++
T Consensus 72 g~y~~~kk~~~ 82 (85)
T TIGR01495 72 GYYYKKKNKDD 82 (85)
T ss_pred hhhhhcccccc
Confidence 44444444443
No 176
>PRK10574 putative major pilin subunit; Provisional
Probab=27.64 E-value=1.8e+02 Score=24.10 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhHHH
Q 027567 185 AAYKYWQKKKRQQD 198 (222)
Q Consensus 185 ~~yk~wqkkkRe~~ 198 (222)
-.|.-+++|-+.++
T Consensus 28 P~~~~~~~~a~~~~ 41 (146)
T PRK10574 28 PAYQNYLQKAALTD 41 (146)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555444333
No 177
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=27.57 E-value=72 Score=27.37 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=22.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYWQKKK 194 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~wqkkk 194 (222)
.|++++++..+++++|.|++|+...|+-
T Consensus 9 fI~~W~~vli~l~~IGGfFMFRKFLK~l 36 (141)
T PF11084_consen 9 FILFWVVVLIGLMAIGGFFMFRKFLKRL 36 (141)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhC
Confidence 4778888888889999999998766653
No 178
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=27.55 E-value=24 Score=24.42 Aligned_cols=11 Identities=45% Similarity=1.204 Sum_probs=8.8
Q ss_pred ccccccccccc
Q 027567 94 TKCKRCGLYEE 104 (222)
Q Consensus 94 ~KCKRCG~YEe 104 (222)
.||++||-|--
T Consensus 2 ~kC~~CG~~GH 12 (40)
T PF15288_consen 2 VKCKNCGAFGH 12 (40)
T ss_pred ccccccccccc
Confidence 58999998754
No 179
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=27.52 E-value=23 Score=26.44 Aligned_cols=10 Identities=50% Similarity=1.338 Sum_probs=7.8
Q ss_pred cccccccccc
Q 027567 94 TKCKRCGLYE 103 (222)
Q Consensus 94 ~KCKRCG~YE 103 (222)
+||.+||.|-
T Consensus 6 rkC~~cg~YT 15 (59)
T COG2260 6 RKCPKCGRYT 15 (59)
T ss_pred hcCcCCCcee
Confidence 6788888883
No 180
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=27.49 E-value=1.3e+02 Score=21.96 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027567 169 VLISLLASIVTAIVLVAAYKYWQKKKRQQDQAR 201 (222)
Q Consensus 169 ii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qAR 201 (222)
+++++++++..+.++++.||.--=+--|++.++
T Consensus 8 ~l~G~~~t~aa~a~av~~~kK~vi~Pie~ke~~ 40 (54)
T PF11240_consen 8 FLTGVAATLAAIAGAVFTFKKTVIEPIEEKEAK 40 (54)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 567777777777788888876543334444433
No 181
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=27.34 E-value=1.3e+02 Score=22.95 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=14.6
Q ss_pred HHHHHHHHHh------HHHHHHHhhhhccCcchh
Q 027567 186 AYKYWQKKKR------QQDQARFLKLFEDGDEIE 213 (222)
Q Consensus 186 ~yk~wqkkkR------e~~qARflKLFEe~Dd~e 213 (222)
++.+.+.|+| ++++.++-.|.+.-+-++
T Consensus 22 L~lHY~sk~~~~~gLs~~d~~~L~~L~~~a~rm~ 55 (75)
T PF06667_consen 22 LILHYRSKWKSSQGLSEEDEQRLQELYEQAERME 55 (75)
T ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4444444443 346666666665554444
No 182
>PF10721 DUF2514: Protein of unknown function (DUF2514); InterPro: IPR019659 This protein family is conserved in bacteria and some viruses. The function is not known.
Probab=27.16 E-value=63 Score=27.21 Aligned_cols=21 Identities=33% Similarity=0.288 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 027567 180 AIVLVAAYKYWQKKKRQQDQA 200 (222)
Q Consensus 180 ~~~~~~~yk~wqkkkRe~~qA 200 (222)
..|......-||+|..+++.+
T Consensus 20 ~~G~~~~~~~~~~~~a~r~~~ 40 (162)
T PF10721_consen 20 AHGYAVADAGWQAKWAERDAA 40 (162)
T ss_pred HhccHHHhhHHHHHHHHHHHH
Confidence 344444555799888777664
No 183
>PF05056 DUF674: Protein of unknown function (DUF674); InterPro: IPR007750 This family is found in Arabidopsis thaliana and contains uncharacterised proteins.
Probab=26.97 E-value=46 Score=32.65 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=29.9
Q ss_pred cccccccccccccccccccccCCCCCCCCCcccccCCCCCCCCCCceEEeeccccceeeeCCC
Q 027567 84 SWQPLTEFLGTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCPK 146 (222)
Q Consensus 84 SWQPLT~~~~~KCKRCG~YEed~~~~DdvFDEWElCpsDF~~~dG~Y~~fKekeFnATFlCp~ 146 (222)
+...++++.+.+| +||-+=...+..-+.-+ -..+.-.+.||-|++=+ ++||.=-+
T Consensus 127 c~~~~S~~~~~~C-~CG~~M~~ev~~~~~~~---~~s~~~~~~~GvFVk~~----~~tFiItD 181 (467)
T PF05056_consen 127 CRNYFSTFNNSRC-SCGKLMNKEVKLVDEEP---SASSAQGDEDGVFVKGD----TVTFIITD 181 (467)
T ss_pred cCcceeeeCCCcC-CCCCeeeeeecccCccc---cccccccCCCceEEeCc----eeEEEEEC
Confidence 4567789999999 89987443333111100 11112223477776543 67775333
No 184
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=26.78 E-value=70 Score=24.77 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=5.2
Q ss_pred eEeehhhHHHHH
Q 027567 164 HVAIIVLISLLA 175 (222)
Q Consensus 164 ~~~viii~~vl~ 175 (222)
+.++|+++++++
T Consensus 62 ~iili~lls~v~ 73 (101)
T PF06024_consen 62 NIILISLLSFVC 73 (101)
T ss_pred cchHHHHHHHHH
Confidence 333444444444
No 185
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=26.68 E-value=65 Score=26.84 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=24.9
Q ss_pred cCceeeecCCcccccccccc--ccccccccccccCCCCC
Q 027567 73 KNTTYVFKGEESWQPLTEFL--GTKCKRCGLYEEDTFNS 109 (222)
Q Consensus 73 ~~~~YtF~GeESWQPLT~~~--~~KCKRCG~YEed~~~~ 109 (222)
-+++|+ .+.++=+||+-.+ +-+|.+||..|+..+-+
T Consensus 145 lGvv~a-~~~~~g~~~~~~~~~~~~c~~~~~~e~rkva~ 182 (189)
T PRK09521 145 LGVIYA-MCSRCRTPLVKKGENELKCPNCGNIETRKLSS 182 (189)
T ss_pred ceEEEE-EccccCCceEECCCCEEECCCCCCEEeeccch
Confidence 467787 4444555554433 67999999999987743
No 186
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=26.67 E-value=2.1e+02 Score=22.14 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=11.0
Q ss_pred HHHHHHH-hHHHHHHHhhh
Q 027567 188 KYWQKKK-RQQDQARFLKL 205 (222)
Q Consensus 188 k~wqkkk-Re~~qARflKL 205 (222)
+-|.++| .-+++.+.++.
T Consensus 29 ~~~l~~k~~~e~~~~~~~~ 47 (108)
T PF09682_consen 29 IKYLKKKAGGEKLVKILEI 47 (108)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 4477777 55566666553
No 187
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.34 E-value=22 Score=32.22 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027567 169 VLISLLASIVTAIVLVAAYKYWQKKKRQ 196 (222)
Q Consensus 169 ii~~vl~s~~~~~~~~~~yk~wqkkkRe 196 (222)
+++++-+.+++..+.+++|.|||--+--
T Consensus 29 ~v~giailvVlGtag~~gy~yw~~s~as 56 (221)
T COG4649 29 AVIGIAILVVLGTAGYVGYTYWQTSRAS 56 (221)
T ss_pred HHHHHHHHHHhccccceeeehhcccccc
Confidence 3444444446667778899999976543
No 188
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=26.13 E-value=1.6e+02 Score=21.64 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 027567 178 VTAIVLVAAYKYW 190 (222)
Q Consensus 178 ~~~~~~~~~yk~w 190 (222)
++++++++.|...
T Consensus 19 ~~~~~~~~~~~l~ 31 (181)
T PF12729_consen 19 LLIVGIVGLYSLS 31 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 189
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=25.96 E-value=35 Score=26.86 Aligned_cols=10 Identities=30% Similarity=0.869 Sum_probs=7.3
Q ss_pred eeCCCCCCCC
Q 027567 142 FLCPKCKSGR 151 (222)
Q Consensus 142 FlCp~C~~~~ 151 (222)
+.||.|.+..
T Consensus 88 ~~CP~Cgs~~ 97 (114)
T PRK03681 88 RRCPQCHGDM 97 (114)
T ss_pred CcCcCcCCCC
Confidence 4688888665
No 190
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=25.96 E-value=46 Score=33.65 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q 027567 181 IVLVAAYKYWQKKK 194 (222)
Q Consensus 181 ~~~~~~yk~wqkkk 194 (222)
+.++.++-+||.||
T Consensus 575 il~ii~~Lh~~EKk 588 (606)
T KOG4550|consen 575 ILAIIGILHWQEKK 588 (606)
T ss_pred HHHHHhheehhhhh
Confidence 33445778999886
No 191
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=25.88 E-value=77 Score=23.49 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=17.7
Q ss_pred HHHHHHHHH-----HHHhHHHHHHHhhhhccCcchhhhc
Q 027567 183 LVAAYKYWQ-----KKKRQQDQARFLKLFEDGDEIEDEL 216 (222)
Q Consensus 183 ~~~~yk~wq-----kkkRe~~qARflKLFEe~Dd~e~EL 216 (222)
++++|-||- +||-++|..+.=+|== +|+++|++
T Consensus 12 vv~LYgY~yhLYrsek~G~rdYEKY~~LAL-~D~ldd~~ 49 (56)
T TIGR02736 12 VIFLYAYIYHLYRSQKKGERDYEKYANLAL-NDDLDDSL 49 (56)
T ss_pred HHHHHHHHHHhhhhhcccccCHHHHhhhhc-cccccchh
Confidence 344666662 3344466666655533 45666653
No 192
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.60 E-value=64 Score=29.26 Aligned_cols=14 Identities=43% Similarity=0.570 Sum_probs=8.4
Q ss_pred CCCceEeehhhHHH
Q 027567 160 RKGMHVAIIVLISL 173 (222)
Q Consensus 160 ~k~~~~~viii~~v 173 (222)
+|+++.++||+|++
T Consensus 221 ~~~l~~G~VVlIsl 234 (281)
T PF12768_consen 221 GKKLSRGFVVLISL 234 (281)
T ss_pred cccccceEEEEEeh
Confidence 46666666665554
No 193
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=25.48 E-value=35 Score=21.22 Aligned_cols=7 Identities=43% Similarity=1.488 Sum_probs=4.5
Q ss_pred ccccccc
Q 027567 95 KCKRCGL 101 (222)
Q Consensus 95 KCKRCG~ 101 (222)
+|..||-
T Consensus 7 ~C~~Cg~ 13 (41)
T smart00834 7 RCEDCGH 13 (41)
T ss_pred EcCCCCC
Confidence 5666665
No 194
>PHA03240 envelope glycoprotein M; Provisional
Probab=25.45 E-value=71 Score=29.59 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=20.0
Q ss_pred ccCCCCceEeehhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 157 HVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKKK 194 (222)
Q Consensus 157 ~~~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqkkk 194 (222)
+..+...|.+-|||+.|+.+++++++.=+--|.|+|=|
T Consensus 205 qr~~~aaH~~WIiilIIiIiIIIL~cfKiPQKl~dKw~ 242 (258)
T PHA03240 205 HRSKDAAHIAWIFIAIIIIIVIILFFFKIPQKLFDKWD 242 (258)
T ss_pred ecccccchHhHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 34444566666666666654444444333445665543
No 195
>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. In eukaryotes Nop10 is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10 is probably necessary for the stability of these RNPs [].; PDB: 2RFK_B 3LWR_B 2HVY_C 3HAX_C 3MQK_B 3LWO_B 3LWV_B 3HAY_C 3HJY_B 2EY4_E ....
Probab=25.45 E-value=21 Score=25.70 Aligned_cols=8 Identities=50% Similarity=1.381 Sum_probs=4.9
Q ss_pred cccccccc
Q 027567 95 KCKRCGLY 102 (222)
Q Consensus 95 KCKRCG~Y 102 (222)
+|.+||.|
T Consensus 7 ~c~~~~~Y 14 (53)
T PF04135_consen 7 KCPGCRVY 14 (53)
T ss_dssp ECTTTCEE
T ss_pred cCCCCCcE
Confidence 56666665
No 196
>PHA02047 phage lambda Rz1-like protein
Probab=25.42 E-value=1.4e+02 Score=24.38 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=3.8
Q ss_pred HHHH-HHHH
Q 027567 183 LVAA-YKYW 190 (222)
Q Consensus 183 ~~~~-yk~w 190 (222)
.|+. |+ |
T Consensus 21 ~~~~~~r-~ 28 (101)
T PHA02047 21 GFVQSYR-A 28 (101)
T ss_pred HHHHHHH-H
Confidence 4444 66 6
No 197
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=25.40 E-value=1.6e+02 Score=24.31 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=19.7
Q ss_pred CCCccCCCCceEeehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 154 SDTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYKYWQKK 193 (222)
Q Consensus 154 ~~~~~~~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqkk 193 (222)
|.++.+..|.-+---|++--|++++++++++++.-+--|+
T Consensus 5 pvs~~KPsGsL~PWeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 5 PVSEVKPSGSLKPWEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred cccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444222333333455566666766665555544
No 198
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=25.28 E-value=24 Score=33.96 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhH
Q 027567 184 VAAYKYWQKKKRQ 196 (222)
Q Consensus 184 ~~~yk~wqkkkRe 196 (222)
+.+++..+||+|+
T Consensus 374 vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 374 VCLRCRRRRRQRD 386 (439)
T ss_dssp -------------
T ss_pred eeeeehhcccccc
Confidence 3344444444444
No 199
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=25.25 E-value=43 Score=21.11 Aligned_cols=11 Identities=36% Similarity=1.065 Sum_probs=6.9
Q ss_pred eeeeCCCCCCC
Q 027567 140 ATFLCPKCKSG 150 (222)
Q Consensus 140 ATFlCp~C~~~ 150 (222)
+...||.|.+.
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 45567777654
No 200
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=25.09 E-value=1.4e+02 Score=23.69 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027567 168 IVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARF 202 (222)
Q Consensus 168 iii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARf 202 (222)
++++++....-++.|+...++.=.+-++++.|.|+
T Consensus 45 l~Li~iSlvLQv~vgilli~~~~~n~~~~~~~~~~ 79 (104)
T PF04923_consen 45 LTLISISLVLQVVVGILLIFISRYNINKPEKQRRA 79 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 44444444444445555555543433333334443
No 201
>PF04060 FeS: Putative Fe-S cluster; InterPro: IPR007202 These proteins contain a domain with four conserved cysteines that probably form an Fe-S redox cluster.; GO: 0051536 iron-sulfur cluster binding; PDB: 2YCL_A 4DJF_E 4DJD_C 4DJE_C.
Probab=25.05 E-value=27 Score=22.66 Aligned_cols=12 Identities=42% Similarity=0.955 Sum_probs=5.4
Q ss_pred cccccccccccc
Q 027567 91 FLGTKCKRCGLY 102 (222)
Q Consensus 91 ~~~~KCKRCG~Y 102 (222)
|++..|..||+=
T Consensus 2 LP~~nCg~CG~~ 13 (35)
T PF04060_consen 2 LPGTNCGACGYP 13 (35)
T ss_dssp S-S----TTSSS
T ss_pred CCCCcCCCCCCc
Confidence 678899999973
No 202
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=24.76 E-value=88 Score=29.13 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=23.6
Q ss_pred ceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 027567 163 MHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFL 203 (222)
Q Consensus 163 ~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARfl 203 (222)
...+++.++.+++ +++.+++-.|..+|.++|.+.++|-.
T Consensus 164 ~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~a~~~~~ 202 (414)
T PF06864_consen 164 RQLVLAAALVVLA--LAGGYGWWYWQAQQEEARRAAAAAAR 202 (414)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3344544444555 33466678999998887765555443
No 203
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=24.53 E-value=98 Score=25.26 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=10.7
Q ss_pred HHHHHHHHHhHHHHHHH
Q 027567 186 AYKYWQKKKRQQDQARF 202 (222)
Q Consensus 186 ~yk~wqkkkRe~~qARf 202 (222)
=-..|+|--.-=+|.||
T Consensus 39 KC~~~~k~~~SY~H~rL 55 (102)
T PF15176_consen 39 KCPVWYKYLASYRHHRL 55 (102)
T ss_pred HhHHHHHHHhccccccC
Confidence 45678876655555554
No 204
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=24.39 E-value=56 Score=25.28 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=19.3
Q ss_pred CCceEeehhhHHHHHHHHHHHHHHHHH
Q 027567 161 KGMHVAIIVLISLLASIVTAIVLVAAY 187 (222)
Q Consensus 161 k~~~~~viii~~vl~s~~~~~~~~~~y 187 (222)
.++..+.++++++++.+.+++.+.+.|
T Consensus 56 ~~~~~~~iili~lls~v~IlVily~Iy 82 (101)
T PF06024_consen 56 SKQNNGNIILISLLSFVCILVILYAIY 82 (101)
T ss_pred cccccccchHHHHHHHHHHHHHHhhhe
Confidence 456778899999888776666655554
No 205
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=24.31 E-value=34 Score=25.44 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=2.7
Q ss_pred HHHHHHHHhH
Q 027567 187 YKYWQKKKRQ 196 (222)
Q Consensus 187 yk~wqkkkRe 196 (222)
+-.|+|+++.
T Consensus 21 ~~~~rr~~~~ 30 (75)
T PF14575_consen 21 IVCFRRCKYS 30 (75)
T ss_dssp HCCCTT----
T ss_pred EEEEeeEcCC
Confidence 3344444433
No 206
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=24.31 E-value=1.5e+02 Score=22.29 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 027567 180 AIVLVAAYKYWQKK 193 (222)
Q Consensus 180 ~~~~~~~yk~wqkk 193 (222)
++|.|++-||-.|-
T Consensus 12 ~~Gff~ar~~~~k~ 25 (64)
T PF03672_consen 12 VIGFFIARKYMEKQ 25 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 35556566665553
No 207
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=24.21 E-value=1.1e+02 Score=23.65 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 027567 178 VTAIVLVAAYKYWQKKKRQQ 197 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe~ 197 (222)
...+.....++.|+||+++.
T Consensus 133 ~~~~~~~~~i~~~~~~~~~a 152 (205)
T PF07695_consen 133 IILLILIIIIYAWRKGNRPA 152 (205)
T ss_pred HHHHHHHHHHHHHHcCCccH
Confidence 33445556677776666554
No 208
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=24.20 E-value=29 Score=25.22 Aligned_cols=9 Identities=56% Similarity=1.637 Sum_probs=5.8
Q ss_pred ccccccccc
Q 027567 94 TKCKRCGLY 102 (222)
Q Consensus 94 ~KCKRCG~Y 102 (222)
++|.+||.|
T Consensus 6 r~C~~CgvY 14 (56)
T PRK13130 6 RKCPKCGVY 14 (56)
T ss_pred eECCCCCCE
Confidence 466666666
No 209
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=24.20 E-value=1.2e+02 Score=22.17 Aligned_cols=23 Identities=17% Similarity=0.615 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 027567 169 VLISLLASIVTAIVLVAAYKYWQ 191 (222)
Q Consensus 169 ii~~vl~s~~~~~~~~~~yk~wq 191 (222)
.++++++...+++.+-|+|=+|.
T Consensus 18 ~iv~~~al~~l~~~isGl~l~~p 40 (88)
T PF13703_consen 18 WIVGILALLLLLLLISGLYLWWP 40 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444444455555566666664
No 210
>PLN02938 phosphatidylserine decarboxylase
Probab=24.11 E-value=1.1e+02 Score=29.97 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027567 169 VLISLLASIVTAIVLVAAYKYWQKKKRQQDQA 200 (222)
Q Consensus 169 ii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qA 200 (222)
++-+.-+.+++++|++-+||...++|.|+++.
T Consensus 44 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 75 (428)
T PLN02938 44 LLPGATVATLLMLGALHARRLYEDKKVEEARE 75 (428)
T ss_pred ecCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556677788888999998888776654
No 211
>PRK01821 hypothetical protein; Provisional
Probab=24.11 E-value=74 Score=26.27 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=18.3
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYWQKKKRQ 196 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~wqkkkRe 196 (222)
+.+++++++||++++.+.+..-.|-.++|+
T Consensus 94 ~~il~~ivvST~lvl~vtg~~~~~l~~~~~ 123 (133)
T PRK01821 94 GPIVVSCIVSTLVVLLVVGWSSHYVHGERK 123 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345666677777777766555555555544
No 212
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=23.74 E-value=99 Score=23.33 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=22.8
Q ss_pred CceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 027567 162 GMHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLK 204 (222)
Q Consensus 162 ~~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARflK 204 (222)
.+++++++.+++.+ +..++.+.|-.|-++.-+...+++.+
T Consensus 51 ~~t~g~~~g~~~~~---~~~~l~~~Yv~~An~~~D~l~~~i~~ 90 (91)
T PF04341_consen 51 SLTLGIVLGLGQIV---FAWVLTWLYVRRANREFDPLARAIRE 90 (91)
T ss_pred CcCHHHHHHHHHHH---HHHHHHHHHHHHHccccCHHHHHHHh
Confidence 45655555555543 33444557777777766666666543
No 213
>PRK10557 hypothetical protein; Provisional
Probab=23.59 E-value=2.2e+02 Score=24.23 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 169 VLISLLASIVTAIVLVAAYKYWQKK 193 (222)
Q Consensus 169 ii~~vl~s~~~~~~~~~~yk~wqkk 193 (222)
++|++.++.++++++..+|-..|+-
T Consensus 14 lmIAm~Ig~illl~~~~~~~~~~~~ 38 (192)
T PRK10557 14 VLLAMAIGSVLLLGAARFLPALQRQ 38 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555544443
No 214
>PHA03164 hypothetical protein; Provisional
Probab=23.44 E-value=64 Score=25.68 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=23.1
Q ss_pred CCCCCCC---cCCCCccCCCCceEeehhhHHHHHHHHHHHHHHHHHH
Q 027567 145 PKCKSGR---TESDTHVGRKGMHVAIIVLISLLASIVTAIVLVAAYK 188 (222)
Q Consensus 145 p~C~~~~---~~~~~~~~~k~~~~~viii~~vl~s~~~~~~~~~~yk 188 (222)
-+|+++. +.+.+.-+...+....+|+.++..+.++.+. |++|-
T Consensus 35 veclpPpqisrtawnlwnnrRktftFlvLtgLaIamILfii-fvlyv 80 (88)
T PHA03164 35 VECLPPPQISRTAWNLWNNRRKTFTFLVLTGLAIAMILFII-FVLYV 80 (88)
T ss_pred ceecCCcccCchhHHHHHhhhheeehHHHHHHHHHHHHHHH-HHHHh
Confidence 3788875 3333444445555666777776654443332 33543
No 215
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=23.43 E-value=30 Score=22.50 Aligned_cols=11 Identities=64% Similarity=0.857 Sum_probs=8.0
Q ss_pred hhccCcchhhh
Q 027567 205 LFEDGDEIEDE 215 (222)
Q Consensus 205 LFEe~Dd~e~E 215 (222)
||..|||.||+
T Consensus 1 LFGSddEeed~ 11 (28)
T PF10587_consen 1 LFGSDDEEEDE 11 (28)
T ss_pred CCCCccccccH
Confidence 78888886654
No 216
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=23.35 E-value=75 Score=24.53 Aligned_cols=31 Identities=29% Similarity=0.316 Sum_probs=21.4
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027567 166 AIIVLISLLASIVTAIVLVAAYKYWQKKKRQ 196 (222)
Q Consensus 166 ~viii~~vl~s~~~~~~~~~~yk~wqkkkRe 196 (222)
+|++=+.+++..+..+|.|.++-.|+.+|++
T Consensus 47 Ai~lP~~lll~~~~~vg~f~g~vmik~~~kk 77 (78)
T PF07297_consen 47 AIILPIFLLLLGLSGVGTFLGYVMIKSKKKK 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4544455556667778889899999877643
No 217
>PRK07033 hypothetical protein; Provisional
Probab=23.31 E-value=2.2e+02 Score=27.36 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 027567 177 IVTAIVLVAAYKYWQKKKRQQDQARFLKL 205 (222)
Q Consensus 177 ~~~~~~~~~~yk~wqkkkRe~~qARflKL 205 (222)
++++++++++|++|-..+.+.-.+++..|
T Consensus 238 ~~ll~~~y~~~~~~L~~~a~~v~~~i~~l 266 (427)
T PRK07033 238 LLLALLLFIGLRWRLADRSDPVFAAIYAL 266 (427)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 35667788899999999998877777666
No 218
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=23.16 E-value=54 Score=23.28 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhHHH
Q 027567 184 VAAYKYWQKKKRQQD 198 (222)
Q Consensus 184 ~~~yk~wqkkkRe~~ 198 (222)
.++|-|||-|||.++
T Consensus 16 ~G~Yv~~~ark~~k~ 30 (47)
T PF15055_consen 16 AGAYVYAQARKRMKP 30 (47)
T ss_pred HHHHHHHHHhhcccC
Confidence 458999999998643
No 219
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=23.11 E-value=1.3e+02 Score=25.53 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 027567 184 VAAYKYWQKKK 194 (222)
Q Consensus 184 ~~~yk~wqkkk 194 (222)
.++|-+|-=+|
T Consensus 33 ~~~~~~~~~~~ 43 (159)
T COG1580 33 GAGYFFWFGSK 43 (159)
T ss_pred HHHHHHhhhcc
Confidence 33666676543
No 220
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.11 E-value=80 Score=26.60 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027567 176 SIVTAIVLVAAYKYWQKKK 194 (222)
Q Consensus 176 s~~~~~~~~~~yk~wqkkk 194 (222)
.+++++.+++++.||+||-
T Consensus 183 ~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 183 YIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445556666777777763
No 221
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=23.01 E-value=93 Score=24.80 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=15.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYWQKKKRQQD 198 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~ 198 (222)
+.+|++++..+++++. +..|.-=||+++..+
T Consensus 3 Ll~il~llLll~l~as-l~~wr~~~rq~k~~~ 33 (107)
T PF15330_consen 3 LLGILALLLLLSLAAS-LLAWRMKQRQKKAGQ 33 (107)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhhccccC
Confidence 4445555554444444 446655555555443
No 222
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.94 E-value=20 Score=34.39 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=23.7
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYWQKKKRQ 196 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~wqkkkRe 196 (222)
.|++.+|+++++.++.+++.|+-||.|.|.
T Consensus 319 ~ill~~vv~~v~~ai~s~~i~q~r~er~Rk 348 (351)
T KOG3839|consen 319 LILLFVVVFLVGGAIFSIVIFQVRQERNRK 348 (351)
T ss_pred HHHHHHHHHHHHhhheEEEEEeehhhhhhc
Confidence 466777777778888888899999977664
No 223
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=22.91 E-value=38 Score=29.99 Aligned_cols=54 Identities=15% Similarity=0.327 Sum_probs=34.2
Q ss_pred ccccccccc-----cccCCCCCCCCCcccccCCCCCCCCCCceEEeeccccceeeeCCCCCCC
Q 027567 93 GTKCKRCGL-----YEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCPKCKSG 150 (222)
Q Consensus 93 ~~KCKRCG~-----YEed~~~~DdvFDEWElCpsDF~~~dG~Y~~fKekeFnATFlCp~C~~~ 150 (222)
...|..|=- +-.++..-.+.+++|-.|=.++. .|...- ....|.+-.|..|...
T Consensus 80 ~snC~~Cl~~~~~~~~n~T~~F~~~~~~~~~Cf~~~~--~~~~~~--~~~~n~s~vC~~C~~~ 138 (237)
T PF09777_consen 80 KSNCDNCLTNNSYSLSNETIEFFKKLNQTLTCFENNQ--QGSTSS--SLSTNNSSVCKNCKTA 138 (237)
T ss_pred hCChhhhhccCCcccCchHHHHHHHHHHHHHHHHHhc--cCcccc--ccccCCCchhHHHHHH
Confidence 457888865 23334444467888999988873 233222 3444888899999765
No 224
>PRK07034 hypothetical protein; Provisional
Probab=22.81 E-value=1.9e+02 Score=29.23 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 027567 178 VTAIVLVAAYKYWQKKKRQQDQARFLKL 205 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe~~qARflKL 205 (222)
+++++++++|+||...+.+.=.+++..|
T Consensus 325 aLlallY~~ls~~Ld~qS~~l~a~i~al 352 (536)
T PRK07034 325 ALCLCAYGVTAWYLHQQSQQIRSNILTW 352 (536)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 5556788899999999988888887544
No 225
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=22.70 E-value=57 Score=26.79 Aligned_cols=12 Identities=75% Similarity=1.124 Sum_probs=8.1
Q ss_pred HHHHhhhhccCcchhhhc
Q 027567 199 QARFLKLFEDGDEIEDEL 216 (222)
Q Consensus 199 qARflKLFEe~Dd~e~EL 216 (222)
|.||| ||+|||.
T Consensus 83 QErFL------dEiddEa 94 (108)
T KOG4782|consen 83 QERFL------DEIDDEA 94 (108)
T ss_pred HHHHH------HHHHHHH
Confidence 67888 5666664
No 226
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.66 E-value=98 Score=25.36 Aligned_cols=33 Identities=21% Similarity=0.063 Sum_probs=15.0
Q ss_pred CCCceEeehhhHHHHHHHHHHHHHHHHHHHHHH
Q 027567 160 RKGMHVAIIVLISLLASIVTAIVLVAAYKYWQK 192 (222)
Q Consensus 160 ~k~~~~~viii~~vl~s~~~~~~~~~~yk~wqk 192 (222)
++++.+.+|+++.+++.++.+.|.++..+....
T Consensus 13 g~kkkl~ii~l~~l~l~~~g~gg~~~~~~~~~~ 45 (162)
T PRK07021 13 GKKRKLWLIILILLLLAAAAGAGYSWWLSKEQA 45 (162)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 333333344444444444444555545555443
No 227
>PRK09579 multidrug efflux protein; Reviewed
Probab=22.57 E-value=73 Score=33.27 Aligned_cols=8 Identities=0% Similarity=-0.035 Sum_probs=3.9
Q ss_pred CCCCcccc
Q 027567 110 DDVFDEWE 117 (222)
Q Consensus 110 DdvFDEWE 117 (222)
|++-++|.
T Consensus 622 ~~~~~~l~ 629 (1017)
T PRK09579 622 MELLPLVQ 629 (1017)
T ss_pred HHHHHHHH
Confidence 34555554
No 228
>PF10510 PIG-S: Phosphatidylinositol-glycan biosynthesis class S protein; InterPro: IPR019540 Phosphatidylinositol-glycan biosynthesis class S protein (PIG-S) is one of several key, core components of the glycosylphosphatidylinositol (GPI) trans-amidase complex that mediates GPI anchoring in the endoplasmic reticulum. Anchoring occurs when a protein's C-terminal GPI attachment signal peptide is replaced with a pre-assembled GPI []. Mammalian GPI transamidase consists of at least five components: Gaa1, Gpi8, PIG-S, PIG-T, and PIG-U, all five of which are required for its function. It is possible that Gaa1, Gpi8, PIG-S, and PIG-T form a tightly associated core that is only weakly associated with PIG-U. The exact function of PIG-S is unclear [].
Probab=22.47 E-value=1e+02 Score=29.68 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 027567 178 VTAIVLVAAYKYWQKKKRQ 196 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe 196 (222)
.++++++=.+|.|+|||||
T Consensus 499 pl~~~~~~~~k~~~~~rk~ 517 (517)
T PF10510_consen 499 PLLLGLLKELKEWRKRRKE 517 (517)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 4445555566666666654
No 229
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=22.46 E-value=1.3e+02 Score=21.67 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=9.8
Q ss_pred ehhhHHHHHHHHHHHHHH
Q 027567 167 IIVLISLLASIVTAIVLV 184 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~ 184 (222)
+++++++++..++.++++
T Consensus 60 lil~l~~~~Gl~lgi~~~ 77 (82)
T PF13807_consen 60 LILALGLFLGLILGIGLA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666665555544443
No 230
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=22.17 E-value=3.1e+02 Score=27.53 Aligned_cols=11 Identities=9% Similarity=0.492 Sum_probs=7.1
Q ss_pred EEeeeeeeeee
Q 027567 35 VTLDSIKIYKT 45 (222)
Q Consensus 35 VTL~Si~IF~T 45 (222)
..++.+++|++
T Consensus 163 a~V~~v~vY~~ 173 (656)
T PRK06975 163 AEVELVEAYRR 173 (656)
T ss_pred CEEEEEeEEEe
Confidence 55666777764
No 231
>PRK08388 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=22.17 E-value=1.3e+02 Score=24.09 Aligned_cols=30 Identities=7% Similarity=0.194 Sum_probs=18.7
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027567 166 AIIVLISLLASIVTAIVLVAAYKYWQKKKR 195 (222)
Q Consensus 166 ~viii~~vl~s~~~~~~~~~~yk~wqkkkR 195 (222)
++++.+-|...+..++++..+++.+|+++-
T Consensus 79 alvLTaIVI~~a~~A~~Lal~i~~yr~~gt 108 (119)
T PRK08388 79 ALVLTSIVIGVCVLSLAMALTINAYRHYGT 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444444444566777778999988765
No 232
>PF04159 NB: NB glycoprotein; InterPro: IPR007288 The NB glycoprotein is found in Influenza type B virus. Its function is unknown.; GO: 0016021 integral to membrane
Probab=21.95 E-value=67 Score=26.01 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=10.6
Q ss_pred ceeeeCCCCCCCC
Q 027567 139 DATFLCPKCKSGR 151 (222)
Q Consensus 139 nATFlCp~C~~~~ 151 (222)
||||-|++=+.-+
T Consensus 3 naTfNytNvNpI~ 15 (100)
T PF04159_consen 3 NATFNYTNVNPIS 15 (100)
T ss_pred ccccccccccccc
Confidence 7999998877665
No 233
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=21.95 E-value=83 Score=19.08 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 027567 186 AYKYWQKKK 194 (222)
Q Consensus 186 ~yk~wqkkk 194 (222)
++-+++|||
T Consensus 25 ~~~~~~rk~ 33 (34)
T TIGR01167 25 GLLLRKRKK 33 (34)
T ss_pred HHHheeccc
Confidence 344444444
No 234
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=21.89 E-value=55 Score=23.01 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027567 170 LISLLASIVTAIVLVAAYK 188 (222)
Q Consensus 170 i~~vl~s~~~~~~~~~~yk 188 (222)
++.+++..++++|+..+|.
T Consensus 3 ~V~lL~~~~l~iGlmIGY~ 21 (47)
T PF11772_consen 3 LVLLLAILALAIGLMIGYG 21 (47)
T ss_pred eHHHHHHHHHHHHHHeeee
Confidence 3444455567777777774
No 235
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=21.67 E-value=1.6e+02 Score=26.82 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 027567 168 IVLISLLASIVTAIVLVAAYKYWQK 192 (222)
Q Consensus 168 iii~~vl~s~~~~~~~~~~yk~wqk 192 (222)
+++++++++.++.++++++.-+..+
T Consensus 399 ~l~~~~~~Gl~lg~~~~~l~e~ld~ 423 (444)
T TIGR03017 399 NLVLSIFLGMLLGIGFAFLAELMDR 423 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444444444444444433
No 236
>PF14719 PID_2: Phosphotyrosine interaction domain (PTB/PID)
Probab=21.65 E-value=1.5e+02 Score=25.76 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 027567 184 VAAYKYWQKKKRQQDQARF 202 (222)
Q Consensus 184 ~~~yk~wqkkkRe~~qARf 202 (222)
-.+|--|||.||+.|++|+
T Consensus 120 ~~Af~~~kr~k~~~~~~~l 138 (182)
T PF14719_consen 120 RSAFQEFKRDKRSRQNARL 138 (182)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3478999999999999998
No 237
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=21.59 E-value=57 Score=25.44 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 027567 178 VTAIVLVAAYKYWQKKKRQQDQARFLK 204 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe~~qARflK 204 (222)
++.++.+++|-+.|-|||..-|.||-|
T Consensus 51 ~~G~~Fi~GfI~~RDRKrnkV~pRF~k 77 (77)
T PF11118_consen 51 AIGVGFIAGFILHRDRKRNKVQPRFRK 77 (77)
T ss_pred HHHHHHHHhHhheeeccccccchhhcC
Confidence 445667788999999999999999865
No 238
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=21.58 E-value=3.5e+02 Score=20.19 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=10.2
Q ss_pred HHHHHHHhhhhccC
Q 027567 196 QQDQARFLKLFEDG 209 (222)
Q Consensus 196 e~~qARflKLFEe~ 209 (222)
||.-.|.+.|.|.+
T Consensus 45 eqKLDrIIeLLEK~ 58 (58)
T PF13314_consen 45 EQKLDRIIELLEKD 58 (58)
T ss_pred HHHHHHHHHHHccC
Confidence 45567889988764
No 239
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=21.48 E-value=72 Score=22.18 Aligned_cols=11 Identities=27% Similarity=0.981 Sum_probs=6.2
Q ss_pred eeeeCCCCCCC
Q 027567 140 ATFLCPKCKSG 150 (222)
Q Consensus 140 ATFlCp~C~~~ 150 (222)
.++.||.|.+.
T Consensus 33 ~~w~CP~C~a~ 43 (47)
T PF00301_consen 33 DDWVCPVCGAP 43 (47)
T ss_dssp TT-B-TTTSSB
T ss_pred CCCcCcCCCCc
Confidence 34578988764
No 240
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=21.15 E-value=1.7e+02 Score=26.72 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=17.7
Q ss_pred ccccCCCCCCCCCcccccCCCCCCCCCCceEEee
Q 027567 101 LYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKT 134 (222)
Q Consensus 101 ~YEed~~~~DdvFDEWElCpsDF~~~dG~Y~~fK 134 (222)
.|+=...-.|...+-+++|-.-+.--..-|.|+.
T Consensus 176 ~~tV~t~i~~~~~yv~~~Ct~~~ikvH~i~l~~Q 209 (238)
T PF07092_consen 176 NYTVKTTIGDENSYVYKYCTWPKIKVHNIVLHMQ 209 (238)
T ss_pred EEEeeEEecCcchhHhHhhcCccceEEEEEEEEE
Confidence 3443333345555568888765533344455543
No 241
>COG0333 RpmF Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=21.15 E-value=36 Score=24.89 Aligned_cols=17 Identities=24% Similarity=0.679 Sum_probs=12.7
Q ss_pred ccccccccccccccCCC
Q 027567 91 FLGTKCKRCGLYEEDTF 107 (222)
Q Consensus 91 ~~~~KCKRCG~YEed~~ 107 (222)
++..-|+.||+|....+
T Consensus 38 l~Hrvc~~cg~Y~g~~v 54 (57)
T COG0333 38 LPHRVCLKCGYYKGRQV 54 (57)
T ss_pred cCceEcCCCCCccCeEe
Confidence 56677999999987543
No 242
>COG4968 PilE Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.84 E-value=2.6e+02 Score=23.88 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=11.3
Q ss_pred HHHHHHhHHHHHHHhh
Q 027567 189 YWQKKKRQQDQARFLK 204 (222)
Q Consensus 189 ~wqkkkRe~~qARflK 204 (222)
|-+|-+|-|-+|-+++
T Consensus 34 yv~rs~R~~a~A~L~~ 49 (139)
T COG4968 34 YVLRSRRSAAKAALLE 49 (139)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4457788888887765
No 243
>PF14149 YhfH: YhfH-like protein
Probab=20.71 E-value=33 Score=23.44 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=11.2
Q ss_pred ccccccccccccc
Q 027567 89 TEFLGTKCKRCGL 101 (222)
Q Consensus 89 T~~~~~KCKRCG~ 101 (222)
.+|+.|+|-.||=
T Consensus 9 rnLp~K~C~~CG~ 21 (37)
T PF14149_consen 9 RNLPPKKCTECGK 21 (37)
T ss_pred HhCCCcccHHHHH
Confidence 4789999999994
No 244
>PRK10580 proY putative proline-specific permease; Provisional
Probab=20.67 E-value=70 Score=29.23 Aligned_cols=19 Identities=16% Similarity=0.379 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 027567 179 TAIVLVAAYKYWQKKKRQQ 197 (222)
Q Consensus 179 ~~~~~~~~yk~wqkkkRe~ 197 (222)
+++.++++|+.++|.+||.
T Consensus 435 ~~~~~~~~y~~~~~~~~~~ 453 (457)
T PRK10580 435 WIVLLLIGWMFKRRHDRQL 453 (457)
T ss_pred HHHHHHHHHHHHhcccCCc
Confidence 3445566899987655553
No 245
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.66 E-value=1.3e+02 Score=28.50 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=10.4
Q ss_pred ccccccccc------cccccc-cccc
Q 027567 83 ESWQPLTEF------LGTKCK-RCGL 101 (222)
Q Consensus 83 ESWQPLT~~------~~~KCK-RCG~ 101 (222)
+.=||..++ .+.||| +|+-
T Consensus 77 qT~~~f~e~~e~~~k~~~K~k~~~d~ 102 (295)
T TIGR01478 77 ETHDPYEQLQELVEKNRTKSTGGNGA 102 (295)
T ss_pred hhcchHHHHHHHHHhcCCcccccCCc
Confidence 344555544 356787 4654
No 246
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=20.48 E-value=86 Score=22.80 Aligned_cols=13 Identities=38% Similarity=0.946 Sum_probs=9.5
Q ss_pred HHHHHHHhHHHHH
Q 027567 188 KYWQKKKRQQDQA 200 (222)
Q Consensus 188 k~wqkkkRe~~qA 200 (222)
.|||||+.|.+.+
T Consensus 7 eyW~~Ra~eA~~~ 19 (56)
T PF04431_consen 7 EYWQKRAEEARKA 19 (56)
T ss_pred HHHHHHHHHHHHH
Confidence 5899988766544
No 247
>PHA00626 hypothetical protein
Probab=20.40 E-value=38 Score=25.33 Aligned_cols=9 Identities=33% Similarity=0.796 Sum_probs=7.5
Q ss_pred ccccccccc
Q 027567 94 TKCKRCGLY 102 (222)
Q Consensus 94 ~KCKRCG~Y 102 (222)
-+||+||+.
T Consensus 24 YkCkdCGY~ 32 (59)
T PHA00626 24 YVCCDCGYN 32 (59)
T ss_pred eEcCCCCCe
Confidence 489999985
No 248
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=20.33 E-value=31 Score=27.35 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=20.0
Q ss_pred ccccccccccccccCCCC--C--CCCCccc
Q 027567 91 FLGTKCKRCGLYEEDTFN--S--DDVFDEW 116 (222)
Q Consensus 91 ~~~~KCKRCG~YEed~~~--~--DdvFDEW 116 (222)
.+...|..||+|-...++ + =||+.+|
T Consensus 40 ~~h~~C~~CG~y~~~~V~~l~epIDVY~~w 69 (99)
T PRK14892 40 IAIITCGNCGLYTEFEVPSVYDEVDVYNKF 69 (99)
T ss_pred cceEECCCCCCccCEECCccccchhhHHHH
Confidence 567899999999887664 2 2677777
No 249
>PRK08126 hypothetical protein; Provisional
Probab=20.18 E-value=2.8e+02 Score=26.79 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 027567 178 VTAIVLVAAYKYWQKKKRQQDQARFLKL 205 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe~~qARflKL 205 (222)
++++++|+.|+||-..+.++-++++..|
T Consensus 254 l~l~~~y~~~~~~L~~~s~~v~~qi~~L 281 (432)
T PRK08126 254 LILLGLFGWYKYRLLTRSADVQQRIAAI 281 (432)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 5667788899999888887776666655
No 250
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=20.09 E-value=1.3e+02 Score=20.39 Aligned_cols=8 Identities=13% Similarity=0.380 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q 027567 186 AYKYWQKK 193 (222)
Q Consensus 186 ~yk~wqkk 193 (222)
.+.||++-
T Consensus 15 I~dyfr~~ 22 (35)
T PF08763_consen 15 IQDYFRQF 22 (35)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555543
Done!