Query 027567
Match_columns 222
No_of_seqs 33 out of 35
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 20:07:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 90.3 0.51 1.7E-05 34.6 5.3 39 164-202 9-47 (79)
2 2l2t_A Receptor tyrosine-prote 89.4 0.1 3.4E-06 35.4 0.8 15 184-198 28-42 (44)
3 2ks1_B Epidermal growth factor 87.9 0.22 7.6E-06 33.5 1.7 32 163-197 11-42 (44)
4 2k1k_A Ephrin type-A receptor 76.8 1.3 4.5E-05 28.7 2.0 8 186-193 31-38 (38)
5 1s7q_A H-2KB, H-2 class I hist 74.4 0.63 2.2E-05 40.6 0.0 13 93-105 200-212 (348)
6 3qf7_D MRE11; ABC-ATPase, ATPa 73.4 0.83 2.8E-05 31.8 0.4 24 184-208 10-33 (50)
7 2jwa_A Receptor tyrosine-prote 70.9 3.3 0.00011 28.0 2.9 9 187-195 32-40 (44)
8 2lx0_A Membrane fusion protein 68.9 2.6 9E-05 26.9 2.0 25 169-193 8-32 (32)
9 1v54_I STA, cytochrome C oxida 60.6 9.1 0.00031 28.0 3.8 36 179-214 27-62 (73)
10 1pft_A TFIIB, PFTFIIBN; N-term 55.9 10 0.00035 24.4 3.1 39 66-117 7-46 (50)
11 2knc_B Integrin beta-3; transm 55.1 29 0.001 25.2 5.7 41 161-201 9-55 (79)
12 3a43_A HYPD, hydrogenase nicke 54.9 3.6 0.00012 32.2 0.8 48 93-151 70-117 (139)
13 1oqw_A Fimbrial protein; type 54.0 27 0.00091 26.3 5.6 20 184-203 21-40 (144)
14 3o9x_A Uncharacterized HTH-typ 53.7 3.1 0.00011 30.3 0.3 32 70-103 15-46 (133)
15 2l6w_A Beta-type platelet-deri 56.8 3.1 0.00011 27.8 0.0 19 178-196 20-38 (39)
16 2j5l_A Apical membrane antigen 48.8 3.6 0.00012 40.1 0.0 33 178-210 523-555 (581)
17 3ga8_A HTH-type transcriptiona 47.6 4.5 0.00015 28.3 0.3 27 73-101 18-44 (78)
18 2hi2_A Fimbrial protein; type 46.6 21 0.00073 27.0 4.0 19 186-204 23-41 (158)
19 3sok_A Fimbrial protein; pilus 46.5 41 0.0014 25.7 5.7 14 186-199 23-36 (151)
20 2k21_A Potassium voltage-gated 40.4 22 0.00077 29.1 3.4 29 167-197 54-82 (138)
21 2rdd_B UPF0092 membrane protei 40.2 33 0.0011 21.4 3.5 10 193-202 25-34 (37)
22 3sok_A Fimbrial protein; pilus 39.4 34 0.0012 26.2 4.2 36 167-204 9-44 (151)
23 1s24_A Rubredoxin 2; electron 39.4 23 0.00079 26.6 3.1 14 91-104 33-47 (87)
24 2k1a_A Integrin alpha-IIB; sin 38.5 29 0.00098 23.0 3.1 21 168-188 12-33 (42)
25 2knc_A Integrin alpha-IIB; tra 37.7 25 0.00085 24.5 2.8 21 168-188 14-35 (54)
26 2ctu_A Zinc finger protein 483 36.4 12 0.00041 22.9 1.0 31 117-147 43-73 (73)
27 3mjh_B Early endosome antigen 35.8 13 0.00046 23.6 1.1 9 142-150 6-14 (34)
28 1oqw_A Fimbrial protein; type 34.7 36 0.0012 25.5 3.6 35 167-203 9-43 (144)
29 2l2t_A Receptor tyrosine-prote 33.1 11 0.00037 25.3 0.4 30 164-193 11-40 (44)
30 6rxn_A Rubredoxin; electron tr 32.4 26 0.0009 23.3 2.2 10 94-103 5-15 (46)
31 4b19_A PEPA1; toxin, toxin apo 32.2 9.6 0.00033 24.2 0.0 17 179-195 12-28 (30)
32 1cd1_A CD1, MCD1D.1; immunolog 31.3 10 0.00035 32.1 0.0 12 94-105 203-214 (315)
33 1crb_A Cellular retinol bindin 31.0 29 0.001 26.6 2.6 57 51-107 36-93 (134)
34 2k9j_B Integrin beta-3; transm 30.8 50 0.0017 21.6 3.3 18 176-193 20-37 (43)
35 1pi7_A VPU protein, U ORF prot 30.2 65 0.0022 20.8 3.7 11 186-196 25-35 (36)
36 2l8s_A Integrin alpha-1; trans 28.1 42 0.0014 23.5 2.7 21 168-188 11-32 (54)
37 1q55_A EP-cadherin, C-cadherin 27.5 13 0.00044 36.3 0.0 8 168-175 709-716 (880)
38 1fdq_A Fatty acid-binding prot 27.4 37 0.0013 25.9 2.5 56 51-108 36-92 (131)
39 2rcq_A CRBP-II, retinol-bindin 27.2 32 0.0011 26.8 2.2 59 50-108 39-98 (141)
40 1b56_A Fatty acid binding prot 27.0 32 0.0011 26.4 2.2 55 51-107 39-94 (135)
41 2apo_B Ribosome biogenesis pro 26.9 15 0.00051 26.0 0.2 10 94-103 7-16 (60)
42 2aus_D NOP10, ribosome biogene 26.4 15 0.00052 26.0 0.2 10 94-103 6-15 (60)
43 1p6p_A Fatty acid-binding prot 26.1 31 0.0011 26.2 1.9 56 50-107 33-89 (125)
44 2a0a_A DER F 13; beta barrel, 25.5 56 0.0019 24.9 3.3 53 50-104 35-88 (131)
45 2klu_A T-cell surface glycopro 22.9 15 0.0005 27.2 -0.4 26 181-206 26-51 (70)
46 3bxl_B CAM, voltage-dependent 22.5 63 0.0022 19.9 2.4 18 182-199 4-21 (26)
47 1mvg_A Liver basic fatty acid 22.1 36 0.0012 25.9 1.6 55 51-107 34-89 (125)
48 3q6l_A Fatty acid-binding prot 22.1 55 0.0019 26.0 2.7 57 50-108 56-113 (152)
49 1ggl_A Protein (cellular retin 22.0 48 0.0016 25.4 2.3 56 50-107 35-93 (134)
50 4ayb_P DNA-directed RNA polyme 21.7 27 0.00092 24.2 0.7 15 87-101 17-31 (48)
51 2g7b_A Cellular retinoic acid- 21.6 38 0.0013 26.0 1.7 46 51-98 37-83 (137)
52 1mdc_A Insect fatty acid bindi 21.6 55 0.0019 25.0 2.6 46 51-98 36-82 (132)
53 3p6d_A Fatty acid-binding prot 21.3 59 0.002 25.2 2.7 57 50-108 43-100 (139)
54 1vyf_A SM14, 14 kDa fatty acid 21.0 64 0.0022 24.7 2.8 56 50-107 37-94 (135)
55 2qo4_A Liver-basic fatty acid 20.9 39 0.0013 25.6 1.6 56 50-107 34-90 (126)
56 3vgz_A Uncharacterized protein 20.6 1E+02 0.0035 23.3 3.9 10 52-61 52-61 (353)
57 1qyp_A RNA polymerase II; tran 20.3 34 0.0012 22.5 1.0 19 82-101 5-23 (57)
58 3ppt_A Sodium-calcium exchange 20.2 52 0.0018 25.2 2.2 57 50-108 35-92 (133)
59 1waz_A MERF; protein structure 20.1 74 0.0025 21.8 2.6 12 183-194 33-44 (46)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=90.30 E-value=0.51 Score=34.59 Aligned_cols=39 Identities=13% Similarity=0.298 Sum_probs=17.6
Q ss_pred eEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027567 164 HVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARF 202 (222)
Q Consensus 164 ~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARf 202 (222)
+++.||+-++.+++++.+.++.++|+...-+..+++|||
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kF 47 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKF 47 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555667644433333333333
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=89.37 E-value=0.1 Score=35.39 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhHHH
Q 027567 184 VAAYKYWQKKKRQQD 198 (222)
Q Consensus 184 ~~~yk~wqkkkRe~~ 198 (222)
++.+=||+||++++.
T Consensus 28 ~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 28 LTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHTTCSSCC
T ss_pred HHHHHHhhhhhhhhc
Confidence 335667887776653
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=87.93 E-value=0.22 Score=33.51 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=15.7
Q ss_pred ceEeehhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 027567 163 MHVAIIVLISLLASIVTAIVLVAAYKYWQKKKRQQ 197 (222)
Q Consensus 163 ~~~~viii~~vl~s~~~~~~~~~~yk~wqkkkRe~ 197 (222)
..++.-|+.++++.++++ ++.+=||+||++++
T Consensus 11 ~~IA~gVVgGv~~~~ii~---~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVA---LGIGLFMRRRHIVR 42 (44)
T ss_dssp SSSTHHHHHHHHHHHHHH---HHHHHHHHTTTCCS
T ss_pred ceEEeehhHHHHHHHHHH---HHHHHHhhhhHhhc
Confidence 334444555555433333 33555777766543
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=76.83 E-value=1.3 Score=28.71 Aligned_cols=8 Identities=0% Similarity=-0.284 Sum_probs=4.6
Q ss_pred HHHHHHHH
Q 027567 186 AYKYWQKK 193 (222)
Q Consensus 186 ~yk~wqkk 193 (222)
+|-+|+||
T Consensus 31 ~~~~~rrr 38 (38)
T 2k1k_A 31 LVFRSRRA 38 (38)
T ss_dssp HHHHHCCC
T ss_pred HHHHeecC
Confidence 45567654
No 5
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=74.41 E-value=0.63 Score=40.59 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=9.1
Q ss_pred ccccccccccccC
Q 027567 93 GTKCKRCGLYEED 105 (222)
Q Consensus 93 ~~KCKRCG~YEed 105 (222)
.-.|--=|||-++
T Consensus 200 ~L~C~a~gFyP~~ 212 (348)
T 1s7q_A 200 TLRCWALGFYPAD 212 (348)
T ss_dssp EEEEEEEEEBSSC
T ss_pred EEEEEEeeeECCC
Confidence 3457777888765
No 6
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=73.45 E-value=0.83 Score=31.77 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhcc
Q 027567 184 VAAYKYWQKKKRQQDQARFLKLFED 208 (222)
Q Consensus 184 ~~~yk~wqkkkRe~~qARflKLFEe 208 (222)
|-+||-+- |+|++++..+||+|+|
T Consensus 10 felfkey~-k~r~~~he~l~k~~~e 33 (50)
T 3qf7_D 10 FELFKEYL-KKREENHEKLLKILDE 33 (50)
T ss_dssp HHHHHHHH-HHHCTTHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHhhHHHHHHHHHH
Confidence 44667665 5799999999999986
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=70.92 E-value=3.3 Score=27.98 Aligned_cols=9 Identities=0% Similarity=0.076 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 027567 187 YKYWQKKKR 195 (222)
Q Consensus 187 yk~wqkkkR 195 (222)
+=||+||+.
T Consensus 32 ~~~~RRR~~ 40 (44)
T 2jwa_A 32 GILIKRRQQ 40 (44)
T ss_dssp HHHHHHHCS
T ss_pred Hhheehhhh
Confidence 334544443
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=68.92 E-value=2.6 Score=26.94 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 169 VLISLLASIVTAIVLVAAYKYWQKK 193 (222)
Q Consensus 169 ii~~vl~s~~~~~~~~~~yk~wqkk 193 (222)
+|.++.+........|-+|||-|||
T Consensus 8 viaglvalltflafgfwlfkylqkk 32 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWLFKYLQKK 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444333333445578887765
No 9
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=60.63 E-value=9.1 Score=28.02 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhhccCcchhh
Q 027567 179 TAIVLVAAYKYWQKKKRQQDQARFLKLFEDGDEIED 214 (222)
Q Consensus 179 ~~~~~~~~yk~wqkkkRe~~qARflKLFEe~Dd~e~ 214 (222)
+.+++-++||+---..|.+.+|.|-|=+.-.+|.|.
T Consensus 27 lsl~~~~~~k~~v~~pRK~aYadFYknYD~~k~fer 62 (73)
T 1v54_I 27 VSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEE 62 (73)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcCcHHHHHH
Confidence 334445577775566667789999998887777653
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=55.91 E-value=10 Score=24.35 Aligned_cols=39 Identities=26% Similarity=0.533 Sum_probs=23.3
Q ss_pred cCCCccccCceeeecCCccccccccccccccccccc-cccCCCCCCCCCcccc
Q 027567 66 ILPDVKEKNTTYVFKGEESWQPLTEFLGTKCKRCGL-YEEDTFNSDDVFDEWE 117 (222)
Q Consensus 66 ~LPDVk~~~~~YtF~GeESWQPLT~~~~~KCKRCG~-YEed~~~~DdvFDEWE 117 (222)
.=|.-+..+..|.... ....|+.||+ |+++.+ |.-.||.
T Consensus 7 ~CP~C~~~~l~~d~~~----------gelvC~~CG~v~~e~~i---d~~~ewr 46 (50)
T 1pft_A 7 VCPACESAELIYDPER----------GEIVCAKCGYVIEENII---DMGPEWR 46 (50)
T ss_dssp SCTTTSCCCEEEETTT----------TEEEESSSCCBCCCCCC---CCCSSSS
T ss_pred eCcCCCCcceEEcCCC----------CeEECcccCCccccccc---ccCCccc
Confidence 3455544455554432 2368999998 777666 3455674
No 11
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=55.10 E-value=29 Score=25.17 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=24.7
Q ss_pred CCceEeehhhHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHHH
Q 027567 161 KGMHVAIIVLISLLASIVTAIVLVAAYKYW------QKKKRQQDQAR 201 (222)
Q Consensus 161 k~~~~~viii~~vl~s~~~~~~~~~~yk~w------qkkkRe~~qAR 201 (222)
+-..+++.|++++++.+++++.+.=++..+ +|-.+|+++|+
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~ 55 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAK 55 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445566656666666666666666555444 44456667665
No 12
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=54.87 E-value=3.6 Score=32.19 Aligned_cols=48 Identities=27% Similarity=0.432 Sum_probs=28.5
Q ss_pred ccccccccccccCCCCCCCCCcccccCCCCCCCCCCceEEeeccccceeeeCCCCCCCC
Q 027567 93 GTKCKRCGLYEEDTFNSDDVFDEWEFCPGDFADNDGKYIRKTKKEFDATFLCPKCKSGR 151 (222)
Q Consensus 93 ~~KCKRCG~YEed~~~~DdvFDEWElCpsDF~~~dG~Y~~fKekeFnATFlCp~C~~~~ 151 (222)
.-+|..||.-=+ .+++.+ +++.....+.||-.--.-|.+.||.|.+..
T Consensus 70 ~~~C~~CG~~~~----~~~~~~-------~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 70 VFKCRNCNYEWK----LKEVKD-------KFDERIKEDIHFIPEVVHAFLACPKCGSHD 117 (139)
T ss_dssp EEEETTTCCEEE----GGGCTT-------CCSCCCGGGCCCCGGGCGGGCSCSSSSCCC
T ss_pred cEECCCCCCEEe----cccccc-------cccccccccccccccccccCCcCccccCCc
Confidence 468999995422 122222 343344555566554444567899998875
No 13
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=53.96 E-value=27 Score=26.25 Aligned_cols=20 Identities=5% Similarity=0.215 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhHHHHHHHh
Q 027567 184 VAAYKYWQKKKRQQDQARFL 203 (222)
Q Consensus 184 ~~~yk~wqkkkRe~~qARfl 203 (222)
+-.|.-|+++.|..+.++.+
T Consensus 21 ~p~~~~~~~~~~~~~~~~~~ 40 (144)
T 1oqw_A 21 IPQYQNYVARSEGASALASV 40 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33566666665555444444
No 14
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=53.73 E-value=3.1 Score=30.33 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=25.8
Q ss_pred ccccCceeeecCCccccccccccccccccccccc
Q 027567 70 VKEKNTTYVFKGEESWQPLTEFLGTKCKRCGLYE 103 (222)
Q Consensus 70 Vk~~~~~YtF~GeESWQPLT~~~~~KCKRCG~YE 103 (222)
.+.....|+++|++ -.+.+.++..|..||=..
T Consensus 15 ~~~~~~~~~~kg~~--~~v~~v~~~~C~~CGE~~ 46 (133)
T 3o9x_A 15 SGIKDIPYTFRGRK--TVLKGIHGLYCVHCEESI 46 (133)
T ss_dssp EEEEEEEEEETTEE--EEEEEEEEEEESSSSCEE
T ss_pred eceEEEEEEECCEE--EEECCCceeECCCCCCEe
Confidence 34567899999988 677778999999999543
No 15
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=56.82 E-value=3.1 Score=27.79 Aligned_cols=19 Identities=42% Similarity=0.618 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 027567 178 VTAIVLVAAYKYWQKKKRQ 196 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe 196 (222)
++++.+.+++-.||||-|=
T Consensus 20 i~iisLIiLi~~w~qKPrY 38 (39)
T 2l6w_A 20 LTIISLIILIMLWQKKPRY 38 (39)
Confidence 3445555677889999874
No 16
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} SCOP: g.61.1.1 PDB: 1hn6_A
Probab=48.79 E-value=3.6 Score=40.06 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhhccCc
Q 027567 178 VTAIVLVAAYKYWQKKKRQQDQARFLKLFEDGD 210 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe~~qARflKLFEe~D 210 (222)
++++++..+|++|+||+.-.++.|+++-.+=|.
T Consensus 523 ~~~~a~~~~~~~~k~~~~~~~ydk~~~~~~y~~ 555 (581)
T 2j5l_A 523 VAVLATILMVYLYKRKGNAEKYDKMDQPQHYGK 555 (581)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCccchhhhcchhccCC
Confidence 333444456779988888888888887665443
No 17
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=47.58 E-value=4.5 Score=28.28 Aligned_cols=27 Identities=30% Similarity=0.651 Sum_probs=22.0
Q ss_pred cCceeeecCCccccccccccccccccccc
Q 027567 73 KNTTYVFKGEESWQPLTEFLGTKCKRCGL 101 (222)
Q Consensus 73 ~~~~YtF~GeESWQPLT~~~~~KCKRCG~ 101 (222)
.+..|+++|+. --+-+.++..|.+||=
T Consensus 18 ~~~~~~~~G~~--~~I~~Vp~~~C~~CGE 44 (78)
T 3ga8_A 18 KDIPYTFRGRK--TVLKGIHGLYCVHCEE 44 (78)
T ss_dssp EEEEEEETTEE--EEEEEEEEEEETTTCC
T ss_pred EEEEEEECCEE--EEEcCceeEECCCCCC
Confidence 45678999987 5667889999999993
No 18
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=46.61 E-value=21 Score=26.96 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=10.4
Q ss_pred HHHHHHHHHhHHHHHHHhh
Q 027567 186 AYKYWQKKKRQQDQARFLK 204 (222)
Q Consensus 186 ~yk~wqkkkRe~~qARflK 204 (222)
.|.-+++|.|+++..+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~ 41 (158)
T 2hi2_A 23 AYQDYTARAQVSEAILLAE 41 (158)
T ss_dssp THHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhHHHHH
Confidence 5666666666555444443
No 19
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=46.54 E-value=41 Score=25.68 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=7.0
Q ss_pred HHHHHHHHHhHHHH
Q 027567 186 AYKYWQKKKRQQDQ 199 (222)
Q Consensus 186 ~yk~wqkkkRe~~q 199 (222)
.|.-+++|.|..+.
T Consensus 23 ~~~~~~~~~~~~~~ 36 (151)
T 3sok_A 23 AYNDYIARSQAAEG 36 (151)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544433
No 20
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=40.39 E-value=22 Score=29.08 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=12.9
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYWQKKKRQQ 197 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~wqkkkRe~ 197 (222)
+-|++.+..-+++++|+.++ |-+-||||.
T Consensus 54 lYIL~vmgffgff~~GImLs--YiRSKk~E~ 82 (138)
T 2k21_A 54 LYVLMVLGFFGFFTLGIMLS--YIRSKKLEH 82 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--HHHHHHHCC
T ss_pred ehHHHHHHHHHHHHHHHHHH--HhHhhhccc
Confidence 33333333333444554434 445555543
No 21
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=40.21 E-value=33 Score=21.45 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=4.0
Q ss_pred HHhHHHHHHH
Q 027567 193 KKRQQDQARF 202 (222)
Q Consensus 193 kkRe~~qARf 202 (222)
|||+++++.+
T Consensus 25 ~Kr~K~~~~m 34 (37)
T 2rdd_B 25 QKRTKEHKKL 34 (37)
T ss_dssp HHHHHHHTTG
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 22
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=39.40 E-value=34 Score=26.16 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=22.9
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFLK 204 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARflK 204 (222)
||+|+++|+ .+++-.+..|.--.|.+..+++++-++
T Consensus 9 viaIigiLa--aia~p~~~~~~~~~~~~~~~~~~~~~~ 44 (151)
T 3sok_A 9 VVAIIGILA--AFAIPAYNDYIARSQAAEGLTLADGLK 44 (151)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666 444566667777777777666655544
No 23
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=39.39 E-value=23 Score=26.59 Aligned_cols=14 Identities=43% Similarity=1.108 Sum_probs=10.3
Q ss_pred cccccccccc-cccc
Q 027567 91 FLGTKCKRCG-LYEE 104 (222)
Q Consensus 91 ~~~~KCKRCG-~YEe 104 (222)
...-+|.-|| +|++
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 4567899999 5654
No 24
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=38.45 E-value=29 Score=22.99 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=8.7
Q ss_pred hhhHHHHH-HHHHHHHHHHHHH
Q 027567 168 IVLISLLA-SIVTAIVLVAAYK 188 (222)
Q Consensus 168 iii~~vl~-s~~~~~~~~~~yk 188 (222)
||++|+++ ..++++..+.+||
T Consensus 12 iIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 12 WVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 3333334444444
No 25
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.72 E-value=25 Score=24.48 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=9.4
Q ss_pred hhhHHHH-HHHHHHHHHHHHHH
Q 027567 168 IVLISLL-ASIVTAIVLVAAYK 188 (222)
Q Consensus 168 iii~~vl-~s~~~~~~~~~~yk 188 (222)
||++|++ ...++++.++.+||
T Consensus 14 iIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 14 WVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 33344444455555
No 26
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.42 E-value=12 Score=22.93 Aligned_cols=31 Identities=13% Similarity=-0.038 Sum_probs=14.8
Q ss_pred ccCCCCCCCCCCceEEeeccccceeeeCCCC
Q 027567 117 EFCPGDFADNDGKYIRKTKKEFDATFLCPKC 147 (222)
Q Consensus 117 ElCpsDF~~~dG~Y~~fKekeFnATFlCp~C 147 (222)
+.|+.-|...+....|-+...=.-.|.|+.|
T Consensus 43 ~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C 73 (73)
T 2ctu_A 43 EKCRKDSCQEAALNKDEGNESGKKTSGPSSG 73 (73)
T ss_dssp HHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred CCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence 4455556554444444333222234667766
No 27
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=35.82 E-value=13 Score=23.60 Aligned_cols=9 Identities=44% Similarity=1.516 Sum_probs=8.0
Q ss_pred eeCCCCCCC
Q 027567 142 FLCPKCKSG 150 (222)
Q Consensus 142 FlCp~C~~~ 150 (222)
|+||.|+..
T Consensus 6 FiCP~C~~~ 14 (34)
T 3mjh_B 6 FICPQCMKS 14 (34)
T ss_dssp EECTTTCCE
T ss_pred cCCcHHHHH
Confidence 999999875
No 28
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=34.66 E-value=36 Score=25.49 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=19.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQARFL 203 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qARfl 203 (222)
||+|+++|+ .+++-.+.-|.--+|.++.+++.+-+
T Consensus 9 vi~Ii~il~--~ia~p~~~~~~~~~~~~~~~~~~~~~ 43 (144)
T 1oqw_A 9 VVAIIGILA--AIAIPQYQNYVARSEGASALASVNPL 43 (144)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666 34455566666666665555444333
No 29
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=33.08 E-value=11 Score=25.34 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=17.7
Q ss_pred eEeehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027567 164 HVAIIVLISLLASIVTAIVLVAAYKYWQKK 193 (222)
Q Consensus 164 ~~~viii~~vl~s~~~~~~~~~~yk~wqkk 193 (222)
.++.-|+.++++.++++++.++..+.=+++
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344455556666666777766666654333
No 30
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=32.39 E-value=26 Score=23.34 Aligned_cols=10 Identities=40% Similarity=1.175 Sum_probs=7.2
Q ss_pred cccccccc-cc
Q 027567 94 TKCKRCGL-YE 103 (222)
Q Consensus 94 ~KCKRCG~-YE 103 (222)
-+|.-||. |+
T Consensus 5 y~C~vCGyvyd 15 (46)
T 6rxn_A 5 YVCNVCGYEYD 15 (46)
T ss_dssp EEETTTCCEEC
T ss_pred EECCCCCeEEe
Confidence 47999995 44
No 31
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=32.23 E-value=9.6 Score=24.20 Aligned_cols=17 Identities=18% Similarity=0.577 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027567 179 TAIVLVAAYKYWQKKKR 195 (222)
Q Consensus 179 ~~~~~~~~yk~wqkkkR 195 (222)
++.+++.+|.||.+++.
T Consensus 12 isGcivalF~hWL~~r~ 28 (30)
T 4b19_A 12 ISGCAIAFFSYWLSRRN 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 33455668999998753
No 32
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=31.28 E-value=10 Score=32.13 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=7.8
Q ss_pred cccccccccccC
Q 027567 94 TKCKRCGLYEED 105 (222)
Q Consensus 94 ~KCKRCG~YEed 105 (222)
..|--=|||-++
T Consensus 203 L~C~a~gFyP~~ 214 (315)
T 1cd1_A 203 LVCHVSGFYPKP 214 (315)
T ss_dssp EEEEEEEEBSSC
T ss_pred EEEEEeeeeCCC
Confidence 456666888665
No 33
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=31.00 E-value=29 Score=26.58 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=33.0
Q ss_pred CCCeEEEEeeCCCcccCCCccccCceeeec-CCccccccccccccccccccccccCCC
Q 027567 51 NKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKRCGLYEEDTF 107 (222)
Q Consensus 51 ~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKRCG~YEed~~ 107 (222)
.+|++-+...|++-+.-=--.-++.-++|+ |||.=.-++.+.++|||-==-.|.|.+
T Consensus 36 ~kp~~ei~~~Gd~~~ikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kL 93 (134)
T 1crb_A 36 LKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKL 93 (134)
T ss_dssp CCCEEEEEEETTEEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEE
T ss_pred CCceEEEEEcCCEEEEEEecCCceEEEEEeCCCeeeeeeecCCCCEEEEEEEEECCEE
Confidence 578888888887644322222345666676 555222236678888885434454444
No 34
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=30.81 E-value=50 Score=21.56 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027567 176 SIVTAIVLVAAYKYWQKK 193 (222)
Q Consensus 176 s~~~~~~~~~~yk~wqkk 193 (222)
++++.+.....+|++..-
T Consensus 20 ivliGl~lLliwk~~~~i 37 (43)
T 2k9j_B 20 ILLIGLAALLIWKLLITI 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhe
Confidence 334444555566666543
No 35
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=30.15 E-value=65 Score=20.77 Aligned_cols=11 Identities=9% Similarity=-0.079 Sum_probs=6.3
Q ss_pred HHHHHHHHHhH
Q 027567 186 AYKYWQKKKRQ 196 (222)
Q Consensus 186 ~yk~wqkkkRe 196 (222)
.|.-++|-+||
T Consensus 25 v~ieYrk~~kQ 35 (36)
T 1pi7_A 25 VIIEGRGGKKK 35 (36)
T ss_pred HHHHHHHHHhc
Confidence 45556665554
No 36
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=28.08 E-value=42 Score=23.49 Aligned_cols=21 Identities=24% Similarity=0.581 Sum_probs=9.2
Q ss_pred hhhHHHHH-HHHHHHHHHHHHH
Q 027567 168 IVLISLLA-SIVTAIVLVAAYK 188 (222)
Q Consensus 168 iii~~vl~-s~~~~~~~~~~yk 188 (222)
||++|+++ ..++++.++++||
T Consensus 11 iIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 11 VILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 2333444445554
No 37
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=27.55 E-value=13 Score=36.30 Aligned_cols=8 Identities=50% Similarity=0.671 Sum_probs=0.0
Q ss_pred hhhHHHHH
Q 027567 168 IVLISLLA 175 (222)
Q Consensus 168 iii~~vl~ 175 (222)
+||+++++
T Consensus 709 ~il~~~~~ 716 (880)
T 1q55_A 709 VILGSVLA 716 (880)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44444443
No 38
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=27.37 E-value=37 Score=25.87 Aligned_cols=56 Identities=30% Similarity=0.317 Sum_probs=33.9
Q ss_pred CCCeEEEEeeCCCcccCCCccccCceeeec-CCccccccccccccccccccccccCCCC
Q 027567 51 NKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKRCGLYEEDTFN 108 (222)
Q Consensus 51 ~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKRCG~YEed~~~ 108 (222)
.+|++-+...|++-+.----.-++.-++|+ ||| -..+.+.++|||-==-+|.|.+.
T Consensus 36 ~kp~~ei~~~Gd~~~ikt~s~~k~~~~~F~lGeE--fee~t~dgrk~ks~~t~eg~kLv 92 (131)
T 1fdq_A 36 TKPTVIISQEGDKVVIRTLSTFKNTEISFQLGEE--FDETTADDRNCKSVVSLDGDKLV 92 (131)
T ss_dssp CCCEEEEEEETTEEEEEEECSSCBCCEEECTTCC--EEEECTTCCEEEEEEEEETTEEE
T ss_pred CCCeEEEEEcCCEEEEEEecCCccEEEEEeCCCc--eEEECCCCCEEEEEEEEECCEEE
Confidence 688888888887654332222345556776 444 33466888888864444555543
No 39
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=27.20 E-value=32 Score=26.78 Aligned_cols=59 Identities=19% Similarity=0.083 Sum_probs=37.3
Q ss_pred CCCCeEEEEeeCCCcccCCCccccCceeeec-CCccccccccccccccccccccccCCCC
Q 027567 50 DNKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKRCGLYEEDTFN 108 (222)
Q Consensus 50 ~~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKRCG~YEed~~~ 108 (222)
..+|++-+...|++-+.-=--.-++...+|+ |||.=.-++.+.++|||-==-.|.|.+.
T Consensus 39 ~~kp~~ei~~~Gd~~tikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv 98 (141)
T 2rcq_A 39 RLTQTKVIDQDGDNFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLV 98 (141)
T ss_dssp TCCCEEEEEEETTEEEEEEECSSCEEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEE
T ss_pred cCCcEEEEEEeCCEEEEEEEcCCeEEEEEEECCCeEEeeeecCCCCEEEEEEEEeCCEEE
Confidence 4689999999887755433333456667777 7773333477888888854444555443
No 40
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=26.97 E-value=32 Score=26.39 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=32.0
Q ss_pred CCCeEEEEeeCCCcccCCCccccCceeeec-CCccccccccccccccccccccccCCC
Q 027567 51 NKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKRCGLYEEDTF 107 (222)
Q Consensus 51 ~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKRCG~YEed~~ 107 (222)
.+|++-+...|++-+.----.-++.-++|+ ||| -..+.+.++|||-==-.|.|.+
T Consensus 39 ~kp~~ei~~~Gd~~tikt~s~~k~~~~~F~lGeE--fee~t~dgrk~ks~vt~eg~kL 94 (135)
T 1b56_A 39 AKPDCIITCDGKNLTIKTESTLKTTQFSCTLGEK--FEETTADGRKTQTVCNFTDGAL 94 (135)
T ss_dssp CCCEEEEEEETTEEEEEEECSSCEEEEEEETTCC--EEEECTTSCEEEEEEEEETTEE
T ss_pred CCcEEEEEEcCCEEEEEEEcCCceEEEEEECCCc--EEEECCCCCeEEEEEEEECCEE
Confidence 578888888887643322222345555665 555 3446678888875333454444
No 41
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=26.85 E-value=15 Score=26.03 Aligned_cols=10 Identities=60% Similarity=1.554 Sum_probs=7.2
Q ss_pred cccccccccc
Q 027567 94 TKCKRCGLYE 103 (222)
Q Consensus 94 ~KCKRCG~YE 103 (222)
++|.+||.|-
T Consensus 7 r~C~~CgvYT 16 (60)
T 2apo_B 7 KKCPKCGLYT 16 (60)
T ss_dssp EECTTTCCEE
T ss_pred eeCCCCCCEe
Confidence 5788887773
No 42
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=26.44 E-value=15 Score=26.05 Aligned_cols=10 Identities=50% Similarity=1.338 Sum_probs=7.8
Q ss_pred cccccccccc
Q 027567 94 TKCKRCGLYE 103 (222)
Q Consensus 94 ~KCKRCG~YE 103 (222)
++|..||.|-
T Consensus 6 r~C~~Cg~YT 15 (60)
T 2aus_D 6 RKCPKCGRYT 15 (60)
T ss_dssp EECTTTCCEE
T ss_pred eECCCCCCEE
Confidence 5788888884
No 43
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=26.10 E-value=31 Score=26.16 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=28.9
Q ss_pred CCCCeEEEEeeCCCcccCCCccccCceeeec-CCccccccccccccccccccccccCCC
Q 027567 50 DNKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKRCGLYEEDTF 107 (222)
Q Consensus 50 ~~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKRCG~YEed~~ 107 (222)
..+|++-+...|++-+.----.-++.-.+|+ ||| -..+.+.++|||-==-.|.|.+
T Consensus 33 ~~kp~~ei~~~Gd~~~ikt~s~~k~~~~~F~lGeE--fee~t~dgrk~ks~vt~eg~kL 89 (125)
T 1p6p_A 33 DVNPVIEIEQNGNEFVVTSKTPKQTHSNSFTVGKE--SEITSMDGKKIKVTVQLEGGKL 89 (125)
T ss_dssp TCCCEEEEEECSSEEEEEEEETTEEEEEEEETTSC--EEECTTTSCCEEEEEEECSSEE
T ss_pred cCCcEEEEEEcCCEEEEEEEcCCeEEEEEEECCCc--EEEEcCCCCEEEEEEEEECCEE
Confidence 3577777777776543322222334444554 555 3455577777775333343333
No 44
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=25.45 E-value=56 Score=24.87 Aligned_cols=53 Identities=26% Similarity=0.145 Sum_probs=31.6
Q ss_pred CCCCeEEEEeeCCCcccCCCccccCceeeec-CCcccccccccccccccccccccc
Q 027567 50 DNKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKRCGLYEE 104 (222)
Q Consensus 50 ~~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKRCG~YEe 104 (222)
..+|++-+...|++-+.-=--.-++.-.+|+ ||| -..+.+.++|||-==-.|.
T Consensus 35 ~~kp~~ei~~~Gd~~~ikt~s~~k~~~~~F~lGeE--fee~t~dgrk~ks~~t~eg 88 (131)
T 2a0a_A 35 TLKPTFEVAIENDQYIFRSLSTFKNTEAKFKLGEE--FEEDRADGKRVKTVIQKEG 88 (131)
T ss_dssp TTCCEEEEEECSSCEEEEECCTTSCEEEEECSSCC--EEEEETTTEEEEEEEEEET
T ss_pred cCCceEEEEEcCCEEEEEEEcCCeeEEEEEECCCc--EEEECCCCCEEEEEEEEeC
Confidence 3688998888887644332233445556665 555 3345678888874333344
No 45
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=22.87 E-value=15 Score=27.21 Aligned_cols=26 Identities=4% Similarity=0.264 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhh
Q 027567 181 IVLVAAYKYWQKKKRQQDQARFLKLF 206 (222)
Q Consensus 181 ~~~~~~yk~wqkkkRe~~qARflKLF 206 (222)
+++|..-|-|.|++|.|.-++.=+|.
T Consensus 26 lcI~ccvkcrhRrrqAeRMSQikrlL 51 (70)
T 2klu_A 26 LGIFFSVRSRHRRRQAERMSQIKRLL 51 (70)
T ss_dssp HHHHHHHHSSCCSSSCTTSSHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444457777766665444433333
No 46
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=22.55 E-value=63 Score=19.91 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 027567 182 VLVAAYKYWQKKKRQQDQ 199 (222)
Q Consensus 182 ~~~~~yk~wqkkkRe~~q 199 (222)
+.+..|-||++-|..++|
T Consensus 4 Aa~mI~e~yrq~K~~r~q 21 (26)
T 3bxl_B 4 AAMMIMDYYKQSKVKKQR 21 (26)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 344578888865544444
No 47
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=22.14 E-value=36 Score=25.85 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=28.8
Q ss_pred CCCeEEEEeeCCCcccCCCccccCceeeec-CCccccccccccccccccccccccCCC
Q 027567 51 NKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKRCGLYEEDTF 107 (222)
Q Consensus 51 ~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKRCG~YEed~~ 107 (222)
.+|++-+...|++-+.----.-++.-.+|+ ||| -..+.+.++|||-==-.|.|.+
T Consensus 34 ~kp~~ei~~~Gd~~~ikt~s~~k~~~~~F~lGeE--fee~t~dgrk~ks~vt~eg~kL 89 (125)
T 1mvg_A 34 IKPIVEIQQKGDDFVVTSKTPRQTVTNSFTLGKE--ADITTMDGKKLKCTVHLANGKL 89 (125)
T ss_dssp CCCEEEEEEETTEEEEEEECSSCEEEEEEETTEE--EEEEETTTEEEEEEEEECSSEE
T ss_pred CCcEEEEEEeCCEEEEEEEcCCeEEEEEEECCCc--EEEECCCCCEeeEEEEEECCEE
Confidence 577777777776543322222334445554 444 2445577777775333344433
No 48
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=22.12 E-value=55 Score=26.03 Aligned_cols=57 Identities=21% Similarity=0.175 Sum_probs=37.6
Q ss_pred CCCCeEEEEeeCCCcccCCCccccCceeeec-CCccccccccccccccccccccccCCCC
Q 027567 50 DNKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKRCGLYEEDTFN 108 (222)
Q Consensus 50 ~~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKRCG~YEed~~~ 108 (222)
..+|++-+...|++-+.--.-.-++.-.+|+ ||| -.-+...++|||--=-.|.|.+.
T Consensus 56 ~~kp~~eI~~~Gd~~tikt~st~kt~~~~F~lGeE--fee~t~dGrk~Ks~vt~eg~kLv 113 (152)
T 3q6l_A 56 MAKPNMIISVNGDVITIKSESTFKNTEISFILGQE--FDEVTADDRKVKSTITLDGGVLV 113 (152)
T ss_dssp HCCCEEEEEEETTEEEEEEECSSCCEEEEECTTCC--EEEECTTCCEEEEEEEEETTEEE
T ss_pred hCCCeEEEEEcCCEEEEEEEeccccEEEEEEcCCc--EEeecCCCCEEEEEEEEECCEEE
Confidence 4689999999998765432233355666776 555 44556789999966556666553
No 49
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=22.01 E-value=48 Score=25.43 Aligned_cols=56 Identities=25% Similarity=0.256 Sum_probs=33.5
Q ss_pred CCCCeEEEEeeCCCcccCCCccccCceeeec-CCcccccccc--ccccccccccccccCCC
Q 027567 50 DNKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTE--FLGTKCKRCGLYEEDTF 107 (222)
Q Consensus 50 ~~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~--~~~~KCKRCG~YEed~~ 107 (222)
..+|++-+...|++-+.-=--.-++.-.+|+ ||| -.-+. +.++|||-==-.|.|.+
T Consensus 35 ~~kp~~ei~~~Gd~~~ikt~s~~k~~~~~F~lGeE--fee~t~~~dgrk~ks~vt~eg~kL 93 (134)
T 1ggl_A 35 LLKPDKEIEHQGNHMTVRTLSTFRNYTVQFDVGVE--FEEDLRSVDGRKCQTIVTWEEEHL 93 (134)
T ss_dssp GCCCEEEEEECSSEEEEEEECSSCCEEEEEETTSC--EEEEETTTTSEEEEEEEEECSSSE
T ss_pred cCCcEEEEEEcCCEEEEEEEcCCceEEEEeeCCCc--EEEEccCCCCcEeeeEEEEECCEE
Confidence 3688888888887654332233455566665 555 34455 77888885333444444
No 50
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=21.74 E-value=27 Score=24.19 Aligned_cols=15 Identities=33% Similarity=0.848 Sum_probs=13.2
Q ss_pred ccccccccccccccc
Q 027567 87 PLTEFLGTKCKRCGL 101 (222)
Q Consensus 87 PLT~~~~~KCKRCG~ 101 (222)
.|.-|++-||.-||+
T Consensus 17 el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 17 QLKVLPGVRCPYCGY 31 (48)
T ss_dssp CSCCCSSSCCTTTCC
T ss_pred HHhhCCCcccCccCc
Confidence 477889999999997
No 51
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=21.62 E-value=38 Score=25.95 Aligned_cols=46 Identities=33% Similarity=0.426 Sum_probs=21.3
Q ss_pred CCCeEEEEeeCCCcccCCCccccCceeeec-CCcccccccccccccccc
Q 027567 51 NKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKR 98 (222)
Q Consensus 51 ~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKR 98 (222)
.+|++-+...|++-+.=-.-.-++.-.+|+ ||| -.-+.+.++|||-
T Consensus 37 ~kp~~ei~~~Gd~~tikt~s~~kt~~~~F~lGeE--fee~t~dgrk~ks 83 (137)
T 2g7b_A 37 SKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEE--FEEQTVDGRPCKS 83 (137)
T ss_dssp SSCEEEEEEETTEEEEEEEETTEEEEEEEETTSC--EEEECTTSCEEEE
T ss_pred CCceEEEEECCCEEEEEEEECCeEEEEEEecCCc--eEEECCCCCEEEE
Confidence 466666666665533221122223334443 343 2234466666664
No 52
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=21.59 E-value=55 Score=25.04 Aligned_cols=46 Identities=24% Similarity=0.191 Sum_probs=26.0
Q ss_pred CCCeEEEEeeCCCcccCCCccccCceeeec-CCcccccccccccccccc
Q 027567 51 NKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKR 98 (222)
Q Consensus 51 ~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKR 98 (222)
.+|++-+...|++-+.----.-++.-++|+ ||| -..+.+.++|||-
T Consensus 36 ~kp~~ei~~~Gd~~~ikt~s~~k~~~~~F~lGeE--fee~t~dgrk~ks 82 (132)
T 1mdc_A 36 DKPTQKMEANGDSYSNTSTGGGGAKTVSFKSGVE--FDDVIGAGDSVKS 82 (132)
T ss_dssp CCCEEEEEEETTEEEEEEESTTCCEEEEECTTCC--EEEEETTTEEEEE
T ss_pred CCceEEEEEeCCEEEEEEEcCCceeEEEEeCCCc--EEEECCCCCEEEE
Confidence 567777777776544332223445556665 444 2445567777764
No 53
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=21.34 E-value=59 Score=25.24 Aligned_cols=57 Identities=21% Similarity=0.175 Sum_probs=37.0
Q ss_pred CCCCeEEEEeeCCCcccCCCccccCceeeec-CCccccccccccccccccccccccCCCC
Q 027567 50 DNKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKRCGLYEEDTFN 108 (222)
Q Consensus 50 ~~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKRCG~YEed~~~ 108 (222)
..+|++-+...|++-+.--.-.-++.-.+|+ ||| -.-+...++|||--=-.|.|.+.
T Consensus 43 ~~kp~~~I~~~Gd~~tikt~s~~k~~~~~F~lGeE--fee~t~dgrk~ks~vt~eg~kLv 100 (139)
T 3p6d_A 43 MAKPNMIISVNGDVITIKSESTFKNTEISFILGQE--FDEVTADDRKVKSTITLDGGVLV 100 (139)
T ss_dssp HCCCEEEEEEETTEEEEEEECSSCCEEEEECTTCC--EEEECTTCCEEEEEEEEETTEEE
T ss_pred hCCCeEEEEEcCCEEEEEEEeccccEEEEEEcCCc--EEeecCCCCEEEEEEEEECCEEE
Confidence 3689999999998765422222355556776 555 34556689999865555665553
No 54
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=21.01 E-value=64 Score=24.68 Aligned_cols=56 Identities=29% Similarity=0.335 Sum_probs=33.1
Q ss_pred CCCCeEEEEeeCCCcccCCCccccCceeeec-CCcccccccccccccccccccc-ccCCC
Q 027567 50 DNKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKRCGLY-EEDTF 107 (222)
Q Consensus 50 ~~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKRCG~Y-Eed~~ 107 (222)
..+|++-+...|++-+.-=--.-++.-.+|+ ||| -..+.+.++|||-==-+ |.|.+
T Consensus 37 ~~kp~~ei~~~Gd~~~ikt~s~~k~~~~~F~lGeE--fee~t~dgrk~ks~~t~~eg~kL 94 (135)
T 1vyf_A 37 TVTPTVTFTMDGDKMTMLTESTFKNLSCTFKFGEE--FDEKTSDGRNVKSVVEKNSESKL 94 (135)
T ss_dssp TCCCEEEEEEETTEEEEEEECSSCCEEEEECTTCC--EEEECTTSCEEEEEEEEEETTEE
T ss_pred cCCceEEEEEcCCEEEEEEEcCCceEEEEEECCCC--EEEECCCCCEEEEEEEEccCCEE
Confidence 3688888888887644322222345556676 455 34466788888854444 55544
No 55
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=20.93 E-value=39 Score=25.61 Aligned_cols=56 Identities=25% Similarity=0.304 Sum_probs=30.5
Q ss_pred CCCCeEEEEeeCCCcccCCCccccCceeeec-CCccccccccccccccccccccccCCC
Q 027567 50 DNKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKRCGLYEEDTF 107 (222)
Q Consensus 50 ~~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKRCG~YEed~~ 107 (222)
..+|++-+.-.|++-+.----.-++.-.+|+ ||| -..+.+.++|||-==-.|.|.+
T Consensus 34 ~~kp~~ei~~~Gd~~~ikt~s~~k~~~~~F~lGeE--fee~t~dgrk~ks~~t~eg~kL 90 (126)
T 2qo4_A 34 DVKPVTEIQQNGSDFTITSKTPGKTVTNSFTIGKE--AEITTMDGKKLKCIVKLDGGKL 90 (126)
T ss_dssp TCCCEEEEEEETTEEEEEEEETTEEEEEEEETTBE--EEEECTTSCEEEEECEEETTEE
T ss_pred cCCceEEEEEeCCEEEEEEEcCCceEEEEeeCCCc--EEEECCCCCEeEEEEEEECCEE
Confidence 3678888877776543322222344455664 444 2445577777775333444444
No 56
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=20.64 E-value=1e+02 Score=23.33 Aligned_cols=10 Identities=0% Similarity=0.238 Sum_probs=6.4
Q ss_pred CCeEEEEeeC
Q 027567 52 KPTVYFKCQG 61 (222)
Q Consensus 52 kptVYF~C~G 61 (222)
...+|..+.+
T Consensus 52 g~~l~~~~~~ 61 (353)
T 3vgz_A 52 ENALWLATSQ 61 (353)
T ss_dssp TTEEEEEECC
T ss_pred CCEEEEEcCC
Confidence 3467777755
No 57
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=20.27 E-value=34 Score=22.53 Aligned_cols=19 Identities=26% Similarity=0.625 Sum_probs=13.9
Q ss_pred Cccccccccccccccccccc
Q 027567 82 EESWQPLTEFLGTKCKRCGL 101 (222)
Q Consensus 82 eESWQPLT~~~~~KCKRCG~ 101 (222)
|++|.-+... ..+|.+||-
T Consensus 5 e~~~~~~~~~-~~~Cp~Cg~ 23 (57)
T 1qyp_A 5 EQDLKTLPTT-KITCPKCGN 23 (57)
T ss_dssp CCCCSSSCEE-ECCCTTTCC
T ss_pred hhhhhcCCce-EeECCCCCC
Confidence 4567766654 678999996
No 58
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=20.20 E-value=52 Score=25.25 Aligned_cols=57 Identities=25% Similarity=0.208 Sum_probs=35.6
Q ss_pred CCCCeEEEEeeCCCcccCCCccccCceeeec-CCccccccccccccccccccccccCCCC
Q 027567 50 DNKPTVYFKCQGENKKILPDVKEKNTTYVFK-GEESWQPLTEFLGTKCKRCGLYEEDTFN 108 (222)
Q Consensus 50 ~~kptVYF~C~Genkt~LPDVk~~~~~YtF~-GeESWQPLT~~~~~KCKRCG~YEed~~~ 108 (222)
..+|++-+...|++-+.--.-.-++.-.+|+ ||| -.-+.+.++|||--=-.|.|.+.
T Consensus 35 ~~kp~~~I~~~Gd~~tikt~s~~k~~~~~F~lGeE--fee~t~dgrk~ks~vt~eg~kLv 92 (133)
T 3ppt_A 35 AATPTQEIKIDGDSWSIKTSTTFKTTDISFTIGQE--FDETTGDGRKIKTTCKIDGNAMI 92 (133)
T ss_dssp HCCCEEEEEEETTEEEEEEECSSCEEEEEEETTCC--EEEECTTCCEEEEEEEEETTEEE
T ss_pred cCCcEEEEEECCCEEEEEEEeCCccEEEEEECCCc--EEeEcCCCCEEEEEEEEECCEEE
Confidence 4789999998887654322222344556665 555 34456888899865555655553
No 59
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=20.06 E-value=74 Score=21.85 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHH
Q 027567 183 LVAAYKYWQKKK 194 (222)
Q Consensus 183 ~~~~yk~wqkkk 194 (222)
....|-+|+|+|
T Consensus 33 ~lt~ya~~r~~~ 44 (46)
T 1waz_A 33 GLTIYAIQRKRQ 44 (46)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 344789999775
Done!