Query 027567
Match_columns 222
No_of_seqs 33 out of 35
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 20:07:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027567.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027567hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 65.5 7.2 0.00052 25.7 5.7 29 167-200 9-37 (158)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 50.1 10 0.00073 25.0 4.2 27 178-204 12-38 (158)
3 d6rxna_ g.41.5.1 (A:) Rubredox 40.2 7.3 0.00053 24.6 2.1 12 140-151 28-39 (45)
4 d1dx8a_ g.41.5.1 (A:) Rubredox 34.4 14 0.001 25.1 2.9 12 140-151 39-50 (70)
5 d1iroa_ g.41.5.1 (A:) Rubredox 32.0 14 0.001 23.9 2.4 14 94-108 4-17 (53)
6 d2dsxa1 g.41.5.1 (A:1-52) Rubr 28.8 20 0.0015 23.0 2.8 15 94-109 4-18 (52)
7 d1ibia1 g.39.1.3 (A:117-144) C 26.2 7.3 0.00053 23.0 0.2 7 94-100 2-8 (28)
8 d1s24a_ g.41.5.1 (A:) Two-iron 24.4 26 0.0019 22.8 2.8 14 94-108 5-18 (56)
9 d2ey4e1 g.41.16.1 (E:4-55) Rib 23.7 8.7 0.00063 25.2 0.2 9 94-102 3-11 (52)
10 d1k3xa3 g.39.1.8 (A:223-262) E 23.7 14 0.001 22.3 1.2 10 139-148 30-39 (40)
11 d1tdza3 g.39.1.8 (A:225-271) D 22.3 15 0.0011 22.6 1.2 9 140-148 37-45 (47)
12 d1r2za3 g.39.1.8 (A:229-274) D 21.9 16 0.0012 22.4 1.2 10 139-148 36-45 (46)
13 d1brfa_ g.41.5.1 (A:) Rubredox 20.8 26 0.0019 22.5 2.2 12 95-107 4-15 (53)
14 d1v54i_ f.23.3.1 (I:) Mitochon 20.2 51 0.0037 22.7 3.8 34 181-214 29-62 (73)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=65.54 E-value=7.2 Score=25.75 Aligned_cols=29 Identities=17% Similarity=0.513 Sum_probs=15.1
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027567 167 IIVLISLLASIVTAIVLVAAYKYWQKKKRQQDQA 200 (222)
Q Consensus 167 viii~~vl~s~~~~~~~~~~yk~wqkkkRe~~qA 200 (222)
||+||+||+++ ++-.|.-|+++-|..+..
T Consensus 9 ViaIIgILaai-----a~P~~~~~~~~a~~~~~~ 37 (158)
T d2pila_ 9 VIAIVGILAAV-----ALPAYQDYTARAQVSEAI 37 (158)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 35555555432 233677777665544433
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=50.10 E-value=10 Score=24.97 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 027567 178 VTAIVLVAAYKYWQKKKRQQDQARFLK 204 (222)
Q Consensus 178 ~~~~~~~~~yk~wqkkkRe~~qARflK 204 (222)
|+++.+..++--+++-.++.++++...
T Consensus 12 IIgILaaia~P~~~~~~~~a~~~~~~~ 38 (158)
T d2pila_ 12 IVGILAAVALPAYQDYTARAQVSEAIL 38 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777778888888777777776554
No 3
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}
Probab=40.19 E-value=7.3 Score=24.60 Aligned_cols=12 Identities=25% Similarity=0.880 Sum_probs=8.4
Q ss_pred eeeeCCCCCCCC
Q 027567 140 ATFLCPKCKSGR 151 (222)
Q Consensus 140 ATFlCp~C~~~~ 151 (222)
.++.||.|.+..
T Consensus 28 ~dw~CP~C~a~K 39 (45)
T d6rxna_ 28 DDWCCPVCGVSK 39 (45)
T ss_dssp TTCBCTTTCCBG
T ss_pred CCCCCcCCCCcH
Confidence 455899997653
No 4
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=34.36 E-value=14 Score=25.13 Aligned_cols=12 Identities=42% Similarity=1.309 Sum_probs=8.8
Q ss_pred eeeeCCCCCCCC
Q 027567 140 ATFLCPKCKSGR 151 (222)
Q Consensus 140 ATFlCp~C~~~~ 151 (222)
.++.||.|.+..
T Consensus 39 ~dW~CP~Cga~K 50 (70)
T d1dx8a_ 39 DSFMCPACRSPK 50 (70)
T ss_dssp TTCBCTTTCCBG
T ss_pred CCCCCcCCCCcH
Confidence 445899998764
No 5
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=32.04 E-value=14 Score=23.87 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=8.8
Q ss_pred cccccccccccCCCC
Q 027567 94 TKCKRCGLYEEDTFN 108 (222)
Q Consensus 94 ~KCKRCG~YEed~~~ 108 (222)
-+|+.|| |.=|.-+
T Consensus 4 y~C~~Cg-yiYd~~~ 17 (53)
T d1iroa_ 4 YTCTVCG-YIYNPED 17 (53)
T ss_dssp EEETTTC-CEECTTT
T ss_pred eEcCCCC-cEECccc
Confidence 4799999 4444333
No 6
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=28.81 E-value=20 Score=22.97 Aligned_cols=15 Identities=40% Similarity=0.811 Sum_probs=9.7
Q ss_pred cccccccccccCCCCC
Q 027567 94 TKCKRCGLYEEDTFNS 109 (222)
Q Consensus 94 ~KCKRCG~YEed~~~~ 109 (222)
-.|+-|| |+=|.-+-
T Consensus 4 y~C~~Cg-yiYdp~~G 18 (52)
T d2dsxa1 4 YVCTVCG-YEYDPAKG 18 (52)
T ss_dssp EEETTTC-CEECTTTC
T ss_pred EEeCCCC-eEECcccC
Confidence 4699999 55554443
No 7
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=26.17 E-value=7.3 Score=22.99 Aligned_cols=7 Identities=71% Similarity=1.782 Sum_probs=6.0
Q ss_pred ccccccc
Q 027567 94 TKCKRCG 100 (222)
Q Consensus 94 ~KCKRCG 100 (222)
.+|.|||
T Consensus 2 d~CpRC~ 8 (28)
T d1ibia1 2 EKCSRCG 8 (28)
T ss_dssp EECTTTS
T ss_pred CcCcccc
Confidence 5899998
No 8
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=24.38 E-value=26 Score=22.80 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=9.1
Q ss_pred cccccccccccCCCC
Q 027567 94 TKCKRCGLYEEDTFN 108 (222)
Q Consensus 94 ~KCKRCG~YEed~~~ 108 (222)
-.|+-|| |.=|.-+
T Consensus 5 y~C~~Cg-yiYdp~~ 18 (56)
T d1s24a_ 5 WICITCG-HIYDEAL 18 (56)
T ss_dssp EEETTTT-EEEETTS
T ss_pred EECCCCC-cEECccc
Confidence 3699999 5544444
No 9
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=23.74 E-value=8.7 Score=25.19 Aligned_cols=9 Identities=56% Similarity=1.490 Sum_probs=6.0
Q ss_pred ccccccccc
Q 027567 94 TKCKRCGLY 102 (222)
Q Consensus 94 ~KCKRCG~Y 102 (222)
.||++||.|
T Consensus 3 rkC~~C~~Y 11 (52)
T d2ey4e1 3 RKCPKCGRY 11 (52)
T ss_dssp EECTTTCCE
T ss_pred ccCCcccce
Confidence 467777766
No 10
>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=23.68 E-value=14 Score=22.33 Aligned_cols=10 Identities=30% Similarity=1.105 Sum_probs=8.1
Q ss_pred ceeeeCCCCC
Q 027567 139 DATFLCPKCK 148 (222)
Q Consensus 139 nATFlCp~C~ 148 (222)
-.||.||.|-
T Consensus 30 R~t~~Cp~CQ 39 (40)
T d1k3xa3 30 RPFYWCPGCQ 39 (40)
T ss_dssp EEEEECTTTC
T ss_pred CCCEEChhhC
Confidence 4789999984
No 11
>d1tdza3 g.39.1.8 (A:225-271) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=22.30 E-value=15 Score=22.64 Aligned_cols=9 Identities=44% Similarity=1.305 Sum_probs=7.5
Q ss_pred eeeeCCCCC
Q 027567 140 ATFLCPKCK 148 (222)
Q Consensus 140 ATFlCp~C~ 148 (222)
+||.||.|-
T Consensus 37 ~t~~Cp~CQ 45 (47)
T d1tdza3 37 GTHFCPVCQ 45 (47)
T ss_dssp EEEECTTTS
T ss_pred ccEECcccc
Confidence 688899985
No 12
>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.85 E-value=16 Score=22.41 Aligned_cols=10 Identities=40% Similarity=1.245 Sum_probs=8.1
Q ss_pred ceeeeCCCCC
Q 027567 139 DATFLCPKCK 148 (222)
Q Consensus 139 nATFlCp~C~ 148 (222)
-.||.||.|-
T Consensus 36 R~t~~Cp~CQ 45 (46)
T d1r2za3 36 RGTHYCPRCQ 45 (46)
T ss_dssp EEEEECTTTC
T ss_pred CcCEEChhhC
Confidence 4788999984
No 13
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=20.82 E-value=26 Score=22.52 Aligned_cols=12 Identities=50% Similarity=0.866 Sum_probs=7.7
Q ss_pred ccccccccccCCC
Q 027567 95 KCKRCGLYEEDTF 107 (222)
Q Consensus 95 KCKRCG~YEed~~ 107 (222)
.|..|| |.=|.-
T Consensus 4 ~C~~Cg-yiYd~~ 15 (53)
T d1brfa_ 4 VCKICG-YIYDED 15 (53)
T ss_dssp EETTTC-CEEETT
T ss_pred ECCCCC-cEECcc
Confidence 699999 444433
No 14
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.25 E-value=51 Score=22.67 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhhccCcchhh
Q 027567 181 IVLVAAYKYWQKKKRQQDQARFLKLFEDGDEIED 214 (222)
Q Consensus 181 ~~~~~~yk~wqkkkRe~~qARflKLFEe~Dd~e~ 214 (222)
+++.++||+---.-|.+.+|-|-|-+.-.-|.|.
T Consensus 29 l~~a~~~Kf~v~eprKkaYadFYknYDa~KdFe~ 62 (73)
T d1v54i_ 29 LGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEE 62 (73)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHccchhhhHHH
Confidence 4455689998888899999999998876655553
Done!