Query 027569
Match_columns 221
No_of_seqs 170 out of 357
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 11:53:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4343 bZIP transcription fac 98.0 3.2E-06 7E-11 83.0 3.7 32 188-219 275-306 (655)
2 smart00338 BRLZ basic region l 98.0 4.5E-06 9.7E-11 59.7 3.4 29 192-220 3-31 (65)
3 PF00170 bZIP_1: bZIP transcri 97.7 2.6E-05 5.7E-10 55.6 2.9 28 193-220 4-31 (64)
4 PF07716 bZIP_2: Basic region 97.6 8.2E-05 1.8E-09 51.7 3.5 29 191-220 2-30 (54)
5 KOG3584 cAMP response element 96.8 0.0011 2.4E-08 61.4 3.6 33 188-220 285-317 (348)
6 KOG0709 CREB/ATF family transc 96.5 0.0022 4.9E-08 62.3 3.7 44 21-64 33-78 (472)
7 PF03131 bZIP_Maf: bZIP Maf tr 95.4 0.026 5.7E-07 43.1 4.4 33 188-220 24-56 (92)
8 KOG4005 Transcription factor X 93.6 0.065 1.4E-06 48.9 3.3 42 178-220 53-95 (292)
9 KOG0837 Transcriptional activa 42.0 48 0.001 30.9 4.8 22 199-220 211-232 (279)
10 COG5562 Phage envelope protein 42.0 11 0.00023 31.8 0.5 17 126-142 86-105 (137)
11 smart00243 GAS2 Growth-Arrest- 35.9 17 0.00037 27.6 0.8 13 126-138 54-66 (73)
12 cd08533 SAM_PNT-ETS-1,2 Steril 31.8 21 0.00045 26.6 0.7 16 125-140 39-54 (71)
13 cd08203 SAM_PNT Sterile alpha 27.5 28 0.0006 25.1 0.7 17 124-140 36-52 (66)
14 cd08757 SAM_PNT_ESE Sterile al 27.4 28 0.0006 25.4 0.7 17 124-140 38-54 (68)
15 cd08540 SAM_PNT-ERG Sterile al 27.4 27 0.00059 26.2 0.7 17 125-141 41-57 (75)
16 PF08563 P53_TAD: P53 transact 25.2 40 0.00086 20.8 1.0 17 89-105 6-22 (25)
17 smart00251 SAM_PNT SAM / Point 22.9 42 0.00092 25.3 1.0 53 87-139 11-66 (82)
18 cd08531 SAM_PNT-ERG_FLI-1 Ster 22.2 18 0.00039 27.1 -1.2 32 23-57 22-53 (75)
19 cd08532 SAM_PNT-PDEF-like Ster 22.1 40 0.00086 25.4 0.7 52 89-140 6-59 (76)
20 cd04405 RhoGAP_BRCC3-like RhoG 21.0 38 0.00083 30.8 0.5 16 93-108 1-16 (235)
No 1
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=98.04 E-value=3.2e-06 Score=82.96 Aligned_cols=32 Identities=38% Similarity=0.411 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHhHhhHHHHHHHHHHHHHHhh
Q 027569 188 FEKSIERRLRRKIKNRESAARSRARKQVAYNC 219 (221)
Q Consensus 188 ~~~~~~rr~~R~~kNResa~rsR~rKq~~~~e 219 (221)
+|..+-+|+.|||||||||..||+||++|+.-
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~ 306 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLG 306 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999854
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=98.03 E-value=4.5e-06 Score=59.70 Aligned_cols=29 Identities=45% Similarity=0.556 Sum_probs=26.9
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 192 IERRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 192 ~~rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
++++.+|+++||++|+++|.||++|+.+|
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~L 31 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEEL 31 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999876
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=97.72 E-value=2.6e-05 Score=55.64 Aligned_cols=28 Identities=43% Similarity=0.555 Sum_probs=25.5
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 193 ERRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 193 ~rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
.++.+|+++||++|+++|.||++|+.+|
T Consensus 4 ~k~~~rr~rNR~AAr~~R~RKk~~~~~L 31 (64)
T PF00170_consen 4 DKRERRRERNREAARRSRQRKKQYIEEL 31 (64)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5689999999999999999999999876
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=97.56 E-value=8.2e-05 Score=51.75 Aligned_cols=29 Identities=45% Similarity=0.531 Sum_probs=25.5
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 191 SIERRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 191 ~~~rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
.++.+.+|. +||++|+|+|+||++|+.+|
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~l 30 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEEL 30 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 456788888 99999999999999998765
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=96.79 E-value=0.0011 Score=61.45 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 188 FEKSIERRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 188 ~~~~~~rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
.|....+|+-|++||||-|+.=|.||++|+.+|
T Consensus 285 aee~trKRevRLmKNREAARECRRKKKEYVKCL 317 (348)
T KOG3584|consen 285 AEEATRKREVRLMKNREAARECRRKKKEYVKCL 317 (348)
T ss_pred chhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHH
Confidence 456667899999999999999999999999876
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=96.52 E-value=0.0022 Score=62.27 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=32.7
Q ss_pred cccCCccccccHHH--HHHhhcCCCCCCCcccHHHHHhhhcCCCCc
Q 027569 21 LVRQNSWYSLTLNE--VENQLGNLGKPLGSMNLDELLKSVWSTEAN 64 (221)
Q Consensus 21 L~rQ~SiysLTldE--~q~~Lg~~GK~lgSMNmDElLknIwsaee~ 64 (221)
.-|+..+|.++++- +-..+.+..-++.-|-.|.+|.++|...+.
T Consensus 33 fd~~~~~~~~~e~~~~~d~~~~d~~~pl~~~e~~S~l~s~~~~~Ds 78 (472)
T KOG0709|consen 33 FDRDVKDTRLIENGSLGDDPVLDQTQPLKTEESYSALSSVIGSNDS 78 (472)
T ss_pred cCccccchhhhhccccccccccccCCCCCcccccccchhhccCCCc
Confidence 45788888887754 333555666889999999999999986654
No 7
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=95.38 E-value=0.026 Score=43.12 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 188 FEKSIERRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 188 ~~~~~~rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
.+...-+..+|-+|||..|+++|.||..++.+|
T Consensus 24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~L 56 (92)
T PF03131_consen 24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEEL 56 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555778888999999999999999998765
No 8
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=93.63 E-value=0.065 Score=48.89 Aligned_cols=42 Identities=36% Similarity=0.489 Sum_probs=31.5
Q ss_pred CCCCCCCc-chhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 178 TPRRKRDD-NAFEKSIERRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 178 ~~grkR~~-~~~~~~~~rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
.+.|||.. +.. .-.|+=+||++|||.-|.-+|-||+|++.|+
T Consensus 53 ~~~rKr~RL~HL-S~EEK~~RrKLKNRVAAQtaRDrKKaRm~em 95 (292)
T KOG4005|consen 53 QPKRKRRRLDHL-SWEEKVQRRKLKNRVAAQTARDRKKARMEEM 95 (292)
T ss_pred chHHHHHhhccc-CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 35566655 222 2345567899999999999999999998775
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=42.04 E-value=48 Score=30.85 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.4
Q ss_pred HhHhhHHHHHHHHHHHHHHhhc
Q 027569 199 KIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 199 ~~kNResa~rsR~rKq~~~~e~ 220 (221)
-..|||-|.++|+||-.++.+|
T Consensus 211 rlrnreaa~Kcr~rkLdrisrL 232 (279)
T KOG0837|consen 211 RLRNREAASKCRKRKLDRISRL 232 (279)
T ss_pred HhhhHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999998765
No 10
>COG5562 Phage envelope protein [General function prediction only]
Probab=41.99 E-value=11 Score=31.81 Aligned_cols=17 Identities=47% Similarity=0.896 Sum_probs=14.6
Q ss_pred ccchhhhhH---Hhhhhhhh
Q 027569 126 LGELTLEDF---LVQAGLFA 142 (221)
Q Consensus 126 lGEMTLEDF---LvrAGvv~ 142 (221)
-|+.|.|+| |++|||++
T Consensus 86 sGqttF~ef~~~la~AGVfr 105 (137)
T COG5562 86 SGQTTFEEFCSALAEAGVFR 105 (137)
T ss_pred cCCccHHHHHHHHHhCCeEE
Confidence 478899999 78999986
No 11
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=35.91 E-value=17 Score=27.59 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=10.8
Q ss_pred ccchhhhhHHhhh
Q 027569 126 LGELTLEDFLVQA 138 (221)
Q Consensus 126 lGEMTLEDFLvrA 138 (221)
-|=||||+||.|-
T Consensus 54 GGW~tL~~fL~kh 66 (73)
T smart00243 54 GGWETLDEYLLKH 66 (73)
T ss_pred CcHHHHHHHHHhC
Confidence 4669999999874
No 12
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=31.79 E-value=21 Score=26.57 Aligned_cols=16 Identities=38% Similarity=0.218 Sum_probs=13.4
Q ss_pred CccchhhhhHHhhhhh
Q 027569 125 TLGELTLEDFLVQAGL 140 (221)
Q Consensus 125 TlGEMTLEDFLvrAGv 140 (221)
-|=.||.|||+.+|+.
T Consensus 39 ~LC~ls~edF~~~~p~ 54 (71)
T cd08533 39 DLCALGKERFLELAPD 54 (71)
T ss_pred HHHcCCHHHHHHHcCC
Confidence 4667999999999974
No 13
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=27.45 E-value=28 Score=25.11 Aligned_cols=17 Identities=47% Similarity=0.401 Sum_probs=14.3
Q ss_pred CCccchhhhhHHhhhhh
Q 027569 124 PTLGELTLEDFLVQAGL 140 (221)
Q Consensus 124 ~TlGEMTLEDFLvrAGv 140 (221)
..|=.||.|||+.|++.
T Consensus 36 ~~Lc~ls~edF~~~~p~ 52 (66)
T cd08203 36 KELCLLTKEDFLRRAPS 52 (66)
T ss_pred HHHHhCCHHHHHHHcCC
Confidence 45677999999999975
No 14
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=27.43 E-value=28 Score=25.38 Aligned_cols=17 Identities=41% Similarity=0.450 Sum_probs=14.4
Q ss_pred CCccchhhhhHHhhhhh
Q 027569 124 PTLGELTLEDFLVQAGL 140 (221)
Q Consensus 124 ~TlGEMTLEDFLvrAGv 140 (221)
..|=.||.|||+.||+.
T Consensus 38 k~LC~ms~edF~~~~p~ 54 (68)
T cd08757 38 QTLCSMTEEEFREAAGS 54 (68)
T ss_pred HHHHcCCHHHHHHHcCC
Confidence 45777999999999975
No 15
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=27.39 E-value=27 Score=26.22 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=13.8
Q ss_pred CccchhhhhHHhhhhhh
Q 027569 125 TLGELTLEDFLVQAGLF 141 (221)
Q Consensus 125 TlGEMTLEDFLvrAGvv 141 (221)
-|=.||.|||+.+|+..
T Consensus 41 ~LC~LskedF~~~ap~~ 57 (75)
T cd08540 41 ELCKMTKDDFQRLTPSY 57 (75)
T ss_pred HHHhCCHHHHHHHcCCC
Confidence 46679999999999654
No 16
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=25.20 E-value=40 Score=20.77 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=10.6
Q ss_pred hchhccCCchhhhhHHH
Q 027569 89 LARALSGKTVEQVWNEI 105 (221)
Q Consensus 89 Lp~~ls~KTVDEVWreI 105 (221)
+..+||+-|-++.|+-+
T Consensus 6 ~~~PLSQeTF~~LW~~l 22 (25)
T PF08563_consen 6 PELPLSQETFSDLWNLL 22 (25)
T ss_dssp -----STCCHHHHHHTS
T ss_pred CCCCccHHHHHHHHHhc
Confidence 34579999999999853
No 17
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=22.92 E-value=42 Score=25.28 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=29.3
Q ss_pred hhhchhccCCchhhhhHHHHhcccccccccccc---CCCCCCccchhhhhHHhhhh
Q 027569 87 LTLARALSGKTVEQVWNEIQQGQKKRYGQEMKS---HQREPTLGELTLEDFLVQAG 139 (221)
Q Consensus 87 ltLp~~ls~KTVDEVWreI~~~~~~~~~~~~~~---~~rQ~TlGEMTLEDFLvrAG 139 (221)
+.+|..--.=|.++|+.=|.-....-.-.+... .-....|=.||.|||+.+|+
T Consensus 11 ~~ip~dP~~Wt~~~V~~Wl~w~~~ef~L~~~~~~~f~m~G~~Lc~ls~edF~~~~p 66 (82)
T smart00251 11 LGIPADPQLWTEDHVLEWLEWAVKEFSLSPIDFSKFDMSGKELCSMSKEEFLERAP 66 (82)
T ss_pred hCCCCChhhCCHHHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHcCCHHHHHHHcC
Confidence 444444455678888876664322111011111 11223566799999999997
No 18
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=22.18 E-value=18 Score=27.11 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=23.7
Q ss_pred cCCccccccHHHHHHhhcCCCCCCCcccHHHHHhh
Q 027569 23 RQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKS 57 (221)
Q Consensus 23 rQ~SiysLTldE~q~~Lg~~GK~lgSMNmDElLkn 57 (221)
++-++-.+.++.||+- .||.|-.|+.+||++-
T Consensus 22 ~ef~L~~i~~~~F~~m---~Gk~LC~lt~edF~~~ 53 (75)
T cd08531 22 KEYGLQDVDVSRFQNI---DGKELCKMTKEDFLRL 53 (75)
T ss_pred HHcCCCCCChhhccCC---ChHHHHcCCHHHHHHH
Confidence 4445555566667553 7999999999999876
No 19
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=22.10 E-value=40 Score=25.37 Aligned_cols=52 Identities=13% Similarity=-0.059 Sum_probs=27.0
Q ss_pred hchhccCCchhhhhHHHHhcccccccc-cc-ccCCCCCCccchhhhhHHhhhhh
Q 027569 89 LARALSGKTVEQVWNEIQQGQKKRYGQ-EM-KSHQREPTLGELTLEDFLVQAGL 140 (221)
Q Consensus 89 Lp~~ls~KTVDEVWreI~~~~~~~~~~-~~-~~~~rQ~TlGEMTLEDFLvrAGv 140 (221)
||..--.=|.+.|+.=++-......-. +. .-.-....|=.||.|||+.|+..
T Consensus 6 ip~DP~~Ws~~~V~~WL~w~~~ef~L~~~~~~F~mnG~~LC~ls~edF~~r~p~ 59 (76)
T cd08532 6 ISPDPYQWSPANVQKWLLWTEHQYRLPPPPRCFELNGKDLCALSEEDFRRRAPQ 59 (76)
T ss_pred CCCChhhcCHHHHHHHHHHHHHHhCCCCchhcCCCCHHHHHcCCHHHHHHHcCC
Confidence 444444556777776554321110000 00 01112346777999999999865
No 20
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.99 E-value=38 Score=30.76 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=12.4
Q ss_pred ccCCchhhhhHHHHhc
Q 027569 93 LSGKTVEQVWNEIQQG 108 (221)
Q Consensus 93 ls~KTVDEVWreI~~~ 108 (221)
|+.+-|+|||+++.-.
T Consensus 1 ls~~~v~evW~~~tl~ 16 (235)
T cd04405 1 LSPEVVEEIWKEQTLI 16 (235)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3566799999998754
Done!