Query 027569
Match_columns 221
No_of_seqs 170 out of 357
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 20:11:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 98.9 5E-10 1.7E-14 78.2 2.9 27 194-220 1-27 (55)
2 2wt7_A Proto-oncogene protein 98.2 8.5E-07 2.9E-11 62.9 3.0 28 193-220 1-28 (63)
3 2dgc_A Protein (GCN4); basic d 97.8 6.5E-06 2.2E-10 58.7 2.5 26 195-220 10-35 (63)
4 1t2k_D Cyclic-AMP-dependent tr 97.8 1E-05 3.4E-10 56.8 2.9 27 194-220 1-27 (61)
5 1jnm_A Proto-oncogene C-JUN; B 97.3 0.00016 5.5E-09 50.8 3.5 26 195-220 2-27 (62)
6 3a5t_A Transcription factor MA 96.3 0.0048 1.6E-07 48.3 4.8 35 186-220 29-63 (107)
7 1ci6_A Transcription factor AT 95.5 0.0058 2E-07 43.2 1.9 27 194-220 2-28 (63)
8 1gd2_E Transcription factor PA 94.4 0.03 1E-06 40.6 3.3 26 195-220 9-34 (70)
9 1gu4_A CAAT/enhancer binding p 89.5 0.23 7.9E-06 36.6 2.9 32 189-220 10-41 (78)
10 1hjb_A Ccaat/enhancer binding 86.1 0.5 1.7E-05 35.5 3.0 33 188-220 9-41 (87)
11 1skn_P DNA-binding domain of S 82.9 1.5 5.3E-05 33.4 4.5 38 183-220 51-88 (92)
12 2wt7_B Transcription factor MA 70.2 6.5 0.00022 29.6 4.8 35 186-220 19-53 (90)
13 1r4g_A RNA polymerase alpha su 63.5 1.2 4.2E-05 30.6 -0.4 16 206-221 14-29 (53)
14 2p22_D Hypothetical 12.0 kDa p 51.8 4.4 0.00015 30.1 0.9 11 49-59 1-11 (79)
15 2k8f_B Cellular tumor antigen 33.0 10 0.00036 24.3 0.3 20 86-105 7-26 (39)
16 2jws_A GA88; evolution, foldin 30.7 15 0.00052 25.6 0.8 10 94-103 35-44 (56)
17 1sv0_A ETS DNA-binding protein 26.4 18 0.00063 26.5 0.7 53 88-140 5-60 (85)
18 1x66_A Friend leukemia integra 24.7 17 0.00059 27.3 0.2 56 87-142 18-77 (98)
19 2dkx_A SAM pointed domain-cont 23.4 22 0.00074 26.6 0.6 16 125-140 59-74 (96)
20 1sxe_A Transcriptional regulat 21.6 20 0.00067 26.9 0.0 56 86-141 20-79 (97)
21 4gb3_1 Coat protein 1; capsid 21.2 23 0.0008 31.6 0.4 20 123-142 56-75 (281)
22 3vbh_A EV71, genome polyprotei 21.1 24 0.00081 31.7 0.4 20 124-143 73-92 (297)
23 1q87_A 39 kDa initiator bindin 20.9 42 0.0014 29.0 1.9 29 95-139 36-64 (221)
24 2jv3_A ETS1 proto-oncogene; ET 20.7 30 0.001 26.5 0.9 55 87-141 35-92 (110)
25 2ytu_A Friend leukemia integra 20.3 25 0.00087 27.8 0.4 56 87-142 32-91 (128)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.91 E-value=5e-10 Score=78.23 Aligned_cols=27 Identities=37% Similarity=0.416 Sum_probs=25.5
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 194 RRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 194 rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
+|++|||+|||||+|||.||++|+.+|
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~L 27 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSL 27 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999987
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=98.17 E-value=8.5e-07 Score=62.91 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=26.5
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 193 ERRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 193 ~rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
|+|++|+++||++|+|||.||++|+.+|
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~L 28 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTL 28 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999887
No 3
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=97.85 E-value=6.5e-06 Score=58.69 Aligned_cols=26 Identities=35% Similarity=0.357 Sum_probs=21.1
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 195 RLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 195 r~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
+.++-.+|||+|+|||.||++|+.||
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~L 35 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQL 35 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33334459999999999999999987
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=97.81 E-value=1e-05 Score=56.80 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=25.3
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 194 RRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 194 rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
+|++|+++||++|++||.||++|+.+|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~L 27 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSL 27 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999886
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=97.30 E-value=0.00016 Score=50.77 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=23.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 195 RLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 195 r~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
+++|..+||++|++||.||++|+.+|
T Consensus 2 ~errr~rNr~AA~k~R~rKk~~~~~L 27 (62)
T 1jnm_A 2 AERKRMRNRIAASKSRKRKLERIARL 27 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46677889999999999999999886
No 6
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=96.26 E-value=0.0048 Score=48.31 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=30.2
Q ss_pred chhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 186 NAFEKSIERRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 186 ~~~~~~~~rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
...+...-+..||-.|||++|+++|.||.+.+.||
T Consensus 29 s~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~L 63 (107)
T 3a5t_A 29 SKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEEL 63 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 45566667899999999999999999999988776
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=95.45 E-value=0.0058 Score=43.16 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=19.8
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 194 RRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 194 rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
+|.+++..||..|+|+|.||++++.+|
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~l 28 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEAL 28 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999998876
No 8
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=94.38 E-value=0.03 Score=40.65 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.5
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 195 RLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 195 r~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
..||...||++++..|.||++|+.+|
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~L 34 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKAL 34 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999876
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=89.51 E-value=0.23 Score=36.61 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 189 EKSIERRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 189 ~~~~~rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
|+.++....|-.+|.+.|+|||.++++...|+
T Consensus 10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~ 41 (78)
T 1gu4_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLET 41 (78)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34434344445799999999999998876654
No 10
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=86.13 E-value=0.5 Score=35.49 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 188 FEKSIERRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 188 ~~~~~~rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
+|+.++....|-.+|.+.|+|||.++++...|+
T Consensus 9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~ 41 (87)
T 1hjb_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLET 41 (87)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344445555556799999999999998877654
No 11
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=82.94 E-value=1.5 Score=33.36 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=31.5
Q ss_pred CCcchhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 183 RDDNAFEKSIERRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 183 R~~~~~~~~~~rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
+..........|..||-.|||.-|.+.|.||-+.+.+|
T Consensus 51 ~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l 88 (92)
T 1skn_P 51 ESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKM 88 (92)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 44455667778889999999999999999999988765
No 12
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=70.22 E-value=6.5 Score=29.65 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=26.9
Q ss_pred chhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHhhc
Q 027569 186 NAFEKSIERRLRRKIKNRESAARSRARKQVAYNCS 220 (221)
Q Consensus 186 ~~~~~~~~rr~~R~~kNResa~rsR~rKq~~~~e~ 220 (221)
...+...-+-.||-.|||-.|+-.|.||..-..+|
T Consensus 19 s~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~L 53 (90)
T 2wt7_B 19 TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHL 53 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 33445555677888999999999999998776554
No 13
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=63.47 E-value=1.2 Score=30.57 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhcC
Q 027569 206 AARSRARKQVAYNCSY 221 (221)
Q Consensus 206 a~rsR~rKq~~~~e~~ 221 (221)
.--||+-||+|++||+
T Consensus 14 S~LS~~~K~sYi~~L~ 29 (53)
T 1r4g_A 14 SPLSRAEKAAYVKSLS 29 (53)
T ss_dssp SCCCSHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHH
Confidence 3458899999999985
No 14
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=51.82 E-value=4.4 Score=30.08 Aligned_cols=11 Identities=45% Similarity=0.751 Sum_probs=10.2
Q ss_pred ccHHHHHhhhc
Q 027569 49 MNLDELLKSVW 59 (221)
Q Consensus 49 MNmDElLknIw 59 (221)
||||++|++|-
T Consensus 1 ~~~e~~Lr~IP 11 (79)
T 2p22_D 1 MNVEELLRRIP 11 (79)
T ss_dssp CHHHHHHHHSC
T ss_pred CCHHHHHhcCc
Confidence 89999999995
No 15
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=32.96 E-value=10 Score=24.35 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=16.6
Q ss_pred chhhchhccCCchhhhhHHH
Q 027569 86 SLTLARALSGKTVEQVWNEI 105 (221)
Q Consensus 86 SltLp~~ls~KTVDEVWreI 105 (221)
-+++-++||+.|..+.|+-+
T Consensus 7 d~siepPLSQETFsdLW~LL 26 (39)
T 2k8f_B 7 DPSVEPPLSQETFSDLWKLL 26 (39)
T ss_dssp CSSCCCCCSCHHHHHHHHTC
T ss_pred ccccCCCccHHHHHHHHHhC
Confidence 35667799999999999955
No 16
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=30.72 E-value=15 Score=25.56 Aligned_cols=10 Identities=60% Similarity=1.039 Sum_probs=8.8
Q ss_pred cCCchhhhhH
Q 027569 94 SGKTVEQVWN 103 (221)
Q Consensus 94 s~KTVDEVWr 103 (221)
..||||+||-
T Consensus 35 nakTVeGV~a 44 (56)
T 2jws_A 35 NAKTVEGVWT 44 (56)
T ss_dssp TCSCHHHHHH
T ss_pred cccccccccc
Confidence 5799999995
No 17
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=26.37 E-value=18 Score=26.49 Aligned_cols=53 Identities=15% Similarity=-0.045 Sum_probs=28.5
Q ss_pred hhchhccCCchhhhhHHHHhcccccccccccc---CCCCCCccchhhhhHHhhhhh
Q 027569 88 TLARALSGKTVEQVWNEIQQGQKKRYGQEMKS---HQREPTLGELTLEDFLVQAGL 140 (221)
Q Consensus 88 tLp~~ls~KTVDEVWreI~~~~~~~~~~~~~~---~~rQ~TlGEMTLEDFLvrAGv 140 (221)
.||.....=|.+.|+.=|.-......-..... +-....|=.||.|||+.+++.
T Consensus 5 ~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~m~G~~LC~ls~edF~~~~p~ 60 (85)
T 1sv0_A 5 SLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG 60 (85)
T ss_dssp TSCSSGGGCCHHHHHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHSTT
T ss_pred CCCCChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHcCC
Confidence 44555566677888765553221110001100 111235667999999999974
No 18
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.74 E-value=17 Score=27.28 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=30.7
Q ss_pred hhhchhccCCchhhhhHHHHhcccccccccccc----CCCCCCccchhhhhHHhhhhhhh
Q 027569 87 LTLARALSGKTVEQVWNEIQQGQKKRYGQEMKS----HQREPTLGELTLEDFLVQAGLFA 142 (221)
Q Consensus 87 ltLp~~ls~KTVDEVWreI~~~~~~~~~~~~~~----~~rQ~TlGEMTLEDFLvrAGvv~ 142 (221)
+-+|..-..=|.+.|+.=|.-......-..... +-....|=.||.|||+.+++.+.
T Consensus 18 l~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~~~~F~~m~G~~LC~ls~edF~~~~~~~~ 77 (98)
T 1x66_A 18 VIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYN 77 (98)
T ss_dssp CCCCSSGGGCCTTHHHHHHHHHHHHTTCCSCCGGGGTTCCHHHHHHCCHHHHHTTSCHHH
T ss_pred cCCCCChhhcCHHHHHHHHHHHHHhcCCCCCChhhCCCCCHHHHHcCCHHHHHHHcCCCc
Confidence 455666666778888876653221110011111 11123455699999999987643
No 19
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.39 E-value=22 Score=26.62 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.1
Q ss_pred CccchhhhhHHhhhhh
Q 027569 125 TLGELTLEDFLVQAGL 140 (221)
Q Consensus 125 TlGEMTLEDFLvrAGv 140 (221)
.|=.||.|||+.+|+.
T Consensus 59 ~LC~lskedF~~~~p~ 74 (96)
T 2dkx_A 59 ELCAMSEEQFRQRSPL 74 (96)
T ss_dssp HHHHSCHHHHHHHCSS
T ss_pred HHHhCCHHHHHHHcCc
Confidence 4566999999999863
No 20
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=21.61 E-value=20 Score=26.94 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=31.8
Q ss_pred chhhchhccCCchhhhhHHHHhcccccccccccc----CCCCCCccchhhhhHHhhhhhh
Q 027569 86 SLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKS----HQREPTLGELTLEDFLVQAGLF 141 (221)
Q Consensus 86 SltLp~~ls~KTVDEVWreI~~~~~~~~~~~~~~----~~rQ~TlGEMTLEDFLvrAGvv 141 (221)
-+.||..-..=|.+.|+.=|.-......-..... +-....|=.||.|||+.+++.+
T Consensus 20 rl~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~~m~G~~LC~lt~edF~~~~p~~ 79 (97)
T 1sxe_A 20 RVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPSY 79 (97)
T ss_dssp SSSSCSSTTSCCHHHHHHHHHHHHHHHTCSSCCGGGSTTCCHHHHTTCCHHHHTTTSCHH
T ss_pred hhcCCcchhccCHHHHHHHHHHHHHhcCCCCCCHHhcCCCCHHHHHhCCHHHHHHHcCCC
Confidence 3556666677788888876553221110001110 1112356679999999998754
No 21
>4gb3_1 Coat protein 1; capsid protein; HET: PLM MYR; 2.74A {Human coxsackievirus B3} PDB: 1cov_1* 1jew_1 1oop_A* 1mqt_A*
Probab=21.18 E-value=23 Score=31.58 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.1
Q ss_pred CCCccchhhhhHHhhhhhhh
Q 027569 123 EPTLGELTLEDFLVQAGLFA 142 (221)
Q Consensus 123 Q~TlGEMTLEDFLvrAGvv~ 142 (221)
-.+..|+++|.||-|+++|.
T Consensus 56 ~~s~~EtsIEnFlsRsacV~ 75 (281)
T 4gb3_1 56 YHSRSESTIENFLCRSACVY 75 (281)
T ss_dssp CCBCGGGBHHHHHCSCEEEE
T ss_pred cCCcchhhHhhhhhhhhhee
Confidence 35778999999999999874
No 22
>3vbh_A EV71, genome polyprotein, capsid protein VP1; hand-foot-and-mouth disease, enterovirus uncoating, P factor, adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71} PDB: 3vbf_A* 3vbo_A 3vbs_A* 4aed_A* 3vbr_A 3vbu_A
Probab=21.09 E-value=24 Score=31.67 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=17.5
Q ss_pred CCccchhhhhHHhhhhhhhc
Q 027569 124 PTLGELTLEDFLVQAGLFAE 143 (221)
Q Consensus 124 ~TlGEMTLEDFLvrAGvv~e 143 (221)
.+..|++||-||-|+++|..
T Consensus 73 ~s~sEtsIE~Fl~RsacV~~ 92 (297)
T 3vbh_A 73 HSTAETTLDSFFSRAGLVGE 92 (297)
T ss_dssp CBCGGGBHHHHHCSCEEEEE
T ss_pred CCCCcceeeeeeeeeeEEEE
Confidence 57799999999999998753
No 23
>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding protein; 2.32A {Trichomonas vaginalis} SCOP: e.47.1.1 PDB: 1q88_A 1q89_A
Probab=20.94 E-value=42 Score=29.02 Aligned_cols=29 Identities=21% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCchhhhhHHHHhccccccccccccCCCCCCccchhhhhHHhhhh
Q 027569 95 GKTVEQVWNEIQQGQKKRYGQEMKSHQREPTLGELTLEDFLVQAG 139 (221)
Q Consensus 95 ~KTVDEVWreI~~~~~~~~~~~~~~~~rQ~TlGEMTLEDFLvrAG 139 (221)
++-|++.|-+|++. +-|.|+||+|.-+|-
T Consensus 36 k~~vi~iW~eiv~~----------------~~i~~~~~~fI~~aa 64 (221)
T 1q87_A 36 RAKVDEIWFRLTQK----------------TDGTVMRDFLIEKAA 64 (221)
T ss_dssp HHHHHHHHHHHHSS----------------SSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc----------------ccccccHHHHHHHHH
Confidence 45689999999854 334689999987775
No 24
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=20.67 E-value=30 Score=26.54 Aligned_cols=55 Identities=18% Similarity=0.038 Sum_probs=29.2
Q ss_pred hhhchhccCCchhhhhHHHHhcccccccccccc---CCCCCCccchhhhhHHhhhhhh
Q 027569 87 LTLARALSGKTVEQVWNEIQQGQKKRYGQEMKS---HQREPTLGELTLEDFLVQAGLF 141 (221)
Q Consensus 87 ltLp~~ls~KTVDEVWreI~~~~~~~~~~~~~~---~~rQ~TlGEMTLEDFLvrAGvv 141 (221)
+.||..-..=|.+.|+.=|.-......-.+... +-....|=.||.|||+.+|+.+
T Consensus 35 l~ip~DP~~WS~~~V~~WL~W~~~ef~L~~v~~~~F~m~G~~LC~ls~edF~~~~p~~ 92 (110)
T 2jv3_A 35 LGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPDF 92 (110)
T ss_dssp TTCCSSSTTCCHHHHHHHHHHHHHHHTCCCCCTTTTCCCHHHHHHTHHHHHHHHSCHH
T ss_pred hCCCCChHhCCHHHHHHHHHHHHHhcCCCCCChhcCCCCHHHHHhCCHHHHHHHcCCC
Confidence 445555566677788765542211100001110 1112345569999999999863
No 25
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.34 E-value=25 Score=27.80 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=32.0
Q ss_pred hhhchhccCCchhhhhHHHHhccccccccccc---c-CCCCCCccchhhhhHHhhhhhhh
Q 027569 87 LTLARALSGKTVEQVWNEIQQGQKKRYGQEMK---S-HQREPTLGELTLEDFLVQAGLFA 142 (221)
Q Consensus 87 ltLp~~ls~KTVDEVWreI~~~~~~~~~~~~~---~-~~rQ~TlGEMTLEDFLvrAGvv~ 142 (221)
+-+|..-..=|.+.||.=|.-......-.... - .-....|=.||.|||+.+++.+.
T Consensus 32 l~IP~DP~~WS~~~V~~WL~Wa~~ef~L~~id~~~Fq~mnGk~LC~LskeDF~~~~p~~~ 91 (128)
T 2ytu_A 32 VIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYN 91 (128)
T ss_dssp CSCCSCGGGCCTTHHHHHHHHHHHHTCCCSCCCGGGSSCCTTHHHHCCHHHHHHHSCHHH
T ss_pred ccCCcchhhCCHHHHHHHHHHHHHhcCCCCCChHhCCCCCHHHHHcCCHHHHHHHcCCCc
Confidence 45666666777888887665322111001111 1 11234566799999999997643
Done!