Query 027569
Match_columns 221
No_of_seqs 170 out of 357
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 20:11:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027569.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027569hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r4ga_ a.8.5.1 (A:) RNA polym 57.1 0.87 6.3E-05 29.7 -0.4 17 205-221 13-29 (53)
2 d1q88a_ e.47.1.1 (A:) 39 kda i 39.3 6.2 0.00045 31.5 1.9 28 96-139 16-43 (192)
3 d1pvc1_ b.121.4.1 (1:) Poliovi 37.0 3.9 0.00029 34.5 0.4 21 123-143 46-66 (279)
4 d1hnra_ a.155.1.1 (A:) H1 prot 31.7 3.8 0.00028 25.9 -0.4 9 129-137 38-46 (47)
5 d1v5ra1 d.82.4.1 (A:7-91) Grow 31.1 5.9 0.00043 27.9 0.5 15 126-140 56-70 (85)
6 d1aym1_ b.121.4.1 (1:) Rhinovi 30.3 5.9 0.00043 33.4 0.4 20 123-142 59-78 (285)
7 d1fpn1_ b.121.4.1 (1:) Rhinovi 28.9 6.4 0.00047 33.0 0.4 21 123-143 45-65 (269)
8 d1bev1_ b.121.4.1 (1:) Bovine 28.4 6.6 0.00048 32.8 0.4 21 123-143 50-70 (268)
9 d2vqca1 a.4.5.78 (A:4-73) F-11 27.3 8.2 0.0006 25.8 0.7 15 126-140 18-32 (70)
10 d1d4m1_ b.121.4.1 (1:) Human e 26.8 7.5 0.00055 32.8 0.5 21 123-143 56-76 (284)
11 d1ncqa_ b.121.4.1 (A:) Rhinovi 24.4 7.7 0.00056 32.5 0.1 21 123-143 43-63 (273)
12 d1ev11_ b.121.4.1 (1:) Human e 23.6 8.7 0.00064 32.2 0.3 20 123-142 56-75 (281)
13 d1r1a1_ b.121.4.1 (1:) Rhinovi 23.1 8.8 0.00064 32.2 0.2 20 123-142 55-74 (283)
14 d1oopa_ b.121.4.1 (A:) Swine v 23.0 9.8 0.00071 31.8 0.5 21 123-143 44-64 (271)
15 d1qasa1 a.39.1.7 (A:205-298) P 21.7 17 0.0012 24.4 1.5 13 95-107 7-19 (94)
16 d2pg4a1 a.4.5.48 (A:1-92) Unch 20.0 14 0.001 25.5 0.8 17 129-145 48-64 (92)
No 1
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=57.09 E-value=0.87 Score=29.68 Aligned_cols=17 Identities=29% Similarity=0.155 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhcC
Q 027569 205 SAARSRARKQVAYNCSY 221 (221)
Q Consensus 205 sa~rsR~rKq~~~~e~~ 221 (221)
+.--||.-||+|++||+
T Consensus 13 nS~LS~~~K~aYi~~L~ 29 (53)
T d1r4ga_ 13 SSPLSRAEKAAYVKSLS 29 (53)
T ss_dssp TSCCCSHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHH
Confidence 34468899999999984
No 2
>d1q88a_ e.47.1.1 (A:) 39 kda initiator binding protein, IBP39, C-terminal domains {Trichomonas vaginalis [TaxId: 5722]}
Probab=39.28 E-value=6.2 Score=31.50 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=22.1
Q ss_pred CchhhhhHHHHhccccccccccccCCCCCCccchhhhhHHhhhh
Q 027569 96 KTVEQVWNEIQQGQKKRYGQEMKSHQREPTLGELTLEDFLVQAG 139 (221)
Q Consensus 96 KTVDEVWreI~~~~~~~~~~~~~~~~rQ~TlGEMTLEDFLvrAG 139 (221)
.-|++.|-+|.+. +-|.|++|+|.-+|.
T Consensus 16 ~~~~~~~~~l~q~----------------~~~~~~~d~fI~~aA 43 (192)
T d1q88a_ 16 AKVDEIWFRLTQK----------------TDGTVMRDFLIEKAA 43 (192)
T ss_dssp HHHHHHHHHHHSS----------------SSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----------------cCCceeHHHHHHHHH
Confidence 3588999999643 456799999988886
No 3
>d1pvc1_ b.121.4.1 (1:) Poliovirus coat proteins {Poliovirus type 3, strain Sabin [TaxId: 12086]}
Probab=36.99 E-value=3.9 Score=34.50 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.2
Q ss_pred CCCccchhhhhHHhhhhhhhc
Q 027569 123 EPTLGELTLEDFLVQAGLFAE 143 (221)
Q Consensus 123 Q~TlGEMTLEDFLvrAGvv~e 143 (221)
..+.-|++||.||-||++|-.
T Consensus 46 ~hsrsEtsIEnFl~RsacV~~ 66 (279)
T d1pvc1_ 46 RRSRSESTIESFFARGACVAI 66 (279)
T ss_dssp CCBCGGGBHHHHHCSCEEEEE
T ss_pred ccCcchhhHHHhhccceEEEE
Confidence 467889999999999999854
No 4
>d1hnra_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=31.66 E-value=3.8 Score=25.91 Aligned_cols=9 Identities=44% Similarity=0.977 Sum_probs=7.4
Q ss_pred hhhhhHHhh
Q 027569 129 LTLEDFLVQ 137 (221)
Q Consensus 129 MTLEDFLvr 137 (221)
-+|||||++
T Consensus 38 ksledflIk 46 (47)
T d1hnra_ 38 KSLDDFLIK 46 (47)
T ss_dssp CSGGGTBCC
T ss_pred CCHHHHccc
Confidence 389999985
No 5
>d1v5ra1 d.82.4.1 (A:7-91) Growth-arrest-specific protein 2, GAS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.11 E-value=5.9 Score=27.94 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=12.3
Q ss_pred ccchhhhhHHhhhhh
Q 027569 126 LGELTLEDFLVQAGL 140 (221)
Q Consensus 126 lGEMTLEDFLvrAGv 140 (221)
-|=||||+||.|.--
T Consensus 56 GGw~~L~efL~k~dP 70 (85)
T d1v5ra1 56 GGWETFAGYLLKHDP 70 (85)
T ss_dssp TEEEEHHHHHHHHCH
T ss_pred CcHHHHHHHHHhcCh
Confidence 467999999999743
No 6
>d1aym1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]}
Probab=30.32 E-value=5.9 Score=33.41 Aligned_cols=20 Identities=35% Similarity=0.601 Sum_probs=17.8
Q ss_pred CCCccchhhhhHHhhhhhhh
Q 027569 123 EPTLGELTLEDFLVQAGLFA 142 (221)
Q Consensus 123 Q~TlGEMTLEDFLvrAGvv~ 142 (221)
..+..|++||-||-|+++|-
T Consensus 59 ~hs~sEtsIE~F~~RsacV~ 78 (285)
T d1aym1_ 59 SQTLDEMSVESFLGRSGCIH 78 (285)
T ss_dssp CCBCGGGBHHHHHCSCEEEE
T ss_pred cCCcccchHHHHhhhhheeE
Confidence 46889999999999999884
No 7
>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A 2 (HRV-2) [TaxId: 12130]}
Probab=28.88 E-value=6.4 Score=32.96 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=17.9
Q ss_pred CCCccchhhhhHHhhhhhhhc
Q 027569 123 EPTLGELTLEDFLVQAGLFAE 143 (221)
Q Consensus 123 Q~TlGEMTLEDFLvrAGvv~e 143 (221)
..+.-|+++|.||-||++|-.
T Consensus 45 ~~s~sEtsIE~F~gRsacV~~ 65 (269)
T d1fpn1_ 45 SQTRDEMSLESFLGRSGCIHE 65 (269)
T ss_dssp CCBCGGGBHHHHHCSCEEEEE
T ss_pred ccCccceehHhhhcceeEEEE
Confidence 357789999999999999843
No 8
>d1bev1_ b.121.4.1 (1:) Bovine enterovirus coat proteins {Bovine enterovirus, VG-5-27 [TaxId: 12064]}
Probab=28.38 E-value=6.6 Score=32.82 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=18.3
Q ss_pred CCCccchhhhhHHhhhhhhhc
Q 027569 123 EPTLGELTLEDFLVQAGLFAE 143 (221)
Q Consensus 123 Q~TlGEMTLEDFLvrAGvv~e 143 (221)
..+..|+++|.||-|+|+|..
T Consensus 50 ~hs~sEtsIE~F~~RsacV~~ 70 (268)
T d1bev1_ 50 THGIHETSVESFFGRSSLVGM 70 (268)
T ss_dssp CCBCGGGBHHHHHCSCEEEEC
T ss_pred ccCCccccHHHHhhhhheeeE
Confidence 467899999999999998864
No 9
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=27.26 E-value=8.2 Score=25.77 Aligned_cols=15 Identities=60% Similarity=0.764 Sum_probs=11.8
Q ss_pred ccchhhhhHHhhhhh
Q 027569 126 LGELTLEDFLVQAGL 140 (221)
Q Consensus 126 lGEMTLEDFLvrAGv 140 (221)
-||+||||.|+.-.+
T Consensus 18 k~e~~ledilaqfei 32 (70)
T d2vqca1 18 KGELTLEDILAQFEI 32 (70)
T ss_dssp HSEECHHHHHHHHCC
T ss_pred cCcccHHHHHHHhee
Confidence 378999999987543
No 10
>d1d4m1_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human coxsackievirus A9 [TaxId: 12067]}
Probab=26.80 E-value=7.5 Score=32.77 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=17.8
Q ss_pred CCCccchhhhhHHhhhhhhhc
Q 027569 123 EPTLGELTLEDFLVQAGLFAE 143 (221)
Q Consensus 123 Q~TlGEMTLEDFLvrAGvv~e 143 (221)
..+.-|+++|.||-|+++|-.
T Consensus 56 ~hs~sEtsIE~FlgRsacV~~ 76 (284)
T d1d4m1_ 56 YHSRSESTVENFLGRSACVYM 76 (284)
T ss_dssp CCCCGGGBHHHHHCSCEEEEE
T ss_pred ccCcchhhHHHHhhhhheeEE
Confidence 357789999999999999753
No 11
>d1ncqa_ b.121.4.1 (A:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14) [TaxId: 12131]}
Probab=24.44 E-value=7.7 Score=32.46 Aligned_cols=21 Identities=24% Similarity=0.091 Sum_probs=17.9
Q ss_pred CCCccchhhhhHHhhhhhhhc
Q 027569 123 EPTLGELTLEDFLVQAGLFAE 143 (221)
Q Consensus 123 Q~TlGEMTLEDFLvrAGvv~e 143 (221)
-.+.-|++||-||-|+|+|-.
T Consensus 43 ~~s~sETsiE~F~~Rsa~V~~ 63 (273)
T d1ncqa_ 43 HFNGSETDVECFLGRAACVHV 63 (273)
T ss_dssp CCCCGGGBHHHHSCSCEEEEE
T ss_pred CCCCcccchhhhhhhhheEEE
Confidence 357889999999999998754
No 12
>d1ev11_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human echovirus 1 [TaxId: 46633]}
Probab=23.64 E-value=8.7 Score=32.23 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.2
Q ss_pred CCCccchhhhhHHhhhhhhh
Q 027569 123 EPTLGELTLEDFLVQAGLFA 142 (221)
Q Consensus 123 Q~TlGEMTLEDFLvrAGvv~ 142 (221)
-.+..|++||-||-|+++|.
T Consensus 56 ~~s~sEtsiE~F~~RsacV~ 75 (281)
T d1ev11_ 56 NHVRSESTIENFLARSACVF 75 (281)
T ss_dssp CCBCCTTBHHHHHCSCEEEE
T ss_pred cCCccccchhhhhccceeEE
Confidence 35788999999999999774
No 13
>d1r1a1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A 1A (HRV-1A) [TaxId: 12134]}
Probab=23.06 E-value=8.8 Score=32.21 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=17.5
Q ss_pred CCCccchhhhhHHhhhhhhh
Q 027569 123 EPTLGELTLEDFLVQAGLFA 142 (221)
Q Consensus 123 Q~TlGEMTLEDFLvrAGvv~ 142 (221)
..+..|++||-||-|+++|-
T Consensus 55 ~~s~sETsIE~F~~Rsa~V~ 74 (283)
T d1r1a1_ 55 SQTRDEMSIESFLGRSGCVH 74 (283)
T ss_dssp CCBCSSSSHHHHHCSCEEEE
T ss_pred cCCcccchHHHhhcceeeEE
Confidence 46789999999999999873
No 14
>d1oopa_ b.121.4.1 (A:) Swine vesicular disease virus coat proteins {Swine vesicular disease virus [TaxId: 12075]}
Probab=22.97 E-value=9.8 Score=31.77 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.7
Q ss_pred CCCccchhhhhHHhhhhhhhc
Q 027569 123 EPTLGELTLEDFLVQAGLFAE 143 (221)
Q Consensus 123 Q~TlGEMTLEDFLvrAGvv~e 143 (221)
-.+.-|++||.||-|+++|-.
T Consensus 44 ~hs~sETsIE~F~~RsacV~~ 64 (271)
T d1oopa_ 44 YHSRSESTVENFLCRSACVFY 64 (271)
T ss_dssp CCCCGGGBHHHHHCSCEEEEE
T ss_pred cCCccccchhhhhhhhheeEE
Confidence 357789999999999998753
No 15
>d1qasa1 a.39.1.7 (A:205-298) Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.75 E-value=17 Score=24.42 Aligned_cols=13 Identities=8% Similarity=0.309 Sum_probs=10.1
Q ss_pred CCchhhhhHHHHh
Q 027569 95 GKTVEQVWNEIQQ 107 (221)
Q Consensus 95 ~KTVDEVWreI~~ 107 (221)
++.|++||+.+..
T Consensus 7 R~ei~~if~~ys~ 19 (94)
T d1qasa1 7 RAEIDRAFEEAAG 19 (94)
T ss_dssp CHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhC
Confidence 5578999998853
No 16
>d2pg4a1 a.4.5.48 (A:1-92) Uncharacterized protein APE0880.1 {Aeropyrum pernix [TaxId: 56636]}
Probab=20.01 E-value=14 Score=25.46 Aligned_cols=17 Identities=41% Similarity=0.683 Sum_probs=15.2
Q ss_pred hhhhhHHhhhhhhhccc
Q 027569 129 LTLEDFLVQAGLFAEAS 145 (221)
Q Consensus 129 MTLEDFLvrAGvv~e~~ 145 (221)
|-|.|-|+|||.|.|..
T Consensus 48 mglkdrliraglvkeet 64 (92)
T d2pg4a1 48 MGLKDRLIRAGLVKEET 64 (92)
T ss_dssp TTHHHHHHHTTSEEEEE
T ss_pred hhhHHHHHHhhhhhHhH
Confidence 88999999999998854
Done!