BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027572
MTINLGGITSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGS
VTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASH
HISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIR
AKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTVELL

High Scoring Gene Products

Symbol, full name Information P value
AT1G74530 protein from Arabidopsis thaliana 8.2e-67

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027572
        (221 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2019230 - symbol:AT1G74530 "AT1G74530" species...   679  8.2e-67   1


>TAIR|locus:2019230 [details] [associations]
            symbol:AT1G74530 "AT1G74530" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002684 EMBL:AK229075 IPI:IPI00657534
            RefSeq:NP_001031281.1 UniGene:At.34873 PaxDb:Q0WPJ3 PRIDE:Q0WPJ3
            EnsemblPlants:AT1G74530.3 GeneID:843794 KEGG:ath:AT1G74530
            TAIR:At1g74530 eggNOG:NOG311420 OMA:SELWYVE PhylomeDB:Q0WPJ3
            ProtClustDB:CLSN2680648 Genevestigator:Q0WPJ3 Uniprot:Q0WPJ3
        Length = 314

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 130/209 (62%), Positives = 156/209 (74%)

Query:     9 TSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAA 68
             +S S +   E+  RLY+KM +DL ++G  FLKQGETSQSL LSD+FTLKDG + PV K A
Sbjct:    46 SSDSFVSYAEQSTRLYNKMEQDLQENGPVFLKQGETSQSLSLSDLFTLKDGKIAPVLKVA 105

Query:    69 NPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPXX 128
             NPPVRANVL+LS +YSVP+ + VK +FSP+F+  IWFQ+S +YHFSMFHAS+HI  VP  
Sbjct:   106 NPPVRANVLHLSTEYSVPVLEVVKNVFSPYFENTIWFQDSKMYHFSMFHASNHIFSVPAT 165

Query:   129 XXXXXXXXXXXXXXXXDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALP 188
                             +LCPL+I+LDRV+LTSTGVLLGCW+V SG DP+TIR KLR+ LP
Sbjct:   166 EVEVEAEAAAVKAVAKELCPLEIILDRVLLTSTGVLLGCWKVNSGDDPITIRLKLRSVLP 225

Query:   189 NAPEKQLYDPAILHTSFARLLGHPRASPT 217
              APEKQLYD AILHTS ARLLG P  SPT
Sbjct:   226 RAPEKQLYDAAILHTSLARLLGPP-ISPT 253


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      221       203   0.00092  111 3  11 22  0.45    32
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  164 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.35u 0.09s 17.44t   Elapsed:  00:00:00
  Total cpu time:  17.35u 0.09s 17.44t   Elapsed:  00:00:00
  Start:  Fri May 10 23:13:37 2013   End:  Fri May 10 23:13:37 2013

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