BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027572
         (221 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C6DAW7|ARNB_PECCP UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
           OS=Pectobacterium carotovorum subsp. carotovorum (strain
           PC1) GN=arnB PE=3 SV=1
          Length = 382

 Score = 32.3 bits (72), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 54  FTLKDGSVTPVHKAANPPVRANVLYLSPKYSVP-ISDAVKRIFSPHFDKVIWFQNSSLYH 112
            T K  ++ PVH A  P     +  LS +Y +P I DA   + + + D+ I  + ++++ 
Sbjct: 118 ITPKTKAIIPVHYAGAPADLTALRTLSERYGIPLIEDAAHAVGTQYRDEWIGARGTAIFS 177

Query: 113 FSMFHASHHISPVPA----TEDEIEAE 135
              FHA  +I+        T+DE  AE
Sbjct: 178 ---FHAIKNITCAEGGMVVTDDEALAE 201


>sp|A4SQW7|ARNB_AERS4 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
           OS=Aeromonas salmonicida (strain A449) GN=arnB PE=3 SV=1
          Length = 378

 Score = 32.3 bits (72), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 49  LLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVP-ISDAVKRIFSPHFDKVIWFQN 107
           L++ + T+   ++ PVH A  P     +L L+ +Y +P I DA   I + + D+ I    
Sbjct: 113 LIAPLITVNTKAIIPVHYAGAPVDLDPILKLARQYDIPVIEDAAHAIGTRYRDRWIGATG 172

Query: 108 SSLYHF 113
           ++++ F
Sbjct: 173 TAIFSF 178


>sp|B9LS40|VATF_HALLT V-type ATP synthase subunit F OS=Halorubrum lacusprofundi (strain
          ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=atpF
          PE=3 SV=1
          Length = 109

 Score = 31.6 bits (70), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 5  LGGITSHSHIPNGERRARLYDKMARDLDDHGAAFL 39
          L G+    +IP+ E+  RL D + R LDD G   +
Sbjct: 19 LAGVRKFENIPDDEKDERLDDAVERTLDDEGTGII 53


>sp|B8DRU2|RLMN_DESVM Dual-specificity RNA methyltransferase RlmN OS=Desulfovibrio
           vulgaris (strain Miyazaki F / DSM 19637) GN=rlmN PE=3
           SV=1
          Length = 367

 Score = 31.6 bits (70), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 10/103 (9%)

Query: 13  HIPNGERRARLYDKMAR-DLDDHGAAF----LKQGE--TSQSLLLSDIFTLKDGSVTPVH 65
           H PN E RAR+  + AR  LDD  AA     LK  E  T + LLL  +    D +   V 
Sbjct: 225 HAPNQEVRARIMPRAARWTLDDLMAALESYPLKTRERITFEYLLLGGVNDSIDHARELVR 284

Query: 66  KAANPPVRANVLYLSPKYSVPI-SDAVKRIFSPHFDKVIWFQN 107
             +    + N++  +P   +P  + +  RI +  F++ +W +N
Sbjct: 285 LVSRTKAKLNLIVYNPAEGLPYEAPSQARILA--FEQYLWSKN 325


>sp|Q8QZ73|POLN_MAYAB Non-structural polyprotein OS=Mayaro virus (strain Brazil) PE=2 SV=2
          Length = 2436

 Score = 30.8 bits (68), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 41   QGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPI 87
            Q    +++  + I  LK GS   V  AA+  V  +V Y  P+YSVP+
Sbjct: 1890 QSRKVENMKATIIDRLKQGSAYYVSAAADKAVTYHVRYAKPRYSVPV 1936


>sp|A2ST15|PRIS_METLZ Probable DNA primase small subunit OS=Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z) GN=priA PE=3 SV=1
          Length = 380

 Score = 30.4 bits (67), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 36  AAFLKQGETSQSLLLSD-IFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRI 94
           A FLK    +Q+LL S+    L +  V  +  A N P +A +L  + +   P++  VKR+
Sbjct: 235 AGFLKNISQTQNLLKSNPEKLLANKVVRAIANAENEPFQAGILSRAAQADEPVTTDVKRL 294

Query: 95  FSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEA 134
                          + H    H    +  VP + D+++A
Sbjct: 295 ---------------IRHPGSLHGGSGMRVVPISVDQLDA 319


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,670,812
Number of Sequences: 539616
Number of extensions: 3332245
Number of successful extensions: 8275
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8273
Number of HSP's gapped (non-prelim): 9
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)