Query 027572
Match_columns 221
No_of_seqs 29 out of 31
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 20:16:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vgj_A Hypothetical protein PH 97.9 8.1E-05 2.8E-09 58.8 9.3 125 75-212 5-135 (184)
2 2vfk_A AKAP18 delta; APO, hydr 97.6 0.0003 1E-08 56.7 9.4 130 71-210 2-145 (205)
3 2d4g_A Hypothetical protein BS 97.2 0.0009 3.1E-08 52.3 6.9 118 75-211 5-124 (171)
4 1jh6_A Cyclic phosphodiesteras 96.7 0.0059 2E-07 49.5 8.0 119 69-208 5-125 (189)
5 1iuh_A 2'-5' RNA ligase; riken 96.7 0.0059 2E-07 49.5 7.8 124 75-212 5-140 (198)
6 2fsq_A ATU0111 protein; alpha- 93.3 0.22 7.4E-06 43.6 7.3 152 50-212 27-190 (243)
7 1tol_A G3P - TOLA, protein (fu 29.3 30 0.001 29.9 2.6 68 129-197 126-202 (222)
8 3k12_A Uncharacterized protein 27.0 28 0.00095 26.3 1.8 38 2-39 20-58 (122)
9 3kjj_A NMB1025 protein; YJGF p 22.8 46 0.0016 25.5 2.4 37 2-39 29-66 (128)
10 3me7_A Putative uncharacterize 21.6 1.7E+02 0.0058 22.0 5.4 38 155-193 130-167 (170)
11 3gtz_A Putative translation in 21.3 39 0.0013 25.6 1.7 36 2-38 23-59 (124)
No 1
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=97.85 E-value=8.1e-05 Score=58.79 Aligned_cols=125 Identities=11% Similarity=0.113 Sum_probs=85.1
Q ss_pred EEeecCcccchHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEe
Q 027572 75 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD 154 (221)
Q Consensus 75 ~Vl~l~~~~a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi~~~le 154 (221)
+.+++|+++.+.+.+.-+++. +. +..+...+|+.+|+|+..-.. .+++++++=.++++++++..-|+.+.++
T Consensus 5 ial~~p~~~~~~l~~~~~~l~-~~-~~~~~~v~~~~lHiTL~flg~------~~~~~~~~l~~~l~~~~~~~~pf~l~l~ 76 (184)
T 1vgj_A 5 IAIDVNESVRDSLVRAQDYIG-SK-EAKIKFVERENLHITLKFLGE------ITEEQAEEIKNILKKIAEKYKKHEVKVK 76 (184)
T ss_dssp EEEECCHHHHHHHHHHHHHHC-SS-SEEEEECCGGGCEEEEEEEES------CCHHHHHHHHHHHHHHHTTSBCEEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHHh-hc-CCCcEecCccccEEEEEeecC------CCHHHHHHHHHHHHHHHccCCCeEEEEe
Confidence 456777777777766666654 22 324555688889999975432 2345566666788888888899999999
Q ss_pred EEEEcCC----cceEEeeeecCCCChHHHHHHHHHhCCCC--CccCccCceeeeehhhhhcCCC
Q 027572 155 RVILTST----GVLLGCWQVISGTDPMTIRAKLRTALPNA--PEKQLYDPAILHTSFARLLGHP 212 (221)
Q Consensus 155 RVV~tss----GvlL~cwqv~~g~dp~~iR~~Lr~alP~A--P~kQ~~d~~IlHtTlaRlL~Pp 212 (221)
.+-.=+. +||-+ .+..+.....|++++++++... +... +..-|.||||...+.
T Consensus 77 g~g~F~~~~~p~vl~~--~v~~~~~L~~L~~~l~~~l~~~g~~~~~---~f~PHiTLar~~~~~ 135 (184)
T 1vgj_A 77 GIGVFPNPNYIRVIWA--GIENDEIIREMAREIEDELAKLGFKKEG---NFVAHITLGRVKFVK 135 (184)
T ss_dssp EEEEEECSSSEEEEEE--EEETCHHHHHHHHHHHHHHHTTTCCCCC---CCCCEEEEEEEEEES
T ss_pred eEeeCCCCCCCcEEEE--EecCCHHHHHHHHHHHHHHHHcCCCCCC---CccceEEEEeecccC
Confidence 9876554 23322 2555555688999998887543 2222 678899999987644
No 2
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=97.62 E-value=0.0003 Score=56.70 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=83.5
Q ss_pred CeEEEE-eecCc-ccchHHHHHHHHhcCCCCC-ceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhc-
Q 027572 71 PVRANV-LYLSP-KYSVPISDAVKRIFSPHFD-KVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDL- 146 (221)
Q Consensus 71 pVRa~V-l~l~~-~~a~~i~~av~~~l~p~~d-~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~- 146 (221)
+.|+-+ +++|+ ++.+.|.+.-+++..-..+ ..-|+ +++.+|+|+.--.- .+++++++=.+++++++...
T Consensus 2 ~~r~Fial~~~~~~~~~~l~~~~~~l~~~~~~~~~~~v-~~~~~HiTL~flg~------~~~~~~~~l~~~l~~~~~~~~ 74 (205)
T 2vfk_A 2 QPNYFLSIPITNKKITAGIKVLQNSILRQDNRLTKAMV-GDGSFHITLLVMQL------LNEDEVNIGTDALLELKPFVE 74 (205)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHHHHHHCGGGGGGBC-CTTCCEEEEEEECC------CSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHHHhcCcchHHHhC-CcCccEEEEEEEEc------CCHHHHHHHHHHHHHHHHHHH
Confidence 356666 78887 6777777666665421011 12354 57789999964422 23455555566677766655
Q ss_pred -----CcceEEEeEEEEcCCcceEEeeeecCC---CChHHHHHHHHHhCCCCC--ccCccCceeeeehhhhhcC
Q 027572 147 -----CPLKIVLDRVILTSTGVLLGCWQVISG---TDPMTIRAKLRTALPNAP--EKQLYDPAILHTSFARLLG 210 (221)
Q Consensus 147 -----cPi~~~leRVV~tssGvlL~cwqv~~g---~dp~~iR~~Lr~alP~AP--~kQ~~d~~IlHtTlaRlL~ 210 (221)
-|+.+.++.+-.=+.+||-+. +..+ .....|+++++++|..+- .++ ..+..-|.||||.-.
T Consensus 75 ~~~~~~pf~l~l~g~~~F~~~vl~~~--v~~~~~~~~L~~L~~~l~~~~~~~g~~~~~-~~~f~PHiTlar~~~ 145 (205)
T 2vfk_A 75 EILEGKHLTLPFHGIGTFQGQVGFVK--LADGDHVSALLEIAETAKRTFQEKGILAGE-SRTFKPHLTFMKLSK 145 (205)
T ss_dssp HHTTTSCCEEEEEEEEEETTTEEEEE--ECCSHHHHHHHHHHHHHHHHHHTTTCCBCC-SSCCCCCEEEEEGGG
T ss_pred HHhCCCCcEEEEechhhCCCcEEEEe--ecccccHHHHHHHHHHHHHHHHHcCCCcCC-CCCcceEEEEEeccc
Confidence 899999999977766655333 3333 246888888888865432 111 256889999999874
No 3
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=97.17 E-value=0.0009 Score=52.26 Aligned_cols=118 Identities=17% Similarity=0.203 Sum_probs=78.5
Q ss_pred EEeecCcccchHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEe
Q 027572 75 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD 154 (221)
Q Consensus 75 ~Vl~l~~~~a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi~~~le 154 (221)
+.+.+|++..+.|.+.-+++ .+ ..-|+.+ |+|+..-.. ..+.++++=.+++++++++.-|+++.++
T Consensus 5 iai~~~~~~~~~l~~~~~~~-~~---~~~~v~p----HiTL~f~g~------~~~~~~~~l~~~l~~~~~~~~pf~l~l~ 70 (171)
T 2d4g_A 5 IVLFPSKKLQDLANSYRKRY-DP---SYSLIPP----HLTLRASFE------CAEEKADQLVSHLRNIAKESHPLVLKMT 70 (171)
T ss_dssp EEBCCCHHHHHHHHHHHHHH-CG---GGGTSCS----CBCCSSCEE------CCGGGHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHh-Cc---ccCCCCC----eEEeecCCc------CChHHHHHHHHHHHHHHccCCCEEEEEC
Confidence 44566777777776665554 33 1226544 999975432 1233455556788888889999999999
Q ss_pred EEEEcCCc--ceEEeeeecCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhhcCC
Q 027572 155 RVILTSTG--VLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGH 211 (221)
Q Consensus 155 RVV~tssG--vlL~cwqv~~g~dp~~iR~~Lr~alP~AP~kQ~~d~~IlHtTlaRlL~P 211 (221)
++-.-+.+ |+.+ .+........|++++++++...+.+ .+..-|-||||...+
T Consensus 71 ~~g~F~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~~~~---~~f~PHiTLar~~~~ 124 (171)
T 2d4g_A 71 KYSSFAPVNNVIYI--KAEPTEELKTLNEKLYTGVLAGEQE---YNFVPHVTVGQNLSD 124 (171)
T ss_dssp EEEECTTTCCCEEE--EECCCHHHHHHHHHTTSGGGCSCCC---SCCCCEEEEECSCCH
T ss_pred CcEEeCCCCcEEEE--EccCChHHHHHHHHHHhcccccccC---CCCCCeEEeecCCCH
Confidence 98776533 4433 2444445689999999998765433 357889999997653
No 4
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=96.69 E-value=0.0059 Score=49.51 Aligned_cols=119 Identities=12% Similarity=0.062 Sum_probs=78.0
Q ss_pred CCCeEEEEeecCcccchHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCc
Q 027572 69 NPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCP 148 (221)
Q Consensus 69 ~~pVRa~Vl~l~~~~a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cP 148 (221)
+..-|++++..|+++.+.+.+..+++-. .. |. ++..+|+|+ +.+++...+ .=.+++++++++..|
T Consensus 5 ~~~~~~f~~~pp~~~~~~l~~~~~~l~~-~~----~~-~~~~~HiTL------lG~~~~~~~---~l~~~L~~~a~~~~p 69 (189)
T 1jh6_A 5 KKDVYSVWALPDEESEPRFKKLMEALRS-EF----TG-PRFVPHVTV------AVSAYLTAD---EAKKMFESACDGLKA 69 (189)
T ss_dssp CCEEEEEEEEECTTTHHHHHHHHHHHHH-HH----TC-CCCCCCEEE------EEEEEECHH---HHHHHHHHHHHTCBC
T ss_pred CCCcEEEEEECCHHHHHHHHHHHHHHHH-Hc----CC-CCCCCEEEE------eCCCCCCHH---HHHHHHHHHHhhCCC
Confidence 3456788876688777777776655521 11 22 678899999 233333333 335677788888899
Q ss_pred ceEEEeEEEE--cCCcceEEeeeecCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhh
Q 027572 149 LKIVLDRVIL--TSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARL 208 (221)
Q Consensus 149 i~~~leRVV~--tssGvlL~cwqv~~g~dp~~iR~~Lr~alP~AP~kQ~~d~~IlHtTlaRl 208 (221)
+.+.++.+=. ..-.||-+- |..+.+...|.+++++++...|.+ +..=|.||||.
T Consensus 70 f~l~l~g~g~~~~~~rvlw~~--v~~~~~L~~L~~~v~~~~g~~~~~----~f~PHlTLar~ 125 (189)
T 1jh6_A 70 YTATVDRVSTGTFFFQCVFLL--LQTTPEVMEAGEHCKNHFNCSTTT----PYMPHLSLLYA 125 (189)
T ss_dssp EEEEEEEEEEEEETTEEEEEE--ECCCHHHHHHHHHHHHHTTCCCCS----CCCCEEEEECC
T ss_pred eEEEEcceeccCccceEEEEe--ecCCHHHHHHHHHHHHHhCCCCCC----CCCCeEEEEEe
Confidence 9999999865 112232222 334445688999999998665543 57889999985
No 5
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=96.66 E-value=0.0059 Score=49.52 Aligned_cols=124 Identities=14% Similarity=0.180 Sum_probs=77.7
Q ss_pred EEeecCcccchHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEe
Q 027572 75 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD 154 (221)
Q Consensus 75 ~Vl~l~~~~a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~dP~pat~~e~~~E~~av~~v~~~~cPi~~~le 154 (221)
+.+.+|+++.+.|.+.-+++- ... +.=|+. ++.+|+|+..-.. ..++++++=.++++++++..-|+.+.++
T Consensus 5 ial~~p~~~~~~l~~~~~~l~-~~~-~~r~v~-~~~~HiTL~flge------v~~~~~~~l~~~l~~~~~~~~pf~l~l~ 75 (198)
T 1iuh_A 5 YAVFLPEEVRAALVEAQTKVR-PFR-GWKPVP-PHQLHLTLLFLGE------RPEEELPDYLALGHRLARLEAPFRARLR 75 (198)
T ss_dssp EEEECCHHHHHHHHHHHGGGT-TCT-TEEECC-GGGCEEEEEEEEE------CCGGGHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHhh-hhc-CCcccC-CCCCEEEEEeCCc------CCHHHHHHHHHHHHHHhccCCCeEEEEc
Confidence 455777776667765554442 211 222655 7779999964322 2234555556788888888999999999
Q ss_pred EEEEcCC----cceEEeeeecCCCChHHHHHHHHHhCCCC--------CccCccCceeeeehhhhhcCCC
Q 027572 155 RVILTST----GVLLGCWQVISGTDPMTIRAKLRTALPNA--------PEKQLYDPAILHTSFARLLGHP 212 (221)
Q Consensus 155 RVV~tss----GvlL~cwqv~~g~dp~~iR~~Lr~alP~A--------P~kQ~~d~~IlHtTlaRlL~Pp 212 (221)
.+-.=+. .||-+ .+ .......|++++++++... +... .+..=|.||||...+.
T Consensus 76 g~g~F~~~~~p~vl~l--~v-~~~~L~~L~~~l~~~l~~~~g~~~~~~~~~~--~~f~PHiTLar~~~~~ 140 (198)
T 1iuh_A 76 GTGYFPNEGTPRVWFA--KA-EAEGFLRLAEGLRAGVEELLGEEAVRIPGWD--KPFKPHITLARRKAPA 140 (198)
T ss_dssp EEEEESSSSSCSEEEE--EE-ECHHHHHHHHHHHHHHHHHHGGGGGGSTTTT--SCCCCEEEEEEESSCC
T ss_pred ceEECCCCCCCCEEEE--EC-CCHHHHHHHHHHHHHHHHhcCCCcccccCCC--CCCCCcEEeEeccCcc
Confidence 9877665 34422 23 3334677777776665432 1111 3578899999998644
No 6
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=93.28 E-value=0.22 Score=43.58 Aligned_cols=152 Identities=15% Similarity=0.179 Sum_probs=81.5
Q ss_pred cccceeccCCeeeeecccCCCCeEEEEeecCccc--chHHHHHHHHhcCCCCCceeeeeCCCcceEEEeecCCCCC----
Q 027572 50 LSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKY--SVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHIS---- 123 (221)
Q Consensus 50 ~~DlF~~~~g~~~P~l~~~~~pVRa~Vl~l~~~~--a~~i~~av~~~l~p~~d~~iw~q~~~~yH~TvFHaShh~d---- 123 (221)
++..|+- +|...|- |===+|-|++... ...+.++-+++..-.+.+..=+.++++||.|+|----..+
T Consensus 27 ~g~Kf~~-~G~~~pF------pGnTvI~~l~~~s~~~~~l~~iq~~L~~~~~~~~~~~lPpsS~HMTvfdgv~e~~r~~~ 99 (243)
T 2fsq_A 27 LGSRFSA-EGEFLPE------PGNTVVCHLVEGSQTESAIVSTRQRFLDMPEASQLAFTPVSSLHMTVFQGVIESRRALP 99 (243)
T ss_dssp BTTTBCT-TSCBCCC------CEEEEEEEBCTTSHHHHHHHHHHHHHHTSGGGGGEEECCGGGCEEEEEEEEETTCCSTT
T ss_pred cccCCCC-CCCEecC------CCCeEEEecCCCChHHHHHHHHHHHHHhccccCceeeCCchhhhhhhccccccccccCC
Confidence 4666663 7776664 1112345665522 2333332222221112344457799999999997332111
Q ss_pred CCCCC---hHHHHHHHHHHH-HHH--hhcCcceEEEeEEEEcCCcceEEeeeecCCCChHHHHHHHHHhCCCCCccCccC
Q 027572 124 PVPAT---EDEIEAEATAVR-AVA--EDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYD 197 (221)
Q Consensus 124 P~pat---~~e~~~E~~av~-~v~--~~~cPi~~~leRVV~tssGvlL~cwqv~~g~dp~~iR~~Lr~alP~AP~kQ~~d 197 (221)
.=|+. +..+..--+.+. ++. ....|+++.+.-+ .++|+.|.-..-..-.-...+|++|.+++.---+.+ |
T Consensus 100 ~wP~~L~~d~~l~~~~~~~~~~l~~~~~~~p~~~~v~~l--~~~~v~L~Pade~~~~~L~~~R~~l~q~lGi~~p~h--d 175 (243)
T 2fsq_A 100 YWPQTLPLDTPIDAVTDYYRDRLSTFPTLPAFNMRVTGL--RPVGMVMKGATAEDDSIVALWRDTFADFFGYRHPDH--D 175 (243)
T ss_dssp SSCTTSCTTCCHHHHHHHHHHHGGGCCCCCCCCEEEEEE--ETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCCTTG--G
T ss_pred CCCccCcccchHHHHHHHHHHHHhcccCCCCeEEEEecc--ccceEEEecCCHHHHHHHHHHHHHHHHHhCCCCCCC--c
Confidence 12211 122322222222 221 2346888888877 455554433211111234689999999887655555 7
Q ss_pred ceeeeehhhhhcCCC
Q 027572 198 PAILHTSFARLLGHP 212 (221)
Q Consensus 198 ~~IlHtTlaRlL~Pp 212 (221)
..-.|.|||=++.++
T Consensus 176 ~y~fHITLgY~~~~l 190 (243)
T 2fsq_A 176 TYEFHITLSYIVSWF 190 (243)
T ss_dssp GCCEEEECEEESSCB
T ss_pred ceEEEEEEEeccCCC
Confidence 899999999888754
No 7
>1tol_A G3P - TOLA, protein (fusion protein consisting of minor coat protein, glycine rich linker, TOLA,...; bacteriophage M13, phage infection; 1.85A {Enterobacteria phage M13} SCOP: b.37.1.1 d.212.1.1 PDB: 2x9a_B 3qdr_A* 3qdp_A* 1s62_A
Probab=29.29 E-value=30 Score=29.91 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHhhcCcc------eEEEeEEEEcCCcceEEeeeecCCC---ChHHHHHHHHHhCCCCCccCccC
Q 027572 129 EDEIEAEATAVRAVAEDLCPL------KIVLDRVILTSTGVLLGCWQVISGT---DPMTIRAKLRTALPNAPEKQLYD 197 (221)
Q Consensus 129 ~~e~~~E~~av~~v~~~~cPi------~~~leRVV~tssGvlL~cwqv~~g~---dp~~iR~~Lr~alP~AP~kQ~~d 197 (221)
..++..-..+|++...+-=|. ..+.-||.|.++|.|+.. ++.+|. |-+.+|+..|..||..|..++|+
T Consensus 126 ~a~~~~Y~a~Ira~Iqr~~~~pa~~~G~~v~Vrf~L~pdG~Vlsv-~V~SGd~aLD~AAl~AVrrApfP~PP~~~vye 202 (222)
T 1tol_A 126 GADINNYAGQIKSAIESKFYDASSYAGKTCTLRIKLAPDGMLLDI-KPEGGDPALCQAALAAAKLAKIPKPPSQAVYE 202 (222)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTGGGGTTCCEEEEEEECTTSCEEEE-EEEEECHHHHHHHHHHHHHCCCCCCSCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCCchhcCCCEEEEEEEECCCCCEEEE-EecCCCHHHHHHHHHHHHhCCCCcCCchHHHH
Confidence 456666777777766652121 146779999999999998 566554 22445554444577777655554
No 8
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=26.99 E-value=28 Score=26.33 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=31.3
Q ss_pred eeecCCCCC-CCCCchhHHHHHHHHHHHhhhhccccccc
Q 027572 2 TINLGGITS-HSHIPNGERRARLYDKMARDLDDHGAAFL 39 (221)
Q Consensus 2 ~~~l~~~~s-~~~~~~~~~r~~lY~~M~~~l~~~G~~~l 39 (221)
++-+||-.+ +..+....|-..+++++.+-|++.|..+.
T Consensus 20 ~vfvSGq~~~d~~~d~~~Q~~~~l~ni~~~L~~aG~~~~ 58 (122)
T 3k12_A 20 TVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRG 58 (122)
T ss_dssp EEEEEEECCSSTTSCHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred EEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 356788888 66788999999999999999999886543
No 9
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=22.79 E-value=46 Score=25.51 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=30.5
Q ss_pred eeecCCCCC-CCCCchhHHHHHHHHHHHhhhhccccccc
Q 027572 2 TINLGGITS-HSHIPNGERRARLYDKMARDLDDHGAAFL 39 (221)
Q Consensus 2 ~~~l~~~~s-~~~~~~~~~r~~lY~~M~~~l~~~G~~~l 39 (221)
++-+||..+ + .+....|-..+++++.+-|++.|..+.
T Consensus 29 ~lfvSGq~~~d-~~d~~~Q~~~~l~nl~~~L~~aG~~l~ 66 (128)
T 3kjj_A 29 LIFLSGMVPEN-GETAAEQTADVLAQIDRWLAECGSDKA 66 (128)
T ss_dssp EEEECCBCCSS-CSSHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred EEEEeecCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 456889888 5 778899999999999999999886543
No 10
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=21.62 E-value=1.7e+02 Score=21.98 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=29.9
Q ss_pred EEEEcCCcceEEeeeecCCCChHHHHHHHHHhCCCCCcc
Q 027572 155 RVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEK 193 (221)
Q Consensus 155 RVV~tssGvlL~cwqv~~g~dp~~iR~~Lr~alP~AP~k 193 (221)
-+|+.+.|.+..-| .-...++++|++.|+++.-.++-+
T Consensus 130 ~~lID~~G~i~~~~-~g~~~~~~~i~~~l~~~~~~~~~~ 167 (170)
T 3me7_A 130 VVVLSPELQIKDYI-YGVNYNYLEFVNALRLARGEGHHH 167 (170)
T ss_dssp EEEECTTSBEEEEE-ESSSCCHHHHHHHHHHHTTCSCTT
T ss_pred EEEECCCCeEEEEE-eCCCCCHHHHHHHHHHhhcccccc
Confidence 47899999999887 334568999999999997665543
No 11
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=21.30 E-value=39 Score=25.60 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=29.6
Q ss_pred eeecCCCCC-CCCCchhHHHHHHHHHHHhhhhcccccc
Q 027572 2 TINLGGITS-HSHIPNGERRARLYDKMARDLDDHGAAF 38 (221)
Q Consensus 2 ~~~l~~~~s-~~~~~~~~~r~~lY~~M~~~l~~~G~~~ 38 (221)
++-+||..+ + .+....|-..+++++.+-|++.|..+
T Consensus 23 ~lfvSGq~~~d-~~d~~~Q~~~~l~nl~~~L~~aG~~~ 59 (124)
T 3gtz_A 23 TLWYTGVPENL-DADAFEQTANTLAQIDAVLEKQGSSK 59 (124)
T ss_dssp EEEEEECCSCT-TSCHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred EEEEeccCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCH
Confidence 355788888 5 77889999999999999999988654
Done!