Query 027573
Match_columns 221
No_of_seqs 151 out of 1420
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:57:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 3.1E-64 6.8E-69 419.1 21.5 221 1-221 6-227 (321)
2 KOG0819 Annexin [Intracellular 100.0 1.1E-52 2.5E-57 349.9 15.1 210 4-221 81-302 (321)
3 PF00191 Annexin: Annexin; In 99.8 5.7E-19 1.2E-23 117.7 8.0 66 15-80 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.8 2E-18 4.3E-23 115.1 7.3 66 87-152 1-66 (66)
5 smart00335 ANX Annexin repeats 99.6 8.8E-15 1.9E-19 93.2 6.0 53 28-80 1-53 (53)
6 smart00335 ANX Annexin repeats 99.5 3E-14 6.4E-19 90.7 5.5 53 100-152 1-53 (53)
7 PF14003 YlbE: YlbE-like prote 59.6 19 0.0004 23.6 3.7 45 109-153 16-61 (65)
8 KOG0859 Synaptobrevin/VAMP-lik 52.7 37 0.00081 27.4 5.1 67 113-179 75-141 (217)
9 PF13758 Prefoldin_3: Prefoldi 46.1 81 0.0018 22.5 5.5 42 10-51 28-74 (99)
10 COG5118 BDP1 Transcription ini 44.4 41 0.0009 29.8 4.5 40 14-56 370-409 (507)
11 COG5118 BDP1 Transcription ini 43.7 68 0.0015 28.6 5.7 58 86-143 370-427 (507)
12 TIGR03031 cas_csx12 CRISPR-ass 41.8 78 0.0017 30.0 6.0 53 30-82 238-290 (802)
13 PHA02613 48 baseplate subunit; 40.5 13 0.00027 32.0 0.8 100 28-128 115-226 (361)
14 PF13720 Acetyltransf_11: Udp 38.9 44 0.00095 22.8 3.2 20 40-59 27-46 (83)
15 PF14003 YlbE: YlbE-like prote 38.7 38 0.00083 22.1 2.6 35 37-71 16-50 (65)
16 cd00171 Sec7 Sec7 domain; Doma 35.7 1.7E+02 0.0036 23.1 6.6 55 10-68 31-88 (185)
17 PRK13266 Thf1-like protein; Re 34.9 2.6E+02 0.0056 23.1 8.4 75 115-196 36-117 (225)
18 smart00717 SANT SANT SWI3, AD 33.6 93 0.002 17.5 4.5 37 12-49 5-42 (49)
19 PF10788 DUF2603: Protein of u 32.6 1E+02 0.0023 23.3 4.5 37 117-153 64-100 (137)
20 PF00249 Myb_DNA-binding: Myb- 32.4 1.1E+02 0.0024 18.0 5.2 33 16-48 8-42 (48)
21 PF13766 ECH_C: 2-enoyl-CoA Hy 29.8 1.5E+02 0.0032 21.6 5.0 51 32-82 34-92 (118)
22 TIGR02029 AcsF magnesium-proto 28.6 2.3E+02 0.0049 24.7 6.4 90 28-119 19-121 (337)
23 PRK04387 hypothetical protein; 28.3 1.6E+02 0.0036 20.5 4.6 51 171-221 18-76 (90)
24 PF13043 DUF3903: Domain of un 28.0 60 0.0013 18.6 1.9 17 200-216 9-25 (40)
25 PF09888 DUF2115: Uncharacteri 28.0 2.9E+02 0.0063 21.5 9.3 73 109-181 13-92 (163)
26 cd01047 ACSF Aerobic Cyclase S 27.4 2.5E+02 0.0055 24.3 6.4 87 29-117 10-109 (323)
27 KOG1918 3-methyladenine DNA gl 26.6 1E+02 0.0022 25.4 3.8 112 84-212 35-148 (254)
28 COG1753 Predicted antotoxin, c 26.4 1.4E+02 0.003 20.0 3.7 44 170-213 25-68 (74)
29 cd00167 SANT 'SWI3, ADA2, N-Co 26.3 1.2E+02 0.0027 16.6 4.7 33 16-48 6-39 (45)
30 PF15173 FAM180: FAM180 family 26.0 1.6E+02 0.0035 22.2 4.5 48 100-155 59-106 (137)
31 PF10073 DUF2312: Uncharacteri 25.7 2.1E+02 0.0046 19.2 5.0 47 168-214 23-74 (74)
32 PF06757 Ins_allergen_rp: Inse 23.9 3.5E+02 0.0076 21.0 7.1 73 32-108 105-177 (179)
33 PF11264 ThylakoidFormat: Thyl 23.4 4.2E+02 0.009 21.7 8.7 75 115-196 31-112 (216)
34 PF08748 DUF1789: Domain of un 22.9 1.8E+02 0.0039 21.7 4.3 45 168-212 74-121 (128)
35 COG5126 FRQ1 Ca2+-binding prot 21.8 3.9E+02 0.0084 20.8 8.8 87 37-127 10-103 (160)
36 PRK10236 hypothetical protein; 21.8 4.7E+02 0.01 21.7 9.0 39 118-157 63-101 (237)
37 CHL00185 ycf59 magnesium-proto 21.1 3.4E+02 0.0074 23.8 6.1 91 28-119 25-127 (351)
38 COG1043 LpxA Acyl-[acyl carrie 21.1 1.1E+02 0.0024 25.6 3.1 26 41-66 205-232 (260)
39 PF13921 Myb_DNA-bind_6: Myb-l 20.7 1.7E+02 0.0037 17.9 3.4 37 16-55 5-41 (60)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-64 Score=419.10 Aligned_cols=221 Identities=46% Similarity=0.656 Sum_probs=218.0
Q ss_pred CccccCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHhcCCCHHHHHHHHHHhHHhhcccHHHhhhhhcchhHHHHHHHH
Q 027573 1 MATLKVPTQTPSAAEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLW 80 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~da~~L~~A~~g~gtde~~l~~il~~rs~~q~~~i~~~Y~~~yg~~L~~~i~~~~sg~~~~~l~~l 80 (221)
|++.++|.+.|+|..||+.|++||+|+||||.+||+||++||+.||+.|+.+|+.+||++|.++|++++||+|++++++|
T Consensus 6 ~~~t~~~~~~f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al 85 (321)
T KOG0819|consen 6 MAGTVVPAPVFDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVAL 85 (321)
T ss_pred CCcccCCCCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHhhccCCCchHHHHHHHhcCCHHHHHHHHHHHhHhhHhhHHHHHhhcccCcHHHHHHHHhcccccCC
Q 027573 81 TLTPAERDAYLANEATKRFTLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPLVSTFRYDG 160 (221)
Q Consensus 81 ~~~~~~~da~~L~~A~~g~gtde~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg~~~~~ll~ll~~~r~~~ 160 (221)
+.+|+++||..|++||||.|||+.+||+|+|||||.|+++|+++|+..|+++|+++|.++|||+|+++|+.|+++.|+++
T Consensus 86 ~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~ 165 (321)
T KOG0819|consen 86 MKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEG 165 (321)
T ss_pred cCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccCHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcHHhhcC
Q 027573 161 GDVNMMLARTEAKILRDKISD-KDYAHEELIRILTTRSKAQINATLNHYNDTFGNAINKVLT 221 (221)
Q Consensus 161 ~~vd~~~~~~da~~L~~a~~~-~~~d~~~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~ik 221 (221)
..||+.+|.+||+.|++|+++ +|+|+..|++||++||..||+.++.+|++.+|++|+++|+
T Consensus 166 ~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~ 227 (321)
T KOG0819|consen 166 DRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIK 227 (321)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence 899999999999999999999 8999999999999999999999999999999999999985
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-52 Score=349.89 Aligned_cols=210 Identities=27% Similarity=0.401 Sum_probs=201.3
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhCCCCCHHHHHHHhcCCCHHHHHHHHHHhHHhhcccHHHhhhhhcchhHHHHHHHHhCC
Q 027573 4 LKVPTQTPSAAEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTLT 83 (221)
Q Consensus 4 ~~~~~~~~~~~~da~~L~~A~~g~gtde~~l~~il~~rs~~q~~~i~~~Y~~~yg~~L~~~i~~~~sg~~~~~l~~l~~~ 83 (221)
.++.+..+|++.||+.|++||+|+||||.++|||+|+|||.|+++|+++|+..|+++|++||.+++||+|+++|+.++.+
T Consensus 81 ~i~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~ 160 (321)
T KOG0819|consen 81 AIVALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQG 160 (321)
T ss_pred HHHHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhc
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred -----------CcHHHHHHHHHhhc-cCCCchHHHHHHHhcCCHHHHHHHHHHHhHhhHhhHHHHHhhcccCcHHHHHHH
Q 027573 84 -----------PAERDAYLANEATK-RFTLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVP 151 (221)
Q Consensus 84 -----------~~~~da~~L~~A~~-g~gtde~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg~~~~~ll~ 151 (221)
.+..||..|++|.. .+|||+..++.||++||..|++.+++.|+..+|+++++.|+.+++|+|+.+|++
T Consensus 161 ~R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~lla 240 (321)
T KOG0819|consen 161 NRDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLA 240 (321)
T ss_pred CCccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHH
Confidence 27899999999996 568999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccCCCccCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcHHhhcC
Q 027573 152 LVSTFRYDGGDVNMMLARTEAKILRDKISDKDYAHEELIRILTTRSKAQINATLNHYNDTFGNAINKVLT 221 (221)
Q Consensus 152 ll~~~r~~~~~vd~~~~~~da~~L~~a~~~~~~d~~~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~ik 221 (221)
+++|.+++ +.+||+.||.||+|.|||+.+||||+++||+.||..|+.+|+++||+||.++|+
T Consensus 241 iv~c~~n~--------~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~ 302 (321)
T KOG0819|consen 241 IVKCIRNP--------PAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIK 302 (321)
T ss_pred HHHHHcCH--------HHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHh
Confidence 99999988 489999999999999999999999999999999999999999999999999985
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.78 E-value=5.7e-19 Score=117.75 Aligned_cols=66 Identities=44% Similarity=0.782 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHhcCCCHHHHHHHHHHhHHhhcccHHHhhhhhcchhHHHHHHHH
Q 027573 15 EDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLW 80 (221)
Q Consensus 15 ~da~~L~~A~~g~gtde~~l~~il~~rs~~q~~~i~~~Y~~~yg~~L~~~i~~~~sg~~~~~l~~l 80 (221)
.||+.|++|++|+|+|+..+++||++||+.|+++|.++|++.||++|.++|++++||+|++++++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999875
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.76 E-value=2e-18 Score=115.12 Aligned_cols=66 Identities=52% Similarity=0.680 Sum_probs=63.3
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHhcCCHHHHHHHHHHHhHhhHhhHHHHHhhcccCcHHHHHHHH
Q 027573 87 RDAYLANEATKRFTLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPL 152 (221)
Q Consensus 87 ~da~~L~~A~~g~gtde~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg~~~~~ll~l 152 (221)
+||+.|++|++|.|+|+..+++|+++||+.|++.|+++|+..||++|+++|+++++|+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999875
No 5
>smart00335 ANX Annexin repeats.
Probab=99.56 E-value=8.8e-15 Score=93.19 Aligned_cols=53 Identities=40% Similarity=0.661 Sum_probs=51.2
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHhHHhhcccHHHhhhhhcchhHHHHHHHH
Q 027573 28 GTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLW 80 (221)
Q Consensus 28 gtde~~l~~il~~rs~~q~~~i~~~Y~~~yg~~L~~~i~~~~sg~~~~~l~~l 80 (221)
||||..|++|+++||+.|+++|+.+|++.||++|.++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999998865
No 6
>smart00335 ANX Annexin repeats.
Probab=99.51 E-value=3e-14 Score=90.73 Aligned_cols=53 Identities=49% Similarity=0.691 Sum_probs=51.2
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHhHhhHhhHHHHHhhcccCcHHHHHHHH
Q 027573 100 TLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPL 152 (221)
Q Consensus 100 gtde~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg~~~~~ll~l 152 (221)
|||+..|++|+++|++.|+..|+++|++.||++|+++|+++++|+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999999864
No 7
>PF14003 YlbE: YlbE-like protein
Probab=59.57 E-value=19 Score=23.60 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=33.8
Q ss_pred HHhcCCHHHHHHHHHHHhHhhHhhHHHHHhhcccC-cHHHHHHHHh
Q 027573 109 IACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSG-DFRKLLVPLV 153 (221)
Q Consensus 109 il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg-~~~~~ll~ll 153 (221)
..++|.|.++...-.++..-|++++-+.|..-..+ ..-.+++.+.
T Consensus 16 R~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M~ 61 (65)
T PF14003_consen 16 RILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEMF 61 (65)
T ss_pred HHHccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHHH
Confidence 45689999999999999999999999999864433 1334444443
No 8
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.70 E-value=37 Score=27.37 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHhHhhHhhHHHHHhhcccCcHHHHHHHHhcccccCCCccCHHHHHHHHHHHHhhc
Q 027573 113 RSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPLVSTFRYDGGDVNMMLARTEAKILRDKI 179 (221)
Q Consensus 113 rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg~~~~~ll~ll~~~r~~~~~vd~~~~~~da~~L~~a~ 179 (221)
++-.-|++|++.|.+.||.....++.......|.+.|..-+...-+.+..-....+...+..++.-|
T Consensus 75 ipfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~evk~vM 141 (217)
T KOG0859|consen 75 IPFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTEVKGVM 141 (217)
T ss_pred ccHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHH
Confidence 3557899999999999999999988887777788877766655544433212233444444444444
No 9
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=46.10 E-value=81 Score=22.46 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHhcC-----CCHHHHHHHHH
Q 027573 10 TPSAAEDAEQLHKAFQGWGTNEALIISVLAH-----RNAAQRKLIRE 51 (221)
Q Consensus 10 ~~~~~~da~~L~~A~~g~gtde~~l~~il~~-----rs~~q~~~i~~ 51 (221)
+.++..+-..++.-+.|...++..|-+||.. ||+.|+..+..
T Consensus 28 ~~~~~e~l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~ 74 (99)
T PF13758_consen 28 DDATREDLLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDVLS 74 (99)
T ss_pred CCCCHHHHHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 3566777788888899988899999999987 88888776643
No 10
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=44.36 E-value=41 Score=29.85 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHhcCCCHHHHHHHHHHhHHh
Q 027573 14 AEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNET 56 (221)
Q Consensus 14 ~~da~~L~~A~~g~gtde~~l~~il~~rs~~q~~~i~~~Y~~~ 56 (221)
..+.+..|+|+.-||||-..|-.++.+|+..|+ ..-|.+-
T Consensus 370 ~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqI---KaKfi~E 409 (507)
T COG5118 370 KKEIEKFYKALSIWGTDFSLISSLFPNRERKQI---KAKFIKE 409 (507)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHhcCchhHHHH---HHHHHHH
Confidence 367889999999999999999999999986664 4444443
No 11
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=43.73 E-value=68 Score=28.55 Aligned_cols=58 Identities=7% Similarity=-0.031 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHhcCCHHHHHHHHHHHhHhhHhhHHHHHhhcccC
Q 027573 86 ERDAYLANEATKRFTLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSG 143 (221)
Q Consensus 86 ~~da~~L~~A~~g~gtde~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg 143 (221)
.-+....|+|+.-+|||..++..++-.|+..|+.+=+..=.+....-+.++++....-
T Consensus 370 ~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~ 427 (507)
T COG5118 370 KKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKKPF 427 (507)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCC
Confidence 4567888999999999999988888888877665544333345555666666665443
No 12
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.
Probab=41.78 E-value=78 Score=30.02 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=40.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHhHHhhcccHHHhhhhhcchhHHHHHHHHhC
Q 027573 30 NEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTL 82 (221)
Q Consensus 30 de~~l~~il~~rs~~q~~~i~~~Y~~~yg~~L~~~i~~~~sg~~~~~l~~l~~ 82 (221)
.-..+..++++.|+-|+..++..|...-......-....+..-|.+.+..|-.
T Consensus 238 ~~~~l~nLvGnlSN~qlk~LrrYfnDk~~~k~d~wdeqkf~~~~~r~v~~wrh 290 (802)
T TIGR03031 238 PSVCLSNLLGNLSNLQLKNLRRYFNDKIHKKPDQWDEQKFGNEFLRMLKNWRH 290 (802)
T ss_pred chhhHHHHhhhhhhhhHHHHHHHhccccccccccccHhHHHHHHHHHHHhccC
Confidence 44678899999999999999999987665555555666666667777777643
No 13
>PHA02613 48 baseplate subunit; Provisional
Probab=40.53 E-value=13 Score=32.03 Aligned_cols=100 Identities=16% Similarity=0.073 Sum_probs=59.1
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHhHHhhcccHHHh--------hhh----hcchhHHHHHHHHhCCCcHHHHHHHHHh
Q 027573 28 GTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKA--------LDK----ELSSDFERSVLLWTLTPAERDAYLANEA 95 (221)
Q Consensus 28 gtde~~l~~il~~rs~~q~~~i~~~Y~~~yg~~L~~~--------i~~----~~sg~~~~~l~~l~~~~~~~da~~L~~A 95 (221)
+.+...|..||..||..+.......|+..- .+|... +.. .+-|-.+.+--..+-|.-++-=..-+.+
T Consensus 115 ~~~~~pianILlPRs~sDvd~~sHrfnDv~-dSlitkGggt~tg~LS~~aS~av~GalESit~GimAD~~Eqiy~~~rsm 193 (361)
T PHA02613 115 TFDKEPIANILLPRSKSDVDTNSHRFNDVG-ESLITKGGGTATGALSNMASTAVFGALESITGGIMADRGEQIYTTARSM 193 (361)
T ss_pred ccchhhhhhhhccCccccccccccccccch-hhHhhcCCCccchhHHHHHHHHHHHhhhhhcccccccccchhhHhhHHH
Confidence 346788999999999999888888887653 233221 111 1112222222223333333222222333
Q ss_pred hccCCCchHHHHHHHhcCCHHHHHHHHHHHhHh
Q 027573 96 TKRFTLSNWVLMEIACTRSSRDLFAAKQAYHAR 128 (221)
Q Consensus 96 ~~g~gtde~~li~il~~rs~~~l~~i~~~Y~~~ 128 (221)
..|....-.....-|.-|+..+|.+|-+.|+-.
T Consensus 194 y~GadnRTK~y~w~ltprs~~DL~eiikIY~~F 226 (361)
T PHA02613 194 YAGADNRTKVYTWTLTPRSREDLMEIIKIYELF 226 (361)
T ss_pred hcCccccceeEEEecccccHHHHHHHHHHHHHH
Confidence 445444445566778889999999999999863
No 14
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=38.89 E-value=44 Score=22.81 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhHHhhcc
Q 027573 40 HRNAAQRKLIREIYNETYGE 59 (221)
Q Consensus 40 ~rs~~q~~~i~~~Y~~~yg~ 59 (221)
+-|++++..|+.+|+..|..
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~ 46 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRS 46 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 45789999999999999964
No 15
>PF14003 YlbE: YlbE-like protein
Probab=38.70 E-value=38 Score=22.15 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=29.8
Q ss_pred HhcCCCHHHHHHHHHHhHHhhcccHHHhhhhhcch
Q 027573 37 VLAHRNAAQRKLIREIYNETYGEDLLKALDKELSS 71 (221)
Q Consensus 37 il~~rs~~q~~~i~~~Y~~~yg~~L~~~i~~~~sg 71 (221)
-..+|.|.++...-.++..-||+.+-..|.+-..|
T Consensus 16 R~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~ 50 (65)
T PF14003_consen 16 RILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQ 50 (65)
T ss_pred HHHccCHHHHHHHHHHHHHHHhccccHHHHHHHhH
Confidence 35689999999999999999999999998765443
No 16
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=35.75 E-value=1.7e+02 Score=23.10 Aligned_cols=55 Identities=27% Similarity=0.230 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHhcCCCHHHHHHHHHHhHHhh---cccHHHhhhhh
Q 027573 10 TPSAAEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETY---GEDLLKALDKE 68 (221)
Q Consensus 10 ~~~~~~da~~L~~A~~g~gtde~~l~~il~~rs~~q~~~i~~~Y~~~y---g~~L~~~i~~~ 68 (221)
..++..-|+-|+.. .|.|...+-++|+...+ --..+..+|-..+ |.++.+.++.-
T Consensus 31 ~~~~~~iA~fl~~~---~~l~k~~ig~~L~~~~~-~~~~vL~~y~~~f~f~~~~i~~ALR~~ 88 (185)
T cd00171 31 DDSPKEIAKFLYET---EGLNKKAIGEYLGENNE-FNSLVLHEFVDLFDFSGLRLDEALRKF 88 (185)
T ss_pred CCCHHHHHHHHHhC---CCCCHHHHHHHHcCCch-HHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 34677778888776 46799999999999874 4488888899886 67888888753
No 17
>PRK13266 Thf1-like protein; Reviewed
Probab=34.86 E-value=2.6e+02 Score=23.05 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhH--hhHhhHHHHHhhcccC-----cHHHHHHHHhcccccCCCccCHHHHHHHHHHHHhhcCCCCCCHH
Q 027573 115 SRDLFAAKQAYHA--RYKKSLEEDVAYHTSG-----DFRKLLVPLVSTFRYDGGDVNMMLARTEAKILRDKISDKDYAHE 187 (221)
Q Consensus 115 ~~~l~~i~~~Y~~--~yg~~L~~~I~~~~sg-----~~~~~ll~ll~~~r~~~~~vd~~~~~~da~~L~~a~~~~~~d~~ 187 (221)
+-||-.....|+. .|-.-|......-+.| +-..++-++|++.. .||...+.||+.|.+...+ .+..
T Consensus 36 ElHLl~~n~~F~yDplfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a~~-----~dp~~~r~dA~~l~~~a~~--~s~~ 108 (225)
T PRK13266 36 ELHLLSVNSDFKYDPLFALGLVTVFDRFMQGYRPEEHKDSIFNALCQAVG-----FDPEQLRQDAERLLELAKG--KSLK 108 (225)
T ss_pred HHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhc--CCHH
Confidence 5666666665554 4555555555544443 23445666666532 4778888899888887776 5555
Q ss_pred HHHHHHhcC
Q 027573 188 ELIRILTTR 196 (221)
Q Consensus 188 ~li~il~~r 196 (221)
.+...+...
T Consensus 109 ~i~~~l~~~ 117 (225)
T PRK13266 109 EILSWLTQK 117 (225)
T ss_pred HHHHHHhcc
Confidence 666666643
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=33.65 E-value=93 Score=17.51 Aligned_cols=37 Identities=30% Similarity=0.295 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHhhhCCC-CCHHHHHHHhcCCCHHHHHHH
Q 027573 12 SAAEDAEQLHKAFQGWG-TNEALIISVLAHRNAAQRKLI 49 (221)
Q Consensus 12 ~~~~da~~L~~A~~g~g-tde~~l~~il~~rs~~q~~~i 49 (221)
.++.| ..|.+++...| .+=..|...+.+||+.++..-
T Consensus 5 t~~E~-~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~ 42 (49)
T smart00717 5 TEEED-ELLIELVKKYGKNNWEKIAKELPGRTAEQCRER 42 (49)
T ss_pred CHHHH-HHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHH
Confidence 34444 45777777777 677888888999999886543
No 19
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=32.63 E-value=1e+02 Score=23.29 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=31.2
Q ss_pred HHHHHHHHHhHhhHhhHHHHHhhcccCcHHHHHHHHh
Q 027573 117 DLFAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPLV 153 (221)
Q Consensus 117 ~l~~i~~~Y~~~yg~~L~~~I~~~~sg~~~~~ll~ll 153 (221)
=+..++++++..|.--|+.+|-+.+.=||.++..-.+
T Consensus 64 Li~~~k~~~~E~f~lkLEk~I~q~~PIDF~Dvw~VAm 100 (137)
T PF10788_consen 64 LIESLKNAQKENFELKLEKDILQQMPIDFEDVWAVAM 100 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3567899999999999999999999999988764433
No 20
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=32.38 E-value=1.1e+02 Score=18.01 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=26.2
Q ss_pred HHHHHHHhhhCCCCC-HHHHHHHhc-CCCHHHHHH
Q 027573 16 DAEQLHKAFQGWGTN-EALIISVLA-HRNAAQRKL 48 (221)
Q Consensus 16 da~~L~~A~~g~gtd-e~~l~~il~-~rs~~q~~~ 48 (221)
+-+.|.++++..|.+ =..|.+-+. +||+.|...
T Consensus 8 E~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 8 EDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp HHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 445688888888888 688888888 999988654
No 21
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=29.75 E-value=1.5e+02 Score=21.56 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=38.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhHHhhcccHHHhhhhhcc--------hhHHHHHHHHhC
Q 027573 32 ALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELS--------SDFERSVLLWTL 82 (221)
Q Consensus 32 ~~l~~il~~rs~~q~~~i~~~Y~~~yg~~L~~~i~~~~s--------g~~~~~l~~l~~ 82 (221)
....+.|.++||--+.-..+.+++-.+.+|.+.+.-|+. |+|..-+-+++.
T Consensus 34 ~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LI 92 (118)
T PF13766_consen 34 QKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLI 92 (118)
T ss_dssp HHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 456688999999999999999999888999998887653 566666665553
No 22
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=28.61 E-value=2.3e+02 Score=24.70 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=51.1
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHhHHhhcc-------cHHH---hhhhhcchhHHHHHHHHhCCCcHHHHHHHHHhhc
Q 027573 28 GTNEALIISVLAHRNAAQRKLIREIYNETYGE-------DLLK---ALDKELSSDFERSVLLWTLTPAERDAYLANEATK 97 (221)
Q Consensus 28 gtde~~l~~il~~rs~~q~~~i~~~Y~~~yg~-------~L~~---~i~~~~sg~~~~~l~~l~~~~~~~da~~L~~A~~ 97 (221)
-||-+.+-.+=.+...++++++.+.++..|++ +..+ +|.-++...|-+.|+..+ .+++-.-.|++-++
T Consensus 19 TTDF~~m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerSc--TaEFSGflLYKEl~ 96 (337)
T TIGR02029 19 TTDFEEMANLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSC--TSEFSGFLLYKELS 96 (337)
T ss_pred cccHHHHHhcCCchhHHHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHHHHHHHHh--hhhhhhhHHHHHHH
Confidence 36777777777777888999999999988864 2222 122222222334333322 34666667777776
Q ss_pred cCCCchH-HHHH--HHhcCCHHHHH
Q 027573 98 RFTLSNW-VLME--IACTRSSRDLF 119 (221)
Q Consensus 98 g~gtde~-~li~--il~~rs~~~l~ 119 (221)
....+.+ .|-+ -+++|.+..-.
T Consensus 97 rrlk~~~P~lae~F~~MaRDEARHA 121 (337)
T TIGR02029 97 RRLKNRDPVVAELFQLMARDEARHA 121 (337)
T ss_pred HhcCCCChHHHHHHHHHhhhhHHHh
Confidence 5444443 3333 34456654433
No 23
>PRK04387 hypothetical protein; Provisional
Probab=28.29 E-value=1.6e+02 Score=20.54 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=34.0
Q ss_pred HHHHHHhhcCC---CCCCHHHHHHHH-----hcCCHHHHHHHHHHHHHHhCCcHHhhcC
Q 027573 171 EAKILRDKISD---KDYAHEELIRIL-----TTRSKAQINATLNHYNDTFGNAINKVLT 221 (221)
Q Consensus 171 da~~L~~a~~~---~~~d~~~li~il-----~~rs~~~l~~I~~~Y~~~yg~~L~~~ik 221 (221)
++-.++++++. .|.+-..|+..- +-.|..+=+.|..+|++..|-|+.++||
T Consensus 18 ~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEKql~reFe~~SGYS~Y~~Vk 76 (90)
T PRK04387 18 SVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFEKVSGYSIYRAVQ 76 (90)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCcHHHHHH
Confidence 34445555554 366554444221 1257888899999999999999998874
No 24
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=27.97 E-value=60 Score=18.61 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhCCcH
Q 027573 200 QINATLNHYNDTFGNAI 216 (221)
Q Consensus 200 ~l~~I~~~Y~~~yg~~L 216 (221)
-++.+..+-++.||++|
T Consensus 9 ai~kvr~eckrrfgktl 25 (40)
T PF13043_consen 9 AIQKVRAECKRRFGKTL 25 (40)
T ss_pred HHHHHHHHHHHHhchhh
Confidence 35678899999999986
No 25
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=27.95 E-value=2.9e+02 Score=21.46 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=42.3
Q ss_pred HHhcCCHHHHHHHHHHHhH-------hhHhhHHHHHhhcccCcHHHHHHHHhcccccCCCccCHHHHHHHHHHHHhhcCC
Q 027573 109 IACTRSSRDLFAAKQAYHA-------RYKKSLEEDVAYHTSGDFRKLLVPLVSTFRYDGGDVNMMLARTEAKILRDKISD 181 (221)
Q Consensus 109 il~~rs~~~l~~i~~~Y~~-------~yg~~L~~~I~~~~sg~~~~~ll~ll~~~r~~~~~vd~~~~~~da~~L~~a~~~ 181 (221)
.+..-|..||+.++..+.+ .|...+...+.....|.|.++...--++.-.+...+|.......-..+.+....
T Consensus 13 ~~~~~si~DL~~i~~~l~~~~~~lp~~Yr~~~~~~~~~~~~~~~~eIk~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~ 92 (163)
T PF09888_consen 13 EASNYSIYDLMKIRGFLEKDIKYLPPEYREKYIESFFEYFFGTYHEIKNMYRSGSFIEDFEIDEEEFKEFLNMIEDGCSY 92 (163)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCHHHHHHHHHHHHHhhcc
Confidence 4444566777777666665 566666666665555666665432222333333457777777777777655443
No 26
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=27.37 E-value=2.5e+02 Score=24.28 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=46.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHhHHhhcc-------cHHH---hhhhhcchhHHHHHHHHhCCCcHHHHHHHHHhhcc
Q 027573 29 TNEALIISVLAHRNAAQRKLIREIYNETYGE-------DLLK---ALDKELSSDFERSVLLWTLTPAERDAYLANEATKR 98 (221)
Q Consensus 29 tde~~l~~il~~rs~~q~~~i~~~Y~~~yg~-------~L~~---~i~~~~sg~~~~~l~~l~~~~~~~da~~L~~A~~g 98 (221)
||-+.+-.+=.+...+++.++.+.++..|++ +... ++..++...|-+.|+..+ .+++-.-.|++-++.
T Consensus 10 TDF~~m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSc--taEFSGflLYKEl~r 87 (323)
T cd01047 10 TDFDEMAALDISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSC--TSEFSGFLLYKELGR 87 (323)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHH
Confidence 5556666666666778999999999988764 2222 122222333333333322 245556667776664
Q ss_pred CCCch-HHHHH--HHhcCCHHH
Q 027573 99 FTLSN-WVLME--IACTRSSRD 117 (221)
Q Consensus 99 ~gtde-~~li~--il~~rs~~~ 117 (221)
...+. ..|-+ -+++|.+..
T Consensus 88 rlk~~nP~lae~F~lMaRDEAR 109 (323)
T cd01047 88 RLKNTNPVVAELFRLMARDEAR 109 (323)
T ss_pred HcccCCcHHHHHHHHHhhhHHH
Confidence 43332 22233 334555543
No 27
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair]
Probab=26.56 E-value=1e+02 Score=25.44 Aligned_cols=112 Identities=9% Similarity=0.067 Sum_probs=51.6
Q ss_pred CcHHHHHHHHHhhccCCCchHHHHHHHhcCCHHHHHHHHHHHhHhhHhhHHHHHhhcccCcHHHHHHHHhcccccC--CC
Q 027573 84 PAERDAYLANEATKRFTLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPLVSTFRYD--GG 161 (221)
Q Consensus 84 ~~~~da~~L~~A~~g~gtde~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg~~~~~ll~ll~~~r~~--~~ 161 (221)
+...+-..+..|+.+....+..|..++-...|.-...-..=|...-..=|.+.+.+.-.....+=+++++++.-.- +.
T Consensus 35 ~~~s~~~k~e~al~hl~~kd~~L~~lv~~~~p~~~~~~q~Pf~~LiraIlsQQLs~kAansI~~Rfvsl~~g~~~~~~pe 114 (254)
T KOG1918|consen 35 YILSHEEKAEIALSHLDEKDPSLVKLVGNHEPLTFKETQTPFERLIRAILSQQLSGKAANSIYNRFVSLCGGAEKFPTPE 114 (254)
T ss_pred cccccHHHHHHHHHhhhhcchHHHHHhcCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCch
Confidence 3444455566677665555566666666554333332222233332223333333322222334455666663211 11
Q ss_pred ccCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 027573 162 DVNMMLARTEAKILRDKISDKDYAHEELIRILTTRSKAQINATLNHYNDTF 212 (221)
Q Consensus 162 ~vd~~~~~~da~~L~~a~~~~~~d~~~li~il~~rs~~~l~~I~~~Y~~~y 212 (221)
.+++ .|++.|++.+-. .|--..|..+..+|...|
T Consensus 115 ~i~~----~~~~~lrkcG~S-------------~rK~~yLh~lA~~~~ng~ 148 (254)
T KOG1918|consen 115 FIDP----LDCEELRKCGFS-------------KRKASYLHSLAEAYTNGY 148 (254)
T ss_pred hcCc----CCHHHHHHhCcc-------------hhhHHHHHHHHHHHhcCC
Confidence 2332 356667766533 233445555555555443
No 28
>COG1753 Predicted antotoxin, copG family [Signal transduction mechanisms]
Probab=26.38 E-value=1.4e+02 Score=19.97 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 027573 170 TEAKILRDKISDKDYAHEELIRILTTRSKAQINATLNHYNDTFG 213 (221)
Q Consensus 170 ~da~~L~~a~~~~~~d~~~li~il~~rs~~~l~~I~~~Y~~~yg 213 (221)
.|...|.+-.+....+-+.+.+.+.++|+++...+..+=++...
T Consensus 25 SFSdvI~~l~~kKr~~levl~~~~g~~s~eEvek~~~e~~~aek 68 (74)
T COG1753 25 SFSDVIRELIEKKRGNLEVLMRAFGTLSEEEVEKIKKEEKEAEK 68 (74)
T ss_pred cHHHHHHHHHHHhhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 45566666666666788899999999999999998877665543
No 29
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=26.27 E-value=1.2e+02 Score=16.63 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=24.2
Q ss_pred HHHHHHHhhhCCC-CCHHHHHHHhcCCCHHHHHH
Q 027573 16 DAEQLHKAFQGWG-TNEALIISVLAHRNAAQRKL 48 (221)
Q Consensus 16 da~~L~~A~~g~g-tde~~l~~il~~rs~~q~~~ 48 (221)
+-..|.+++...| .+=..|.+.+.+||..|+..
T Consensus 6 E~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~ 39 (45)
T cd00167 6 EDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRE 39 (45)
T ss_pred HHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHH
Confidence 3445677777667 67788888888899887654
No 30
>PF15173 FAM180: FAM180 family
Probab=25.99 E-value=1.6e+02 Score=22.18 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=34.4
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHhHhhHhhHHHHHhhcccCcHHHHHHHHhcc
Q 027573 100 TLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPLVST 155 (221)
Q Consensus 100 gtde~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg~~~~~ll~ll~~ 155 (221)
|.+-.++.+=++-++.+++++..+.+...-| .|.. -||++.+++++-+
T Consensus 59 ~~~l~~ic~~viPk~l~di~rl~~~ls~~~g-~L~~-------~DFErtlLTlvy~ 106 (137)
T PF15173_consen 59 ARRLEVICQDVIPKSLPDIRRLSAQLSQHRG-PLSP-------EDFERTLLTLVYT 106 (137)
T ss_pred hhHHHHHHHHHCCCcHHHHHHHHHHHHhCCC-CCCH-------HHHHHHHHHHHHH
Confidence 3566667777777888888888888766655 3322 4799999888765
No 31
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.73 E-value=2.1e+02 Score=19.19 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHhCC
Q 027573 168 ARTEAKILRDKISDKDYAHEELIRILTTR-----SKAQINATLNHYNDTFGN 214 (221)
Q Consensus 168 ~~~da~~L~~a~~~~~~d~~~li~il~~r-----s~~~l~~I~~~Y~~~yg~ 214 (221)
...|.+.+|.-.++.|-|...+-.|+..| ...+-..|.+.|.+..|+
T Consensus 23 i~~dikdVyaEAK~~GfD~K~lr~ii~lRk~d~~~r~E~eail~~Y~~ALGm 74 (74)
T PF10073_consen 23 ISDDIKDVYAEAKGNGFDTKALRQIIRLRKKDPDEREEEEAILDLYMSALGM 74 (74)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhCc
Confidence 34566777777777888888887777754 335567788999888774
No 32
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=23.94 E-value=3.5e+02 Score=21.03 Aligned_cols=73 Identities=11% Similarity=0.047 Sum_probs=47.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhHHhhcccHHHhhhhhcchhHHHHHHHHhCCCcHHHHHHHHHhhccCCCchHHHHH
Q 027573 32 ALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTLTPAERDAYLANEATKRFTLSNWVLME 108 (221)
Q Consensus 32 ~~l~~il~~rs~~q~~~i~~~Y~~~yg~~L~~~i~~~~sg~~~~~l~~l~~~~~~~da~~L~~A~~g~gtde~~li~ 108 (221)
.-+-+++.--+-.++.++...=.+ .+....+.+++-.|..|+.++-.++.+| ....+...++..|.|-..+++
T Consensus 105 g~~~di~~~lP~~~l~aL~~~K~~-~s~~F~~f~~~l~S~ef~~~~~~~~~~~---~~~~~~~~L~~~Gvdv~~l~~ 177 (179)
T PF06757_consen 105 GFVDDILALLPRDKLRALYEEKLA-TSPEFAEFVEALRSPEFQQLYNALWASP---EFQRLLNELRENGVDVDYLLE 177 (179)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHH-CCHHHHHHHHHHcCHHHHHHHHHHHcCH---HHHHHHHHHHHcCCCHHHHHH
Confidence 345577777777776666433222 2567777777777888888888877654 445555566666777766665
No 33
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=23.44 E-value=4.2e+02 Score=21.71 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhH--hhHhhHHHHHhhcccC-----cHHHHHHHHhcccccCCCccCHHHHHHHHHHHHhhcCCCCCCHH
Q 027573 115 SRDLFAAKQAYHA--RYKKSLEEDVAYHTSG-----DFRKLLVPLVSTFRYDGGDVNMMLARTEAKILRDKISDKDYAHE 187 (221)
Q Consensus 115 ~~~l~~i~~~Y~~--~yg~~L~~~I~~~~sg-----~~~~~ll~ll~~~r~~~~~vd~~~~~~da~~L~~a~~~~~~d~~ 187 (221)
+.||-.+...|+. .|.--+......-+.| +-..++-++|++. ..||...+.||+.|.+...+ ....
T Consensus 31 e~HLl~~n~~F~yD~lfalG~vt~fd~fm~GY~p~~~~~~If~Alc~a~-----~~dp~~~r~dA~~l~~~a~~--~s~~ 103 (216)
T PF11264_consen 31 ELHLLSVNKDFQYDPLFALGLVTVFDRFMQGYPPEEDKDSIFNALCQAL-----GFDPEQYRQDAEKLEEWAKG--KSIE 103 (216)
T ss_pred HHHHHHhccCceeCchHHhhHHHHHHHHhcCCCChhHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHc--CCHH
Confidence 5666666666654 5665555555544433 3445566666663 24788889999998888877 4555
Q ss_pred HHHHHHhcC
Q 027573 188 ELIRILTTR 196 (221)
Q Consensus 188 ~li~il~~r 196 (221)
.+...+...
T Consensus 104 ~l~~~l~~~ 112 (216)
T PF11264_consen 104 DLLSWLSQK 112 (216)
T ss_pred HHHHHHhcc
Confidence 666666543
No 34
>PF08748 DUF1789: Domain of unknown function (DUF1789); InterPro: IPR014859 This entry represents a putative uncharacterised protein found in phage-related conserved hypothetical protein from Bordetella.
Probab=22.89 E-value=1.8e+02 Score=21.72 Aligned_cols=45 Identities=13% Similarity=0.272 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCCCCCCH---HHHHHHHhcCCHHHHHHHHHHHHHHh
Q 027573 168 ARTEAKILRDKISDKDYAH---EELIRILTTRSKAQINATLNHYNDTF 212 (221)
Q Consensus 168 ~~~da~~L~~a~~~~~~d~---~~li~il~~rs~~~l~~I~~~Y~~~y 212 (221)
+..+++.+.+...||+-|+ .-=+..|+...+.=-.+|..+|.+.+
T Consensus 74 ~~~~ad~i~~iv~gW~ld~~fn~Enl~~L~~~yp~a~~AI~~aY~~~l 121 (128)
T PF08748_consen 74 VDLNADFILEIVAGWDLDEEFNDENLELLVDNYPGAAEAIVDAYYQAL 121 (128)
T ss_pred hhhhHHHHHHHHhccCCCCccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5668889999999998764 34445666667888888999998764
No 35
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=21.81 E-value=3.9e+02 Score=20.76 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=57.9
Q ss_pred HhcCCCHHHHHHHHHHhHHhhcccHHHhhhhhcchhHHHHHHHHhCCCcHHHHHHHHHhhcc--CCCchHHHHHHHhc--
Q 027573 37 VLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTLTPAERDAYLANEATKR--FTLSNWVLMEIACT-- 112 (221)
Q Consensus 37 il~~rs~~q~~~i~~~Y~~~yg~~L~~~i~~~~sg~~~~~l~~l~~~~~~~da~~L~~A~~g--~gtde~~li~il~~-- 112 (221)
....-+..|+++++++|+...... .- .-..+++.+++-.+=.+|....+..|-+.+.. ...+...++.++..
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~-~G---~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDS-DG---LIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKL 85 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCC-CC---CCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHh
Confidence 456678999999999999765311 00 12245677777767789999999999988875 23455555544432
Q ss_pred -C--CHHHHHHHHHHHhH
Q 027573 113 -R--SSRDLFAAKQAYHA 127 (221)
Q Consensus 113 -r--s~~~l~~i~~~Y~~ 127 (221)
| +++++...++.|-.
T Consensus 86 ~~~~~~Eel~~aF~~fD~ 103 (160)
T COG5126 86 KRGDKEEELREAFKLFDK 103 (160)
T ss_pred ccCCcHHHHHHHHHHhCC
Confidence 2 25777777777744
No 36
>PRK10236 hypothetical protein; Provisional
Probab=21.79 E-value=4.7e+02 Score=21.74 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=27.2
Q ss_pred HHHHHHHHhHhhHhhHHHHHhhcccCcHHHHHHHHhcccc
Q 027573 118 LFAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPLVSTFR 157 (221)
Q Consensus 118 l~~i~~~Y~~~yg~~L~~~I~~~~sg~~~~~ll~ll~~~r 157 (221)
|+.|...++..=|.++...++.+.. .|+++|+-+++.-.
T Consensus 63 w~~Ia~elq~fGgnt~~n~lRG~Gv-~YreIL~DVc~~LK 101 (237)
T PRK10236 63 WQLIAGELQHFGGDSIANKLRGHGK-LYRAILLDVSKRLK 101 (237)
T ss_pred HHHHHHHHHHhcchHHHHHHhcCCc-cHHHHHHHHHHHcC
Confidence 5677777777777788877775333 68888887775544
No 37
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=21.10 E-value=3.4e+02 Score=23.80 Aligned_cols=91 Identities=14% Similarity=0.128 Sum_probs=51.8
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHhHHhhcc-------cHHHhhhhhcchhHHHHHHHHh--CCCcHHHHHHHHHhhcc
Q 027573 28 GTNEALIISVLAHRNAAQRKLIREIYNETYGE-------DLLKALDKELSSDFERSVLLWT--LTPAERDAYLANEATKR 98 (221)
Q Consensus 28 gtde~~l~~il~~rs~~q~~~i~~~Y~~~yg~-------~L~~~i~~~~sg~~~~~l~~l~--~~~~~~da~~L~~A~~g 98 (221)
-||-+.+-.+=.+...++++++.+.++..|++ +..++. +.+.+..+++.+-.+ ...+++-.-.|++-++.
T Consensus 25 TTDF~~m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~-d~l~~e~r~~FidFLerScTaEFSGflLYKEl~r 103 (351)
T CHL00185 25 TTDFDEMANYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSW-SNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSR 103 (351)
T ss_pred cccHHHHHhcCCchhHHHHHHHHHHHHhCccccccccChhhhhch-hhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 47778888887888899999999999988864 222211 123344333333221 12346666677777765
Q ss_pred CCCch-HHHHH--HHhcCCHHHHH
Q 027573 99 FTLSN-WVLME--IACTRSSRDLF 119 (221)
Q Consensus 99 ~gtde-~~li~--il~~rs~~~l~ 119 (221)
...+. ..|.+ -+++|.+..-.
T Consensus 104 rlk~~nP~lae~F~lMaRDEARHA 127 (351)
T CHL00185 104 KLKDKNPLLAEGFLLMSRDEARHA 127 (351)
T ss_pred HhccCCcHHHHHHHHHhhhhHHHh
Confidence 43332 23333 34456654433
No 38
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=21.08 E-value=1.1e+02 Score=25.55 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHhHHhhcc--cHHHhhh
Q 027573 41 RNAAQRKLIREIYNETYGE--DLLKALD 66 (221)
Q Consensus 41 rs~~q~~~i~~~Y~~~yg~--~L~~~i~ 66 (221)
-+.+++.+|+++|+..|.. +|.+.++
T Consensus 205 f~~e~i~alr~ayk~lfr~~~~~~e~~~ 232 (260)
T COG1043 205 FSREEIHALRKAYKLLFRSGLTLREALE 232 (260)
T ss_pred CCHHHHHHHHHHHHHHeeCCCCHHHHHH
Confidence 3789999999999999954 5555544
No 39
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=20.71 E-value=1.7e+02 Score=17.93 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=22.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHhcCCCHHHHHHHHHHhHH
Q 027573 16 DAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNE 55 (221)
Q Consensus 16 da~~L~~A~~g~gtde~~l~~il~~rs~~q~~~i~~~Y~~ 55 (221)
+-+.|....+..|.+=..|.+.|.+||+.+ ++..|..
T Consensus 5 Ed~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~---~~~r~~~ 41 (60)
T PF13921_consen 5 EDELLLELVKKYGNDWKKIAEHLGNRTPKQ---CRNRWRN 41 (60)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHSTTS-HHH---HHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHCcCCHHH---HHHHHHH
Confidence 344566666655566678888886698866 4445555
Done!