BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027574
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RWG8|RBP1B_ARATH Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B
PE=1 SV=2
Length = 217
Score = 286 bits (731), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 149/194 (76%), Positives = 170/194 (87%), Gaps = 6/194 (3%)
Query: 11 EEEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKH 70
E+EDTGAQVAPIV+LEEVAVTTGEEDED ILDLK+KLYRFDKDG+QWKERGAGTVK LKH
Sbjct: 22 EDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQWKERGAGTVKFLKH 81
Query: 71 KVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIR 130
+V+GK+RLVMRQSKTLKICANHLV MSVQEHAGNDKSCVWHA D++DGELKDELFCIR
Sbjct: 82 RVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDFSDGELKDELFCIR 141
Query: 131 FGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEENKTEDKS--RAEE--- 185
F SVENCK+FM+ EVAES+++KEE+KDAS TAGLLEKL+VEE ++E K +AEE
Sbjct: 142 FASVENCKAFMQKFKEVAESEEEKEESKDASDTAGLLEKLTVEEKESEKKPVEKAEENKK 201
Query: 186 -EVPKEEKEEEEVP 198
E +E+K EE VP
Sbjct: 202 SEAVEEKKTEESVP 215
>sp|P92985|RBP1C_ARATH Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C
PE=2 SV=1
Length = 219
Score = 278 bits (710), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 128/165 (77%), Positives = 147/165 (89%)
Query: 11 EEEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKH 70
E+EDTGAQVAPIV+LEEVAVTTGEEDEDA+LDLK+K+YRFDK+GNQWKERGAGTVKLLKH
Sbjct: 19 EDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDKEGNQWKERGAGTVKLLKH 78
Query: 71 KVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIR 130
K TGKVRLVMRQSKTLKICANHL+ MSVQEH+GN+KSC+WHA D++DGELKDELFCIR
Sbjct: 79 KETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLWHATDFSDGELKDELFCIR 138
Query: 131 FGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEEN 175
F S+ENCK+FME E+AESQ+ +E+ AGL+E LSVEEN
Sbjct: 139 FASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSVEEN 183
>sp|Q9LMK7|RBP1A_ARATH Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A
PE=1 SV=1
Length = 228
Score = 270 bits (690), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 133/167 (79%), Positives = 149/167 (89%)
Query: 6 EGDHREEEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTV 65
E E+EDTGAQVAPIV+LEEVAVTTGEEDEDA+LDLK+KLYRFDKD NQWKERGAGTV
Sbjct: 15 EAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKERGAGTV 74
Query: 66 KLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDE 125
K LKHK TGK+RLVMRQSKTLKICANH V MSVQEH GN+KSCVWHA D+ADGELKDE
Sbjct: 75 KFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDE 134
Query: 126 LFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSV 172
LFCIRF S+ENCK+FM+ EVAES+++KEE+KDA+ TAGLLEKL+V
Sbjct: 135 LFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAADTAGLLEKLTV 181
>sp|P43487|RANG_HUMAN Ran-specific GTPase-activating protein OS=Homo sapiens GN=RANBP1
PE=1 SV=1
Length = 201
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 113/184 (61%), Gaps = 9/184 (4%)
Query: 5 TEGDHREEEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGA 62
T ++ +E + Q PIV L E + T EEDE+ + ++AKL+RF + D +WKERG
Sbjct: 13 TSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGT 72
Query: 63 GTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGE 121
G VKLLKHK G +RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+ AD+AD
Sbjct: 73 GDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADEC 132
Query: 122 LKDELFCIRFGSVENCKSFM----EMVHEVAESQKKKEENKD--ASATAGLLEKLSVEEN 175
K EL IRF + EN + F E E+ E +KK K+ A A LE LSV+E
Sbjct: 133 PKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKVAEKLEALSVKEE 192
Query: 176 KTED 179
ED
Sbjct: 193 TKED 196
>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=2
Length = 3053
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 9 HREEEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKL 67
H +EED G P+V L +++ V TGEEDE+ +AKL+RFD + +WKERG G VK+
Sbjct: 1156 HGDEEDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDGESKEWKERGIGNVKI 1215
Query: 68 LKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELF 127
L+HK +GK+RL+MR+ + LKICANH + P M + +AG+D+S VWHA DYAD K E
Sbjct: 1216 LRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQL 1275
Query: 128 CIRFGSVENCKSF 140
IRF + E F
Sbjct: 1276 AIRFKTPEEAALF 1288
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 10 REEEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLL 68
+EEE G P+V L + V V++GEE+E + +AKLYR+DKD QWKERG G +K+L
Sbjct: 2138 QEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIKIL 2197
Query: 69 KHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFC 128
++ +VR+VMR+ + LK+CANH + P M++Q G ++ VW A D+ADGE K E
Sbjct: 2198 QNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQTMKGTERVWVWTACDFADGERKIEHLA 2257
Query: 129 IRFGSVENCKSFMEMVHEVAESQKK 153
+RF + SF ++ E +Q+K
Sbjct: 2258 VRFKLQDVADSFKKIFDEAKTAQEK 2282
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 80/120 (66%)
Query: 21 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 80
PIV L EV V +GEEDE+ + +AKLYR+D+D +QWKERG G +K+L H + R++M
Sbjct: 2743 PIVSLPEVEVKSGEEDEEVLFKERAKLYRWDRDVSQWKERGIGDIKILWHTMKKYYRILM 2802
Query: 81 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSF 140
R+ + K+CANH++ M ++ ++ + VW A+DYADGE K E +RF + E +SF
Sbjct: 2803 RRDQVFKVCANHVITKAMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEMTESF 2862
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 90/133 (67%), Gaps = 1/133 (0%)
Query: 9 HREEEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKL 67
++ E+ P+V++ E+V + TGEEDE + + KL+RFD + +QWKERG G +K+
Sbjct: 1840 YKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEISQWKERGLGNLKI 1899
Query: 68 LKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELF 127
LK++V GK+R++MR+ + LK+CANH + M+++ +G+D++ +W A+D++DG+ K E
Sbjct: 1900 LKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQL 1959
Query: 128 CIRFGSVENCKSF 140
+F + E + F
Sbjct: 1960 AAKFKTPELAEEF 1972
>sp|P34022|RANG_MOUSE Ran-specific GTPase-activating protein OS=Mus musculus GN=Ranbp1
PE=1 SV=2
Length = 203
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 110/176 (62%), Gaps = 8/176 (4%)
Query: 5 TEGDHREEEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGA 62
T ++ +E + Q PIV L E + T EEDE+ + ++AKL+RF + D +WKERG
Sbjct: 13 TSTENADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGT 72
Query: 63 GTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGE 121
G VKLLKHK G +RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+ AD+AD
Sbjct: 73 GDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADEC 132
Query: 122 LKDELFCIRFGSVENCKSFM----EMVHEVAESQKKKE-ENKDASATAGLLEKLSV 172
K EL IRF + EN + F E E+ E +KK +N +A A LE LSV
Sbjct: 133 PKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKGPGKNDNAEKVAEKLEALSV 188
>sp|Q3T0M7|RANG_BOVIN Ran-specific GTPase-activating protein OS=Bos taurus GN=RANBP1 PE=2
SV=1
Length = 206
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 93/139 (66%), Gaps = 3/139 (2%)
Query: 5 TEGDHREEEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGA 62
T ++ +E + Q PIV L E + T EEDE+ + ++AKL+RF + D +WKERG
Sbjct: 13 TSTENADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGT 72
Query: 63 GTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGE 121
G VKLLKHK G +RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+ AD+AD
Sbjct: 73 GDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADEC 132
Query: 122 LKDELFCIRFGSVENCKSF 140
K EL IRF + EN + F
Sbjct: 133 PKQELLAIRFLNAENAQKF 151
>sp|P41920|YRB1_YEAST Ran-specific GTPase-activating protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRB1 PE=1
SV=1
Length = 201
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
Query: 21 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 80
P+V LE+V V T EEDE+ + ++AKL+RFD D +WKERG G K LK+K T KVR++M
Sbjct: 67 PVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILM 126
Query: 81 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVENCKS 139
R+ KTLKICANH++ P +++ + G+D+S V+ AD A+GE + F IRFGS EN
Sbjct: 127 RRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADK 186
Query: 140 FMEMVHEVAESQKK 153
F E + E KK
Sbjct: 187 FKEEFEKAQEINKK 200
>sp|Q09717|RANG_SCHPO Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=sbp1 PE=1 SV=1
Length = 215
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Query: 21 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 80
PIVKL V T EE+E ++AKL+RFDK ++WKERG G +LLKHK TGK RLVM
Sbjct: 77 PIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAASEWKERGTGDARLLKHKETGKTRLVM 136
Query: 81 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVENCKS 139
R+ KTLK+CANHL++P M + + G+D+S VW AAD ++GE E F IRF + EN
Sbjct: 137 RRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVAADVSEGEPTAETFAIRFANSENANL 196
Query: 140 FMEMVHEVAESQKK 153
F E + E K
Sbjct: 197 FKENFEKYQEENAK 210
>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2
Length = 3224
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 21 PIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLV 79
P+V L +++ V TGEEDE+ +AKL+RFD + +WKERG G VK+L+HK +GK+RL+
Sbjct: 1174 PVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLL 1233
Query: 80 MRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKS 139
MR+ + LKICANH + P M + +AG+D+S VWHA DYAD K E IRF + E
Sbjct: 1234 MRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAAL 1293
Query: 140 F 140
F
Sbjct: 1294 F 1294
Score = 124 bits (311), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 10 REEEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLL 68
+EEE G P+V L + V V++GEE+E + +AKLYR+DKD QWKERG G +K+L
Sbjct: 2301 QEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIKIL 2360
Query: 69 KHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFC 128
++ +VR+VMR+ + LK+CANH + P M++Q G ++ +W A D+ADGE K E
Sbjct: 2361 QNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWLWTACDFADGERKVEHLA 2420
Query: 129 IRFGSVENCKSFMEMVHEVAESQKK 153
+RF + SF ++ E +Q+K
Sbjct: 2421 VRFKLQDVADSFKKIFDEAKTAQEK 2445
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 87/136 (63%), Gaps = 4/136 (2%)
Query: 21 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 80
PIV L EV V +GEEDE+ + +AKLYR+D+D +QWKERG G +K+L H + R++M
Sbjct: 2914 PIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHTMKNYYRILM 2973
Query: 81 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGS--VENC- 137
R+ + K+CANH++ M ++ ++ + VW A+DYADGE K E +RF + V +C
Sbjct: 2974 RRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEVADCF 3033
Query: 138 -KSFMEMVHEVAESQK 152
K+F E + + QK
Sbjct: 3034 KKTFEECQQNLMKLQK 3049
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
Query: 9 HREEEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKL 67
++ E+ P+V++ E+V + TGEEDE + + KL+RFD + +QWKERG G +K+
Sbjct: 2003 YKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKI 2062
Query: 68 LKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELF 127
LK++V GK+R++MR+ + LK+CANH + M+++ +G+D++ +W A+D++DG+ K E
Sbjct: 2063 LKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQL 2122
Query: 128 CIRFGSVENCKSFMEMVHE 146
+F + E + F + E
Sbjct: 2123 AAKFKTPELAEEFKQKFEE 2141
>sp|P48820|RBP2_BOVIN E3 SUMO-protein ligase RanBP2 (Fragment) OS=Bos taurus GN=RANBP2
PE=2 SV=2
Length = 1085
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 10 REEEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLL 68
+EEE G P+V L + V V++GEE+E + +AKLYR+DKD QWKERG G +K+L
Sbjct: 166 QEEERDGQHFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDAGQWKERGIGDIKIL 225
Query: 69 KHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFC 128
++ +VR+VMR+ + LK+CANH + P M++Q G ++ VW A D+ADGE K E
Sbjct: 226 QNYENKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWVWTACDFADGERKIEHLA 285
Query: 129 IRFGSVENCKSFMEMVHEVAESQKK 153
+RF + SF ++ E +Q+K
Sbjct: 286 VRFKLQDVADSFKKIFDEAKVAQEK 310
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 88/140 (62%)
Query: 21 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 80
PIV L EV V +GEEDE+ + +AKLYR+D++ +QWK+RG G +K+L H V R++M
Sbjct: 775 PIVSLPEVEVKSGEEDEEILFKERAKLYRWDREASQWKDRGVGDIKILWHTVKNYFRILM 834
Query: 81 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSF 140
R+ + K+CANH++ M ++ ++ + VW A+DYADGE K E +RF + E F
Sbjct: 835 RRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEMADCF 894
Query: 141 MEMVHEVAESQKKKEENKDA 160
+ E ++ K ++ +D+
Sbjct: 895 KKKFEECQQNLLKPQKGQDS 914
>sp|Q7Z3J3|RGPD4_HUMAN RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens
GN=RGPD4 PE=2 SV=3
Length = 1758
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 10 REEEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLL 68
+EEE G P+V L + V V++GEE+E + +A+LYR+DKD QWKERG G +K+L
Sbjct: 1326 QEEERDGQYFEPVVPLPDLVEVSSGEENEKVVFSHRAELYRYDKDVGQWKERGIGDIKIL 1385
Query: 69 KHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFC 128
++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW A D+ADGE K E
Sbjct: 1386 QNYDNKQVRIVMRRDQVLKLCANHTITPDMSLQNMKGTERVWVWTACDFADGERKVEHLA 1445
Query: 129 IRFGSVENCKSFMEMVHEVAESQKK 153
+RF + SF ++ E +Q+K
Sbjct: 1446 VRFKLQDVADSFKKIFDEAKTAQEK 1470
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 89/146 (60%), Gaps = 8/146 (5%)
Query: 3 STTEGD-------HREEEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 54
+ T GD ++ E+ P+V++ E+V + GEE E + KL+RFD +
Sbjct: 1015 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVIGEEGEKVLYSQGVKLFRFDAEV 1074
Query: 55 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 114
QWKERG G +K+LK++V GK R++MR+ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1075 RQWKERGLGNLKILKNEVNGKPRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSA 1134
Query: 115 ADYADGELKDELFCIRFGSVENCKSF 140
+D++DG+ K E +F + E + F
Sbjct: 1135 SDFSDGDAKLERLAAKFKTPELAEEF 1160
>sp|P0DJD0|RGPD1_HUMAN RANBP2-like and GRIP domain-containing protein 1 OS=Homo sapiens
GN=RGPD1 PE=2 SV=1
Length = 1748
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 10 REEEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLL 68
+EEE G P+V L + V V++GEE+E + +A+LYR+DKD QWKERG G +K+L
Sbjct: 1310 QEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAELYRYDKDVGQWKERGIGDIKIL 1369
Query: 69 KHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFC 128
++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW A D+ADGE K E
Sbjct: 1370 QNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKVEHLA 1429
Query: 129 IRFGSVENCKSFMEMVHEVAESQKK 153
+RF + SF ++ E +Q+K
Sbjct: 1430 VRFKLQDVADSFKKIFDEAKTAQEK 1454
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 91/146 (62%), Gaps = 8/146 (5%)
Query: 3 STTEGDHREEEDT-------GAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 54
+ T GD +++D P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 999 ANTSGDFEKDDDACKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEI 1058
Query: 55 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 114
+QWKERG G +K+LK++V GK R++MR+ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1059 SQWKERGLGNLKILKNEVNGKPRMLMRRDQVLKVCANHWITTTMNLKPLSGSDRAWMWLA 1118
Query: 115 ADYADGELKDELFCIRFGSVENCKSF 140
+D++DG+ K E +F + E + F
Sbjct: 1119 SDFSDGDAKLERLAAQFKTPELAEEF 1144
>sp|O14715|RGPD8_HUMAN RANBP2-like and GRIP domain-containing protein 8 OS=Homo sapiens
GN=RGPD8 PE=1 SV=2
Length = 1765
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 10 REEEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLL 68
+EEE G P+V L + V V++GEE+E + +A++YR+DKD QWKERG G +K+L
Sbjct: 1325 QEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIKIL 1384
Query: 69 KHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFC 128
++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW A D+ADGE K E
Sbjct: 1385 QNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKVEHLA 1444
Query: 129 IRFGSVENCKSFMEMVHEVAESQKK 153
+RF + SF ++ E +Q+K
Sbjct: 1445 VRFKLQDVADSFKKIFDEAKTAQEK 1469
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 91/146 (62%), Gaps = 8/146 (5%)
Query: 3 STTEGD-------HREEEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 54
+ T GD ++ E+ P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 1014 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEV 1073
Query: 55 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 114
QWKERG G +K+LK++V GK+R++MR+ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1074 RQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSA 1133
Query: 115 ADYADGELKDELFCIRFGSVENCKSF 140
+D++DG+ K E +F + E + F
Sbjct: 1134 SDFSDGDAKLERLAAKFKTPELAEEF 1159
>sp|Q99666|RGPD5_HUMAN RANBP2-like and GRIP domain-containing protein 5/6 OS=Homo sapiens
GN=RGPD5 PE=1 SV=3
Length = 1765
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 10 REEEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLL 68
+EEE G P+V L + V V++GEE+E + +A++YR+DKD QWKERG G +K+L
Sbjct: 1325 QEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIKIL 1384
Query: 69 KHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFC 128
++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW A D+ADGE K E
Sbjct: 1385 QNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKVEHLA 1444
Query: 129 IRFGSVENCKSFMEMVHEVAESQKK 153
+RF + SF ++ E +Q+K
Sbjct: 1445 VRFKLQDVADSFKKIFDEAKTAQEK 1469
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 91/146 (62%), Gaps = 8/146 (5%)
Query: 3 STTEGD-------HREEEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 54
+ T GD ++ E+ P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 1014 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEV 1073
Query: 55 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 114
QWKERG G +K+LK++V GK+R++MR+ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1074 RQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSA 1133
Query: 115 ADYADGELKDELFCIRFGSVENCKSF 140
+D++DG+ K E +F + E + F
Sbjct: 1134 SDFSDGDAKLERLAAKFKTPELAEEF 1159
>sp|P0DJD1|RGPD2_HUMAN RANBP2-like and GRIP domain-containing protein 2 OS=Homo sapiens
GN=RGPD2 PE=2 SV=1
Length = 1756
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Query: 10 REEEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLL 68
+EEE G P+V L + V V++GEE+E + A+LYR+DKD QWKERG G +K+L
Sbjct: 1318 QEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHMAELYRYDKDVGQWKERGIGDIKIL 1377
Query: 69 KHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFC 128
++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW A D+ADGE K E
Sbjct: 1378 QNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKVEHLA 1437
Query: 129 IRFGSVENCKSFMEMVHEVAESQKK 153
+RF + SF ++ E +Q+K
Sbjct: 1438 VRFKLQDVADSFKKIFDEAKTAQEK 1462
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 91/146 (62%), Gaps = 8/146 (5%)
Query: 3 STTEGDHREEEDT-------GAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 54
+ T GD +++D P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 1007 ANTSGDFEKDDDACKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEI 1066
Query: 55 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 114
+QWKERG G +K+LK++V GK R++MR+ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1067 SQWKERGLGNLKILKNEVNGKPRMLMRRDQVLKVCANHWITTTMNLKPLSGSDRAWMWLA 1126
Query: 115 ADYADGELKDELFCIRFGSVENCKSF 140
+D++DG+ K E +F + E + F
Sbjct: 1127 SDFSDGDAKLERLAAQFKTPELAEEF 1152
>sp|A6NKT7|RGPD3_HUMAN RanBP2-like and GRIP domain-containing protein 3 OS=Homo sapiens
GN=RGPD3 PE=2 SV=2
Length = 1758
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 10 REEEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLL 68
+EEE G P+V L + V V++GEE+E + +A+ YR+DKD QWKERG G +K+L
Sbjct: 1326 QEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEFYRYDKDVGQWKERGIGDIKIL 1385
Query: 69 KHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFC 128
++ VR++MR+ + LK+CANH + P MS+Q G ++ VW A D+ADGE K E
Sbjct: 1386 QNYDNKHVRILMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKVEHLA 1445
Query: 129 IRFGSVENCKSFMEMVHEVAESQKK 153
+RF + SF ++ E +Q+K
Sbjct: 1446 VRFKLQDVADSFKKIFDEAKTAQEK 1470
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 92/146 (63%), Gaps = 8/146 (5%)
Query: 3 STTEGD-------HREEEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 54
+ T GD ++ E+ P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 1015 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEV 1074
Query: 55 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 114
+QWKERG G +K+LK++V GKVR++M++ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1075 SQWKERGLGNLKILKNEVNGKVRMLMQREQVLKVCANHWITTTMNLKPLSGSDRAWMWSA 1134
Query: 115 ADYADGELKDELFCIRFGSVENCKSF 140
+D++DG+ K E +F + E + F
Sbjct: 1135 SDFSDGDAKLERLAAKFKTPELAEEF 1160
>sp|Q54KD9|RANG_DICDI Ran-specific GTPase-activating protein homolog OS=Dictyostelium
discoideum GN=ranbp1 PE=1 SV=1
Length = 194
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 82/123 (66%), Gaps = 5/123 (4%)
Query: 23 VKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGN-QWKERGAGTVKLLKHKVTGKVRLVMR 81
+K + V V T EE+ED + +++AKLYRFD D + QWKERG G V+ L+ K + ++R+VMR
Sbjct: 53 LKRDVVEVKTNEENEDTLFEIRAKLYRFDTDPSPQWKERGTGNVRFLEDKDSKRIRVVMR 112
Query: 82 QSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAA-DYADGELK---DELFCIRFGSVENC 137
+ KTLK+C NH + P +S+ E G+DKS VW D++D E +ELF IRF + EN
Sbjct: 113 RDKTLKVCLNHHISPALSLGEMTGSDKSWVWKCPKDFSDEEKPEGVEELFAIRFATPENA 172
Query: 138 KSF 140
F
Sbjct: 173 GLF 175
>sp|Q9CT10|RANB3_MOUSE Ran-binding protein 3 OS=Mus musculus GN=Ranbp3 PE=1 SV=2
Length = 491
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 25 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 80
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 310 LEKVEVITGEEAESNVLQIQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 369
Query: 81 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSF 140
R +L++ N + M Q ++KS A D D +K +F I S + + +
Sbjct: 370 RTQGSLRLILNTKLWAQM--QMDKASEKSIRITATDAEDQGVK--VFLISASSKDTGQLY 425
Query: 141 MEMVHEVAESQKKKEENKDASA 162
+ H + + + E+ ++A A
Sbjct: 426 AALHHRILALRSRAEQEQEAKA 447
>sp|Q9H6Z4|RANB3_HUMAN Ran-binding protein 3 OS=Homo sapiens GN=RANBP3 PE=1 SV=1
Length = 567
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 25 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 80
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 386 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 445
Query: 81 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSF 140
R +L++ N + M + + ++KS A D D +K +F I S + + +
Sbjct: 446 RTQGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQGVK--VFLISASSKDTGQLY 501
Query: 141 MEMVHEVAESQKKKEENKDA 160
+ H + + + E+ ++A
Sbjct: 502 AALHHRILALRSRVEQEQEA 521
>sp|Q5R4Y2|RANB3_PONAB Ran-binding protein 3 OS=Pongo abelii GN=RANBP3 PE=2 SV=1
Length = 494
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 25 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 80
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 313 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 372
Query: 81 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSF 140
R +L++ N + M + + ++KS A D D +K +F I S + + +
Sbjct: 373 RTQGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQVVK--VFLISASSKDTGQLY 428
Query: 141 MEMVHEVAESQKKKEENKDA 160
+ H + + + E+ ++A
Sbjct: 429 AALHHRILALRSRVEQEQEA 448
>sp|Q4R4T9|RANB3_MACFA Ran-binding protein 3 OS=Macaca fascicularis GN=RANBP3 PE=2 SV=1
Length = 499
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 25 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 80
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 318 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 377
Query: 81 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSF 140
R +L++ N + M + + ++KS A D D +K +F I S + + +
Sbjct: 378 RTQGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQGVK--VFLISASSKDTGQLY 433
Query: 141 MEMVHEVAESQKKKEENKDA 160
+ H + + + E+ ++A
Sbjct: 434 AALHHRILALRSRVEQEQEA 453
>sp|Q86VV4|RNB3L_HUMAN Ran-binding protein 3-like OS=Homo sapiens GN=RANBP3L PE=2 SV=2
Length = 465
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 25 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 80
LE++ V TGEE E +L + KL+ F+K W ERG GT++L T + RL+M
Sbjct: 284 LEKIDVITGEETEHNVLKINCKLFIFNKTTQSWIERGRGTLRLNDTASTDCGTLQSRLIM 343
Query: 81 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSF 140
R +L++ N + M +Q N K+ A D D +K +F I+ + + +
Sbjct: 344 RNQGSLRLILNSKLWAQMKIQR--ANHKNVRITATDLEDYSIK--IFLIQASAQDTAYLY 399
Query: 141 MEMVHEVAESQ---KKKEENK--DASATAGLLEKLSVEEN 175
+ H + Q K+++ N+ S TA L S +EN
Sbjct: 400 AAIHHRLVALQSFNKQRDVNQAESLSETAQQLNCESCDEN 439
>sp|P40517|YRB2_YEAST Ran-specific GTPase-activating protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRB2 PE=1
SV=1
Length = 327
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 13 EDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK- 71
EDT + P+ KL++ V +GEE E+ I + AKLY+ WKERG G +K+ K K
Sbjct: 189 EDTKDKPKPL-KLQKQEVKSGEESEECIYQVNAKLYQLSNIKEGWKERGVGIIKINKSKD 247
Query: 72 VTGKVRLVMRQSKTLKICANHLVLPMMSVQ 101
K R+VMR LK+ N ++ +VQ
Sbjct: 248 DVEKTRIVMRSRGILKVILNIQLVKGFTVQ 277
>sp|P32499|NUP2_YEAST Nucleoporin NUP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP2 PE=1 SV=2
Length = 720
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 3 STTEGDHREEEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGA 62
STTE E +D A + + + + GEEDE A+ KAKL F+ + + RG
Sbjct: 572 STTEATGNESQDATKVDATPEESKPINLQNGEEDEVALFSQKAKLMTFNAETKSYDSRGV 631
Query: 63 GTVKLLKHK-VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGE 121
G +KLLK K KVRL+ R + N V+ + A + + + ADG+
Sbjct: 632 GEMKLLKKKDDPSKVRLLCRSDGMGNVLLNATVVDSFKYEPLAPGNDNLIKAPTVAADGK 691
Query: 122 LKDELFCIRFGSVENCKSFMEMVHEV 147
L + ++F E +SF + + +
Sbjct: 692 L--VTYIVKFKQKEEGRSFTKAIEDA 715
>sp|Q6PDH4|RNB3L_MOUSE Ran-binding protein 3-like OS=Mus musculus GN=Ranbp3l PE=2 SV=1
Length = 491
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 25 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLL----KHKVTGKVRLVM 80
LE++ V TGEE E +L + K++ F+K W ERG G ++L + T + RL+M
Sbjct: 309 LEKIDVITGEETEHNVLKINCKIFVFNKATESWSERGQGILRLNDTAGRECGTLQSRLIM 368
Query: 81 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIR 130
R +L++ N + M +Q + K+ A D D +K +F I+
Sbjct: 369 RNQGSLRLVLNSRLWAQMKIQR--ASQKNLRITATDLEDDGIK--IFLIQ 414
>sp|Q9USL4|NUP61_SCHPO Nucleoporin nup61 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup61 PE=1 SV=2
Length = 549
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 33 GEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN 91
GEE+ED++ + +AK+YRFD + + G G +K+ + TG R++ R + K+ N
Sbjct: 432 GEENEDSVFETRAKIYRFDATSKSYSDIGIGPLKINVDRDTGSARILARVEGSGKLLLN 490
>sp|Q09146|HBA1_SCHPO Brefeldin A resistance protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hba1 PE=1 SV=1
Length = 399
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 24 KLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVK--LLKHKVTGKVRLVMR 81
+L + + TGEE+E++I ++A+LY + WKERG G +K + K + +G RL+MR
Sbjct: 262 QLSDSEIITGEEEEESIFSVRARLYVVADEKKTWKERGQGILKVNVPKQRGSGSGRLLMR 321
Query: 82 QSKTLKICANHLVLPMMS 99
++ N + MS
Sbjct: 322 NDAVHRVIMNVPLFQGMS 339
>sp|Q8SSI6|YRB1_ENCCU Ran-specific GTPase-activating protein 1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=YRB1 PE=1 SV=1
Length = 219
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 35 EDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLV 94
+ ++ + + KLY F ++ +ER GT+ + H + ++ M + + ++ NH +
Sbjct: 88 QSDEILFKARCKLYYFSEETKALEERAEGTMIIEMHSKSNLAKITMFRDQIGRLGCNHFI 147
Query: 95 LPMMSVQEHAGNDKSCVWHAA-DYADGEL---KDELFCIRFGSVENCKSFME 142
P Q H +W + D + + K +LF ++F S E+ K F E
Sbjct: 148 NPRFKAQPHGKVSNGWMWMSTEDTVETDALRKKIQLFVVKFYSEEDFKRFGE 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.304 0.123 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,280,408
Number of Sequences: 539616
Number of extensions: 3793801
Number of successful extensions: 82669
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1715
Number of HSP's successfully gapped in prelim test: 1450
Number of HSP's that attempted gapping in prelim test: 37994
Number of HSP's gapped (non-prelim): 25215
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 59 (27.3 bits)