BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027576
         (221 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score =  166 bits (421), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 93/212 (43%), Positives = 122/212 (57%), Gaps = 7/212 (3%)

Query: 8   FSTDFVMGGXXXXXXXXXXXPIERVKLLLQNQGEMIKRGQLRRPYMGVGDCFRRVLREDG 67
           F  DF+ GG           PIERVKLLLQ Q    K+    + Y G+ DC  R+ +E G
Sbjct: 7   FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQ-HASKQISAEKQYKGIIDCVVRIPKEQG 65

Query: 68  LLSFWRGNQANVIRYFPTQAFNFAFKGYFKNLF-GRSKEKDGYIKWFAGNVXXXXXXXXX 126
            LSFWRGN ANVIRYFPTQA NFAFK  +K +F G       + ++FAGN+         
Sbjct: 66  FLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGAT 125

Query: 127 XXLFLYHLDYARTRLGTDARECLISGQRQFKGLLDVYSKTLSSDGIGGLYRGFGVSIIGI 186
              F+Y LD+ARTRL  D  +   + QR+F GL +  +K   SDG+ GLY+GF VS+ GI
Sbjct: 126 SLCFVYPLDFARTRLAADVGKG--AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183

Query: 187 TFYRGMYFGLYDTMKPIILVGPLEVTFYILIN 218
             YR  YFG+YDT K ++   P     +I+++
Sbjct: 184 IIYRAAYFGVYDTAKGML---PDPKNVHIIVS 212



 Score = 35.0 bits (79), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 39/205 (19%), Positives = 74/205 (36%), Gaps = 27/205 (13%)

Query: 8   FSTDFVMGGXXXXXXXXXXXPIERVKLLLQNQGEMIKRGQLRRPYMGVGDCFRRVLREDG 67
           F+ +   GG           P++  +  L      + +G  +R + G+G+C  ++ + DG
Sbjct: 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAAD---VGKGAAQREFTGLGNCITKIFKSDG 168

Query: 68  LLSFWRGNQANVIRYFPTQAFNFAFKGYFKNLFGRSKEKDGYIKWFAGNVXXXXXXXXXX 127
           L   ++G   +V      +A  F      K +    K     + W               
Sbjct: 169 LRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQT-----VTAVA 223

Query: 128 XLFLYHLDYARTRLGTDARECLISGQR----QFKGLLDVYSKTLSSDGIGGLYRGFGVSI 183
            L  Y  D  R R+       + SG++     + G +D + K    +G    ++G   ++
Sbjct: 224 GLVSYPFDTVRRRM------MMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNV 277

Query: 184 IGITFYRGM----YFGLYDTMKPII 204
           +     RGM       LYD +K  +
Sbjct: 278 L-----RGMGGAFVLVLYDEIKKFV 297


>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 35.8 bits (81), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 11/181 (6%)

Query: 28  PIERVKLLLQNQGEM--IKRGQLRRPYMGVGDCFRRVLREDGLLSFWRGNQANVIRYFPT 85
           P++  K+ LQ QGE   + R      Y GV      ++R +G  S + G  A + R    
Sbjct: 21  PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSF 80

Query: 86  QAFNFAFKGYFKNLFGRSKEKDGY-IKWFAGNVXXXXXXXXXXXLFLYHLDYARTRLGTD 144
            +         K  + +  E  G   +  AG+                  D  + R    
Sbjct: 81  ASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQ-----PTDVVKVRFQAQ 135

Query: 145 ARECLISGQRQFKGLLDVYSKTLSSDGIGGLYRGFGVSIIGITFYRGMYFGLYDTMKPII 204
           AR     G R+++  ++ Y      +GI GL++G   ++             YD +K  +
Sbjct: 136 ARA---GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTL 192

Query: 205 L 205
           L
Sbjct: 193 L 193



 Score = 26.9 bits (58), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 129 LFLYHLDYARTRL---GTDARECLISGQRQFKGLLDVYSKTLSSDGIGGLYRGFGVSIIG 185
           L  + LD A+ RL   G        +   Q++G+L      + ++G   LY G    +  
Sbjct: 17  LITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQR 76

Query: 186 ITFYRGMYFGLYDTMK 201
              +  +  GLYD++K
Sbjct: 77  QMSFASVRIGLYDSVK 92


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.147    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,047,219
Number of Sequences: 62578
Number of extensions: 233311
Number of successful extensions: 482
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 8
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)