Query 027576
Match_columns 221
No_of_seqs 121 out of 1225
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 20:22:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 4.9E-41 1.7E-45 272.3 17.9 201 3-206 2-203 (297)
2 2lck_A Mitochondrial uncouplin 100.0 1.8E-40 6.1E-45 269.7 17.6 188 5-206 101-288 (303)
3 1okc_A ADP, ATP carrier protei 100.0 8.2E-40 2.8E-44 265.1 18.2 187 7-204 111-297 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.5E-39 5E-44 264.3 15.1 191 10-207 3-195 (303)
5 3f2e_A SIRV coat protein; four 34.8 32 0.0011 21.0 2.6 34 50-83 6-43 (100)
6 3tgu_G UQCRQ, mitochondrial ub 29.4 63 0.0022 20.0 3.4 40 66-105 32-71 (81)
7 2acm_A Mucin-1; auto-catalytic 25.1 18 0.00061 20.9 0.3 20 157-176 40-59 (66)
8 1pp9_G Ubiquinol-cytochrome C 24.3 1.1E+02 0.0038 18.8 3.9 40 66-105 32-71 (81)
9 2l5r_A Antimicrobial peptide a 21.4 71 0.0024 14.4 2.2 20 60-80 3-22 (26)
10 4b19_A PEPA1; toxin, toxin apo 19.9 26 0.0009 17.2 0.3 23 113-135 3-25 (30)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.9e-41 Score=272.31 Aligned_cols=201 Identities=51% Similarity=0.854 Sum_probs=171.9
Q ss_pred CcccchHHHHHHhhHHHHHHHHhhchhhHHHHHHHcCCCcccccCCCCCCCCHHHHHHHHHHhhhHHHhhhcchHHHHHH
Q 027576 3 KTSERFSTDFVMGGAAAIMAKSAAAPIERVKLLLQNQGEMIKRGQLRRPYMGVGDCFRRVLREDGLLSFWRGNQANVIRY 82 (221)
Q Consensus 3 ~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~ 82 (221)
+++.+.+..+++|++|++++.++++|+|++|+|+|++........ ...|++.++++++|+++||++|||||+.+++++.
T Consensus 2 ~~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~-~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~ 80 (297)
T 1okc_A 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISA-EKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRY 80 (297)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCG-GGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccccccc-ccccccHHHHHHHHHhccchhheecccHHHHHHH
Confidence 345678899999999999999999999999999999864221111 3468999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHhcccc-CCCchhhHhHHHHHHHhHHHHHHHhhhchHHHHHHHhhcccccccccccccCCCHHH
Q 027576 83 FPTQAFNFAFKGYFKNLFGRSK-EKDGYIKWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDARECLISGQRQFKGLLD 161 (221)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~dviktr~q~~~~~~~~~~~~~~~~~~~ 161 (221)
++..+++|.+||.+|+.+.+.. .+++........+++|++||++++++++|+|+||+|+|++... ......|+++++
T Consensus 81 ~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~ 158 (297)
T 1okc_A 81 FPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK--GAAQREFTGLGN 158 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--STTTCSCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC--CCcCcCCCCHHH
Confidence 9999999999999999654332 2222223456789999999999999999999999999998642 122457899999
Q ss_pred HHHHHhhhcCccccccchhhhhhhhhhhhhhhHhhHHhhHHHHhc
Q 027576 162 VYSKTLSSDGIGGLYRGFGVSIIGITFYRGMYFGLYDTMKPIILV 206 (221)
Q Consensus 162 ~~~~i~~~~G~~gly~G~~~~~lr~~~~~~i~~~~ye~~~~~~~~ 206 (221)
++++|+++||++|||||+.++++|.++.++++|.+||.+|+.+.+
T Consensus 159 ~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 159 CITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999998765
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.8e-40 Score=269.73 Aligned_cols=188 Identities=20% Similarity=0.325 Sum_probs=168.8
Q ss_pred ccchHHHHHHhhHHHHHHHHhhchhhHHHHHHHcCCCcccccCCCCCCCCHHHHHHHHHHhhhHHHhhhcchHHHHHHhh
Q 027576 5 SERFSTDFVMGGAAAIMAKSAAAPIERVKLLLQNQGEMIKRGQLRRPYMGVGDCFRRVLREDGLLSFWRGNQANVIRYFP 84 (221)
Q Consensus 5 ~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~ 84 (221)
..+.+..+++|++|++++.++++|+|++|+|+|++... .....|++.++++++|+++||++|||||+.+++++.++
T Consensus 101 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~----~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 176 (303)
T 2lck_A 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA----GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAI 176 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC----CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc----CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHH
Confidence 35678899999999999999999999999999998642 11346899999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHhccccCCCchhhHhHHHHHHHhHHHHHHHhhhchHHHHHHHhhcccccccccccccCCCHHHHHH
Q 027576 85 TQAFNFAFKGYFKNLFGRSKEKDGYIKWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDARECLISGQRQFKGLLDVYS 164 (221)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~~ 164 (221)
..+++|.+||.+|+.+.+....+. .....+++|++||++++++++|+|+||+|||++.. ..|++++++++
T Consensus 177 ~~~i~f~~ye~~k~~l~~~~~~~~---~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-------~~y~~~~~~~~ 246 (303)
T 2lck_A 177 VNCAELVTYDLIKDTLLKANLMTD---DLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-------GQYHSAGHCAL 246 (303)
T ss_dssp HHHHHHHHHHHHHHTTTTTTSCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-------SSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCC---chHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-------cccCCHHHHHH
Confidence 999999999999998866443222 25578999999999999999999999999999764 35999999999
Q ss_pred HHhhhcCccccccchhhhhhhhhhhhhhhHhhHHhhHHHHhc
Q 027576 165 KTLSSDGIGGLYRGFGVSIIGITFYRGMYFGLYDTMKPIILV 206 (221)
Q Consensus 165 ~i~~~~G~~gly~G~~~~~lr~~~~~~i~~~~ye~~~~~~~~ 206 (221)
+|+++||++|||||+.++++|.+|..+++|.+||.+|+.+.+
T Consensus 247 ~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 247 TMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988765
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=8.2e-40 Score=265.10 Aligned_cols=187 Identities=19% Similarity=0.326 Sum_probs=159.6
Q ss_pred chHHHHHHhhHHHHHHHHhhchhhHHHHHHHcCCCcccccCCCCCCCCHHHHHHHHHHhhhHHHhhhcchHHHHHHhhhh
Q 027576 7 RFSTDFVMGGAAAIMAKSAAAPIERVKLLLQNQGEMIKRGQLRRPYMGVGDCFRRVLREDGLLSFWRGNQANVIRYFPTQ 86 (221)
Q Consensus 7 ~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 86 (221)
+.+..+++|++|++++.++++|+|++|+|+|++.... .....|+++++++++|+++||++|||||+.+++++.++..
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~---~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 187 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG---AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYR 187 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS---TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC---CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHH
Confidence 3567899999999999999999999999999985321 1134689999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHhccccCCCchhhHhHHHHHHHhHHHHHHHhhhchHHHHHHHhhcccccccccccccCCCHHHHHHHH
Q 027576 87 AFNFAFKGYFKNLFGRSKEKDGYIKWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDARECLISGQRQFKGLLDVYSKT 166 (221)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~~~i 166 (221)
+++|.+||.+|+.+.+.... .....+++|+++|++++++++|+|+||+|||++... ......|+++++++++|
T Consensus 188 ~~~f~~ye~~k~~~~~~~~~-----~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~--~~~~~~y~~~~~~~~~i 260 (297)
T 1okc_A 188 AAYFGVYDTAKGMLPDPKNV-----HIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR--KGADIMYTGTVDCWRKI 260 (297)
T ss_dssp HHHHHHHHHHHHSSCGGGCS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC--CGGGCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCc-----cHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCC--CCCCCCCCCHHHHHHHH
Confidence 99999999999977543221 256778899999999999999999999999997642 12245799999999999
Q ss_pred hhhcCccccccchhhhhhhhhhhhhhhHhhHHhhHHHH
Q 027576 167 LSSDGIGGLYRGFGVSIIGITFYRGMYFGLYDTMKPII 204 (221)
Q Consensus 167 ~~~~G~~gly~G~~~~~lr~~~~~~i~~~~ye~~~~~~ 204 (221)
+++||++|||||+.++++|. +..++.|.+||.+|+++
T Consensus 261 ~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 261 AKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99999999999999999996 57899999999999764
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.5e-39 Score=264.35 Aligned_cols=191 Identities=23% Similarity=0.357 Sum_probs=167.8
Q ss_pred HHHHHhhHHHHHHHHhhchhhHHHHHHHcCCCcccc--cCCCCCCCCHHHHHHHHHHhhhHHHhhhcchHHHHHHhhhhh
Q 027576 10 TDFVMGGAAAIMAKSAAAPIERVKLLLQNQGEMIKR--GQLRRPYMGVGDCFRRVLREDGLLSFWRGNQANVIRYFPTQA 87 (221)
Q Consensus 10 ~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~ 87 (221)
..+++|++|++++.++++|+|++|+|+|++...... ......|++.++++++|+++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 478999999999999999999999999998652110 011246899999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhccccCCCchhhHhHHHHHHHhHHHHHHHhhhchHHHHHHHhhcccccccccccccCCCHHHHHHHHh
Q 027576 88 FNFAFKGYFKNLFGRSKEKDGYIKWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDARECLISGQRQFKGLLDVYSKTL 167 (221)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~~~i~ 167 (221)
++|.+||.+|+.+.+...+ ......+++|+++|++++++++|+|+||+|+|++... .....|++.++++++|+
T Consensus 83 i~f~~ye~~k~~~~~~~~~----~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEH----AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIA 155 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSS----CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---CCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcC----CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---CCCCCCCCHHHHHHHHH
Confidence 9999999999988654221 2367889999999999999999999999999998742 22457999999999999
Q ss_pred hhcCccccccchhhhhhhhhhhhhhhHhhHHhhHHHHhcC
Q 027576 168 SSDGIGGLYRGFGVSIIGITFYRGMYFGLYDTMKPIILVG 207 (221)
Q Consensus 168 ~~~G~~gly~G~~~~~lr~~~~~~i~~~~ye~~~~~~~~~ 207 (221)
++||++|||||+.++++|.++..+++|.+||.+|+.+.+.
T Consensus 156 ~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998763
No 5
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=34.85 E-value=32 Score=21.03 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHhhhH----HHhhhcchHHHHHHh
Q 027576 50 RPYMGVGDCFRRVLREDGL----LSFWRGNQANVIRYF 83 (221)
Q Consensus 50 ~~~~~~~~~~~~i~~~~G~----~gly~G~~~~~~~~~ 83 (221)
+++.+.-.-+..++.+-|+ +.+|+|+...+.+.+
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 4566666666666666554 678888887766543
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=29.45 E-value=63 Score=19.97 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=29.4
Q ss_pred hhHHHhhhcchHHHHHHhhhhhhhhhhHHHHHHHhccccC
Q 027576 66 DGLLSFWRGNQANVIRYFPTQAFNFAFKGYFKNLFGRSKE 105 (221)
Q Consensus 66 ~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
+|+...||-+...++..+|..++.+.+|++.++.-...+.
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~r 71 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKR 71 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455556666667888888888999999999887655444
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=25.11 E-value=18 Score=20.94 Aligned_cols=20 Identities=15% Similarity=0.401 Sum_probs=17.1
Q ss_pred CCHHHHHHHHhhhcCccccc
Q 027576 157 KGLLDVYSKTLSSDGIGGLY 176 (221)
Q Consensus 157 ~~~~~~~~~i~~~~G~~gly 176 (221)
+++.+.+.+||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788899999999998886
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=24.29 E-value=1.1e+02 Score=18.82 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=30.7
Q ss_pred hhHHHhhhcchHHHHHHhhhhhhhhhhHHHHHHHhccccC
Q 027576 66 DGLLSFWRGNQANVIRYFPTQAFNFAFKGYFKNLFGRSKE 105 (221)
Q Consensus 66 ~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
+|+...+|-+...++..++..++.+.+|++.++.....+.
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~r 71 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKR 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhC
Confidence 5566677777778888888888999999999887655444
No 9
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=21.45 E-value=71 Score=14.42 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=12.6
Q ss_pred HHHHHhhhHHHhhhcchHHHH
Q 027576 60 RRVLREDGLLSFWRGNQANVI 80 (221)
Q Consensus 60 ~~i~~~~G~~gly~G~~~~~~ 80 (221)
++|++ .|+..|-+|..+.+.
T Consensus 3 keifk-aglgslvkgiaahva 22 (26)
T 2l5r_A 3 KEIFK-AGLGSLVKGIAAHVA 22 (26)
T ss_dssp HHHHH-HHHHHHHHHHHHHHC
T ss_pred HHHHH-HhHHHHHHHHHHHHh
Confidence 45544 577777777766543
No 10
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=19.88 E-value=26 Score=17.17 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=16.7
Q ss_pred hHHHHHHHhHHHHHHHhhhchHH
Q 027576 113 FAGNVASGSAAGATTSLFLYHLD 135 (221)
Q Consensus 113 ~~~~~~~g~~ag~~~~~v~~P~d 135 (221)
....+++..++|++.++++|=++
T Consensus 3 ifv~iia~visGcivalF~hWL~ 25 (30)
T 4b19_A 3 IFVHIIAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp GGTSSTTTTHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHHHHHHH
Confidence 34566778888988888877554
Done!