BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027577
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 395 bits (1016), Expect = e-111, Method: Compositional matrix adjust.
Identities = 183/223 (82%), Positives = 204/223 (91%), Gaps = 2/223 (0%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 135 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 194
Query: 61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 195 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 254
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
GVLIVNNARGAIM+ QAVVDA SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 255 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 314
Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
TTID LRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 315 TTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 357
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 395 bits (1016), Expect = e-111, Method: Compositional matrix adjust.
Identities = 183/223 (82%), Positives = 204/223 (91%), Gaps = 2/223 (0%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 129 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 188
Query: 61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 189 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 248
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
GVLIVNNARGAIM+ QAVVDA SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 249 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 308
Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
TTID LRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 309 TTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 351
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 217 bits (552), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 151/224 (67%), Gaps = 9/224 (4%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
M +L+LVRNF+P H Q+I+ +W VA +A AYD+EGKT+ T+G GRIG +L+RL PFN
Sbjct: 130 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNP 189
Query: 60 CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
LLY+D + E++ GA+ E+++ ++ + DIV VN PL T+G+ +K+ ++K K
Sbjct: 190 KELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 249
Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
KG +VN ARGAI + V A SG + GY GDVW PQPAPKDHPWR M N+ AM
Sbjct: 250 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 309
Query: 175 TPHVSGTTID--LRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 215
TPH SGTT+D RYA G K++L+ +F G+ D+ Q+ I+ GE
Sbjct: 310 TPHYSGTTLDAQTRYAQGTKNILESFFTGKFDYRPQDIILLNGE 353
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 214 bits (544), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 150/224 (66%), Gaps = 9/224 (4%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
M +L+LVRNF+P H Q+I+ +W VA +A AYD+EGKT+ T+G GRIG +L+RL PFN
Sbjct: 129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNP 188
Query: 60 CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
LLY+D + E++ GA+ E+++ ++ + DIV VN PL T+G+ +K+ ++K K
Sbjct: 189 KELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248
Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
KG +VN ARGAI + V A SG + GY GDVW PQPAPKDHPWR M N+ AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308
Query: 175 TPHVSGTTID--LRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 215
TPH SGTT+D RYA G ++L+ +F G+ D+ Q+ I+ GE
Sbjct: 309 TPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGE 352
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 211 bits (537), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 135/219 (61%), Gaps = 2/219 (0%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
M IL LVRN+LP H G WN+A AYDLE VGTV GRIG +L+RL PF+
Sbjct: 157 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 216
Query: 61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
+L Y DR ++ +EKE + + M P CD+V +N PL +T M + + + K+
Sbjct: 217 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 276
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
G IVN ARG + D AV A SG +AGY+GDVW PQPAPKDHPWR MP MTPH+SG
Sbjct: 277 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 336
Query: 181 TTI--DLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 217
TT+ RYAAG +++L+ +F+G + IV+ G LA
Sbjct: 337 TTLTAQARYAAGTREILEXFFEGRPIRDEYLIVQGGALA 375
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 210 bits (535), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 135/219 (61%), Gaps = 2/219 (0%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
M IL LVRN+LP H G WN+A AYDLE VGTV GRIG +L+RL PF+
Sbjct: 156 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 215
Query: 61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
+L Y DR ++ +EKE + + M P CD+V +N PL +T M + + + K+
Sbjct: 216 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 275
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
G IVN ARG + D AV A SG +AGY+GDVW PQPAPKDHPWR MP MTPH+SG
Sbjct: 276 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 335
Query: 181 TTI--DLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 217
TT+ RYAAG +++L+ +F+G + IV+ G LA
Sbjct: 336 TTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 374
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 210 bits (535), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 135/219 (61%), Gaps = 2/219 (0%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
M IL LVRN+LP H G WN+A AYDLE VGTV GRIG +L+RL PF+
Sbjct: 157 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 216
Query: 61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
+L Y DR ++ +EKE + + M P CD+V +N PL +T M + + + K+
Sbjct: 217 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 276
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
G IVN ARG + D AV A SG +AGY+GDVW PQPAPKDHPWR MP MTPH+SG
Sbjct: 277 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 336
Query: 181 TTI--DLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 217
TT+ RYAAG +++L+ +F+G + IV+ G LA
Sbjct: 337 TTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 375
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 137/219 (62%), Gaps = 2/219 (0%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
M +L LVRN++P H +G WN+A R+YD+EG VGTV GRIG +L+ L PF+
Sbjct: 156 MMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDM 215
Query: 61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
+L Y DR ++ +EKE + + M CD+V +N PL +T M + + + K+
Sbjct: 216 HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKR 275
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
G +VN ARG + D A+V A SG +AGY+GDVW PQPAP DHPWR MP+ MTPH+SG
Sbjct: 276 GAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISG 335
Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 217
T++ RYAAG +++L+ YF+G + IV+ G LA
Sbjct: 336 TSLSAQTRYAAGTREILECYFEGRPIRDEYLIVQGGGLA 374
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 137/219 (62%), Gaps = 2/219 (0%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
M +L LVRN++P H +G WN+A R+YD+EG VGTV GRIG +L+ L PF+
Sbjct: 157 MMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDM 216
Query: 61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
+L Y DR ++ +EKE + + M CD+V +N PL +T M + + + K+
Sbjct: 217 HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKR 276
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
G +VN ARG + D A+V A SG +AGY+GDVW PQPAP DHPWR MP+ MTPH+SG
Sbjct: 277 GAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISG 336
Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 217
T++ RYAAG +++L+ YF+G + IV+ G LA
Sbjct: 337 TSLSAQTRYAAGTREILECYFEGRPIRDEYLIVQGGGLA 375
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 9/206 (4%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAY----RAYDLEGKTVGTVGCGRIGKLLLQRLKPF 58
I+ L+R + GEW + R L GK VG +G G IGK + +RL PF
Sbjct: 109 IINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPF 168
Query: 59 NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
L Y R + +EKE A++ D+D +L K DIV++ PLT T + +++R+ K+
Sbjct: 169 GVKLYYWSRHR-KVNVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKL 226
Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
+ G +VN RGA++D +AV +A G + GY+ DV+ +P + ++Y +TPH
Sbjct: 227 E-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHY 285
Query: 179 SGTTIDLRYAAGVK--DMLDRYFKGE 202
+G ++ + G + + L + +GE
Sbjct: 286 AGLALEAQEDVGFRAVENLLKVLRGE 311
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 5/180 (2%)
Query: 28 AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87
++ ++ GKTVG VG GRIG+L+ QR+ F ++ +D + P + G + LD
Sbjct: 133 SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLS-LD 190
Query: 88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
+L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D A+ DA + GH+
Sbjct: 191 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 250
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAG--VKDMLDRYFKGEDFP 205
DV+ +P D P + +TPH+ +T + + AG V + + GE P
Sbjct: 251 RAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 309
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 5/180 (2%)
Query: 28 AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87
++ ++ GKTVG VG GRIG+L+ QR+ F ++ +D + P + G + LD
Sbjct: 134 SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLS-LD 191
Query: 88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
+L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D A+ DA + GH+
Sbjct: 192 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 251
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAG--VKDMLDRYFKGEDFP 205
DV+ +P D P + +TPH+ +T + + AG V + + GE P
Sbjct: 252 RAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 310
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 109/184 (59%), Gaps = 8/184 (4%)
Query: 8 RNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
R+ + G V SGEW GVA+ YD+ GKT+G +G GRIG+ + +R K FN +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRI 176
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
LY+ R + + ++E+E A+F+ L+ +L + D VV+ PLT +T + +++R+ MKK
Sbjct: 177 LYYSRTRKE-EVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTA 234
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
+++N ARG ++DT A+V A G IAG DV+ +P + ++ + N +TPH+ +
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFK-LDNVVLTPHIGSAS 293
Query: 183 IDLR 186
R
Sbjct: 294 FGAR 297
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 10/166 (6%)
Query: 42 VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 101
VG GRIG+ + +R F ++YH R K F L+ +L + D+V ++TP
Sbjct: 150 VGMGRIGQAVAKRALAFGMRVVYHARTP------KPLPYPFL-SLEELLKEADVVSLHTP 202
Query: 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP 161
LT +T + +++R+ MK+G +++N ARGA++DT+A+V+A GH+ G DV +P+P P
Sbjct: 203 LTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLP 261
Query: 162 KDHPWRYMPNQAMTPHV--SGTTIDLRYAAGVKDMLDRYFKGEDFP 205
HP +PN +TPH+ +G T R A + L +G + P
Sbjct: 262 PGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPP 307
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 96/160 (60%), Gaps = 2/160 (1%)
Query: 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
+LEGKT+G +G GRIG + + N+L +D + + KE KF DL+T+L +
Sbjct: 139 ELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP-NEERAKEVNGKFV-DLETLLKE 196
Query: 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
D+V ++ PL E T + +++R+ MKK +++N +RG ++DT A+V A G IAG
Sbjct: 197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGL 256
Query: 153 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVK 192
DV+ +P PKDHP N +TPH+ +T++ + AGV+
Sbjct: 257 DVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVE 296
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 4/175 (2%)
Query: 17 VISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 75
V SG W G L G+ +G G GRIG+ + R + F + YH+R ++ LE
Sbjct: 153 VRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTRLSHALE 212
Query: 76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT 135
+ GA + + LD++L DI ++ P + +G D DRIAK+ +G +++N +RG +++
Sbjct: 213 E--GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLIND 270
Query: 136 QAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAG 190
A+++A S H+ DV+ +PA D +R + N +TPH+ T + R A G
Sbjct: 271 DALIEALRSKHLFAAGLDVFANEPA-IDPRYRSLDNIFLTPHIGSATHETRDAXG 324
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 108/184 (58%), Gaps = 8/184 (4%)
Query: 8 RNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
R+ + G V SGEW GVA+ YD+ GKT+G +G GRIG+ + +R K FN +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRI 176
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
LY+ R + + ++E+E A+F+ L+ +L + D VV+ PLT +T + +++R+ KK
Sbjct: 177 LYYSRTRKE-EVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTA 234
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
+++N ARG ++DT A+V A G IAG DV+ +P + ++ + N +TPH+ +
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFK-LDNVVLTPHIGSAS 293
Query: 183 IDLR 186
R
Sbjct: 294 FGAR 297
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 5/188 (2%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
I+ L R + G+W + +L GKT+G +G GRIG+ + R++ F
Sbjct: 134 IMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKT 191
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
+ +D + + P++ G + + L+ + P CD + V+TPL T G+ + + A+ KKGV
Sbjct: 192 IGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGV 249
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
+VN ARG I+D A++ A SG AG + DV+ +P P+D N PH+ +T
Sbjct: 250 RVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGAST 308
Query: 183 IDLRYAAG 190
+ + G
Sbjct: 309 KEAQSRCG 316
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 11/182 (6%)
Query: 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDT-- 88
Y L TVG +G GRIG+ + +RLKPF LY R Q E A+F+ + +
Sbjct: 151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGR-----QPRPEEAAEFQAEFVSTP 205
Query: 89 -MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
+ + D +VV LT T G+ +KD KMK+ + +N +RG +++ + A +SG I
Sbjct: 206 ELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKI 265
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAGV--KDMLDRYFKGEDFP 205
A DV +P+P P +HP + N + PH+ T R + + L +GE P
Sbjct: 266 AAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMP 325
Query: 206 VQ 207
+
Sbjct: 326 SE 327
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 3/172 (1%)
Query: 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
L+ KT+G G G IG+ L +R + F+ ++ Y D + E A F + LD++L
Sbjct: 144 LDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVS 203
Query: 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
+N P T +TR F+K I + +G ++VN ARG ++D + VV A +G +A D
Sbjct: 204 QFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFD 263
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLR--YAAGVKDMLDRYFKGED 203
V+ +P + + +PN + PH+ R A D++D F G D
Sbjct: 264 VFAGEPNINEGYYD-LPNTFLFPHIGSAATQAREDMAHQANDLIDALFGGAD 314
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 10/184 (5%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
I++L+R P +G W + R ++ GKT+G VG G IG + + +
Sbjct: 125 IIMLMRRIFPRSVSAHAGGWEKTAIGSR--EVRGKTLGIVGYGNIGSQVGNLAESLGMTV 182
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
Y+D +L+ K LD +L D+V ++ P ++ T + + ++ KMKKG
Sbjct: 183 RYYD---TSDKLQYGN-VKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGA 238
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH----PWRYMPNQAMTPHV 178
++NNARG+ +D +A+ GH+AG + DV+ +PA P + + N +TPH+
Sbjct: 239 FLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHI 298
Query: 179 SGTT 182
G+T
Sbjct: 299 GGST 302
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 9/155 (5%)
Query: 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDT-- 88
Y L TVG +G GRIG+ + +RLKPF LY R Q E A+F+ + +
Sbjct: 149 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGR-----QPRPEEAAEFQAEFVSTP 203
Query: 89 -MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
+ + D +VV LT T G+ +KD K K+ + +N +RG +++ + A +SG I
Sbjct: 204 ELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLYQALASGKI 263
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
A DV +P+P P +HP + N + PH+ T
Sbjct: 264 AAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSAT 298
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 16/163 (9%)
Query: 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
++ + VG VG G IG++ +Q ++ F ++ +D + +P+LEK+ + + LD + +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK--GYYVDSLDDLYKQ 199
Query: 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
D++ ++ P M + + IAKMK+ V+IVN +RG ++DT AV+ SG I GY+
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 153 DVWNPQPAPKDHPWR-------------YMPNQAMTPHVSGTT 182
DV+ + + W PN +TPH + T
Sbjct: 260 DVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYT 302
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 27 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
VA A + G+T+G +G GR+G+ + R K F N+L++D D +E+ G + L
Sbjct: 162 VASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTL 220
Query: 87 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
+L D V ++ L E + + + +M++G +VN ARG ++D +A+ A G
Sbjct: 221 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 280
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS----GTTIDLRYAAG 190
I G + DV +P + P + PN TPH + +I++R A
Sbjct: 281 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAA 329
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 27 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
VA A + G+T+G +G GR+G+ + R K F N+L++D D +E+ G + L
Sbjct: 162 VASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTL 220
Query: 87 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
+L D V ++ L E + + + +M++G +VN ARG ++D +A+ A G
Sbjct: 221 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 280
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS----GTTIDLRYAAG 190
I G + DV +P + P + PN TPH + +I++R A
Sbjct: 281 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAA 329
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 27 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
VA A + G+T+G +G GR+G+ + R K F N+L++D D +E+ G + L
Sbjct: 159 VASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTL 217
Query: 87 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
+L D V ++ L E + + + +M++G +VN ARG ++D +A+ A G
Sbjct: 218 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 277
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS----GTTIDLRYAAG 190
I G + DV +P + P + PN TPH + +I++R A
Sbjct: 278 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAA 326
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Query: 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
++ + VG VG G IG++ +Q ++ F ++ +D + +P+LEK+ + + LD + +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK--GYYVDSLDDLYKQ 199
Query: 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
D++ ++ P M + + IAKMK+ V+IVN +RG ++DT AV+ SG I GY+
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 153 DVWNPQPAPKDHPWR 167
DV+ + + W
Sbjct: 260 DVYEGEVGIFNEDWE 274
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
L+ TVG +G G IG + RL+ + L YH R +D Q E+ G + + +
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
D +++ PL T + + + +A ++ G L+VN RG+++D AV+ A G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDLR 186
V+ + P D PN TPH+ +R
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVR 301
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
L+ TVG +G G IG + RL+ + L YH R +D Q E+ G + + +
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
D +++ PL T + + + +A ++ G L+VN RG+++D AV+ A G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDLR 186
V+ + P D PN TPH+ +R
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVR 301
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 10/177 (5%)
Query: 20 GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
G WN +A +++ GK +G +G G IG L + + ++D P L T
Sbjct: 137 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-LGNATQ 193
Query: 80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
+ DL M D+V ++ P T+ M I+ MK G L++N +RG ++D A+
Sbjct: 194 VQHLSDLLNM---SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALA 250
Query: 140 DACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVK 192
DA +S H+AG + DV+ +PA P P N +TPH+ G+T + + G++
Sbjct: 251 DALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLE 307
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 10/177 (5%)
Query: 20 GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
G WN +A +++ GK +G +G G IG L + + ++D P L T
Sbjct: 137 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-LGNATQ 193
Query: 80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
+ DL M D+V ++ P T+ M I+ MK G L++N +RG ++D A+
Sbjct: 194 VQHLSDLLNM---SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALA 250
Query: 140 DACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVK 192
DA +S H+AG + DV+ +PA P P N +TPH+ G+T + + G++
Sbjct: 251 DALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLE 307
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 10/177 (5%)
Query: 20 GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
G WN +A +++ GK +G +G G IG L + + ++D P L T
Sbjct: 136 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-LGNATQ 192
Query: 80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
+ DL M D+V ++ P T+ M I+ MK G L++N +RG ++D A+
Sbjct: 193 VQHLSDLLNM---SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALC 249
Query: 140 DACSSGHIAGYSGDVWNPQPAPKDHPWRY----MPNQAMTPHVSGTTIDLRYAAGVK 192
DA +S H+AG + DV+ +PA P+ N +TPH+ G+T + + G++
Sbjct: 250 DALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLE 306
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
L+ TVG +G G IG + RL+ + L YH+ +D Q E+ G + + +
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
D +++ PL T + + + +A ++ G L+VN RG+++D AV+ A G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDLR 186
V+ + P D PN TPH+ +R
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVR 301
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 6/171 (3%)
Query: 27 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
VA A + G+T+G +G GR G+ + R K F +++++D D +E+ G + L
Sbjct: 143 VASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDG-IERSLGVQRVYTL 201
Query: 87 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
+L + D V ++ L E + + I +M++G +VN ARG ++D +A+ A G
Sbjct: 202 QDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGR 261
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS----GTTIDLRYAAGVK 192
I G + DV +P + P + PN TPH + ++++R AA +
Sbjct: 262 IRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATE 312
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
L+ TVG +G G IG + RL+ + L YH+ +D Q E+ G + + +
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
D +++ PL T + + + +A ++ G L+VN RG+++D AV+ A G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDLR 186
V+ + P D PN TPH+ +R
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVR 301
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 6/169 (3%)
Query: 27 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
VA A + G+T+G +G R+G+ + R K F N+L++D D +E+ G + L
Sbjct: 162 VASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTL 220
Query: 87 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
+L D V ++ L E + + + +M++G +VN ARG ++D +A+ A G
Sbjct: 221 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 280
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS----GTTIDLRYAAG 190
I G + DV +P + P + PN TPH + +I++R A
Sbjct: 281 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAA 329
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 12/206 (5%)
Query: 4 LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL 63
L ++R G V G W + +GK +G +G G+IG+ L R + F ++
Sbjct: 139 LAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVR 198
Query: 64 YHDRVKMD--PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
Y +R + + ++ D D++ V + T+ + D + +
Sbjct: 199 YWNRSTLSGVDWIAHQSPVDLARD-------SDVLAVCVAASAATQNIVDASLLQALGPE 251
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
++VN ARG ++D A+++A SG IAG DV+ +PA + + PN + PH
Sbjct: 252 GIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSE-FHTTPNTVLXPHQGSA 310
Query: 182 TIDLRYAAG--VKDMLDRYFKGEDFP 205
T++ R A G V L +F GE P
Sbjct: 311 TVETRXAXGKLVLANLAAHFAGEKAP 336
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 16/163 (9%)
Query: 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
++ + VG VG G IG++ ++ ++ F ++ +D K +P+LEK+ + + LD + +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFK-NPELEKK--GYYVDSLDDLYKQ 199
Query: 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
D++ ++ P M + IA+MK GV+IVN +RG ++DT AV+ SG I G+
Sbjct: 200 ADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVM 259
Query: 153 D-------VWNPQPAPKDHPWRYM------PNQAMTPHVSGTT 182
D V+N K+ P + + PN +TPH + T
Sbjct: 260 DTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYT 302
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
L+ TVG +G G IG RL+ + L YH +D Q E+ G + + +
Sbjct: 144 LDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALDTQTEQRLGLR-QVACSELFASS 202
Query: 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
D +++ PL T + + + +A ++ G L+VN RG+++D AV+ A G + GY+ D
Sbjct: 203 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 262
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDLR 186
V+ + P D PN TPH+ +R
Sbjct: 263 VFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVR 302
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 22 WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK 81
W ++ Y+L TVG +G G IG + + ++ +D V +P+ E
Sbjct: 137 WPSNLISNEIYNL---TVGLIGVGHIGSAVAEIFSAMGAKVIAYD-VAYNPEFEPFLTYT 192
Query: 82 FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA 141
D DT+L + DIV ++TPL T M + ++ +MKK ++N ARG ++DT A++ A
Sbjct: 193 ---DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKA 249
Query: 142 CSSGHIAGYSGDVWNPQPA------------PKDH-PWRYMPNQAMTPH 177
G IAG D + + P+D+ MPN +TPH
Sbjct: 250 LQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPH 298
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV 97
TVG VG GRIG++ Q ++ D ++ + T + LD +L K DI+
Sbjct: 148 TVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCT----QVSLDEVLEKSDIIT 203
Query: 98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157
++ P ++ + +D + KMK G ++VN ARG ++DT+AV++A SG + GY DV +
Sbjct: 204 IHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDG 263
Query: 158 QPA 160
+ +
Sbjct: 264 EAS 266
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 10/177 (5%)
Query: 20 GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
G WN +A +++ GK +G +G G IG L + + ++D ++ +L
Sbjct: 137 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYD---IENKLPLGNA 191
Query: 80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
+ + L +L D+V ++ P T+ I+ K G L++N +RG ++D A+
Sbjct: 192 TQVQH-LSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALC 250
Query: 140 DACSSGHIAGYSGDVWNPQPAPKDHPWRY----MPNQAMTPHVSGTTIDLRYAAGVK 192
DA +S H+AG + DV+ +PA P+ N +TPH+ G+T + + G++
Sbjct: 251 DALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLE 307
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 8/170 (4%)
Query: 27 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
+A +++ GK +G +G G IG L + + ++D ++ +L + + L
Sbjct: 136 LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYD---IENKLPLGNATQVQH-L 191
Query: 87 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
+L D+V ++ P T+ I+ K G L++N +RG ++D A+ DA +S H
Sbjct: 192 SDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKH 251
Query: 147 IAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVK 192
+AG + DV+ +PA P P N +TPH+ G+T + + G++
Sbjct: 252 LAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLE 301
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 27 VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 85
+ A++ G +G VG G I K + ++ + L+Y+D D + EK GA+ +
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 86 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
L+ + + D V V+ P + T + D+ A MK G IVN ARG ++ A++ A SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 184
+ DV +P M + +T H+ G I+
Sbjct: 274 KLLSAGLDVHEFEPQVSKELIE-MKHVTLTTHIGGVAIE 311
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 27 VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 85
+ A++ G +G VG G I K + ++ + L+Y+D D + EK GA+ +
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 86 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
L+ + + D V V+ P + T + D+ A MK G IVN ARG ++ A++ A SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 184
+ DV +P M + +T H+ G I+
Sbjct: 274 KLLSAGLDVHEFEPQVSKELIE-MKHVTLTTHIGGVAIE 311
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 27 VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 85
+ A++ G +G VG G I K + ++ + L+Y+D D + EK GA+ +
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 86 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
L+ + + D V V+ P + T + D+ A MK G IVN ARG ++ A++ A SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 184
+ DV +P M + +T H+ G I+
Sbjct: 274 KLLSAGLDVHEFEPNVSKELIE-MKHVTLTTHIGGVAIE 311
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 11/203 (5%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
IL ++R V G W G GK VG +G GRIG + +R + F+C +
Sbjct: 132 ILAVLRRICECDKYVRRGAWKF-GDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKG 121
Y R K + T + + + DI+VV PLT +T + +++ I + KG
Sbjct: 191 SYFSRSK-----KPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKG 245
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
VLI N RG +D +V A G + G DV+ +P + + + N + PHV
Sbjct: 246 VLI-NIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFG-LENVVLLPHVGSG 303
Query: 182 TIDLR--YAAGVKDMLDRYFKGE 202
T++ R A V L+ +F G+
Sbjct: 304 TVETRKVMADLVVGNLEAHFSGK 326
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 23/216 (10%)
Query: 4 LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL 63
L L+RN Q+ +G++ AG + +L +TVG +G G IG++ ++ K F ++
Sbjct: 114 LYLLRNMGKVQAQLQAGDYEKAGT-FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVI 172
Query: 64 YHDRVKMDPQLEKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
+D M K F+ L+ + + D++ ++ P E+ + ++ MK G
Sbjct: 173 AYDPYPM-----KGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGA 227
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP----------APKDHPWRY---M 169
+++N AR ++DTQA++ SG +AG D + + + KD W M
Sbjct: 228 IVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGM 287
Query: 170 PNQAMTPHV---SGTTIDLRYAAGVKDMLDRYFKGE 202
PN ++PH+ + T + ++ ++D KGE
Sbjct: 288 PNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGE 323
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 90
A +L T+G +G GRIG + F +L +D VK + KE G + LD +L
Sbjct: 136 ARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKREDL--KEKGCVYT-SLDELL 192
Query: 91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
+ D++ ++ P T++T +++RI+ K GV ++N ARG ++DT A+ A G +G
Sbjct: 193 KESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGL 252
Query: 151 SGDVWNPQ 158
DV+ +
Sbjct: 253 GLDVFEDE 260
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Query: 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
L+G+T+G G G+IG+L+ + F N+L R + + + G E D + +
Sbjct: 158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGR-ENSKERARADGFAVAESKDALFEQS 216
Query: 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
D++ V+ L ++TR + + +MK L VN +R +++ +V A + G + D
Sbjct: 217 DVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAID 276
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPH---VSGTTIDLRYAAGVKDMLD 196
V+ +P + H M N TPH V + ++ + +++LD
Sbjct: 277 VFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILD 322
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTML 90
Y E +VG G G +G + + L+ + L R + P +E G E+L L
Sbjct: 135 YTREEFSVGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVG---REELRAFL 191
Query: 91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
+ +++ P T +T G+ + + + ++ G ++N ARG + ++ A SG + G
Sbjct: 192 NQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGA 251
Query: 151 SGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQNY 209
DV++ +P P++ P WR+ P A TPH++ T + + + KGE PV
Sbjct: 252 XLDVFSQEPLPQESPLWRH-PRVAXTPHIAAVTRPAEAIDYISRTITQLEKGE--PVTGQ 308
Query: 210 IVKA 213
+ +A
Sbjct: 309 VDRA 312
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 3/148 (2%)
Query: 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
+ G +G VG G +GK L + L F + D LE E G + L+ +L K
Sbjct: 174 IAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLE-ENGVE-PASLEDVLTKS 231
Query: 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
D + V +T + + + + ++G + +R ++D A+ A SSGHI S D
Sbjct: 232 DFIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-D 290
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
V+ +P P DHP R + + H +G
Sbjct: 291 VYPEEPLPLDHPVRSLKGFIRSAHRAGA 318
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLDT 88
L+G+T+ +G G IG+ + K F +L R A F++ L+
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSR-------SGRERAGFDQVYQLPALNK 190
Query: 89 MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148
ML + D++V P T +T +F R K G ++ N RG ++ ++ A +G +
Sbjct: 191 MLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLG 250
Query: 149 GYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTI 183
DV+ +P P D P PN +TPH S +
Sbjct: 251 MAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSF 285
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Query: 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
+L GKT+G VG GRIG + +L +D + + + EK L+ +L
Sbjct: 139 ELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAV--SLEELLKN 196
Query: 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
D++ ++ +++ + + D + MK V+IVN +R ++ +A++D G + Y+
Sbjct: 197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYAT 256
Query: 153 DVWNPQPAPKDHPWRYMPNQ--AMTPHVSGTT 182
DV+ +P ++ + ++ +T H+ T
Sbjct: 257 DVFWNEPPKEEWELELLKHERVIVTTHIGAQT 288
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
+ L +T+G VG G +G L RL+ L D P+ + F LD ++
Sbjct: 115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCD----PPRAARGDEGDFRT-LDELVQ 169
Query: 92 KCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
+ D++ +TPL + KT + D+ I ++K G +++N RG ++D A++ ++G
Sbjct: 170 EADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQP 229
Query: 148 AGYSGDVWNPQP 159
DVW +P
Sbjct: 230 LSVVLDVWEGEP 241
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
+ +V PLT T +F + + K+ +++N RG +DT A++ A ++ + D
Sbjct: 193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALD 252
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLR 186
V P+P P DHP + +TPH+SG R
Sbjct: 253 VTEPEPLPTDHPLWQRDDVLITPHISGQIAHFR 285
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 30 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM 89
R DL +T G VG G++G L++ L+ +L D P+ +E +F L+ +
Sbjct: 110 RGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCD----PPRQAREPDGEFVS-LERL 164
Query: 90 LPKCDIVVVNTPLTEK----TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
L + D++ ++TPL TR + D+ R+A ++ G +VN +RGA++D QA+ G
Sbjct: 165 LAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGG 224
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 184
+ DVW + P+ P TPH++G +++
Sbjct: 225 ADLEVALDVWEGE--PQADPELAARCLIATPHIAGYSLE 261
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 56 KPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115
K F ++ + R +D ++ E + + D V++ PLT+KTRG + +
Sbjct: 142 KAFGXRVIAYTRSSVDQNVDV-----ISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLL 196
Query: 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT 175
A +K + IVN AR ++ + Y DVW +P + R N ++
Sbjct: 197 ANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITETNLR---NAILS 253
Query: 176 PHV----SGTTIDLRYAAGVKDMLDRYFKGE 202
PHV SG D+ +++ + +F+GE
Sbjct: 254 PHVAGGXSGEIXDIAIQLAFENVRN-FFEGE 283
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 7/148 (4%)
Query: 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
++G+ V +G G IG + + L + R KE +F L+ L +
Sbjct: 122 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP------KEGPWRFTNSLEEALREA 175
Query: 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
V PL + TRG+ +A + + VN R ++D V+ ++ D
Sbjct: 176 RAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASD 235
Query: 154 V-WNPQPAPKDHPWRYMPNQAMTPHVSG 180
V W KD + +PN TP V+G
Sbjct: 236 VWWGRNDFAKDAEFFSLPNVVATPWVAG 263
>pdb|2RJO|A Chain A, Crystal Structure Of Twin-Arginine Translocation Pathway
Signal Protein From Burkholderia Phytofirmans
Length = 332
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 101 PLT---EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157
PLT +G+ D + + G L++N D + +V+ACS Y +WN
Sbjct: 40 PLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEACSKA--GAYVTTIWNK 97
Query: 158 QPAPKD-HPWRYMPN 171
PKD HPW Y PN
Sbjct: 98 ---PKDLHPWDYNPN 109
>pdb|2PSO|A Chain A, Human Stard13 (Dlc2) Lipid Transfer And Protein
Localization Domain
pdb|2PSO|B Chain B, Human Stard13 (Dlc2) Lipid Transfer And Protein
Localization Domain
pdb|2PSO|C Chain C, Human Stard13 (Dlc2) Lipid Transfer And Protein
Localization Domain
Length = 237
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
P D VV+ T T+ +GM ++ + ++ R +MD+Q +++ C SG
Sbjct: 132 PSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSG 186
>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain In Complex With Partially Bound Dmso
Length = 201
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 17/71 (23%)
Query: 65 HDRVKMDPQLEKETGAKFEED---------------LDTMLPKCDIVVVNTPLTEKTRGM 109
++ +KM+PQ + G ++ D LDT++PK ++ V P+ ++TR
Sbjct: 127 YNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTR-- 184
Query: 110 FDKDRIAKMKK 120
K IA+ +K
Sbjct: 185 LSKGDIAQARK 195
>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain
Length = 202
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 17/71 (23%)
Query: 65 HDRVKMDPQLEKETGAKFEED---------------LDTMLPKCDIVVVNTPLTEKTRGM 109
++ +KM+PQ + G ++ D LDT++PK ++ V P+ ++TR
Sbjct: 128 YNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTR-- 185
Query: 110 FDKDRIAKMKK 120
K IA+ +K
Sbjct: 186 LSKGDIAQARK 196
>pdb|3VDG|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Formate And Acetate
pdb|3VFC|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Tartrate
Length = 445
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 163 DHPWRYMPNQAMTPHVSGTTIDLRYAAGVKDMLD 196
DHP R PN A TP S ++ AAG++ +L+
Sbjct: 238 DHPLRLDPNAAWTPQTS-----VKVAAGLEGVLE 266
>pdb|3O66|A Chain A, Crystal Structure Of Glycine BetaineCARNITINECHOLINE ABC
TRANSPORTER
pdb|3O66|B Chain B, Crystal Structure Of Glycine BetaineCARNITINECHOLINE ABC
TRANSPORTER
Length = 282
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 14 HHQVISGEWNVAGVAYRAYDLEG 36
H+ +I+G+ N++GV Y DL G
Sbjct: 55 HNALINGDANISGVRYNGTDLTG 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,123,282
Number of Sequences: 62578
Number of extensions: 296361
Number of successful extensions: 737
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 68
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)