Query 027577
Match_columns 221
No_of_seqs 347 out of 2016
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:59:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03139 formate dehydrogenase 100.0 6.7E-57 1.4E-61 399.0 23.8 221 1-221 164-386 (386)
2 COG0111 SerA Phosphoglycerate 100.0 7.5E-57 1.6E-61 391.3 22.0 201 1-204 109-311 (324)
3 PRK07574 formate dehydrogenase 100.0 3.4E-55 7.4E-60 388.2 23.3 221 1-221 157-383 (385)
4 PRK15409 bifunctional glyoxyla 100.0 1.7E-53 3.6E-58 371.1 23.1 207 1-211 109-319 (323)
5 PRK06487 glycerate dehydrogena 100.0 9.1E-53 2E-57 366.0 22.5 200 1-207 109-316 (317)
6 COG1052 LdhA Lactate dehydroge 100.0 1.5E-52 3.2E-57 364.2 21.9 202 1-204 109-317 (324)
7 PRK08410 2-hydroxyacid dehydro 100.0 2.6E-52 5.7E-57 362.3 22.3 197 1-203 106-311 (311)
8 PRK15469 ghrA bifunctional gly 100.0 9.7E-52 2.1E-56 358.5 21.6 208 1-216 105-312 (312)
9 PRK06932 glycerate dehydrogena 100.0 3E-51 6.5E-56 356.0 21.0 197 1-203 108-314 (314)
10 PRK11790 D-3-phosphoglycerate 100.0 5.6E-51 1.2E-55 365.4 22.5 215 1-221 118-340 (409)
11 PRK13243 glyoxylate reductase; 100.0 1.1E-50 2.4E-55 355.1 22.6 206 1-211 110-322 (333)
12 PLN02928 oxidoreductase family 100.0 1E-50 2.2E-55 356.9 22.3 201 1-206 128-342 (347)
13 PLN02306 hydroxypyruvate reduc 100.0 3.6E-50 7.9E-55 356.8 22.6 207 1-208 129-354 (386)
14 PF02826 2-Hacid_dh_C: D-isome 100.0 1.5E-51 3.2E-56 331.5 12.3 177 1-179 2-178 (178)
15 TIGR01327 PGDH D-3-phosphoglyc 100.0 6.7E-50 1.5E-54 368.6 22.7 211 1-215 105-318 (525)
16 PRK13581 D-3-phosphoglycerate 100.0 2.8E-49 6.2E-54 364.6 21.6 210 1-215 107-319 (526)
17 KOG0068 D-3-phosphoglycerate d 100.0 2.5E-49 5.5E-54 336.0 14.3 209 1-213 113-325 (406)
18 PRK06436 glycerate dehydrogena 100.0 1.7E-47 3.8E-52 330.4 22.2 197 1-213 91-291 (303)
19 KOG0069 Glyoxylate/hydroxypyru 100.0 1.5E-47 3.2E-52 330.5 19.4 205 1-207 127-334 (336)
20 PRK12480 D-lactate dehydrogena 100.0 2.1E-47 4.6E-52 333.8 19.9 199 1-204 112-325 (330)
21 PRK08605 D-lactate dehydrogena 100.0 1.7E-45 3.6E-50 322.4 21.3 200 1-204 112-327 (332)
22 PRK15438 erythronate-4-phospha 100.0 3.9E-42 8.5E-47 303.8 18.7 165 32-204 112-282 (378)
23 PRK00257 erythronate-4-phospha 100.0 7.7E-42 1.7E-46 302.7 19.2 166 31-203 111-282 (381)
24 KOG0067 Transcription factor C 99.9 4E-23 8.6E-28 178.0 8.5 204 2-213 139-351 (435)
25 PTZ00075 Adenosylhomocysteinas 99.8 3.1E-18 6.7E-23 154.7 13.2 121 31-163 249-369 (476)
26 PLN02494 adenosylhomocysteinas 99.7 4.1E-17 9E-22 147.2 10.9 121 32-158 250-373 (477)
27 TIGR00936 ahcY adenosylhomocys 99.7 4.3E-16 9.2E-21 139.3 12.0 121 32-157 191-312 (406)
28 PF03446 NAD_binding_2: NAD bi 99.7 1.1E-16 2.4E-21 126.9 7.0 115 37-153 2-117 (163)
29 COG2084 MmsB 3-hydroxyisobutyr 99.7 4.5E-16 9.7E-21 133.0 10.4 115 37-153 1-118 (286)
30 PRK13403 ketol-acid reductoiso 99.6 5.9E-16 1.3E-20 133.7 9.9 93 32-126 12-104 (335)
31 PRK12490 6-phosphogluconate de 99.6 3.3E-14 7.2E-19 123.1 11.8 114 37-153 1-117 (299)
32 PRK15461 NADH-dependent gamma- 99.6 2.6E-14 5.7E-19 123.5 10.6 116 37-154 2-119 (296)
33 PRK11559 garR tartronate semia 99.5 3E-14 6.6E-19 122.8 10.8 122 37-158 3-126 (296)
34 TIGR01505 tartro_sem_red 2-hyd 99.5 2.2E-14 4.9E-19 123.5 9.4 114 38-153 1-116 (291)
35 PRK09599 6-phosphogluconate de 99.5 1.1E-13 2.3E-18 119.9 11.7 115 37-154 1-118 (301)
36 PF00670 AdoHcyase_NAD: S-aden 99.5 2.2E-13 4.9E-18 107.0 9.3 104 32-140 19-123 (162)
37 PLN02350 phosphogluconate dehy 99.5 3.2E-13 7E-18 123.7 10.2 122 37-159 7-138 (493)
38 TIGR02853 spore_dpaA dipicolin 99.4 3.5E-13 7.5E-18 116.1 9.4 96 31-131 146-243 (287)
39 PRK05476 S-adenosyl-L-homocyst 99.4 4.6E-13 1E-17 120.5 10.5 127 8-140 185-312 (425)
40 PRK15059 tartronate semialdehy 99.4 7.3E-13 1.6E-17 114.4 10.8 115 37-154 1-117 (292)
41 KOG0409 Predicted dehydrogenas 99.4 5.2E-13 1.1E-17 113.3 8.3 119 33-153 32-153 (327)
42 TIGR00872 gnd_rel 6-phosphoglu 99.4 1.9E-12 4.1E-17 112.1 11.9 114 37-154 1-117 (298)
43 PLN02858 fructose-bisphosphate 99.4 2E-12 4.4E-17 130.7 11.5 118 35-154 3-124 (1378)
44 PRK05479 ketol-acid reductoiso 99.4 1.8E-12 4E-17 113.1 9.6 96 32-130 13-109 (330)
45 PTZ00142 6-phosphogluconate de 99.4 2.3E-12 5E-17 117.7 10.5 121 37-158 2-131 (470)
46 PLN02712 arogenate dehydrogena 99.4 2.9E-12 6.2E-17 121.7 11.0 115 28-144 361-476 (667)
47 PLN02256 arogenate dehydrogena 99.4 1.1E-11 2.4E-16 107.6 13.4 109 34-144 34-143 (304)
48 cd00401 AdoHcyase S-adenosyl-L 99.4 7.7E-12 1.7E-16 112.3 12.2 105 31-140 197-302 (413)
49 TIGR01692 HIBADH 3-hydroxyisob 99.4 3.3E-12 7.2E-17 110.0 9.4 111 41-153 1-113 (288)
50 PLN02858 fructose-bisphosphate 99.3 7.9E-12 1.7E-16 126.5 11.2 117 36-154 324-444 (1378)
51 TIGR00873 gnd 6-phosphoglucona 99.3 9E-12 1.9E-16 113.9 10.4 119 38-157 1-127 (467)
52 PRK08306 dipicolinate synthase 99.3 1.7E-11 3.6E-16 106.1 10.2 94 32-130 148-243 (296)
53 PF07991 IlvN: Acetohydroxy ac 99.3 9.5E-12 2.1E-16 97.5 7.4 91 34-126 2-93 (165)
54 PRK07502 cyclohexadienyl dehyd 99.3 5.5E-11 1.2E-15 103.2 12.6 141 35-180 5-155 (307)
55 PF03807 F420_oxidored: NADP o 99.2 1.3E-11 2.8E-16 88.8 5.8 90 38-130 1-96 (96)
56 PRK05225 ketol-acid reductoiso 99.2 1.6E-11 3.5E-16 110.2 7.3 102 21-125 21-128 (487)
57 PLN02712 arogenate dehydrogena 99.2 1.7E-10 3.7E-15 109.7 14.6 109 34-144 50-159 (667)
58 TIGR00465 ilvC ketol-acid redu 99.2 4.8E-11 1E-15 104.0 10.0 97 34-133 1-98 (314)
59 PRK08655 prephenate dehydrogen 99.2 2.1E-10 4.5E-15 104.4 14.4 134 37-178 1-137 (437)
60 PRK07417 arogenate dehydrogena 99.2 1.6E-10 3.5E-15 99.0 12.9 138 37-180 1-143 (279)
61 PLN02688 pyrroline-5-carboxyla 99.2 1.4E-10 3.1E-15 98.4 10.8 103 37-143 1-108 (266)
62 PRK12491 pyrroline-5-carboxyla 99.2 1.2E-10 2.5E-15 99.7 9.8 104 36-143 2-110 (272)
63 PRK08507 prephenate dehydrogen 99.2 5.1E-10 1.1E-14 95.7 12.9 100 37-144 1-103 (275)
64 COG1023 Gnd Predicted 6-phosph 99.2 2.4E-10 5.3E-15 94.4 9.7 118 37-157 1-121 (300)
65 PRK09260 3-hydroxybutyryl-CoA 99.1 1.5E-09 3.2E-14 93.5 14.5 115 37-155 2-141 (288)
66 PRK06545 prephenate dehydrogen 99.1 6.1E-10 1.3E-14 98.9 12.3 136 37-180 1-150 (359)
67 PRK08293 3-hydroxybutyryl-CoA 99.1 2.7E-09 5.9E-14 91.8 15.2 133 37-180 4-161 (287)
68 PRK14619 NAD(P)H-dependent gly 99.1 3.9E-10 8.5E-15 98.0 9.7 82 35-131 3-85 (308)
69 PLN02545 3-hydroxybutyryl-CoA 99.1 1.3E-09 2.8E-14 94.1 12.8 104 37-144 5-133 (295)
70 COG0287 TyrA Prephenate dehydr 99.1 1.1E-09 2.5E-14 93.8 11.8 138 36-181 3-148 (279)
71 PRK15182 Vi polysaccharide bio 99.1 1.9E-09 4.1E-14 97.7 13.6 137 36-174 6-173 (425)
72 PRK07679 pyrroline-5-carboxyla 99.1 8.4E-10 1.8E-14 94.6 10.1 105 35-143 2-112 (279)
73 cd01075 NAD_bind_Leu_Phe_Val_D 99.1 2.1E-09 4.5E-14 88.0 11.8 109 32-148 24-134 (200)
74 COG0499 SAM1 S-adenosylhomocys 99.1 6.4E-10 1.4E-14 96.6 9.1 111 33-148 206-318 (420)
75 PRK07066 3-hydroxybutyryl-CoA 99.1 2.2E-09 4.7E-14 93.9 12.4 116 37-155 8-143 (321)
76 PRK14618 NAD(P)H-dependent gly 99.1 1.5E-09 3.1E-14 95.1 11.1 103 36-144 4-123 (328)
77 PRK11064 wecC UDP-N-acetyl-D-m 99.0 2.4E-09 5.1E-14 96.8 11.8 109 37-145 4-136 (415)
78 PRK06129 3-hydroxyacyl-CoA deh 99.0 8.9E-09 1.9E-13 89.5 14.7 134 37-181 3-160 (308)
79 PRK07530 3-hydroxybutyryl-CoA 99.0 6.7E-09 1.4E-13 89.5 13.7 115 37-156 5-144 (292)
80 PRK08818 prephenate dehydrogen 99.0 7.8E-09 1.7E-13 91.9 14.4 121 35-177 3-130 (370)
81 PRK14806 bifunctional cyclohex 99.0 3.3E-09 7.1E-14 102.2 13.0 137 37-180 4-153 (735)
82 TIGR01724 hmd_rel H2-forming N 99.0 3.2E-09 6.9E-14 91.7 11.3 93 48-144 32-129 (341)
83 cd01065 NAD_bind_Shikimate_DH 99.0 4.1E-09 8.9E-14 82.0 10.8 111 33-148 16-134 (155)
84 TIGR03026 NDP-sugDHase nucleot 99.0 2.5E-09 5.5E-14 96.5 10.4 106 37-142 1-134 (411)
85 PRK13302 putative L-aspartate 99.0 2.5E-09 5.4E-14 91.5 9.4 109 35-148 5-118 (271)
86 PRK00094 gpsA NAD(P)H-dependen 99.0 2.1E-09 4.6E-14 93.5 9.1 95 37-133 2-110 (325)
87 PRK07531 bifunctional 3-hydrox 99.0 4.6E-09 9.9E-14 97.0 11.6 116 37-156 5-140 (495)
88 PRK11199 tyrA bifunctional cho 99.0 7.2E-09 1.6E-13 92.5 12.5 91 35-141 97-188 (374)
89 PF01210 NAD_Gly3P_dh_N: NAD-d 99.0 1.7E-09 3.6E-14 85.2 7.4 92 38-131 1-106 (157)
90 PRK07680 late competence prote 99.0 3.6E-09 7.8E-14 90.4 9.9 103 37-143 1-109 (273)
91 PRK06130 3-hydroxybutyryl-CoA 98.9 2.5E-08 5.4E-13 86.6 14.4 106 37-144 5-129 (311)
92 PRK05808 3-hydroxybutyryl-CoA 98.9 3.3E-08 7.2E-13 84.8 14.3 105 37-144 4-132 (282)
93 PRK07819 3-hydroxybutyryl-CoA 98.9 1.3E-08 2.7E-13 87.8 11.7 116 37-156 6-146 (286)
94 PRK06035 3-hydroxyacyl-CoA deh 98.9 1.5E-08 3.2E-13 87.4 11.9 115 37-155 4-145 (291)
95 TIGR00518 alaDH alanine dehydr 98.9 3.4E-09 7.3E-14 94.5 8.1 96 33-128 164-267 (370)
96 PRK14194 bifunctional 5,10-met 98.9 4.7E-09 1E-13 90.5 8.7 80 31-131 154-234 (301)
97 PRK06476 pyrroline-5-carboxyla 98.9 6.2E-09 1.3E-13 88.2 9.4 103 37-145 1-108 (258)
98 KOG2380 Prephenate dehydrogena 98.9 1.9E-08 4.1E-13 87.1 11.5 139 36-179 52-192 (480)
99 PF10727 Rossmann-like: Rossma 98.9 1.6E-09 3.5E-14 82.3 4.5 93 34-128 8-104 (127)
100 PRK09287 6-phosphogluconate de 98.9 6.8E-09 1.5E-13 94.8 9.1 111 47-158 1-119 (459)
101 PRK08268 3-hydroxy-acyl-CoA de 98.9 1.2E-08 2.7E-13 94.3 10.7 116 37-157 8-148 (507)
102 COG0345 ProC Pyrroline-5-carbo 98.9 1.3E-08 2.9E-13 86.4 10.0 99 37-143 2-108 (266)
103 COG0059 IlvC Ketol-acid reduct 98.9 8.7E-09 1.9E-13 87.9 8.5 90 33-124 15-105 (338)
104 PRK06928 pyrroline-5-carboxyla 98.9 2.6E-08 5.6E-13 85.4 11.1 103 37-143 2-111 (277)
105 PRK11880 pyrroline-5-carboxyla 98.9 1.1E-08 2.4E-13 86.9 8.7 101 37-143 3-107 (267)
106 KOG1370 S-adenosylhomocysteine 98.8 9.8E-09 2.1E-13 87.7 7.9 94 34-132 212-305 (434)
107 PF01488 Shikimate_DH: Shikima 98.8 3.6E-09 7.8E-14 81.3 4.7 95 33-130 9-111 (135)
108 PRK15057 UDP-glucose 6-dehydro 98.8 3.2E-08 7E-13 88.7 11.3 109 37-147 1-136 (388)
109 PRK07634 pyrroline-5-carboxyla 98.8 3E-08 6.6E-13 83.0 10.2 106 35-145 3-114 (245)
110 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.8 3.3E-08 7.1E-13 91.4 11.2 119 36-159 5-148 (503)
111 cd01080 NAD_bind_m-THF_DH_Cycl 98.8 3.9E-08 8.5E-13 78.3 8.7 82 32-134 40-122 (168)
112 PRK14188 bifunctional 5,10-met 98.8 3.9E-08 8.5E-13 84.8 8.9 79 31-131 153-233 (296)
113 PRK13304 L-aspartate dehydroge 98.7 5.6E-08 1.2E-12 82.9 9.3 107 37-148 2-115 (265)
114 PRK12557 H(2)-dependent methyl 98.7 8.2E-08 1.8E-12 84.7 10.1 95 48-143 32-132 (342)
115 TIGR01915 npdG NADPH-dependent 98.7 1.3E-07 2.9E-12 78.2 9.4 94 37-133 1-106 (219)
116 PRK14189 bifunctional 5,10-met 98.7 8.9E-08 1.9E-12 82.1 8.3 81 31-132 153-234 (285)
117 PRK06522 2-dehydropantoate 2-r 98.7 3.2E-07 6.9E-12 79.0 11.6 108 37-148 1-119 (304)
118 PRK08229 2-dehydropantoate 2-r 98.7 1.8E-07 3.9E-12 82.1 10.2 107 37-148 3-126 (341)
119 PRK14179 bifunctional 5,10-met 98.6 1.2E-07 2.7E-12 81.2 8.5 80 31-131 153-233 (284)
120 cd05311 NAD_bind_2_malic_enz N 98.6 1.2E-06 2.6E-11 73.1 13.8 153 32-201 21-197 (226)
121 PRK12921 2-dehydropantoate 2-r 98.6 4.2E-07 9.1E-12 78.4 11.0 108 37-148 1-121 (305)
122 PTZ00431 pyrroline carboxylate 98.6 2.7E-07 5.8E-12 78.4 9.0 98 35-143 2-103 (260)
123 PF02737 3HCDH_N: 3-hydroxyacy 98.6 1.8E-07 3.9E-12 75.3 7.4 114 38-155 1-138 (180)
124 COG0240 GpsA Glycerol-3-phosph 98.6 2.2E-07 4.8E-12 80.8 8.3 96 37-134 2-111 (329)
125 COG2085 Predicted dinucleotide 98.6 3.3E-07 7.3E-12 74.9 8.8 90 37-130 2-95 (211)
126 PF03721 UDPG_MGDP_dh_N: UDP-g 98.6 8.9E-08 1.9E-12 77.5 5.5 107 37-144 1-137 (185)
127 cd05191 NAD_bind_amino_acid_DH 98.6 5.7E-07 1.2E-11 63.6 8.8 66 33-128 20-86 (86)
128 PRK06141 ornithine cyclodeamin 98.6 4.1E-07 8.9E-12 79.4 9.4 90 34-129 123-220 (314)
129 PLN00203 glutamyl-tRNA reducta 98.6 1.5E-07 3.2E-12 87.2 7.0 93 33-128 263-369 (519)
130 cd05213 NAD_bind_Glutamyl_tRNA 98.5 3.6E-07 7.8E-12 79.7 8.9 94 34-129 176-274 (311)
131 TIGR00561 pntA NAD(P) transhyd 98.5 3.8E-07 8.3E-12 84.0 9.3 96 33-129 161-285 (511)
132 PRK14175 bifunctional 5,10-met 98.5 3.6E-07 7.8E-12 78.5 8.5 80 31-131 153-233 (286)
133 TIGR01035 hemA glutamyl-tRNA r 98.5 2.3E-07 4.9E-12 84.1 7.6 94 33-129 177-278 (417)
134 PTZ00345 glycerol-3-phosphate 98.5 4.9E-07 1.1E-11 80.4 8.6 99 34-134 9-135 (365)
135 TIGR03376 glycerol3P_DH glycer 98.5 4.8E-07 1E-11 79.9 8.3 93 38-132 1-120 (342)
136 PLN02353 probable UDP-glucose 98.5 3.6E-06 7.8E-11 77.4 14.1 136 37-174 2-176 (473)
137 PRK00045 hemA glutamyl-tRNA re 98.5 3.9E-07 8.4E-12 82.7 7.6 93 33-128 179-280 (423)
138 TIGR02371 ala_DH_arch alanine 98.4 8.6E-07 1.9E-11 77.8 8.5 91 35-131 127-225 (325)
139 PF01262 AlaDh_PNT_C: Alanine 98.4 3.4E-07 7.5E-12 72.8 5.2 97 32-128 16-139 (168)
140 COG0677 WecC UDP-N-acetyl-D-ma 98.4 3.6E-06 7.8E-11 74.6 11.9 140 37-184 10-186 (436)
141 PRK14620 NAD(P)H-dependent gly 98.4 1.3E-06 2.8E-11 76.4 9.0 93 37-131 1-109 (326)
142 PF02153 PDH: Prephenate dehyd 98.4 1.3E-06 2.8E-11 74.2 8.4 126 51-180 1-134 (258)
143 PRK12439 NAD(P)H-dependent gly 98.4 1.1E-06 2.4E-11 77.5 8.3 92 37-131 8-114 (341)
144 PRK05472 redox-sensing transcr 98.4 2.6E-07 5.5E-12 76.3 3.6 110 35-144 83-201 (213)
145 PRK09424 pntA NAD(P) transhydr 98.4 1.3E-06 2.9E-11 80.6 8.6 97 33-129 162-286 (509)
146 COG0362 Gnd 6-phosphogluconate 98.4 3.8E-06 8.2E-11 74.3 10.9 123 36-159 3-133 (473)
147 PRK00258 aroE shikimate 5-dehy 98.4 1.8E-06 3.9E-11 74.1 8.7 72 32-103 119-196 (278)
148 TIGR00507 aroE shikimate 5-deh 98.4 3.4E-06 7.4E-11 72.0 10.3 111 33-148 114-232 (270)
149 cd05212 NAD_bind_m-THF_DH_Cycl 98.3 6.6E-06 1.4E-10 63.6 10.4 80 31-131 23-103 (140)
150 cd01079 NAD_bind_m-THF_DH NAD 98.3 4E-06 8.7E-11 67.9 9.4 91 31-129 57-157 (197)
151 PF02882 THF_DHG_CYH_C: Tetrah 98.3 2.4E-06 5.3E-11 67.5 7.9 81 31-132 31-112 (160)
152 PRK10792 bifunctional 5,10-met 98.3 4.7E-06 1E-10 71.5 9.7 79 31-130 154-233 (285)
153 PRK14192 bifunctional 5,10-met 98.3 4.9E-06 1.1E-10 71.7 9.4 80 31-131 154-234 (283)
154 PRK14191 bifunctional 5,10-met 98.3 3.4E-06 7.4E-11 72.4 8.0 80 31-131 152-232 (285)
155 PRK07340 ornithine cyclodeamin 98.3 2.8E-06 6E-11 73.9 7.6 92 34-132 123-221 (304)
156 COG1712 Predicted dinucleotide 98.3 2.9E-06 6.2E-11 69.9 7.1 96 37-137 1-100 (255)
157 PRK13940 glutamyl-tRNA reducta 98.3 2.7E-06 5.8E-11 77.0 7.5 91 33-128 178-273 (414)
158 COG0373 HemA Glutamyl-tRNA red 98.2 3.1E-06 6.6E-11 76.1 7.1 93 33-128 175-274 (414)
159 PRK14176 bifunctional 5,10-met 98.2 5.7E-06 1.2E-10 71.1 8.4 79 31-130 159-238 (287)
160 PRK13303 L-aspartate dehydroge 98.2 1.4E-05 3.1E-10 68.1 10.9 107 37-148 2-115 (265)
161 cd01078 NAD_bind_H4MPT_DH NADP 98.2 4.3E-06 9.4E-11 67.7 7.2 98 32-133 24-134 (194)
162 PRK14178 bifunctional 5,10-met 98.2 4.4E-06 9.6E-11 71.5 7.5 80 31-131 147-227 (279)
163 PRK08618 ornithine cyclodeamin 98.2 6.1E-06 1.3E-10 72.4 8.4 89 35-130 126-223 (325)
164 PRK12549 shikimate 5-dehydroge 98.2 7.9E-06 1.7E-10 70.4 8.9 70 33-102 124-202 (284)
165 TIGR01546 GAPDH-II_archae glyc 98.2 7.8E-06 1.7E-10 71.7 8.6 88 39-129 1-109 (333)
166 PRK06249 2-dehydropantoate 2-r 98.2 2.4E-05 5.1E-10 68.2 11.4 111 36-152 5-129 (313)
167 PF01408 GFO_IDH_MocA: Oxidore 98.2 5E-06 1.1E-10 61.7 6.1 105 38-147 2-114 (120)
168 TIGR02992 ectoine_eutC ectoine 98.2 1E-05 2.2E-10 71.0 9.0 89 35-129 128-225 (326)
169 PRK06046 alanine dehydrogenase 98.2 8E-06 1.7E-10 71.7 8.2 88 36-130 129-225 (326)
170 COG0686 Ald Alanine dehydrogen 98.2 4.2E-06 9.2E-11 72.0 6.2 95 33-128 165-268 (371)
171 cd05211 NAD_bind_Glu_Leu_Phe_V 98.2 3.1E-05 6.6E-10 64.2 11.2 108 33-148 20-145 (217)
172 PRK13301 putative L-aspartate 98.1 1.7E-05 3.6E-10 67.3 9.5 103 36-144 2-112 (267)
173 PRK11730 fadB multifunctional 98.1 2.9E-05 6.3E-10 74.9 12.4 115 37-155 314-452 (715)
174 cd01076 NAD_bind_1_Glu_DH NAD( 98.1 2.6E-05 5.6E-10 65.1 10.6 108 32-148 27-154 (227)
175 PRK14183 bifunctional 5,10-met 98.1 1.3E-05 2.8E-10 68.6 8.3 80 31-131 152-232 (281)
176 PRK08291 ectoine utilization p 98.1 1.1E-05 2.5E-10 70.8 8.1 88 35-128 131-227 (330)
177 PF13241 NAD_binding_7: Putati 98.1 9E-06 2E-10 59.4 6.2 88 33-128 4-91 (103)
178 PRK14190 bifunctional 5,10-met 98.1 2.1E-05 4.6E-10 67.5 9.3 80 31-131 153-233 (284)
179 PRK06823 ornithine cyclodeamin 98.1 1.8E-05 3.9E-10 69.2 8.7 91 35-131 127-225 (315)
180 PF02558 ApbA: Ketopantoate re 98.1 9.9E-06 2.1E-10 62.7 6.4 110 39-152 1-124 (151)
181 COG1748 LYS9 Saccharopine dehy 98.1 1.6E-05 3.4E-10 71.1 8.4 104 37-147 2-117 (389)
182 TIGR01921 DAP-DH diaminopimela 98.1 1.8E-05 3.9E-10 69.2 8.4 107 36-148 3-115 (324)
183 TIGR02440 FadJ fatty oxidation 98.1 4.5E-05 9.8E-10 73.4 12.0 115 37-155 305-444 (699)
184 PRK14170 bifunctional 5,10-met 98.1 3.3E-05 7.2E-10 66.3 9.9 80 31-131 152-232 (284)
185 PRK09310 aroDE bifunctional 3- 98.1 2.8E-05 6.1E-10 71.7 10.2 72 31-103 327-401 (477)
186 COG1064 AdhP Zn-dependent alco 98.1 1.7E-05 3.6E-10 69.6 8.1 88 35-128 166-259 (339)
187 TIGR02441 fa_ox_alpha_mit fatt 98.0 3.4E-05 7.4E-10 74.6 10.6 116 37-156 336-475 (737)
188 PRK14177 bifunctional 5,10-met 98.0 2.6E-05 5.6E-10 66.9 8.6 79 31-130 154-233 (284)
189 PRK14173 bifunctional 5,10-met 98.0 2.7E-05 5.8E-10 67.0 8.7 81 31-132 150-231 (287)
190 PRK00048 dihydrodipicolinate r 98.0 3.5E-05 7.6E-10 65.4 9.2 89 37-130 2-93 (257)
191 PRK00676 hemA glutamyl-tRNA re 98.0 2.8E-05 6.1E-10 68.4 8.8 90 33-128 171-261 (338)
192 PF02423 OCD_Mu_crystall: Orni 98.0 1.4E-05 2.9E-10 69.9 6.8 93 36-132 128-228 (313)
193 PRK14186 bifunctional 5,10-met 98.0 2.9E-05 6.2E-10 67.1 8.6 81 31-132 153-234 (297)
194 COG1250 FadB 3-hydroxyacyl-CoA 98.0 5.9E-05 1.3E-09 65.5 10.6 117 36-156 3-143 (307)
195 PRK14169 bifunctional 5,10-met 98.0 3E-05 6.4E-10 66.6 8.5 80 31-131 151-231 (282)
196 PRK06199 ornithine cyclodeamin 98.0 2.6E-05 5.7E-10 69.8 8.6 93 36-131 155-262 (379)
197 PRK14172 bifunctional 5,10-met 98.0 3.2E-05 6.9E-10 66.2 8.5 80 31-131 153-233 (278)
198 PRK14166 bifunctional 5,10-met 98.0 3.3E-05 7.1E-10 66.3 8.5 79 31-130 152-231 (282)
199 PRK06407 ornithine cyclodeamin 98.0 3.6E-05 7.7E-10 66.9 8.8 91 35-131 116-215 (301)
200 PRK14982 acyl-ACP reductase; P 98.0 2.8E-05 6E-10 68.6 8.1 98 32-135 151-253 (340)
201 PRK14180 bifunctional 5,10-met 98.0 3.6E-05 7.7E-10 66.1 8.5 79 31-130 153-232 (282)
202 COG2423 Predicted ornithine cy 98.0 4.8E-05 1E-09 66.8 9.1 88 36-129 130-226 (330)
203 PLN02516 methylenetetrahydrofo 98.0 4.2E-05 9.1E-10 66.1 8.6 80 31-131 162-242 (299)
204 PRK14187 bifunctional 5,10-met 97.9 4.5E-05 9.7E-10 65.8 8.6 80 31-131 155-235 (294)
205 PTZ00117 malate dehydrogenase; 97.9 7.6E-05 1.7E-09 65.3 10.2 95 34-129 3-123 (319)
206 PRK07589 ornithine cyclodeamin 97.9 3.7E-05 8E-10 68.0 8.2 90 36-129 129-226 (346)
207 TIGR02354 thiF_fam2 thiamine b 97.9 4E-05 8.8E-10 62.7 7.8 94 32-126 17-143 (200)
208 PRK14031 glutamate dehydrogena 97.9 0.00011 2.4E-09 66.8 11.2 111 31-148 223-361 (444)
209 PRK14171 bifunctional 5,10-met 97.9 4.6E-05 9.9E-10 65.6 8.3 79 31-130 154-233 (288)
210 PRK14182 bifunctional 5,10-met 97.9 5.1E-05 1.1E-09 65.1 8.6 80 31-131 152-232 (282)
211 PLN02616 tetrahydrofolate dehy 97.9 4.4E-05 9.5E-10 67.3 8.3 80 31-131 226-306 (364)
212 TIGR01763 MalateDH_bact malate 97.9 5.3E-05 1.1E-09 65.9 8.8 116 37-153 2-147 (305)
213 PRK14193 bifunctional 5,10-met 97.9 5.5E-05 1.2E-09 65.0 8.6 80 31-131 153-235 (284)
214 smart00859 Semialdhyde_dh Semi 97.9 5.1E-05 1.1E-09 56.8 7.4 90 38-129 1-100 (122)
215 cd05313 NAD_bind_2_Glu_DH NAD( 97.9 0.0003 6.5E-09 59.6 12.8 115 32-155 34-178 (254)
216 PLN02897 tetrahydrofolate dehy 97.9 4.9E-05 1.1E-09 66.7 8.2 80 31-131 209-289 (345)
217 TIGR02437 FadB fatty oxidation 97.9 5.3E-05 1.2E-09 73.1 9.1 115 37-155 314-452 (714)
218 PRK14181 bifunctional 5,10-met 97.9 6.5E-05 1.4E-09 64.6 8.6 80 31-131 148-232 (287)
219 PRK11154 fadJ multifunctional 97.9 5.8E-05 1.3E-09 72.8 8.8 115 37-155 310-449 (708)
220 PF13380 CoA_binding_2: CoA bi 97.9 0.00023 4.9E-09 53.2 10.2 100 37-148 1-104 (116)
221 COG1004 Ugd Predicted UDP-gluc 97.8 0.00016 3.4E-09 64.4 10.3 110 37-146 1-138 (414)
222 COG0190 FolD 5,10-methylene-te 97.8 6.3E-05 1.4E-09 64.2 7.4 110 31-182 151-261 (283)
223 PRK14184 bifunctional 5,10-met 97.8 8.1E-05 1.8E-09 64.0 8.1 78 31-129 152-234 (286)
224 PRK14168 bifunctional 5,10-met 97.8 9.6E-05 2.1E-09 63.9 8.3 80 31-131 156-240 (297)
225 PRK14185 bifunctional 5,10-met 97.8 0.00011 2.4E-09 63.4 8.5 80 31-131 152-236 (293)
226 PRK06718 precorrin-2 dehydroge 97.8 0.00014 3.1E-09 59.6 8.7 72 32-103 6-81 (202)
227 PRK14174 bifunctional 5,10-met 97.8 9.8E-05 2.1E-09 63.8 8.1 80 31-131 154-238 (295)
228 PRK05708 2-dehydropantoate 2-r 97.8 0.00019 4.2E-09 62.3 9.8 114 36-152 2-127 (305)
229 PF01118 Semialdhyde_dh: Semia 97.8 0.00011 2.5E-09 55.0 7.3 87 38-129 1-98 (121)
230 PRK12548 shikimate 5-dehydroge 97.8 0.00016 3.6E-09 62.4 9.3 37 33-69 123-160 (289)
231 cd00650 LDH_MDH_like NAD-depen 97.8 8.2E-05 1.8E-09 63.2 7.2 171 39-211 1-212 (263)
232 KOG2653 6-phosphogluconate deh 97.8 0.00018 3.9E-09 63.1 9.3 124 36-160 6-137 (487)
233 PF03720 UDPG_MGDP_dh_C: UDP-g 97.8 0.00011 2.4E-09 54.0 6.9 81 46-127 17-100 (106)
234 PRK14030 glutamate dehydrogena 97.8 0.00044 9.5E-09 63.0 12.1 116 31-155 223-368 (445)
235 PRK14167 bifunctional 5,10-met 97.8 0.00016 3.4E-09 62.6 8.7 80 31-131 152-236 (297)
236 TIGR01470 cysG_Nterm siroheme 97.7 0.00014 3.1E-09 59.7 7.9 91 32-127 5-99 (205)
237 PF01113 DapB_N: Dihydrodipico 97.7 0.00012 2.7E-09 55.2 6.9 102 37-143 1-113 (124)
238 PRK09414 glutamate dehydrogena 97.7 0.00026 5.6E-09 64.6 10.1 116 31-155 227-368 (445)
239 PF00208 ELFV_dehydrog: Glutam 97.7 0.00023 5E-09 60.0 9.2 114 33-153 29-169 (244)
240 PRK06444 prephenate dehydrogen 97.7 0.00012 2.5E-09 59.9 7.1 61 37-131 1-62 (197)
241 PLN02477 glutamate dehydrogena 97.7 0.00054 1.2E-08 61.9 11.9 114 31-154 201-334 (410)
242 TIGR01809 Shik-DH-AROM shikima 97.7 9.8E-05 2.1E-09 63.6 6.8 70 33-102 122-200 (282)
243 COG0569 TrkA K+ transport syst 97.7 0.00014 3E-09 60.7 7.3 69 37-105 1-79 (225)
244 PF00185 OTCace: Aspartate/orn 97.7 0.00044 9.6E-09 54.5 9.3 94 35-128 1-120 (158)
245 KOG0023 Alcohol dehydrogenase, 97.7 0.0001 2.2E-09 63.9 6.0 90 35-127 181-278 (360)
246 PRK01710 murD UDP-N-acetylmura 97.6 0.00046 1E-08 63.2 10.6 113 33-146 11-143 (458)
247 cd05291 HicDH_like L-2-hydroxy 97.6 0.0004 8.7E-09 60.4 9.7 95 37-134 1-121 (306)
248 PRK12749 quinate/shikimate deh 97.6 0.0006 1.3E-08 58.9 10.3 70 32-102 120-206 (288)
249 PRK08300 acetaldehyde dehydrog 97.6 0.00041 8.8E-09 60.2 9.2 88 36-128 4-101 (302)
250 PRK04207 glyceraldehyde-3-phos 97.6 0.0003 6.4E-09 62.2 8.5 65 37-101 2-87 (341)
251 KOG2711 Glycerol-3-phosphate d 97.6 0.00029 6.3E-09 61.4 8.1 97 33-131 18-142 (372)
252 PTZ00082 L-lactate dehydrogena 97.6 0.00028 6E-09 61.9 8.0 66 34-100 4-82 (321)
253 PRK00683 murD UDP-N-acetylmura 97.6 0.00024 5.1E-09 64.4 7.9 109 36-144 3-126 (418)
254 COG0026 PurK Phosphoribosylami 97.6 0.00019 4.1E-09 63.3 6.7 63 36-98 1-68 (375)
255 PRK00066 ldh L-lactate dehydro 97.6 0.0007 1.5E-08 59.2 10.1 66 35-101 5-82 (315)
256 PRK09496 trkA potassium transp 97.6 0.00021 4.6E-09 64.9 7.1 69 37-105 1-78 (453)
257 TIGR01850 argC N-acetyl-gamma- 97.5 0.00041 9E-09 61.4 8.4 88 37-129 1-100 (346)
258 TIGR03215 ac_ald_DH_ac acetald 97.5 0.00054 1.2E-08 59.1 8.8 87 37-128 2-95 (285)
259 PTZ00079 NADP-specific glutama 97.5 0.0019 4E-08 59.0 12.5 111 31-148 232-371 (454)
260 TIGR01761 thiaz-red thiazoliny 97.5 0.00081 1.7E-08 59.5 9.9 112 36-150 3-119 (343)
261 PRK06223 malate dehydrogenase; 97.5 0.00089 1.9E-08 58.1 10.0 63 37-100 3-78 (307)
262 PRK06719 precorrin-2 dehydroge 97.5 0.00079 1.7E-08 53.0 8.8 68 32-101 9-79 (157)
263 COG0169 AroE Shikimate 5-dehyd 97.5 0.00079 1.7E-08 58.0 9.4 96 32-130 122-228 (283)
264 COG0334 GdhA Glutamate dehydro 97.5 0.0011 2.4E-08 59.4 10.5 107 33-147 204-330 (411)
265 cd05297 GH4_alpha_glucosidase_ 97.5 0.00022 4.8E-09 64.8 6.2 65 37-101 1-83 (423)
266 PRK11579 putative oxidoreducta 97.5 0.00051 1.1E-08 60.6 8.3 64 37-102 5-74 (346)
267 PRK08306 dipicolinate synthase 97.5 0.0015 3.2E-08 56.7 10.8 111 35-155 1-121 (296)
268 TIGR00036 dapB dihydrodipicoli 97.4 0.0013 2.9E-08 56.1 10.2 107 37-148 2-120 (266)
269 PRK01390 murD UDP-N-acetylmura 97.4 0.00096 2.1E-08 61.1 9.9 113 33-145 6-139 (460)
270 PF02254 TrkA_N: TrkA-N domain 97.4 0.00067 1.4E-08 49.9 7.3 86 39-126 1-94 (116)
271 KOG2304 3-hydroxyacyl-CoA dehy 97.4 6.3E-05 1.4E-09 62.2 1.8 122 34-159 9-160 (298)
272 cd01339 LDH-like_MDH L-lactate 97.4 0.00058 1.3E-08 59.2 7.8 62 39-101 1-75 (300)
273 cd08230 glucose_DH Glucose deh 97.4 0.00069 1.5E-08 59.6 8.4 90 35-129 172-270 (355)
274 PRK03369 murD UDP-N-acetylmura 97.4 0.00041 9E-09 64.1 7.2 111 34-144 10-141 (488)
275 PLN02353 probable UDP-glucose 97.4 0.0015 3.1E-08 60.3 10.7 104 33-139 321-456 (473)
276 PRK10206 putative oxidoreducta 97.4 0.00041 9E-09 61.3 6.9 66 38-103 3-75 (344)
277 PLN02819 lysine-ketoglutarate 97.4 0.00081 1.8E-08 67.0 9.5 89 35-128 568-679 (1042)
278 PRK00856 pyrB aspartate carbam 97.4 0.0015 3.3E-08 56.9 10.1 66 33-100 153-221 (305)
279 PRK09880 L-idonate 5-dehydroge 97.4 0.00088 1.9E-08 58.7 8.8 91 34-129 168-267 (343)
280 TIGR00670 asp_carb_tr aspartat 97.4 0.002 4.4E-08 56.0 10.8 67 33-99 147-223 (301)
281 COG0673 MviM Predicted dehydro 97.4 0.00055 1.2E-08 59.7 7.4 68 36-103 3-78 (342)
282 PRK14027 quinate/shikimate deh 97.4 0.00098 2.1E-08 57.5 8.3 70 33-102 124-204 (283)
283 TIGR02356 adenyl_thiF thiazole 97.3 0.00064 1.4E-08 55.7 6.7 93 32-128 17-143 (202)
284 PRK06270 homoserine dehydrogen 97.3 0.0021 4.5E-08 56.8 10.4 112 37-148 3-146 (341)
285 COG4007 Predicted dehydrogenas 97.3 0.0011 2.4E-08 55.9 8.1 96 48-148 33-133 (340)
286 PRK00436 argC N-acetyl-gamma-g 97.3 0.0011 2.4E-08 58.6 8.6 89 37-130 3-101 (343)
287 PRK12475 thiamine/molybdopteri 97.3 0.0006 1.3E-08 60.2 6.9 83 32-115 20-138 (338)
288 cd05293 LDH_1 A subgroup of L- 97.3 0.0016 3.6E-08 56.8 9.4 113 36-151 3-145 (312)
289 COG1648 CysG Siroheme synthase 97.3 0.00075 1.6E-08 55.7 6.8 90 32-128 8-103 (210)
290 PRK00779 ornithine carbamoyltr 97.3 0.0022 4.8E-08 55.8 9.9 67 33-99 149-224 (304)
291 cd05312 NAD_bind_1_malic_enz N 97.3 0.0074 1.6E-07 51.8 12.8 168 31-202 20-224 (279)
292 PRK10669 putative cation:proto 97.3 0.00077 1.7E-08 63.3 7.5 88 37-126 418-513 (558)
293 PRK08269 3-hydroxybutyryl-CoA 97.3 0.0011 2.5E-08 57.9 8.0 95 47-143 1-128 (314)
294 cd05292 LDH_2 A subgroup of L- 97.3 0.00082 1.8E-08 58.5 7.1 65 37-102 1-77 (308)
295 COG0771 MurD UDP-N-acetylmuram 97.3 0.002 4.2E-08 58.9 9.7 125 34-159 5-157 (448)
296 PLN02342 ornithine carbamoyltr 97.3 0.0027 5.9E-08 56.2 10.2 68 33-100 191-267 (348)
297 TIGR00658 orni_carb_tr ornithi 97.2 0.0022 4.8E-08 55.8 9.4 67 33-99 145-223 (304)
298 COG0540 PyrB Aspartate carbamo 97.2 0.0015 3.2E-08 56.4 8.1 67 33-99 155-231 (316)
299 PRK03659 glutathione-regulated 97.2 0.0011 2.5E-08 62.8 8.2 92 36-129 400-499 (601)
300 PLN02968 Probable N-acetyl-gam 97.2 0.00086 1.9E-08 60.2 7.0 97 34-136 36-142 (381)
301 TIGR03366 HpnZ_proposed putati 97.2 0.0011 2.3E-08 56.5 7.3 90 34-128 119-218 (280)
302 PRK04148 hypothetical protein; 97.2 0.00071 1.5E-08 51.8 5.5 68 34-102 15-87 (134)
303 COG1893 ApbA Ketopantoate redu 97.2 0.0017 3.6E-08 56.6 8.4 141 37-182 1-154 (307)
304 cd00762 NAD_bind_malic_enz NAD 97.2 0.012 2.6E-07 49.9 13.1 166 31-200 20-223 (254)
305 PRK14106 murD UDP-N-acetylmura 97.2 0.0039 8.5E-08 56.7 11.1 112 33-144 2-132 (450)
306 PRK02255 putrescine carbamoylt 97.2 0.0032 6.8E-08 55.7 10.0 67 33-99 151-229 (338)
307 PRK02472 murD UDP-N-acetylmura 97.2 0.0041 9E-08 56.5 11.1 112 33-144 2-132 (447)
308 PRK00141 murD UDP-N-acetylmura 97.2 0.001 2.2E-08 61.3 7.1 114 33-146 12-147 (473)
309 PLN02527 aspartate carbamoyltr 97.2 0.0049 1.1E-07 53.7 10.9 68 33-100 148-226 (306)
310 PRK06349 homoserine dehydrogen 97.2 0.0016 3.5E-08 59.3 8.1 108 37-148 4-125 (426)
311 PRK13814 pyrB aspartate carbam 97.2 0.0023 5E-08 55.8 8.8 66 33-98 154-223 (310)
312 PRK02102 ornithine carbamoyltr 97.2 0.0024 5.3E-08 56.2 8.8 68 33-100 152-232 (331)
313 COG1004 Ugd Predicted UDP-gluc 97.2 0.0016 3.4E-08 58.2 7.5 89 34-126 308-406 (414)
314 PRK04284 ornithine carbamoyltr 97.1 0.0024 5.2E-08 56.3 8.7 67 33-99 152-231 (332)
315 TIGR02964 xanthine_xdhC xanthi 97.1 0.0035 7.6E-08 53.0 9.4 89 36-147 100-188 (246)
316 TIGR02822 adh_fam_2 zinc-bindi 97.1 0.0022 4.9E-08 56.0 8.4 90 35-129 165-255 (329)
317 PF03447 NAD_binding_3: Homose 97.1 0.00052 1.1E-08 50.9 3.7 100 43-147 1-112 (117)
318 PRK01713 ornithine carbamoyltr 97.1 0.0036 7.8E-08 55.2 9.5 96 33-128 153-275 (334)
319 PLN02520 bifunctional 3-dehydr 97.1 0.0017 3.7E-08 60.7 7.9 70 32-101 375-448 (529)
320 PF03435 Saccharop_dh: Sacchar 97.1 0.0007 1.5E-08 60.5 5.0 84 39-127 1-97 (386)
321 PF00056 Ldh_1_N: lactate/mala 97.1 0.00066 1.4E-08 52.4 4.0 65 37-101 1-78 (141)
322 PRK12550 shikimate 5-dehydroge 97.1 0.0026 5.5E-08 54.6 7.9 64 36-102 122-188 (272)
323 PRK05086 malate dehydrogenase; 97.1 0.0049 1.1E-07 53.9 9.8 66 37-102 1-79 (312)
324 PRK05690 molybdopterin biosynt 97.1 0.00069 1.5E-08 57.2 4.3 93 32-128 28-154 (245)
325 TIGR03026 NDP-sugDHase nucleot 97.0 0.0046 1E-07 55.9 9.7 90 33-127 310-409 (411)
326 KOG3124 Pyrroline-5-carboxylat 97.0 0.00097 2.1E-08 56.1 4.8 103 37-143 1-108 (267)
327 cd00757 ThiF_MoeB_HesA_family 97.0 0.0015 3.3E-08 54.4 6.0 93 32-128 17-143 (228)
328 cd05188 MDR Medium chain reduc 97.0 0.006 1.3E-07 50.5 9.7 93 34-131 133-235 (271)
329 PRK03515 ornithine carbamoyltr 97.0 0.0031 6.8E-08 55.6 8.2 67 33-99 153-232 (336)
330 COG5322 Predicted dehydrogenas 97.0 0.0023 4.9E-08 54.5 6.7 101 30-135 161-268 (351)
331 PF13460 NAD_binding_10: NADH( 97.0 0.0012 2.6E-08 52.2 5.0 64 39-104 1-72 (183)
332 PRK01438 murD UDP-N-acetylmura 97.0 0.0029 6.4E-08 58.1 8.1 114 31-144 11-146 (480)
333 PRK11891 aspartate carbamoyltr 97.0 0.0069 1.5E-07 55.1 10.2 68 33-100 238-316 (429)
334 TIGR02717 AcCoA-syn-alpha acet 97.0 0.011 2.3E-07 54.3 11.6 109 34-150 5-125 (447)
335 PRK00421 murC UDP-N-acetylmura 97.0 0.0024 5.2E-08 58.5 7.3 113 34-146 5-133 (461)
336 PRK02006 murD UDP-N-acetylmura 97.0 0.0026 5.7E-08 58.8 7.6 116 33-148 4-149 (498)
337 PRK03562 glutathione-regulated 97.0 0.0031 6.6E-08 60.1 8.1 91 36-128 400-498 (621)
338 PRK09496 trkA potassium transp 97.0 0.0052 1.1E-07 55.9 9.3 91 34-126 229-329 (453)
339 TIGR02853 spore_dpaA dipicolin 96.9 0.012 2.6E-07 50.9 10.7 111 36-156 1-121 (287)
340 cd05294 LDH-like_MDH_nadp A la 96.9 0.01 2.2E-07 51.8 10.2 64 37-101 1-81 (309)
341 PRK06019 phosphoribosylaminoim 96.9 0.0022 4.9E-08 57.2 6.1 64 36-99 2-70 (372)
342 cd08239 THR_DH_like L-threonin 96.9 0.0046 9.9E-08 53.8 8.0 90 35-129 163-263 (339)
343 PRK07688 thiamine/molybdopteri 96.8 0.0031 6.8E-08 55.7 6.7 84 32-116 20-139 (339)
344 PRK13376 pyrB bifunctional asp 96.8 0.019 4.2E-07 53.4 12.2 63 33-95 171-244 (525)
345 cd01338 MDH_choloroplast_like 96.8 0.014 3.1E-07 51.2 10.8 99 37-137 3-135 (322)
346 PRK12562 ornithine carbamoyltr 96.8 0.011 2.3E-07 52.3 9.8 96 33-128 153-275 (334)
347 CHL00194 ycf39 Ycf39; Provisio 96.8 0.0032 7E-08 54.6 6.5 65 37-101 1-73 (317)
348 TIGR02355 moeB molybdopterin s 96.8 0.0043 9.3E-08 52.2 6.8 84 32-116 20-137 (240)
349 PTZ00325 malate dehydrogenase; 96.8 0.0056 1.2E-07 53.7 7.6 69 33-101 5-85 (321)
350 PRK14804 ornithine carbamoyltr 96.8 0.013 2.8E-07 51.2 9.8 68 33-100 150-226 (311)
351 PLN02383 aspartate semialdehyd 96.8 0.0055 1.2E-07 54.3 7.6 88 35-128 6-100 (344)
352 PF02629 CoA_binding: CoA bind 96.8 0.0027 5.9E-08 45.6 4.7 65 36-101 3-71 (96)
353 TIGR03201 dearomat_had 6-hydro 96.7 0.0049 1.1E-07 54.1 7.2 90 35-129 166-273 (349)
354 cd01492 Aos1_SUMO Ubiquitin ac 96.7 0.0032 7E-08 51.3 5.6 38 32-69 17-55 (197)
355 PRK06392 homoserine dehydrogen 96.7 0.0098 2.1E-07 52.3 8.9 111 37-148 1-137 (326)
356 PRK05562 precorrin-2 dehydroge 96.7 0.0077 1.7E-07 50.1 7.8 89 32-127 21-115 (223)
357 PRK10637 cysG siroheme synthas 96.7 0.0067 1.5E-07 55.7 8.1 91 32-128 8-103 (457)
358 cd05283 CAD1 Cinnamyl alcohol 96.7 0.0089 1.9E-07 52.1 8.6 90 35-129 169-264 (337)
359 COG1063 Tdh Threonine dehydrog 96.7 0.0074 1.6E-07 53.5 8.0 90 35-129 168-270 (350)
360 TIGR01202 bchC 2-desacetyl-2-h 96.7 0.0064 1.4E-07 52.6 7.5 87 35-128 144-231 (308)
361 PRK11064 wecC UDP-N-acetyl-D-m 96.7 0.0059 1.3E-07 55.4 7.5 71 31-102 315-396 (415)
362 cd00300 LDH_like L-lactate deh 96.7 0.012 2.5E-07 51.1 9.1 89 39-128 1-115 (300)
363 PLN02586 probable cinnamyl alc 96.7 0.013 2.8E-07 51.8 9.4 90 35-129 183-279 (360)
364 PRK05442 malate dehydrogenase; 96.7 0.027 5.8E-07 49.6 11.2 99 37-137 5-137 (326)
365 PRK08644 thiamine biosynthesis 96.7 0.0087 1.9E-07 49.4 7.6 37 32-68 24-61 (212)
366 TIGR01759 MalateDH-SF1 malate 96.7 0.014 3.1E-07 51.3 9.3 65 37-101 4-88 (323)
367 PLN02178 cinnamyl-alcohol dehy 96.6 0.01 2.2E-07 53.0 8.5 89 35-128 178-273 (375)
368 PF13478 XdhC_C: XdhC Rossmann 96.6 0.0042 9.2E-08 47.7 5.3 85 39-151 1-85 (136)
369 cd01337 MDH_glyoxysomal_mitoch 96.6 0.014 2.9E-07 51.1 9.0 92 37-129 1-118 (310)
370 TIGR03316 ygeW probable carbam 96.6 0.018 3.9E-07 51.3 9.8 68 33-100 167-253 (357)
371 TIGR01772 MDH_euk_gproteo mala 96.6 0.012 2.5E-07 51.5 8.6 96 38-135 1-121 (312)
372 PRK14874 aspartate-semialdehyd 96.6 0.0082 1.8E-07 52.9 7.7 88 36-129 1-95 (334)
373 cd01486 Apg7 Apg7 is an E1-lik 96.6 0.0056 1.2E-07 53.1 6.4 88 38-129 1-141 (307)
374 PLN02602 lactate dehydrogenase 96.6 0.0092 2E-07 53.0 7.9 91 37-128 38-154 (350)
375 cd08281 liver_ADH_like1 Zinc-d 96.6 0.008 1.7E-07 53.2 7.5 90 35-129 191-291 (371)
376 PRK08192 aspartate carbamoyltr 96.6 0.016 3.5E-07 51.2 9.2 67 33-99 156-233 (338)
377 PRK04308 murD UDP-N-acetylmura 96.6 0.014 3.1E-07 53.2 9.1 114 33-146 2-136 (445)
378 PRK07200 aspartate/ornithine c 96.5 0.024 5.1E-07 51.1 10.2 67 33-99 184-269 (395)
379 cd08234 threonine_DH_like L-th 96.5 0.0092 2E-07 51.5 7.4 92 35-131 159-260 (334)
380 cd01487 E1_ThiF_like E1_ThiF_l 96.5 0.0094 2E-07 47.6 6.9 78 38-116 1-111 (174)
381 COG2344 AT-rich DNA-binding pr 96.5 0.0053 1.2E-07 49.5 5.3 66 37-102 85-156 (211)
382 PRK15182 Vi polysaccharide bio 96.5 0.022 4.8E-07 51.9 10.0 98 31-132 309-416 (425)
383 PLN02948 phosphoribosylaminoim 96.5 0.0097 2.1E-07 56.3 8.0 70 32-101 18-92 (577)
384 COG0281 SfcA Malic enzyme [Ene 96.5 0.042 9E-07 49.5 11.4 155 30-200 193-370 (432)
385 PLN00106 malate dehydrogenase 96.5 0.0077 1.7E-07 52.9 6.7 96 35-130 17-137 (323)
386 KOG0022 Alcohol dehydrogenase, 96.5 0.017 3.7E-07 50.3 8.5 53 35-87 192-245 (375)
387 PLN02740 Alcohol dehydrogenase 96.5 0.011 2.4E-07 52.6 7.8 89 35-128 198-300 (381)
388 PF05368 NmrA: NmrA-like famil 96.5 0.0051 1.1E-07 50.8 5.2 65 39-103 1-75 (233)
389 PRK04690 murD UDP-N-acetylmura 96.5 0.0089 1.9E-07 55.0 7.2 111 34-144 6-139 (468)
390 TIGR02825 B4_12hDH leukotriene 96.5 0.0099 2.1E-07 51.4 7.1 89 35-129 138-238 (325)
391 TIGR03451 mycoS_dep_FDH mycoth 96.5 0.012 2.6E-07 51.8 7.8 90 35-129 176-277 (358)
392 cd08242 MDR_like Medium chain 96.5 0.014 2.9E-07 50.3 7.9 90 34-128 154-245 (319)
393 cd08245 CAD Cinnamyl alcohol d 96.5 0.013 2.7E-07 50.7 7.7 90 35-129 162-257 (330)
394 cd00704 MDH Malate dehydrogena 96.5 0.025 5.4E-07 49.7 9.6 99 37-137 1-133 (323)
395 cd08296 CAD_like Cinnamyl alco 96.4 0.015 3.2E-07 50.6 8.2 90 35-129 163-260 (333)
396 PRK03803 murD UDP-N-acetylmura 96.4 0.037 8.1E-07 50.5 11.1 110 35-144 5-132 (448)
397 PF05222 AlaDh_PNT_N: Alanine 96.4 0.033 7.1E-07 42.8 9.1 98 50-157 18-119 (136)
398 TIGR01087 murD UDP-N-acetylmur 96.4 0.025 5.4E-07 51.3 9.8 108 38-146 1-128 (433)
399 TIGR01758 MDH_euk_cyt malate d 96.4 0.022 4.7E-07 50.1 9.0 98 38-137 1-132 (324)
400 PRK08223 hypothetical protein; 96.4 0.014 3.1E-07 50.3 7.6 93 32-127 23-150 (287)
401 cd08255 2-desacetyl-2-hydroxye 96.4 0.016 3.4E-07 48.7 7.9 92 34-130 96-192 (277)
402 cd08237 ribitol-5-phosphate_DH 96.4 0.02 4.4E-07 50.1 8.7 91 35-129 163-257 (341)
403 PRK12769 putative oxidoreducta 96.4 0.013 2.7E-07 56.3 7.9 69 34-102 325-422 (654)
404 PRK08265 short chain dehydroge 96.4 0.011 2.5E-07 49.5 6.8 38 33-70 3-41 (261)
405 PRK10309 galactitol-1-phosphat 96.4 0.014 3E-07 51.0 7.5 89 35-128 160-260 (347)
406 COG0078 ArgF Ornithine carbamo 96.4 0.048 1E-06 47.2 10.4 94 34-127 151-269 (310)
407 PLN00112 malate dehydrogenase 96.3 0.05 1.1E-06 49.8 11.2 101 37-139 101-235 (444)
408 cd01483 E1_enzyme_family Super 96.3 0.033 7.1E-07 42.7 8.7 32 38-69 1-33 (143)
409 PRK07232 bifunctional malic en 96.3 0.17 3.6E-06 49.3 15.2 136 31-181 180-327 (752)
410 PRK01368 murD UDP-N-acetylmura 96.3 0.014 3.1E-07 53.5 7.7 111 34-145 4-129 (454)
411 TIGR01161 purK phosphoribosyla 96.3 0.0074 1.6E-07 53.3 5.6 62 38-99 1-67 (352)
412 TIGR02818 adh_III_F_hyde S-(hy 96.3 0.015 3.3E-07 51.5 7.6 47 35-81 185-232 (368)
413 PRK07231 fabG 3-ketoacyl-(acyl 96.3 0.01 2.2E-07 48.9 6.1 38 33-70 2-40 (251)
414 TIGR01851 argC_other N-acetyl- 96.3 0.023 5.1E-07 49.5 8.4 77 37-128 2-80 (310)
415 PRK08762 molybdopterin biosynt 96.3 0.016 3.4E-07 52.0 7.6 37 32-68 131-168 (376)
416 PRK05600 thiamine biosynthesis 96.3 0.0079 1.7E-07 53.8 5.6 84 32-116 37-154 (370)
417 KOG0399 Glutamate synthase [Am 96.3 0.024 5.2E-07 56.8 9.1 84 16-103 1769-1881(2142)
418 PRK08374 homoserine dehydrogen 96.3 0.016 3.4E-07 51.2 7.4 107 37-148 3-143 (336)
419 COG2910 Putative NADH-flavin r 96.3 0.0071 1.5E-07 48.8 4.7 66 37-102 1-72 (211)
420 PRK07877 hypothetical protein; 96.3 0.013 2.8E-07 56.7 7.2 84 32-117 103-220 (722)
421 PRK03806 murD UDP-N-acetylmura 96.3 0.028 6.1E-07 51.1 9.1 110 33-144 3-129 (438)
422 PRK12809 putative oxidoreducta 96.2 0.028 6.2E-07 53.7 9.4 69 34-102 308-405 (639)
423 TIGR01532 E4PD_g-proteo D-eryt 96.2 0.025 5.5E-07 49.7 8.3 30 38-67 1-34 (325)
424 PRK08328 hypothetical protein; 96.2 0.017 3.6E-07 48.3 6.9 37 32-68 23-60 (231)
425 cd05290 LDH_3 A subgroup of L- 96.2 0.016 3.5E-07 50.5 7.0 64 38-101 1-77 (307)
426 PRK05597 molybdopterin biosynt 96.2 0.0069 1.5E-07 53.9 4.7 37 32-68 24-61 (355)
427 cd08277 liver_alcohol_DH_like 96.2 0.021 4.5E-07 50.5 7.8 47 34-80 183-230 (365)
428 cd08298 CAD2 Cinnamyl alcohol 96.2 0.023 5.1E-07 49.0 7.9 90 34-128 166-256 (329)
429 cd08233 butanediol_DH_like (2R 96.2 0.032 6.8E-07 48.8 8.9 90 35-129 172-273 (351)
430 cd08301 alcohol_DH_plants Plan 96.2 0.026 5.6E-07 49.9 8.3 46 35-80 187-233 (369)
431 cd05284 arabinose_DH_like D-ar 96.2 0.031 6.8E-07 48.4 8.6 92 35-131 167-269 (340)
432 cd08289 MDR_yhfp_like Yhfp put 96.2 0.026 5.6E-07 48.5 8.0 89 35-129 146-244 (326)
433 TIGR01381 E1_like_apg7 E1-like 96.2 0.014 3.1E-07 55.4 6.7 36 32-67 334-370 (664)
434 cd08293 PTGR2 Prostaglandin re 96.1 0.021 4.5E-07 49.7 7.4 87 36-128 155-254 (345)
435 PRK11863 N-acetyl-gamma-glutam 96.1 0.026 5.7E-07 49.3 7.9 77 37-128 3-81 (313)
436 PRK12862 malic enzyme; Reviewe 96.1 0.1 2.2E-06 50.9 12.7 133 31-181 188-335 (763)
437 cd08231 MDR_TM0436_like Hypoth 96.1 0.023 5E-07 49.9 7.7 90 35-129 177-281 (361)
438 PLN02662 cinnamyl-alcohol dehy 96.1 0.024 5.2E-07 48.8 7.6 66 36-101 4-85 (322)
439 PRK05786 fabG 3-ketoacyl-(acyl 96.1 0.017 3.7E-07 47.3 6.4 38 33-70 2-40 (238)
440 cd08295 double_bond_reductase_ 96.1 0.022 4.8E-07 49.6 7.4 88 35-128 151-251 (338)
441 PLN03154 putative allyl alcoho 96.1 0.02 4.3E-07 50.5 7.1 88 35-128 158-258 (348)
442 PLN02514 cinnamyl-alcohol dehy 96.1 0.032 7E-07 49.2 8.4 91 34-129 179-276 (357)
443 PRK04663 murD UDP-N-acetylmura 96.0 0.068 1.5E-06 48.7 10.6 110 34-144 4-132 (438)
444 PRK07411 hypothetical protein; 96.0 0.015 3.2E-07 52.4 6.1 87 32-119 34-154 (390)
445 KOG0024 Sorbitol dehydrogenase 96.0 0.035 7.6E-07 48.5 8.1 49 35-83 169-218 (354)
446 PRK03815 murD UDP-N-acetylmura 96.0 0.06 1.3E-06 48.7 10.0 104 37-144 1-113 (401)
447 TIGR01296 asd_B aspartate-semi 96.0 0.016 3.5E-07 51.2 6.1 86 38-128 1-92 (339)
448 cd08260 Zn_ADH6 Alcohol dehydr 96.0 0.032 6.9E-07 48.6 7.9 90 35-129 165-265 (345)
449 PRK15076 alpha-galactosidase; 96.0 0.019 4.1E-07 52.4 6.6 66 37-102 2-85 (431)
450 COG3288 PntA NAD/NADP transhyd 96.0 0.011 2.3E-07 51.3 4.7 96 32-128 160-281 (356)
451 PLN03209 translocon at the inn 96.0 0.014 3E-07 54.9 5.8 69 34-102 78-169 (576)
452 TIGR00112 proC pyrroline-5-car 96.0 0.015 3.3E-07 48.9 5.6 81 60-144 10-91 (245)
453 cd01485 E1-1_like Ubiquitin ac 96.0 0.023 5.1E-07 46.3 6.5 37 32-68 15-52 (198)
454 cd08269 Zn_ADH9 Alcohol dehydr 96.0 0.044 9.4E-07 46.6 8.5 91 34-129 128-230 (312)
455 cd01336 MDH_cytoplasmic_cytoso 96.0 0.02 4.2E-07 50.4 6.4 65 37-101 3-87 (325)
456 TIGR03466 HpnA hopanoid-associ 96.0 0.014 3E-07 50.2 5.4 65 37-101 1-73 (328)
457 cd08300 alcohol_DH_class_III c 96.0 0.028 6E-07 49.8 7.4 89 35-128 186-288 (368)
458 PRK08324 short chain dehydroge 95.9 0.021 4.6E-07 55.0 7.0 39 32-70 418-457 (681)
459 TIGR00978 asd_EA aspartate-sem 95.9 0.031 6.8E-07 49.4 7.5 87 37-128 1-104 (341)
460 PRK10083 putative oxidoreducta 95.9 0.039 8.5E-07 47.8 8.0 92 34-130 159-261 (339)
461 PLN02827 Alcohol dehydrogenase 95.9 0.038 8.1E-07 49.3 8.1 89 35-128 193-295 (378)
462 TIGR01757 Malate-DH_plant mala 95.9 0.11 2.5E-06 46.7 10.9 99 37-137 45-177 (387)
463 PF00389 2-Hacid_dh: D-isomer 95.9 0.016 3.4E-07 43.9 4.7 119 47-204 7-128 (133)
464 cd08285 NADP_ADH NADP(H)-depen 95.9 0.039 8.5E-07 48.2 7.9 89 35-128 166-266 (351)
465 PRK08040 putative semialdehyde 95.9 0.029 6.2E-07 49.6 7.0 87 35-128 3-97 (336)
466 cd05280 MDR_yhdh_yhfp Yhdh and 95.9 0.049 1.1E-06 46.6 8.4 45 36-80 147-192 (325)
467 TIGR01318 gltD_gamma_fam gluta 95.8 0.049 1.1E-06 50.1 8.8 71 34-104 139-238 (467)
468 cd08274 MDR9 Medium chain dehy 95.8 0.049 1.1E-06 47.3 8.4 87 35-128 177-273 (350)
469 COG2227 UbiG 2-polyprenyl-3-me 95.8 0.036 7.9E-07 46.4 6.9 87 34-126 58-159 (243)
470 PRK02705 murD UDP-N-acetylmura 95.8 0.04 8.7E-07 50.3 7.9 108 38-145 2-134 (459)
471 PF04016 DUF364: Domain of unk 95.8 0.032 7E-07 43.4 6.2 87 34-128 9-95 (147)
472 cd08270 MDR4 Medium chain dehy 95.8 0.057 1.2E-06 45.8 8.4 89 35-129 132-223 (305)
473 PRK09422 ethanol-active dehydr 95.8 0.053 1.2E-06 46.9 8.3 90 35-129 162-262 (338)
474 PRK14805 ornithine carbamoyltr 95.8 0.12 2.6E-06 45.0 10.4 67 33-100 144-222 (302)
475 cd08284 FDH_like_2 Glutathione 95.7 0.043 9.3E-07 47.6 7.7 93 34-131 166-269 (344)
476 PRK07806 short chain dehydroge 95.7 0.061 1.3E-06 44.4 8.2 37 33-69 3-40 (248)
477 TIGR01771 L-LDH-NAD L-lactate 95.7 0.055 1.2E-06 47.0 8.1 88 41-128 1-113 (299)
478 PF00107 ADH_zinc_N: Zinc-bind 95.7 0.0076 1.7E-07 44.9 2.4 80 47-131 2-92 (130)
479 PRK12861 malic enzyme; Reviewe 95.7 0.31 6.7E-06 47.6 13.8 152 31-200 184-357 (764)
480 PLN02214 cinnamoyl-CoA reducta 95.7 0.032 7E-07 49.0 6.7 69 33-101 7-90 (342)
481 PLN00141 Tic62-NAD(P)-related 95.7 0.033 7.2E-07 46.5 6.4 70 33-102 14-95 (251)
482 TIGR01082 murC UDP-N-acetylmur 95.6 0.033 7.2E-07 50.8 6.8 108 39-146 2-125 (448)
483 PLN02989 cinnamyl-alcohol dehy 95.6 0.046 9.9E-07 47.3 7.4 67 35-101 4-86 (325)
484 TIGR01019 sucCoAalpha succinyl 95.6 0.089 1.9E-06 45.5 9.0 107 36-148 6-116 (286)
485 PRK07878 molybdopterin biosynt 95.6 0.03 6.5E-07 50.5 6.3 84 32-116 38-155 (392)
486 PLN02427 UDP-apiose/xylose syn 95.6 0.033 7.1E-07 49.6 6.5 71 30-100 8-94 (386)
487 PLN02896 cinnamyl-alcohol dehy 95.6 0.033 7.1E-07 48.9 6.4 71 31-101 5-88 (353)
488 PRK15181 Vi polysaccharide bio 95.6 0.027 6E-07 49.5 5.9 37 33-69 12-49 (348)
489 PRK06728 aspartate-semialdehyd 95.6 0.042 9.1E-07 48.7 7.0 87 35-128 4-99 (347)
490 PRK06182 short chain dehydroge 95.6 0.028 6.1E-07 47.4 5.7 67 35-101 2-83 (273)
491 cd08294 leukotriene_B4_DH_like 95.6 0.047 1E-06 46.9 7.3 88 35-128 143-241 (329)
492 PF00070 Pyr_redox: Pyridine n 95.6 0.03 6.6E-07 38.4 4.9 33 38-70 1-33 (80)
493 COG1062 AdhC Zn-dependent alco 95.5 0.067 1.5E-06 47.1 7.9 89 35-128 185-285 (366)
494 PRK05678 succinyl-CoA syntheta 95.5 0.11 2.4E-06 45.0 9.2 109 36-150 8-120 (291)
495 PRK04523 N-acetylornithine car 95.5 0.063 1.4E-06 47.4 7.8 68 33-100 165-252 (335)
496 COG0493 GltD NADPH-dependent g 95.5 0.065 1.4E-06 49.3 8.2 70 32-101 119-217 (457)
497 cd08232 idonate-5-DH L-idonate 95.5 0.061 1.3E-06 46.6 7.7 90 35-129 165-263 (339)
498 PRK05866 short chain dehydroge 95.5 0.027 5.9E-07 48.4 5.4 39 31-69 35-74 (293)
499 PLN02695 GDP-D-mannose-3',5'-e 95.5 0.021 4.5E-07 50.9 4.7 66 35-100 20-93 (370)
500 cd08252 AL_MDR Arginate lyase 95.5 0.078 1.7E-06 45.7 8.2 88 36-128 150-248 (336)
No 1
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=6.7e-57 Score=398.99 Aligned_cols=221 Identities=89% Similarity=1.463 Sum_probs=205.0
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (221)
|+||++.|++.++++++++|.|........+.+|.||||||||+|+||+.+|++|++||++|++||++....+.....|+
T Consensus 164 ~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~ 243 (386)
T PLN03139 164 MRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA 243 (386)
T ss_pred HHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc
Confidence 58999999999999999999997532223467999999999999999999999999999999999997655555556677
Q ss_pred eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (221)
Q Consensus 81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~ 160 (221)
....++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||++||+++|+++|++|+|.||++|||++||+
T Consensus 244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPl 323 (386)
T PLN03139 244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPA 323 (386)
T ss_pred eecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence 76679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccccCCccCCCCC
Q 027577 161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221 (221)
Q Consensus 161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~~~~~~~~ 221 (221)
|.+||||.+||+++|||+||.|.+ .++...+.+|+.+|++|+++.++|+|+..++||++|+
T Consensus 324 p~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~~~~~i~~~~~~~~~~~ 386 (386)
T PLN03139 324 PKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPAQNYIVKEGKLASQYQ 386 (386)
T ss_pred CCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCCCcceeecCCccccccC
Confidence 999999999999999999999998 7778889999999999999999999999999999996
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=7.5e-57 Score=391.29 Aligned_cols=201 Identities=35% Similarity=0.607 Sum_probs=185.6
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (221)
++||+++|+++.+++++++|.|.+.. ..+.+|+||||||||+|+||+.+|+++++|||+|++||+... .+.....++
T Consensus 109 ~~~L~~~R~~~~~~~~~~~g~W~~~~--~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~-~~~~~~~~~ 185 (324)
T COG0111 109 ALLLALARRIPDADASQRRGEWDRKA--FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSP-RERAGVDGV 185 (324)
T ss_pred HHHHHHhcCchhhHHHHHcCCccccc--cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCc-hhhhccccc
Confidence 58999999999999999999999732 456799999999999999999999999999999999999432 223344556
Q ss_pred eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (221)
Q Consensus 81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~ 160 (221)
....++++++++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||+
T Consensus 186 ~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl 265 (324)
T COG0111 186 VGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPL 265 (324)
T ss_pred eecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCC
Confidence 66778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC
Q 027577 161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF 204 (221)
Q Consensus 161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~ 204 (221)
|.+||||++|||++|||+||+|.| .++...+.+|+.+|++|++.
T Consensus 266 ~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~ 311 (324)
T COG0111 266 PADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPV 311 (324)
T ss_pred CCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999998 78888899999999999974
No 3
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-55 Score=388.25 Aligned_cols=221 Identities=50% Similarity=0.936 Sum_probs=203.2
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (221)
|+||++.|++..+++++++|.|........+.+|.||||||||+|+||+.+|++|++|||+|++||++....+.....++
T Consensus 157 ~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~ 236 (385)
T PRK07574 157 MMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL 236 (385)
T ss_pred HHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc
Confidence 58999999999999999999998643223467899999999999999999999999999999999997644444455677
Q ss_pred eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (221)
Q Consensus 81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~ 160 (221)
....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||++||+++|++|+|.||++|||++||+
T Consensus 237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPl 316 (385)
T PRK07574 237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPA 316 (385)
T ss_pred eecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCC
Confidence 66679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccccCCccCC----CCC
Q 027577 161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP----QYR 221 (221)
Q Consensus 161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~~~~~----~~~ 221 (221)
|.+||||++||+++|||+||+|.+ .++...+.+|+.+|++|+++...++|+..+++|| ||+
T Consensus 317 p~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 383 (385)
T PRK07574 317 PADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEYLIVDGGRLAGTGAHSYT 383 (385)
T ss_pred CCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCceEecCCcccCccccccc
Confidence 999999999999999999999999 6777889999999999999988999999999998 774
No 4
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.7e-53 Score=371.14 Aligned_cols=207 Identities=32% Similarity=0.509 Sum_probs=184.9
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEccCHHHHHHHHHHc-cCCCeEEEEcCCCCChhHHHhc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKET 78 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~ 78 (221)
+|||++.|++...++.+++|.|.... ....+.+|.|||+||||+|+||+.+|++++ +|||+|++||+... .+.....
T Consensus 109 ~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~-~~~~~~~ 187 (323)
T PRK15409 109 ALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHH-KEAEERF 187 (323)
T ss_pred HHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCc-hhhHHhc
Confidence 58999999999999999999997431 112367999999999999999999999998 99999999998642 2333445
Q ss_pred CceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC
Q 027577 79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 158 (221)
Q Consensus 79 g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e 158 (221)
++... ++++++++||+|++|+|+|++|+++++++.|+.||+|++|||++||++||++||+++|++|+|.||+||||++|
T Consensus 188 ~~~~~-~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~E 266 (323)
T PRK15409 188 NARYC-DLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQE 266 (323)
T ss_pred CcEec-CHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCC
Confidence 66654 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccc
Q 027577 159 PAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIV 211 (221)
Q Consensus 159 p~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~ 211 (221)
|++.++|||++||+++|||+||.|.| .++...+.+|+.+|++|+++ .|.|+
T Consensus 267 P~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~--~~~vn 319 (323)
T PRK15409 267 PLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVE--KNCVN 319 (323)
T ss_pred CCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCC--CcccC
Confidence 99999999999999999999999999 67778899999999999864 45554
No 5
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=9.1e-53 Score=366.05 Aligned_cols=200 Identities=29% Similarity=0.489 Sum_probs=179.5
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcc----cCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGV----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~----~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 76 (221)
++||+++|++...++.+++|.|..... ...+.+|.||||||||+|+||+.+|+++++|||+|++||+.... .
T Consensus 109 ~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~--- 184 (317)
T PRK06487 109 ALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A--- 184 (317)
T ss_pred HHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c---
Confidence 579999999999999999999975421 12346899999999999999999999999999999999985321 1
Q ss_pred hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577 77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (221)
Q Consensus 77 ~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~ 156 (221)
.... .++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|.||+||||+
T Consensus 185 --~~~~-~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~ 261 (317)
T PRK06487 185 --RPDR-LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLS 261 (317)
T ss_pred --cccc-cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence 1222 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC--CCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCc
Q 027577 157 PQPAPKDHPWRY--MPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQ 207 (221)
Q Consensus 157 ~ep~~~~~~l~~--~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~ 207 (221)
+||++.++|||. +||+++|||+||+|.+ .++...+.+|+.+|++|++++.+
T Consensus 262 ~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~v 316 (317)
T PRK06487 262 VEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPLRVV 316 (317)
T ss_pred CCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 999999999995 8999999999999998 67788899999999999876543
No 6
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=1.5e-52 Score=364.19 Aligned_cols=202 Identities=40% Similarity=0.677 Sum_probs=185.7
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCc--ccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAG--VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET 78 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~--~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 78 (221)
+|||++.|++.++++.+++|.|.... ....+.+++|||+||||+|+||+++|+++++|||+|++||+++. ++..+..
T Consensus 109 aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~ 187 (324)
T COG1052 109 ALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKEL 187 (324)
T ss_pred HHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhc
Confidence 58999999999999999999998753 22456789999999999999999999999999999999999875 5555566
Q ss_pred CceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC
Q 027577 79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 158 (221)
Q Consensus 79 g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e 158 (221)
+..+++ +++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||++||++|+|.||++|||++|
T Consensus 188 ~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~E 266 (324)
T COG1052 188 GARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENE 266 (324)
T ss_pred Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCC
Confidence 677774 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC---eEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC
Q 027577 159 PAPKDHPWRYMPN---QAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF 204 (221)
Q Consensus 159 p~~~~~~l~~~~n---~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~ 204 (221)
|.+.++||+.++| +++|||+|++|.| .++...+.+|+.+|++|+..
T Consensus 267 p~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~ 317 (324)
T COG1052 267 PALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVP 317 (324)
T ss_pred CCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9988999998877 9999999999999 66777899999999998864
No 7
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-52 Score=362.31 Aligned_cols=197 Identities=23% Similarity=0.405 Sum_probs=177.4
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcc-c---CcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGV-A---YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~-~---~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 76 (221)
+|||+++|++..+++.+++|.|..... . ..+.+|.||||||||+|+||+.+|+++++|||+|++||++....
T Consensus 106 ~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---- 181 (311)
T PRK08410 106 AMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---- 181 (311)
T ss_pred HHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----
Confidence 589999999999999999999975321 1 12468999999999999999999999999999999999864221
Q ss_pred hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577 77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (221)
Q Consensus 77 ~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~ 156 (221)
..++.. .++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|. |+||||+
T Consensus 182 ~~~~~~-~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~ 259 (311)
T PRK08410 182 NEEYER-VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLE 259 (311)
T ss_pred ccCcee-ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence 224444 48999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCCCCCCCCCC---CCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCC
Q 027577 157 PQPAPKDHPWRYM---PNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGED 203 (221)
Q Consensus 157 ~ep~~~~~~l~~~---~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~ 203 (221)
+||++.++|||.+ |||++|||+||+|.+ .++...+.+|+.+|++|++
T Consensus 260 ~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 260 KEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred CCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999987 899999999999999 6777889999999999864
No 8
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=9.7e-52 Score=358.51 Aligned_cols=208 Identities=24% Similarity=0.348 Sum_probs=186.7
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (221)
++||++.|++....+.+++|.|... ...++.|+||||||+|+||+.+|++|++|||+|++||++......... +
T Consensus 105 ~~~L~~~r~~~~~~~~~~~~~w~~~----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~ 178 (312)
T PRK15469 105 SQVLHWFRRFDDYQALQNSSHWQPL----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--F 178 (312)
T ss_pred HHHHHHHcChHHHHHHHHhCCcCCC----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--e
Confidence 4799999999999899999999743 245799999999999999999999999999999999986533211111 1
Q ss_pred eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (221)
Q Consensus 81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~ 160 (221)
....++++++++||+|++|+|+|++|+++++++.|+.||+|++|||++||++||+++|+++|++|+|.||++|||++||+
T Consensus 179 ~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl 258 (312)
T PRK15469 179 AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPL 258 (312)
T ss_pred cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCC
Confidence 12358999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEECCCCCcCCHHHHHHHHHHHHHHHHHcCCCCCCccccccCCcc
Q 027577 161 PKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGEL 216 (221)
Q Consensus 161 ~~~~~l~~~~n~~~tPH~a~~t~~~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~~~ 216 (221)
|.++|||++||+++|||+||+|.+.++...+.+|+++|.+|++ +.|.|+++.+|
T Consensus 259 ~~~~pl~~~~nvi~TPHiag~t~~~~~~~~~~~n~~~~~~g~~--~~~~V~~~~gY 312 (312)
T PRK15469 259 PPESPLWQHPRVAITPHVAAVTRPAEAVEYISRTIAQLEKGER--VCGQVDRARGY 312 (312)
T ss_pred CCCChhhcCCCeEECCcCCCCcCHHHHHHHHHHHHHHHHcCCC--CcccCCcccCC
Confidence 9999999999999999999999987778888999999999997 58889888776
No 9
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3e-51 Score=355.99 Aligned_cols=197 Identities=25% Similarity=0.441 Sum_probs=175.9
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcc----cCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGV----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~----~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 76 (221)
++||+++|++...++.+++|.|..... ...+.+|.||||||||+|.||+.+|+++++|||+|++||+.... .
T Consensus 108 ~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-~--- 183 (314)
T PRK06932 108 GMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-V--- 183 (314)
T ss_pred HHHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc-c---
Confidence 579999999999999999999974321 11346899999999999999999999999999999999975321 1
Q ss_pred hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577 77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (221)
Q Consensus 77 ~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~ 156 (221)
.... ..++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|.||+||||+
T Consensus 184 -~~~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~ 261 (314)
T PRK06932 184 -CREG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLV 261 (314)
T ss_pred -cccc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCC
Confidence 1111 35899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC----CCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCC
Q 027577 157 PQPAPKDHPWR----YMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGED 203 (221)
Q Consensus 157 ~ep~~~~~~l~----~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~ 203 (221)
+||++.++||| ++|||++|||+||+|.+ .++...+.+|+.+|++|++
T Consensus 262 ~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 262 KEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred CCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999998 48999999999999998 6777889999999998863
No 10
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=5.6e-51 Score=365.37 Aligned_cols=215 Identities=27% Similarity=0.457 Sum_probs=188.7
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (221)
++||+++|++..+++.+++|.|.+.. ..+.+|.||||||||+|+||+.+|+++++|||+|++||++.... ..++
T Consensus 118 ~l~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~ 191 (409)
T PRK11790 118 GEIILLLRGIPEKNAKAHRGGWNKSA--AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNA 191 (409)
T ss_pred HHHHHHHcChHHHHHHHHcCcccccc--cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCc
Confidence 58999999999999999999998642 34679999999999999999999999999999999999854211 1234
Q ss_pred eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (221)
Q Consensus 81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~ 160 (221)
....++++++++||+|++|+|+|++|+++++++.|+.||+|++|||+|||++||++||+++|++|+|.||++|||++||+
T Consensus 192 ~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~ 271 (409)
T PRK11790 192 RQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPK 271 (409)
T ss_pred eecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC----CCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCccccccCCcc-CCCCC
Q 027577 161 PK----DHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQNYIVKAGEL-APQYR 221 (221)
Q Consensus 161 ~~----~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n~v~~~~~~-~~~~~ 221 (221)
+. ++|||.+||+++|||+||+|.| .++...+.+|+.+|++|+++ +.+|.......+ .+.||
T Consensus 272 ~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn~~~~~~~~~~~~~r 340 (409)
T PRK11790 272 SNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAVNFPEVSLPEHPGGHR 340 (409)
T ss_pred CccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCcceeccccccCCCCCCce
Confidence 86 4799999999999999999998 67778899999999998876 777765555543 24443
No 11
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=1.1e-50 Score=355.10 Aligned_cols=206 Identities=34% Similarity=0.567 Sum_probs=183.1
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcc-----cCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 75 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~-----~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 75 (221)
++||+++|++..+++.+++|.|..... ...+.+|.||||||||+|+||+.+|+++++||++|++||++... ...
T Consensus 110 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~ 188 (333)
T PRK13243 110 ALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP-EAE 188 (333)
T ss_pred HHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh-hhH
Confidence 589999999999999999999974311 11357899999999999999999999999999999999987533 233
Q ss_pred HhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577 76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (221)
Q Consensus 76 ~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~ 155 (221)
...++.. .++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|+++|++|+|.||+||||
T Consensus 189 ~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~ 267 (333)
T PRK13243 189 KELGAEY-RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVF 267 (333)
T ss_pred HHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccC
Confidence 3445554 489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccc
Q 027577 156 NPQPAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIV 211 (221)
Q Consensus 156 ~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~ 211 (221)
++||++ ++|||++||+++|||+||+|.+ .++...+.+|+.+|++|+++ .|.|+
T Consensus 268 ~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~--~~~v~ 322 (333)
T PRK13243 268 EEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVP--PTLVN 322 (333)
T ss_pred CCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCC--CcccC
Confidence 999987 8999999999999999999998 67778899999999999864 34444
No 12
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1e-50 Score=356.90 Aligned_cols=201 Identities=32% Similarity=0.392 Sum_probs=179.6
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH----
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---- 76 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~---- 76 (221)
++||+++|++....+.+++|.|... .+.+|.||||||||+|.||+.+|+++++|||+|++||++........
T Consensus 128 ~l~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~ 203 (347)
T PLN02928 128 YLMLGLLRKQNEMQISLKARRLGEP----IGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIP 203 (347)
T ss_pred HHHHHHHhCHHHHHHHHHcCCcccc----cccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccc
Confidence 4799999999999999999999642 35689999999999999999999999999999999998642211110
Q ss_pred -----h---cCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 77 -----E---TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 77 -----~---~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
. ... ...++++++++||+|++|+|+|++|+++++++.|+.||+|++|||+|||++||++||+++|++|+|.
T Consensus 204 ~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~ 282 (347)
T PLN02928 204 NGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG 282 (347)
T ss_pred cccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 0 011 3458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCC
Q 027577 149 GYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPV 206 (221)
Q Consensus 149 ~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~ 206 (221)
||+||||++||++.++|||++||+++|||+||+|.+ .++...+.+|+.+|++|+++..
T Consensus 283 gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~ 342 (347)
T PLN02928 283 GLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLTG 342 (347)
T ss_pred EEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHCCCCCCc
Confidence 999999999999999999999999999999999998 6777889999999999998643
No 13
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=3.6e-50 Score=356.77 Aligned_cols=207 Identities=23% Similarity=0.300 Sum_probs=179.0
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEccCHHHHHHHHHHc-cCCCeEEEEcCCCCChhH--HH
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQL--EK 76 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~--~~ 76 (221)
+|||++.|++..+++.+++|.|..+. ....+.+|.|+||||||+|+||+.+|++++ +|||+|++||++...... ..
T Consensus 129 ~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~ 208 (386)
T PLN02306 129 SLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVT 208 (386)
T ss_pred HHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhh
Confidence 58999999999999999999985321 112467899999999999999999999985 999999999986532110 01
Q ss_pred hcC------------ceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 77 ETG------------AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 77 ~~g------------~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
..+ +....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++
T Consensus 209 ~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 209 AYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred hhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 111 12235899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCcc
Q 027577 145 GHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQN 208 (221)
Q Consensus 145 g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n 208 (221)
|+|.||+||||++||++ ++|||++|||++|||+||+|.+ .++...+.+|+.+|++|+++ +.+|
T Consensus 289 g~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~ 354 (386)
T PLN02306 289 NPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPN 354 (386)
T ss_pred CCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence 99999999999999975 5789999999999999999988 67777899999999999986 5555
No 14
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=1.5e-51 Score=331.46 Aligned_cols=177 Identities=39% Similarity=0.673 Sum_probs=155.1
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (221)
||||++.|++..+++++++|.|.. .....+.+|.|+||||||+|+||+.+|+++++|||+|++||++..........++
T Consensus 2 ~l~L~~~R~~~~~~~~~~~~~W~~-~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 2 ALMLALLRRLPEYHEAQRNGEWAS-RERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHTTHHHHHHHHHTTBHHH-HTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred hHHHHHHhCHHHHHHHHHcCCCCC-CcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 589999999999999999999921 1234578999999999999999999999999999999999997644333455566
Q ss_pred eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (221)
Q Consensus 81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~ 160 (221)
.. .++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||++||++||++||+++|++|++.||++|||++||+
T Consensus 81 ~~-~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~ 159 (178)
T PF02826_consen 81 EY-VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL 159 (178)
T ss_dssp EE-SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred ee-eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence 54 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEECCCCC
Q 027577 161 PKDHPWRYMPNQAMTPHVS 179 (221)
Q Consensus 161 ~~~~~l~~~~n~~~tPH~a 179 (221)
+.++|||++||+++|||+|
T Consensus 160 ~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 160 PADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp STTHHHHTSTTEEEESS-T
T ss_pred CCCChHHcCCCEEEeCccC
Confidence 9999999999999999997
No 15
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=6.7e-50 Score=368.64 Aligned_cols=211 Identities=33% Similarity=0.548 Sum_probs=189.8
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (221)
+|||+++|+++.+++.+++|.|.+.. ..+.+|.||||||||+|+||+.+|++|++|||+|++||++. ..+.....++
T Consensus 105 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~ 181 (525)
T TIGR01327 105 AMLLAAARNIPQADASLKEGEWDRKA--FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI-SPERAEQLGV 181 (525)
T ss_pred HHHHHHhcCHHHHHHHHHcCCccccc--cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCC
Confidence 58999999999999999999997542 34678999999999999999999999999999999999853 3344455677
Q ss_pred eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (221)
Q Consensus 81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~ 160 (221)
...+++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||++||+++|++|+|.||+||||++||+
T Consensus 182 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 261 (525)
T TIGR01327 182 ELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP 261 (525)
T ss_pred EEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC
Confidence 76678999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCccccccCCc
Q 027577 161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQNYIVKAGE 215 (221)
Q Consensus 161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n~v~~~~~ 215 (221)
.++|||++|||++|||+|++|.+ .++...+.+|+.+|++|+++ +.+|.+....+
T Consensus 262 -~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~ 318 (525)
T TIGR01327 262 -TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDAD 318 (525)
T ss_pred -CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCCCCch
Confidence 58999999999999999999999 67778899999999999976 66777665444
No 16
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-49 Score=364.56 Aligned_cols=210 Identities=33% Similarity=0.558 Sum_probs=189.0
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (221)
+|||+++|+++.+++.+++|.|.... ..+.+|.||||||||+|+||+.+|+++++|||+|++||++. ..+.....++
T Consensus 107 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~ 183 (526)
T PRK13581 107 ALMLALARNIPQAHASLKAGKWERKK--FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPERAAQLGV 183 (526)
T ss_pred HHHHHHHcCHHHHHHHHHcCCCCccC--ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCC
Confidence 58999999999999999999997542 34678999999999999999999999999999999999864 3344455677
Q ss_pred eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (221)
Q Consensus 81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~ 160 (221)
... ++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||++||++||+++|++|+|.||+||||++||+
T Consensus 184 ~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 262 (526)
T PRK13581 184 ELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPP 262 (526)
T ss_pred EEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCC
Confidence 766 8999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCccccccCCc
Q 027577 161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQNYIVKAGE 215 (221)
Q Consensus 161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n~v~~~~~ 215 (221)
+ ++|||++||+++|||+|++|.+ .++...+.+|+.+|++|+++ +.+|......+
T Consensus 263 ~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~ 319 (526)
T PRK13581 263 T-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLPSITAE 319 (526)
T ss_pred C-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCCCCchh
Confidence 6 8999999999999999999999 67778899999999999976 66666655444
No 17
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-49 Score=335.96 Aligned_cols=209 Identities=33% Similarity=0.527 Sum_probs=191.5
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (221)
++|++++|+++++...+++|+|.+.. +.|.+|.|||+||+|+|+||+.+|++++.+||+|++||+-. +.+.++..|+
T Consensus 113 gli~SLaR~i~~A~~s~k~g~wnr~~--~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~-~~~~~~a~gv 189 (406)
T KOG0068|consen 113 GLILSLARQIGQASASMKEGKWNRVK--YLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPIT-PMALAEAFGV 189 (406)
T ss_pred HHHHHHhhhcchhheeeecCceeecc--eeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCC-chHHHHhccc
Confidence 47999999999999999999998764 56889999999999999999999999999999999999843 5667778899
Q ss_pred eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (221)
Q Consensus 81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~ 160 (221)
+.+ +++|+++.||+|.+|+|++|+|+++++.+.|+.||+|..+||++||++||+.||.++|++|++.||++|||+.||+
T Consensus 190 q~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp 268 (406)
T KOG0068|consen 190 QLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPP 268 (406)
T ss_pred eee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCC
Confidence 876 8999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC--CCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccccC
Q 027577 161 PK--DHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKA 213 (221)
Q Consensus 161 ~~--~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~ 213 (221)
.. ++.|.++|||++|||+|+.|.| .+++..+.+++..|.+|.....+|.....
T Consensus 269 ~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~~~~g~Vna~~v~ 325 (406)
T KOG0068|consen 269 KNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYINGNSAGSVNAPEVA 325 (406)
T ss_pred ccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhccCccceechhhhh
Confidence 65 7889999999999999999999 77777889999999999555666665543
No 18
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-47 Score=330.40 Aligned_cols=197 Identities=24% Similarity=0.420 Sum_probs=174.8
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (221)
++||+++|++...++.+++|.|... .+.+|.||||||||+|+||+.+|+++++||++|++||++.... ++
T Consensus 91 ~l~L~l~R~i~~~~~~~~~g~w~~~----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~ 160 (303)
T PRK06436 91 ALLLAWAKNICENNYNMKNGNFKQS----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND------GI 160 (303)
T ss_pred HHHHHHHcChHHHHHHHHcCCCCCC----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc------Cc
Confidence 5899999999999999999999853 3468999999999999999999999999999999999864321 22
Q ss_pred e-ecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577 81 K-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (221)
Q Consensus 81 ~-~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep 159 (221)
. ...++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|.++|++|++.+|++|||++||
T Consensus 161 ~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP 240 (303)
T PRK06436 161 SSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEP 240 (303)
T ss_pred ccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCC
Confidence 2 145899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCeEECCCCCc-CCHH--HHHHHHHHHHHHHHHcCCCCCCccccccC
Q 027577 160 APKDHPWRYMPNQAMTPHVSG-TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKA 213 (221)
Q Consensus 160 ~~~~~~l~~~~n~~~tPH~a~-~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~ 213 (221)
++.++ .+||+++|||++| .|.+ .++...+.+|+.+|++|++ .|.|+++
T Consensus 241 ~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~---~~~V~~~ 291 (303)
T PRK06436 241 IITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP---KNIVRKE 291 (303)
T ss_pred CCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC---CceEchH
Confidence 88775 6899999999865 7777 5666778999999999985 4666554
No 19
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=1.5e-47 Score=330.45 Aligned_cols=205 Identities=43% Similarity=0.731 Sum_probs=188.3
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (221)
+++|.+.|++..+++++++|.|.+......+..+.||||||+|+|+||+.+|++|++||+.+.+++|++...+.+.+.+.
T Consensus 127 ~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 127 SLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA 206 (336)
T ss_pred HHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc
Confidence 46899999999999999999995444445678999999999999999999999999999888888888777777766666
Q ss_pred eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (221)
Q Consensus 81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~ 160 (221)
.. .++++++.++|+|++|+|+|++|+++++++.+..||+|++|||++||.++|++++.++|++|+|.++++|||++||
T Consensus 207 ~~-~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP- 284 (336)
T KOG0069|consen 207 EF-VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP- 284 (336)
T ss_pred cc-cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-
Confidence 64 4899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCc
Q 027577 161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQ 207 (221)
Q Consensus 161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~ 207 (221)
+.++||+.++|+++|||+|+.|.+ .+++..+..|+.+++.|+++ +++
T Consensus 285 ~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~ 334 (336)
T KOG0069|consen 285 PVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPV 334 (336)
T ss_pred CCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence 889999999999999999999999 77788899999999999987 444
No 20
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-47 Score=333.80 Aligned_cols=199 Identities=20% Similarity=0.277 Sum_probs=175.8
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (221)
++||++.|++..+++.+++|.|.+.. ...+.+|.|++|||||+|.||+++|++|+++|++|++||+++..... ..
T Consensus 112 ~l~L~~~R~~~~~~~~~~~~~~~w~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~ 186 (330)
T PRK12480 112 SIALQLVRRFPDIERRVQAHDFTWQA-EIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FL 186 (330)
T ss_pred HHHHHHHHhHHHHHHHHHhCCccccc-ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hh
Confidence 58999999999999999999875432 12357899999999999999999999999999999999987532211 12
Q ss_pred eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (221)
Q Consensus 81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~ 160 (221)
....++++++++||+|++|+|.+++|.++++++.++.||+|++|||++||.+||+++|+++|++|+|.||+||||++||+
T Consensus 187 ~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~ 266 (330)
T PRK12480 187 TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAA 266 (330)
T ss_pred hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCc
Confidence 33458999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred C-------------CCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC
Q 027577 161 P-------------KDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF 204 (221)
Q Consensus 161 ~-------------~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~ 204 (221)
+ ..+|||++|||++|||+|++|.+ .++...+.+|+.+|++|++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~ 325 (330)
T PRK12480 267 YFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTC 325 (330)
T ss_pred cccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2 12479999999999999999999 77788899999999999874
No 21
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-45 Score=322.37 Aligned_cols=200 Identities=23% Similarity=0.334 Sum_probs=176.2
Q ss_pred CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHH-ccCCCeEEEEcCCCCChhHHHhcC
Q 027577 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRL-KPFNCNLLYHDRVKMDPQLEKETG 79 (221)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~~~~~g 79 (221)
++||++.|++...++.+++|.|.+.. ...+.+|.|+||||||+|.||+++|++| +++|++|++||++.... . ...
T Consensus 112 ~~~l~~~R~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~-~~~ 187 (332)
T PRK08605 112 TQAINLVRHFNQIQTKVREHDFRWEP-PILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--A-ATY 187 (332)
T ss_pred HHHHHHhcChHHHHHHHHhCCccccc-ccccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--H-Hhh
Confidence 47999999999999999999885432 1236789999999999999999999999 78999999999865322 1 123
Q ss_pred ceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577 80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (221)
Q Consensus 80 ~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep 159 (221)
+....++++++++||+|++|+|.++.|+++++.+.++.||+|++|||++||.++|+++|.++|++|+|.||++|||+.||
T Consensus 188 ~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep 267 (332)
T PRK08605 188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFER 267 (332)
T ss_pred ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCC
Confidence 44456899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --CCCCC-----------CCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC
Q 027577 160 --APKDH-----------PWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF 204 (221)
Q Consensus 160 --~~~~~-----------~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~ 204 (221)
+|.++ |||++||+++|||+|++|.| .++...+.+|+.+|++|++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~ 327 (332)
T PRK08605 268 PLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTGTT 327 (332)
T ss_pred CccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35554 49999999999999999999 77778899999999999865
No 22
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=3.9e-42 Score=303.82 Aligned_cols=165 Identities=27% Similarity=0.478 Sum_probs=145.4
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh----hh
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----TR 107 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~----t~ 107 (221)
.+|.||||||||+|+||+.+|+++++|||+|++||+..... .... ...++++++++||+|++|+|+|++ |.
T Consensus 112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~ 186 (378)
T PRK15438 112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDEG-DFRSLDELVQEADILTFHTPLFKDGPYKTL 186 (378)
T ss_pred CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----cccc-ccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence 47999999999999999999999999999999999743211 1112 245899999999999999999996 99
Q ss_pred hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCCCcCCHH--H
Q 027577 108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--L 185 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~ 185 (221)
++++++.|+.||+|+++||+|||++||++||+++|++|++.+|+||||++||. .+++|+..++ ++||||||+|.| .
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~ 264 (378)
T PRK15438 187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKA 264 (378)
T ss_pred cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999996 4667887665 999999999999 5
Q ss_pred HHHHHHHHHHHHHHcCCCC
Q 027577 186 RYAAGVKDMLDRYFKGEDF 204 (221)
Q Consensus 186 ~~~~~~~~~~~~~~~g~~~ 204 (221)
+....+.+|+.+|+ |.+.
T Consensus 265 ~~~~~~~~~l~~~~-~~~~ 282 (378)
T PRK15438 265 RGTTQVFEAYSKFI-GHEQ 282 (378)
T ss_pred HHHHHHHHHHHHHH-cCcc
Confidence 56677899999998 4443
No 23
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=7.7e-42 Score=302.66 Aligned_cols=166 Identities=31% Similarity=0.522 Sum_probs=148.8
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCCh----hh
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE----KT 106 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~----~t 106 (221)
+.+|.||||||||+|+||+.+|++++++|++|++||+..... . +.....++++++++||+|++|+|+|+ .|
T Consensus 111 g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~----~-~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T 185 (381)
T PRK00257 111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA----E-GDGDFVSLERILEECDVISLHTPLTKEGEHPT 185 (381)
T ss_pred CCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc----c-cCccccCHHHHHhhCCEEEEeCcCCCCccccc
Confidence 457999999999999999999999999999999999853211 1 11224589999999999999999999 59
Q ss_pred hhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCCCcCCHH--
Q 027577 107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID-- 184 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a~~t~~-- 184 (221)
+++++++.|+.||+|++|||+|||++||++||+++|++|++.+|+||||++||. .++|||.. |+++|||+||+|.|
T Consensus 186 ~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~ 263 (381)
T PRK00257 186 RHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGK 263 (381)
T ss_pred cccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999995 56789985 99999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 027577 185 LRYAAGVKDMLDRYFKGED 203 (221)
Q Consensus 185 ~~~~~~~~~~~~~~~~g~~ 203 (221)
.+....+.+|+.+|+.+.+
T Consensus 264 ~r~~~~~~~nl~~~~~~~~ 282 (381)
T PRK00257 264 ARGTAQIYQALCRFFGIPA 282 (381)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 6667778999999998864
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.88 E-value=4e-23 Score=178.04 Aligned_cols=204 Identities=25% Similarity=0.343 Sum_probs=164.9
Q ss_pred cHHHHHhCchHHHHHHHcCCCccCcc-----cCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027577 2 RILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76 (221)
Q Consensus 2 ~~l~~~R~~~~~~~~~~~g~w~~~~~-----~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 76 (221)
.||.++|+-....+.+++|.|..... ........|.+.|++|+|..|++++.++++||+.|+.||+.. ..-..+
T Consensus 139 hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~-~~g~~~ 217 (435)
T KOG0067|consen 139 HILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYL-IDGIDK 217 (435)
T ss_pred HHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchh-hhhhhh
Confidence 47889999989999999999863321 122346789999999999999999999999999999999853 333445
Q ss_pred hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577 77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (221)
Q Consensus 77 ~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~ 156 (221)
.+|...+.++++++.++|.+++|+.+++.++++++.-.++.|+.|+.++|++||.++|+++|.++|+.|++.+++
T Consensus 218 ~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa----- 292 (435)
T KOG0067|consen 218 SLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA----- 292 (435)
T ss_pred hcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-----
Confidence 667777778999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCC-CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCccccccC
Q 027577 157 PQPA-PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQNYIVKA 213 (221)
Q Consensus 157 ~ep~-~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n~v~~~ 213 (221)
|. -...||.+.||.++|||.+++++. .++.+.....+++-+.|+-. ...|-|+++
T Consensus 293 --~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnkE 351 (435)
T KOG0067|consen 293 --PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNKE 351 (435)
T ss_pred --CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhhh
Confidence 21 134578899999999999999877 34444444555555566533 344444443
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.77 E-value=3.1e-18 Score=154.70 Aligned_cols=121 Identities=19% Similarity=0.256 Sum_probs=102.5
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i 110 (221)
+..+.|++|+|+|+|.||+.+|++++++|++|+++++++.....+...|+... +++++++.+|+|++|+. +.+++
T Consensus 249 ~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atG----t~~iI 323 (476)
T PTZ00075 249 DVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV-TLEDVVETADIFVTATG----NKDII 323 (476)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCC----ccccc
Confidence 34799999999999999999999999999999999876544433444577654 79999999999999863 67899
Q ss_pred hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCC
Q 027577 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD 163 (221)
Q Consensus 111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~ 163 (221)
+.+.|+.||+|++|||++|+ |++.+.++|+.+. ++||++.||....
T Consensus 324 ~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~~ 369 (476)
T PTZ00075 324 TLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVDR 369 (476)
T ss_pred CHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCCe
Confidence 99999999999999999999 7888888888753 6899999987643
No 26
>PLN02494 adenosylhomocysteinase
Probab=99.71 E-value=4.1e-17 Score=147.15 Aligned_cols=121 Identities=18% Similarity=0.233 Sum_probs=105.3
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
..+.|++|+|+|+|.||+.+|++++.+|++|+++++++.....+...|+... +++++++.+|+|+.+. .+.++++
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tT----Gt~~vI~ 324 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTT----GNKDIIM 324 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECC----CCccchH
Confidence 3579999999999999999999999999999999987654444555676654 7899999999999754 3678899
Q ss_pred HHHHhcCCCCCEEEEcCC-CCccCHHHHHHH--HHhCCceEEEeeCCCCC
Q 027577 112 KDRIAKMKKGVLIVNNAR-GAIMDTQAVVDA--CSSGHIAGYSGDVWNPQ 158 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~sr-g~~vd~~al~~a--l~~g~i~~a~lDV~~~e 158 (221)
.+.|+.||+|++++|++| +..||+++|.++ ++.+.+. +.+|+|+.|
T Consensus 325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred HHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 999999999999999999 689999999998 8999998 999999874
No 27
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.67 E-value=4.3e-16 Score=139.26 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=104.4
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
..+.|++|+|+|+|.||+.+|+.++.+|++|+++++++.....+...|+... +++++++.+|+|+.++. +.++++
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG----~~~vI~ 265 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATG----NKDVIR 265 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCC----CHHHHH
Confidence 3589999999999999999999999999999999887654445555677554 77899999999988764 567889
Q ss_pred HHHHhcCCCCCEEEEcCCCCc-cCHHHHHHHHHhCCceEEEeeCCCC
Q 027577 112 KDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIAGYSGDVWNP 157 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~srg~~-vd~~al~~al~~g~i~~a~lDV~~~ 157 (221)
.+.+..||+|++++|++|+.+ ||.++|.+++.+....+..+|+|.-
T Consensus 266 ~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 266 GEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 899999999999999999998 9999999998887777789998873
No 28
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.67 E-value=1.1e-16 Score=126.85 Aligned_cols=115 Identities=15% Similarity=0.277 Sum_probs=94.9
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch-HHHH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD-KDRI 115 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~-~~~~ 115 (221)
++|||||+|.||+.+|++|...|++|.+||+++...+.+.+.++...+++.|+++++|+|++|+|..++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 589999999999999999999999999999987666666677888889999999999999999998777777653 2277
Q ss_pred hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (221)
Q Consensus 116 ~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD 153 (221)
..+++|.++||++...+-....+.+.+.+..+. ++|
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vd 117 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVD 117 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eee
Confidence 889999999999999999999999999988776 677
No 29
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.66 E-value=4.5e-16 Score=132.95 Aligned_cols=115 Identities=14% Similarity=0.204 Sum_probs=105.3
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KD 113 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~ 113 (221)
++||+||+|.||.++|++|...|+.|.+|||++.+ .+.....|.....+..++++++|+|++|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 48999999999999999999999999999998766 5666677888888999999999999999999999888874 57
Q ss_pred HHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (221)
Q Consensus 114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD 153 (221)
.++.+++|+++||+|..++.....+.+.++...+. .+|
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lD 118 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLD 118 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEe
Confidence 88999999999999999999999999999999988 777
No 30
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.65 E-value=5.9e-16 Score=133.70 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=81.3
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
..|.||||||||+|+||+++|++|+++|++|+++++...+.+.+...|+... ++++++++||+|++|+|+ +++.++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 4699999999999999999999999999999999876544455566677654 899999999999999996 67789999
Q ss_pred HHHHhcCCCCCEEEE
Q 027577 112 KDRIAKMKKGVLIVN 126 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn 126 (221)
.+.+..||+|++|+-
T Consensus 90 ~eil~~MK~GaiL~f 104 (335)
T PRK13403 90 AEVEENLREGQMLLF 104 (335)
T ss_pred HHHHhcCCCCCEEEE
Confidence 999999999998864
No 31
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.56 E-value=3.3e-14 Score=123.06 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=98.1
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCC---CCEEEEeCCCChhhhhcchHH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD 113 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~---aDvVv~~~p~~~~t~~~i~~~ 113 (221)
++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|+....++++++++ +|+|++|+|..+.++.+++ +
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-D 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-H
Confidence 47999999999999999999999999999998655555566777777889998876 6999999997767777764 5
Q ss_pred HHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (221)
Q Consensus 114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD 153 (221)
.+..+++|.++||+++..+.+..++.+.+.+..+. .+|
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 67788999999999999999999999999988776 677
No 32
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.55 E-value=2.6e-14 Score=123.54 Aligned_cols=116 Identities=13% Similarity=0.167 Sum_probs=99.2
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR 114 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~ 114 (221)
++|||||+|.||.++|+.|...|++|.+||+++...+.+.+.++....++.+++++||+|++|+|.....+.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 489999999999999999999999999999987665556566776677889999999999999997766666653 346
Q ss_pred HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 154 (221)
Q Consensus 115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV 154 (221)
+..++++.++||++++.+...+.+.+.+.+..+. ++|.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7778999999999999999999999999998877 5663
No 33
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.55 E-value=3e-14 Score=122.84 Aligned_cols=122 Identities=18% Similarity=0.243 Sum_probs=99.5
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR 114 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~ 114 (221)
++|||||+|.||..+|+.+...|++|.+||+++...+.+.+.++....++++++++||+|++|+|.+..++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 589999999999999999999999999999976555555566777677899999999999999998777776653 346
Q ss_pred HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC
Q 027577 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 158 (221)
Q Consensus 115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e 158 (221)
+..+++++++||+++..+...+++.+.+.+.++...-..|+..+
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~ 126 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGE 126 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCH
Confidence 77889999999999999988889999998877663333344433
No 34
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.54 E-value=2.2e-14 Score=123.48 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=96.6
Q ss_pred EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc-h-HHHH
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-D-KDRI 115 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i-~-~~~~ 115 (221)
+|||||+|.||..+|+.|...|++|.+||+++...+.+...|.....+.++++++||+|++|+|.++..+.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 5899999999999999999999999999998755555666677666788999999999999999877776664 2 3466
Q ss_pred hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (221)
Q Consensus 116 ~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD 153 (221)
..+++++++||+++..+.+.+++.+.+++..+. .+|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~ 116 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD 116 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence 788999999999999998889999999987766 455
No 35
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.52 E-value=1.1e-13 Score=119.94 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=98.6
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCC---CCEEEEeCCCChhhhhcchHH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD 113 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~---aDvVv~~~p~~~~t~~~i~~~ 113 (221)
++|||||+|.||+.+|+.|...|++|.+||+++...+.+.+.|+....+++++++. +|+|++++|..+.+..++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 48999999999999999999999999999998755555666788777789888875 699999999776776666 35
Q ss_pred HHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 154 (221)
Q Consensus 114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV 154 (221)
....++++.++||++++.......+.+.+++.++. ++|.
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 67789999999999999999999999999998887 5674
No 36
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.48 E-value=2.2e-13 Score=107.00 Aligned_cols=104 Identities=21% Similarity=0.355 Sum_probs=76.3
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
..+.||++.|+|||.+|+.+|+.|+++|.+|++++..|...-.+...|++.. +++++++++|+++.++. ...++.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCC----CccccC
Confidence 4689999999999999999999999999999999987654445556688765 89999999999998876 356788
Q ss_pred HHHHhcCCCCCEEEEcCCCCc-cCHHHHHH
Q 027577 112 KDRIAKMKKGVLIVNNARGAI-MDTQAVVD 140 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~srg~~-vd~~al~~ 140 (221)
.+.|..||+|+++.|++.-.. +|.+.|.+
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 999999999999999987654 56555543
No 37
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.46 E-value=3.2e-13 Score=123.70 Aligned_cols=122 Identities=12% Similarity=0.079 Sum_probs=101.5
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc----Cce---ecCCHHhhcCC---CCEEEEeCCCChhh
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAK---FEEDLDTMLPK---CDIVVVNTPLTEKT 106 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g~~---~~~~l~ell~~---aDvVv~~~p~~~~t 106 (221)
.+|||||+|.||+.+|++|...|++|.+|||++...+.+.+. |.. ...+++++++. +|+|++|+|..+.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 369999999999999999999999999999986554443331 432 45688898876 99999999999888
Q ss_pred hhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577 107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep 159 (221)
+.++ ...+..+++|.++||++....-+...+.+.+++..+.....=|...++
T Consensus 87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 8887 467888999999999999999999999999999999855555665544
No 38
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.45 E-value=3.5e-13 Score=116.09 Aligned_cols=96 Identities=21% Similarity=0.339 Sum_probs=79.1
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee--cCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~--~~~l~ell~~aDvVv~~~p~~~~t~~ 108 (221)
+.+++|++++|+|+|.||+.+|+.|+.+|++|.+++|++.....+...+... ..+++++++++|+|++|+|. .
T Consensus 146 ~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~-----~ 220 (287)
T TIGR02853 146 DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA-----L 220 (287)
T ss_pred CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh-----H
Confidence 3579999999999999999999999999999999999764433344445443 24677889999999999994 3
Q ss_pred cchHHHHhcCCCCCEEEEcCCCC
Q 027577 109 MFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 109 ~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+++++.++.|++++++||++...
T Consensus 221 ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 221 VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred HhCHHHHhcCCCCeEEEEeCcCC
Confidence 67788899999999999998743
No 39
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.45 E-value=4.6e-13 Score=120.49 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=96.7
Q ss_pred hCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHH
Q 027577 8 RNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87 (221)
Q Consensus 8 R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ 87 (221)
|.++.......++.|+.-. ......+.|++|+|+|+|.||+.+|+.++.+|++|+++|+++.....+...|+.. .+++
T Consensus 185 K~~~dn~~gt~~s~~~ai~-rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~ 262 (425)
T PRK05476 185 KSKFDNRYGTGESLLDGIK-RATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTME 262 (425)
T ss_pred CccccccHHHHhhhHHHHH-HhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHH
Confidence 3333333445566664211 0113458999999999999999999999999999999998765544445557664 4789
Q ss_pred hhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCc-cCHHHHHH
Q 027577 88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVD 140 (221)
Q Consensus 88 ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~-vd~~al~~ 140 (221)
++++.+|+|+.++. +.++++.+.+..||+|++++|+++... +|.++|.+
T Consensus 263 eal~~aDVVI~aTG----~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 263 EAAELGDIFVTATG----NKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHhCCCEEEECCC----CHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 99999999988764 456788899999999999999999876 77777754
No 40
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.44 E-value=7.3e-13 Score=114.41 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=96.2
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR 114 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~ 114 (221)
++|||||+|+||..+|+.|...|++|.+||+++. .+.+...|+....+..+++++||+|++|+|..+..+.++. ...
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 4799999999999999999999999999998763 3445556777777899999999999999998777766653 235
Q ss_pred HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 154 (221)
Q Consensus 115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV 154 (221)
+..+++|.++|+++...+-....+.+.+.+..+. ++|.
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 6678999999999999999999999999888776 6663
No 41
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.42 E-value=5.2e-13 Score=113.34 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=104.8
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch-
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD- 111 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~- 111 (221)
.-+.++||+||+|.||..++..|...|++|++|||+....+.+.+.|....+++.|+.+.||+||.++|.....+.++.
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g 111 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG 111 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC
Confidence 3468899999999999999999999999999999988777788888999889999999999999999998888777763
Q ss_pred -HHHHhcCCCCCEE-EEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577 112 -KDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (221)
Q Consensus 112 -~~~~~~mk~ga~l-In~srg~~vd~~al~~al~~g~i~~a~lD 153 (221)
...++.++++... |+.+.-.+.-...|.++++..... ++|
T Consensus 112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD 153 (327)
T KOG0409|consen 112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD 153 (327)
T ss_pred CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence 3467777788777 999999998899999999998777 777
No 42
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.42 E-value=1.9e-12 Score=112.07 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=93.4
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhh---cCCCCEEEEeCCCChhhhhcchHH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM---LPKCDIVVVNTPLTEKTRGMFDKD 113 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~el---l~~aDvVv~~~p~~~~t~~~i~~~ 113 (221)
++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.+.....+++++ ++++|+|++++|.. .+..++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 47999999999999999999999999999998765555555666555566654 45689999999966 666666 45
Q ss_pred HHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 154 (221)
Q Consensus 114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV 154 (221)
....+++|.++||++.+...+...+.+.+++..+. .+|.
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda 117 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC 117 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence 67788999999999999999999999999888776 5664
No 43
>PLN02858 fructose-bisphosphate aldolase
Probab=99.39 E-value=2e-12 Score=130.69 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=104.2
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc--hH
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DK 112 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i--~~ 112 (221)
+.++||+||+|.||..||++|...|++|.+||+++...+.+.+.|+...+++.+++++||+|++|+|..+..+.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 4678999999999999999999999999999998766666777788888899999999999999999888888776 34
Q ss_pred HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCC--ceEEEeeC
Q 027577 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH--IAGYSGDV 154 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~--i~~a~lDV 154 (221)
..+..+++|.++|++|...+-....+.+.+.+.. +. ++|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence 6788899999999999999999999999998877 55 6774
No 44
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.38 E-value=1.8e-12 Score=113.12 Aligned_cols=96 Identities=16% Similarity=0.240 Sum_probs=78.8
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i 110 (221)
..|+|++|||||+|+||+++|+.|+.+|++|++++++. ...+.+...|+... +.++++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 46899999999999999999999999999999887653 33444556677655 899999999999999996554 6666
Q ss_pred hHHHHhcCCCCCEEEEcCCC
Q 027577 111 DKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 111 ~~~~~~~mk~ga~lIn~srg 130 (221)
.++.+..|++|++| ..+.|
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC
Confidence 67788899999988 56666
No 45
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.38 E-value=2.3e-12 Score=117.74 Aligned_cols=121 Identities=14% Similarity=0.179 Sum_probs=99.0
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc----C--ceecCCHHhhcC---CCCEEEEeCCCChhhh
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----G--AKFEEDLDTMLP---KCDIVVVNTPLTEKTR 107 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g--~~~~~~l~ell~---~aDvVv~~~p~~~~t~ 107 (221)
.+|||||+|.||.++|++|...|++|.+|||++...+.+.+. | +....+++++++ ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 479999999999999999999999999999987554433322 4 345678999886 5899999999888888
Q ss_pred hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC
Q 027577 108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 158 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e 158 (221)
.++ ++.+..+++|.+|||++.+...+...+.+.+.+..+.....=|...+
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~ 131 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGE 131 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCH
Confidence 877 45778899999999999999999999999999999884433345443
No 46
>PLN02712 arogenate dehydrogenase
Probab=99.37 E-value=2.9e-12 Score=121.65 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=90.6
Q ss_pred cCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC-CCCEEEEeCCCChhh
Q 027577 28 AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKT 106 (221)
Q Consensus 28 ~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDvVv~~~p~~~~t 106 (221)
...+.++.+++|||||+|.||+.+|+.++.+|++|++||++.. .+.+.+.|+....++++++. ++|+|++|+| ...+
T Consensus 361 ~~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~-~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~ 438 (667)
T PLN02712 361 SGCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY-SDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILST 438 (667)
T ss_pred hhccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH-HHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHH
Confidence 3456788999999999999999999999999999999998743 24455677776678888875 5999999999 4566
Q ss_pred hhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
..++.+-....|++|++++|++.++-...+.+.+.+..
T Consensus 439 ~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 439 EKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 66676544446899999999999885555555555544
No 47
>PLN02256 arogenate dehydrogenase
Probab=99.37 E-value=1.1e-11 Score=107.60 Aligned_cols=109 Identities=18% Similarity=0.292 Sum_probs=84.1
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc-CCCCEEEEeCCCChhhhhcchH
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
-.+++|+|||+|.||+++|+.++..|++|++||++. ..+.+...|+....+.++++ .++|+|++|+|. ..+..++.+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~-~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~ 111 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD-YSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRS 111 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc-HHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHh
Confidence 357899999999999999999999999999999875 33445566776667888876 479999999994 345555544
Q ss_pred HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
-....++++++|+|++..+-+..+++.+.+..
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 32566899999999999765556666666544
No 48
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.36 E-value=7.7e-12 Score=112.34 Aligned_cols=105 Identities=17% Similarity=0.287 Sum_probs=89.6
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i 110 (221)
+..+.|++|+|+|+|.||+.+++.++.+|++|+++|+++...+.+...|+... ++++.++.+|+|+.++. +..++
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG----~~~~i 271 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTG----NKDII 271 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCC----CHHHH
Confidence 34689999999999999999999999999999999988766777778888654 67888899999998765 34568
Q ss_pred hHHHHhcCCCCCEEEEcCCCCc-cCHHHHHH
Q 027577 111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVVD 140 (221)
Q Consensus 111 ~~~~~~~mk~ga~lIn~srg~~-vd~~al~~ 140 (221)
+...+..||+|++++|+++..+ +|..+|..
T Consensus 272 ~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 272 TGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 8888999999999999999876 77777654
No 49
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.36 E-value=3.3e-12 Score=109.95 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=93.2
Q ss_pred EEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHHHhcC
Q 027577 41 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDRIAKM 118 (221)
Q Consensus 41 IIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~~~~m 118 (221)
|||+|.||.++|+.|...|++|.+||+++...+.+.+.|+....++.++++++|+|++|+|.....+.++. ......+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999987656666667777777899999999999999997666666652 4566788
Q ss_pred CCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (221)
Q Consensus 119 k~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD 153 (221)
+++.++||++...+-....+.+.+++..+. ++|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 999999999988877778888888877776 677
No 50
>PLN02858 fructose-bisphosphate aldolase
Probab=99.32 E-value=7.9e-12 Score=126.47 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=100.3
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc--hHH
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DKD 113 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i--~~~ 113 (221)
.++|||||+|.||..+|++|...|++|.+||+++...+.+...|.....++.+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 478999999999999999999999999999998755555566677667789999999999999999888888776 345
Q ss_pred HHhcCCCCCEEEEcCCCCccCHHHHHHHHHh--CCceEEEeeC
Q 027577 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS--GHIAGYSGDV 154 (221)
Q Consensus 114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~--g~i~~a~lDV 154 (221)
.+..+++|.++||+|...+-....+.+.+.+ ..+. ++|.
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA 444 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA 444 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence 7788999999999999999999999999988 5555 6663
No 51
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.32 E-value=9e-12 Score=113.87 Aligned_cols=119 Identities=10% Similarity=0.107 Sum_probs=95.0
Q ss_pred EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc-----CceecCCHHhhc---CCCCEEEEeCCCChhhhhc
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTML---PKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~~~~l~ell---~~aDvVv~~~p~~~~t~~~ 109 (221)
.|||||+|.||.++|++|...|++|.+|||++...+.+.+. ++....++++++ +++|+|++++|..+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 38999999999999999999999999999987555544433 244556777766 4699999999987777777
Q ss_pred chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ 157 (221)
+ .+.+..+++|.+|||++....-+...+.+.+.+..+.....=|...
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 7 4577889999999999999999999999999988887333334443
No 52
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.29 E-value=1.7e-11 Score=106.11 Aligned_cols=94 Identities=26% Similarity=0.323 Sum_probs=79.4
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec--CCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
..+.|++++|||+|.+|+.+++.|+.+|++|.++|+++...+.+...|+... .++.+.++++|+|+.++| ..+
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p-----~~~ 222 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIP-----ALV 222 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCC-----hhh
Confidence 4678999999999999999999999999999999998655555556676543 366788899999999998 246
Q ss_pred chHHHHhcCCCCCEEEEcCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg 130 (221)
++++.++.|++++++||++..
T Consensus 223 i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 223 LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred hhHHHHHcCCCCcEEEEEccC
Confidence 788899999999999999853
No 53
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.28 E-value=9.5e-12 Score=97.49 Aligned_cols=91 Identities=22% Similarity=0.344 Sum_probs=68.3
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC-ChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
|++|+|+|||+|+.|++.|..|+..|++|++-.+... +.+.+++.|++.. +.+|+++++|+|++.+| ++....++.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~P-D~~q~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLP-DEVQPEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S--HHHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCC-hHHHHHHHHH
Confidence 5799999999999999999999999999998887654 5567778888765 89999999999999999 3333455667
Q ss_pred HHHhcCCCCCEEEE
Q 027577 113 DRIAKMKKGVLIVN 126 (221)
Q Consensus 113 ~~~~~mk~ga~lIn 126 (221)
+....|++|+.++=
T Consensus 80 ~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 80 EIAPNLKPGATLVF 93 (165)
T ss_dssp HHHHHS-TT-EEEE
T ss_pred HHHhhCCCCCEEEe
Confidence 88889999997764
No 54
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.28 E-value=5.5e-11 Score=103.24 Aligned_cols=141 Identities=13% Similarity=0.141 Sum_probs=91.3
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhcCc--eecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~--~~~~~l~ell~~aDvVv~~~p~~~~t~~~i 110 (221)
..++|+|||+|.||..+|+.++..|. +|++||+++...+.+.+.|+ ....++++.++++|+|++|+|.. ....+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v- 82 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAV- 82 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHH-
Confidence 34789999999999999999998885 89999997655555555554 23457788899999999999942 22222
Q ss_pred hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC---CC---CCCCCCCCCCCCCeEECCCCCc
Q 027577 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN---PQ---PAPKDHPWRYMPNQAMTPHVSG 180 (221)
Q Consensus 111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~---~e---p~~~~~~l~~~~n~~~tPH~a~ 180 (221)
.++....+++++++++++....-..+++.+.+.. .+. ++.... .| |.....+|+.-..+++||+-++
T Consensus 83 ~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 83 AAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred HHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence 3445567899999999876542222233333322 222 333221 11 1112234555567889997664
No 55
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.24 E-value=1.3e-11 Score=88.84 Aligned_cols=90 Identities=21% Similarity=0.346 Sum_probs=67.3
Q ss_pred EEEEEccCHHHHHHHHHHccCC---CeEEEE-cCCCCChh-HHHhcCceecC-CHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFN---CNLLYH-DRVKMDPQ-LEKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G---~~V~~~-d~~~~~~~-~~~~~g~~~~~-~l~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
||||||+|+||.++++.+...| .+|.++ +|++.... ..++.++.... +..++++++|+|++|+| |....-+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~--p~~~~~v~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK--PQQLPEVL 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S---GGGHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC--HHHHHHHH
Confidence 7999999999999999999999 888844 88764433 34556666555 78999999999999999 43333343
Q ss_pred HHHHhcCCCCCEEEEcCCC
Q 027577 112 KDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~srg 130 (221)
.+. ....++.++|++..|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 444 667789999998765
No 56
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.24 E-value=1.6e-11 Score=110.19 Aligned_cols=102 Identities=23% Similarity=0.272 Sum_probs=80.9
Q ss_pred CCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCC------CCChhHHHhcCceecCCHHhhcCCCC
Q 027577 21 EWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV------KMDPQLEKETGAKFEEDLDTMLPKCD 94 (221)
Q Consensus 21 ~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~------~~~~~~~~~~g~~~~~~l~ell~~aD 94 (221)
-|.+.+++.....|+||||+|||+|++|++.|..|+..|++|.+--|. ..+.+.+.+.|+.. .++++++++||
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~AD 99 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQAD 99 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCC
Confidence 487766544456799999999999999999999999999998843332 23444444567754 58999999999
Q ss_pred EEEEeCCCChhhhhcchHHHHhcCCCCCEEE
Q 027577 95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV 125 (221)
Q Consensus 95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI 125 (221)
+|++.+|++ . .+.+.++.+..||+|+.|.
T Consensus 100 vVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 100 LVINLTPDK-Q-HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred EEEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence 999999987 3 6667799999999998875
No 57
>PLN02712 arogenate dehydrogenase
Probab=99.24 E-value=1.7e-10 Score=109.66 Aligned_cols=109 Identities=17% Similarity=0.272 Sum_probs=81.5
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc-CCCCEEEEeCCCChhhhhcchH
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
-+.++|||||+|.||+.+|+.|+.+|++|.+||++. ..+.+.+.|+....++++++ +++|+|++|+|. ..+..++..
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~-~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD-HSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 345799999999999999999999999999999864 33456667877777888866 569999999994 456666655
Q ss_pred HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
-.+..++++++|+|++.-+..-.+++.+.+..
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~ 159 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE 159 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence 43466899999999975543222344444433
No 58
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.24 E-value=4.8e-11 Score=103.99 Aligned_cols=97 Identities=21% Similarity=0.318 Sum_probs=74.0
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCC-CCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV-KMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
|+||+|||||+|+||+++|+.|+.+|++|+++++. ....+.+.+.|+... +..+++++||+|++++|... ....+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~-~~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEV-QHEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHh-HHHHHHH
Confidence 57999999999999999999999999998776543 333344446677654 68889999999999999432 3344556
Q ss_pred HHHhcCCCCCEEEEcCCCCcc
Q 027577 113 DRIAKMKKGVLIVNNARGAIM 133 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~srg~~v 133 (221)
+....++++. +|.++.|--+
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH
Confidence 6777788885 8888888543
No 59
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.23 E-value=2.1e-10 Score=104.35 Aligned_cols=134 Identities=19% Similarity=0.291 Sum_probs=96.2
Q ss_pred CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577 37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (221)
Q Consensus 37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~ 114 (221)
++|+||| +|.||+++|+.|+..|++|.++++++... +.+.+.|+....+.++.++++|+|++|+|. ..+..++ .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence 5899997 89999999999999999999999875432 445556776666888899999999999994 3344444 455
Q ss_pred HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCC-CCCCCCCCCCeEECCCC
Q 027577 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHV 178 (221)
Q Consensus 115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~-~~~~l~~~~n~~~tPH~ 178 (221)
...+++++++++++.......+++.+.+..+ .. .+.. -|.. +..+++.-..+++||+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCC
Confidence 6778999999999986655556666555432 22 2332 2321 12356666778999975
No 60
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.23 E-value=1.6e-10 Score=99.05 Aligned_cols=138 Identities=16% Similarity=0.150 Sum_probs=86.4
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce-ecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~ 115 (221)
++|+|||+|.||.++|+.|+..|++|.+||+++...+.+...|.. ...+..+.++++|+|++|+|... ...+ -++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~-~~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPP-SEQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHH-HHHHH
Confidence 479999999999999999999999999999876544555555532 22223356789999999999332 2233 34566
Q ss_pred hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee-CCCCCCCC---CCCCCCCCCCeEECCCCCc
Q 027577 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQPAP---KDHPWRYMPNQAMTPHVSG 180 (221)
Q Consensus 116 ~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD-V~~~ep~~---~~~~l~~~~n~~~tPH~a~ 180 (221)
..+++++++++++.-.. ...+++..........- ++..|... ...-|+.-..+++||+-.+
T Consensus 79 ~~l~~~~ii~d~~Svk~----~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~ 143 (279)
T PRK07417 79 PALPPEAIVTDVGSVKA----PIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT 143 (279)
T ss_pred HhCCCCcEEEeCcchHH----HHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC
Confidence 77889999999887542 22333332211211111 11111100 1112555677889997764
No 61
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.20 E-value=1.4e-10 Score=98.41 Aligned_cols=103 Identities=14% Similarity=0.244 Sum_probs=80.5
Q ss_pred CEEEEEccCHHHHHHHHHHccCCC----eEEEE-cCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYH-DRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
+||||||+|+||.++++.|...|+ +|++| ++++...+.+.+.|+....+..++++++|+|++|+| ......++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 589999999999999999998887 88898 887655555566788777788899999999999997 444555553
Q ss_pred HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~ 143 (221)
+....++++.++|++..| +..+.+.+.+.
T Consensus 80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~ 108 (266)
T PLN02688 80 -ELRPLLSKDKLLVSVAAG--ITLADLQEWAG 108 (266)
T ss_pred -HHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence 455667889999988766 46666665554
No 62
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.19 E-value=1.2e-10 Score=99.74 Aligned_cols=104 Identities=15% Similarity=0.308 Sum_probs=80.0
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCC----eEEEEcCCCCChhHHH-hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~-~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i 110 (221)
.++|||||+|+||.++++.|...|+ +|+++||+....+.+. +.|+....+..+++++||+|++|+|. .....++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH
Confidence 3589999999999999999987774 6999998765444443 36777667888899999999999993 4444444
Q ss_pred hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (221)
Q Consensus 111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~ 143 (221)
++....+++++++|++.-| ++.+.|.+.+.
T Consensus 81 -~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 -NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred -HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 4455557888999999988 56677777664
No 63
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.17 E-value=5.1e-10 Score=95.75 Aligned_cols=100 Identities=16% Similarity=0.289 Sum_probs=71.2
Q ss_pred CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhcCce-ecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~-~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~ 113 (221)
++|+|||+|.||.++|+.|+..|+ +|++||+++...+.+.+.|+. ...+.+++. ++|+|++|+|.. ....++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHH-HH
Confidence 479999999999999999988885 799999876544555556653 344677765 499999999943 333333 34
Q ss_pred HHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
... ++++++|++++.- ...+.+.+..
T Consensus 78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275)
T PRK08507 78 LLD-IKENTTIIDLGST----KAKIIESVPK 103 (275)
T ss_pred Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence 555 8899999997552 3445555543
No 64
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=2.4e-10 Score=94.42 Aligned_cols=118 Identities=21% Similarity=0.260 Sum_probs=102.4
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc---CCCCEEEEeCCCChhhhhcchHH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML---PKCDIVVVNTPLTEKTRGMFDKD 113 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell---~~aDvVv~~~p~~~~t~~~i~~~ 113 (221)
++||.||+|+||..+.+++...|++|++||+++...+.+...++...+++++++ ....+|.+++|....|..+++ +
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence 579999999999999999999999999999998777777788887777888765 457899999998766766664 5
Q ss_pred HHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCC
Q 027577 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157 (221)
Q Consensus 114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ 157 (221)
+-..|.+|-++|+-+...--|.....+.|++..|. .+||=..
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GTS 121 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGTS 121 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccCC
Confidence 66788999999999999999999999999999998 8998554
No 65
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.14 E-value=1.5e-09 Score=93.48 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=82.9
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------c-----------------CceecCCHHhhcCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------T-----------------GAKFEEDLDTMLPK 92 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------~-----------------g~~~~~~l~ell~~ 92 (221)
++|+|||+|.||..+|..+...|++|++||+++...+.+.+ . ++....++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 58999999999999999999999999999997643332210 0 13345678889999
Q ss_pred CCEEEEeCCCChhhhhcchHHHHhcCCCCCEE-EEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (221)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~l-In~srg~~vd~~al~~al~~g~i~~a~lDV~ 155 (221)
||+|+.|+|...+.+..+-.+..+.+++++++ +|+|... ...+.+.++. .-+..++..+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~---~~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS---PTEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEEecC
Confidence 99999999977666655555566778999877 7887744 4556665543 2233466655
No 66
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.14 E-value=6.1e-10 Score=98.86 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=88.6
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--Cce--ecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--g~~--~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
++|+|||+|.||.++|+.|+..|++|.+|++++......... ++. ...++++++++||+|++|+|. ..+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHH-
Confidence 479999999999999999999999988888766444333332 221 234678889999999999994 34444443
Q ss_pred HHHh-cCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCC---------CCCCCCCCCeEECCCCCc
Q 027577 113 DRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK---------DHPWRYMPNQAMTPHVSG 180 (221)
Q Consensus 113 ~~~~-~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~---------~~~l~~~~n~~~tPH~a~ 180 (221)
+... .++++++|++++.-+.-..+++.+.+. .... ++... |.+. ...|+.-...++||+-..
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCCC
Confidence 3333 478999999998766433333433322 2222 34432 3221 223556566889997654
No 67
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.12 E-value=2.7e-09 Score=91.81 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=90.8
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------------------------cCceecCCHHhhcC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------------TGAKFEEDLDTMLP 91 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------------------------~g~~~~~~l~ell~ 91 (221)
++|+|||.|.||..+|..+...|++|.+||+++...+...+ .++....+++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 58999999999999999999999999999987543221110 12334578888999
Q ss_pred CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCC
Q 027577 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN 171 (221)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n 171 (221)
.||+|+.++|...+.+..+-++....++++++|++.+.. +....+.+.+.... +..++-. .+|.+..+.
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf--------~~p~~~~~l 152 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF--------ANEIWKNNT 152 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC--------CCCCCcCCe
Confidence 999999999966555555555666778889988544333 34456666654322 3344432 223445577
Q ss_pred eEECCCCCc
Q 027577 172 QAMTPHVSG 180 (221)
Q Consensus 172 ~~~tPH~a~ 180 (221)
+.+.|+-..
T Consensus 153 vevv~~~~t 161 (287)
T PRK08293 153 AEIMGHPGT 161 (287)
T ss_pred EEEeCCCCC
Confidence 888887664
No 68
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.11 E-value=3.9e-10 Score=98.00 Aligned_cols=82 Identities=20% Similarity=0.290 Sum_probs=67.3
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~ 114 (221)
.+++|+|||+|.||+++|+.|...|++|.+|+|+.. .+++++++++|+|++++|. +....++.. .
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l 67 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-V 67 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-H
Confidence 468999999999999999999999999999998642 3678888999999999995 466666533 3
Q ss_pred Hh-cCCCCCEEEEcCCCC
Q 027577 115 IA-KMKKGVLIVNNARGA 131 (221)
Q Consensus 115 ~~-~mk~ga~lIn~srg~ 131 (221)
.. .+++++++|++++|-
T Consensus 68 ~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 68 QALNLPPETIIVTATKGL 85 (308)
T ss_pred HHhcCCCCcEEEEeCCcc
Confidence 23 478899999998853
No 69
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.11 E-value=1.3e-09 Score=94.07 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=77.5
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhc------------C-ceecCCHHhhcCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKET------------G-AKFEEDLDTMLPK 92 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~------------g-~~~~~~l~ell~~ 92 (221)
++|+|||+|.||..+|+.+...|++|++||+++...+. +.+. + ....++. +.+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence 68999999999999999999999999999987643221 1111 1 2233344 56899
Q ss_pred CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEE-EcCCCCccCHHHHHHHHHh
Q 027577 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI-n~srg~~vd~~al~~al~~ 144 (221)
||+|+.|+|..++.+..+..+....++++++|+ |+|.- ....+.+.+..
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~ 133 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR 133 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence 999999999888888877777777889999887 66554 45556666543
No 70
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.10 E-value=1.1e-09 Score=93.80 Aligned_cols=138 Identities=20% Similarity=0.173 Sum_probs=91.2
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcC--CCCChhHHHhcCcee--cCCH-HhhcCCCCEEEEeCCCChhhhhcc
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR--VKMDPQLEKETGAKF--EEDL-DTMLPKCDIVVVNTPLTEKTRGMF 110 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~--~~~~~~~~~~~g~~~--~~~l-~ell~~aDvVv~~~p~~~~t~~~i 110 (221)
-++|+|+|+|.||+++|+.++..|+.+.++++ +....+.+.+.|+.. ..+. .+.+..+|+|++++|- ..+..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence 47899999999999999999999998755554 333334444456532 1232 6777889999999993 3344444
Q ss_pred hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCC---CCCCCCCCCCeEECCCCCcC
Q 027577 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---KDHPWRYMPNQAMTPHVSGT 181 (221)
Q Consensus 111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~---~~~~l~~~~n~~~tPH~a~~ 181 (221)
++....+++|++|++++.-.---.+++.+.+.+.. ...+ .-|.. ...+++....+++||.-...
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg-----~HPM~G~~~~~~lf~~~~~vltp~~~~~ 148 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVG-----GHPMFGPEADAGLFENAVVVLTPSEGTE 148 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEe-----cCCCCCCcccccccCCCEEEEcCCCCCC
Confidence 34455799999999998866555555555554332 2222 22332 24467776779999976543
No 71
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.09 E-value=1.9e-09 Score=97.74 Aligned_cols=137 Identities=10% Similarity=0.073 Sum_probs=92.4
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce----------------ecCCHHhhcCCCCEEEEe
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK----------------FEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~----------------~~~~l~ell~~aDvVv~~ 99 (221)
.++|||||+|.||..+|..+.. |++|++||+++...+.+. .|.. ..++..+.+++||++++|
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~ 83 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT 83 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence 4799999999999999999877 699999999875554443 2221 222334568999999999
Q ss_pred CCCC------hhhhhcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC--Cce-E-EEeeCCCCCCCCCCC---
Q 027577 100 TPLT------EKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIA-G-YSGDVWNPQPAPKDH--- 164 (221)
Q Consensus 100 ~p~~------~~t~~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g--~i~-~-a~lDV~~~ep~~~~~--- 164 (221)
+|.. ++...+. .....+.+++|.++|+.|.-.+-..+.+.+.+... ++. + ...=+|.+||.....
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~ 163 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKH 163 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccc
Confidence 9944 2334444 34567789999999999999998888765544332 222 0 111246678776543
Q ss_pred CCCCCCCeEE
Q 027577 165 PWRYMPNQAM 174 (221)
Q Consensus 165 ~l~~~~n~~~ 174 (221)
.+.+.|.++.
T Consensus 164 ~~~~~~riv~ 173 (425)
T PRK15182 164 RLTNIKKITS 173 (425)
T ss_pred cccCCCeEEE
Confidence 3455555543
No 72
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.07 E-value=8.4e-10 Score=94.63 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=77.5
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCC----CeEEEEcCCCC-ChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKM-DPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G----~~V~~~d~~~~-~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~ 108 (221)
++++|+|||+|+||.++++.|...| .+|++++|+.. ..+. ....|+....+..+++++||+|++++|. .....
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHH
Confidence 4679999999999999999998877 67999998642 2222 2345777667888899999999999993 33333
Q ss_pred cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577 109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (221)
Q Consensus 109 ~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~ 143 (221)
++ .+....++++.+||++..|- ..+.+.+.+.
T Consensus 81 vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~ 112 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ 112 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 33 34555678899999987663 5566666554
No 73
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.07 E-value=2.1e-09 Score=88.03 Aligned_cols=109 Identities=22% Similarity=0.264 Sum_probs=84.5
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhcCceecCCHHhhcC-CCCEEEEeCCCChhhhhc
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~~~l~ell~-~aDvVv~~~p~~~~t~~~ 109 (221)
.+++||+++|+|+|+||+.+|+.|..+|++|+++|+++...+.. ...+...+ +.++++. +||+++.|.. .++
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~~ 97 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GGV 97 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----ccc
Confidence 46899999999999999999999999999999999875433332 23366655 4456664 7999997765 457
Q ss_pred chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
++.+.++.|+ ..+|+..+-+.+.| ..-.+.|++..+.
T Consensus 98 I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 98 INDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred cCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 8888888887 46888888887766 5667778888777
No 74
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=99.07 E-value=6.4e-10 Score=96.63 Aligned_cols=111 Identities=19% Similarity=0.325 Sum_probs=91.2
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
-+.||++.|.|+|..|+.+|.+++..|++|++....+...-.+...|++.. ..+++.+.+|+++.++- +++++..
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccC----CcCccCH
Confidence 478999999999999999999999999999999877655445555677765 79999999999999886 6788999
Q ss_pred HHHhcCCCCCEEEEcCCCCc-cCHHHHHHH-HHhCCce
Q 027577 113 DRIAKMKKGVLIVNNARGAI-MDTQAVVDA-CSSGHIA 148 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~srg~~-vd~~al~~a-l~~g~i~ 148 (221)
+.+..||+|+++-|++.-.+ +|.+.|.+. ++...++
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr 318 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR 318 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence 99999999999999997666 666666543 3334444
No 75
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.06 E-value=2.2e-09 Score=93.85 Aligned_cols=116 Identities=13% Similarity=0.166 Sum_probs=86.2
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------hc---------CceecCCHHhhcCCCCEE
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET---------GAKFEEDLDTMLPKCDIV 96 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~---------g~~~~~~l~ell~~aDvV 96 (221)
++|||||.|.||..+|..+...|++|.+||+++...+... +. .+....++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 6899999999999999999999999999999754322111 01 124557889999999999
Q ss_pred EEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577 97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (221)
Q Consensus 97 v~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~ 155 (221)
+-++|.+.+.+..+-++.-+.++++++|-..+. -+...++.+.++. .=+..++-.|
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS--~l~~s~la~~~~~-p~R~~g~Hff 143 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAIIASSTS--GLLPTDFYARATH-PERCVVGHPF 143 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEEEECCC--ccCHHHHHHhcCC-cccEEEEecC
Confidence 999998888888888888888999985544333 3467777777753 2233455433
No 76
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.06 E-value=1.5e-09 Score=95.14 Aligned_cols=103 Identities=18% Similarity=0.176 Sum_probs=77.7
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--------C------ceecCCHHhhcCCCCEEEEeCC
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------G------AKFEEDLDTMLPKCDIVVVNTP 101 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------g------~~~~~~l~ell~~aDvVv~~~p 101 (221)
.++|+|||+|.||..+|..|...|++|.+|+|++...+..... + +...++++++++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 4689999999999999999999999999999975433333322 2 3345688888899999999999
Q ss_pred CChhhhhcchHHHHhcCCCCCEEEEcCCC-CccC--HHHHHHHHHh
Q 027577 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARG-AIMD--TQAVVDACSS 144 (221)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg-~~vd--~~al~~al~~ 144 (221)
.. .+ ++.++.++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 44 22 4566778999999999997 4332 4456666654
No 77
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.03 E-value=2.4e-09 Score=96.84 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=77.7
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-cCCHHhh---------------cCCCCEEEEeC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTM---------------LPKCDIVVVNT 100 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~~l~el---------------l~~aDvVv~~~ 100 (221)
++|+|||+|.||..+|..|...|++|++||+++...+....-.... ...++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 6899999999999999999999999999999765444322111110 1122222 34799999999
Q ss_pred CCC------hhhhhcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577 101 PLT------EKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145 (221)
Q Consensus 101 p~~------~~t~~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g 145 (221)
|.. ++...+. .......+++|+++|+.|.-.+-..+.+...+.+.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 943 1222222 34567778999999999998888888888777654
No 78
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.03 E-value=8.9e-09 Score=89.52 Aligned_cols=134 Identities=11% Similarity=0.083 Sum_probs=86.0
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhcC-------------ceecCCHHhhcCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK 92 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~l~ell~~ 92 (221)
++|+|||.|.||.++|..+...|++|.+||+++...+. ..+.| +....++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 47999999999999999999999999999997533222 11223 2455788889999
Q ss_pred CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCe
Q 027577 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ 172 (221)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~ 172 (221)
||+|+.++|...+....+-.+.-...++..++...+. ......+.+.+..... ...|-+-+ |. .-.+=+
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts--~~~~~~la~~~~~~~~--~~~~hp~~-p~------~~~~lv 151 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTS--ALLASAFTEHLAGRER--CLVAHPIN-PP------YLIPVV 151 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC--CCCHHHHHHhcCCccc--EEEEecCC-Cc------ccCceE
Confidence 9999999996654444443333333455555543333 3456677777754332 34443332 21 111236
Q ss_pred EECCCCCcC
Q 027577 173 AMTPHVSGT 181 (221)
Q Consensus 173 ~~tPH~a~~ 181 (221)
.++|+-++.
T Consensus 152 eiv~~~~t~ 160 (308)
T PRK06129 152 EVVPAPWTA 160 (308)
T ss_pred EEeCCCCCC
Confidence 688887654
No 79
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.02 E-value=6.7e-09 Score=89.54 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=79.9
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK 92 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~ 92 (221)
++|+|||.|.||..+|..+...|++|.+||+++...+...+ .+ +....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 68999999999999999999999999999987543322110 12 23445665 4789
Q ss_pred CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEE-EcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (221)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI-n~srg~~vd~~al~~al~~g~i~~a~lDV~~ 156 (221)
||+|+.|+|..++.+..+-.+....++++++|+ |+|.-. ...+.+.+... -+..++..+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~-~r~~g~h~~~ 144 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRP-ERFIGIHFMN 144 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCc-ccEEEeeccC
Confidence 999999999776665555556777889999998 554433 34677766432 2223555444
No 80
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.02 E-value=7.8e-09 Score=91.91 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=80.2
Q ss_pred CCCEEEEEcc-CHHHHHHHHHHcc-CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577 35 EGKTVGTVGC-GRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 35 ~g~~vgIIG~-G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
...||+|||+ |.||+++|+.|+. +|.+|+++|+... ...++++.+++||+|++|+|. ..+..++.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv-~~~~~~l~- 69 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPI-RHTAALIE- 69 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCH-HHHHHHHH-
Confidence 4679999999 9999999999985 5899999998411 124678889999999999993 23333332
Q ss_pred HHH---hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCC--CCCCCCCCCCeEECCC
Q 027577 113 DRI---AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP--KDHPWRYMPNQAMTPH 177 (221)
Q Consensus 113 ~~~---~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~--~~~~l~~~~n~~~tPH 177 (221)
+.. ..++++++|+|++.-+. .+.+++........ ..-|.. ..+.+++-.++++||.
T Consensus 70 ~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~~fV-----G~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 70 EYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQAEVV-----GLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred HHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcCCCEE-----eeCCCCCCCCCcccCCCeEEEeCC
Confidence 222 24799999999987552 22222222222212 222432 1235666667889986
No 81
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.02 E-value=3.3e-09 Score=102.24 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=93.9
Q ss_pred CEEEEEccCHHHHHHHHHHccCC--CeEEEEcCCCCChhHHHhcCce--ecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~--~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
++|+|||+|.||.++++.++..| .+|++||+++...+.+.+.|+. ...+++++++++|+|++|+|.. ....++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999888 4799999987655555566653 3456788899999999999942 333333 3
Q ss_pred HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC---------CCCCCCCCCCCeEECCCCCc
Q 027577 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA---------PKDHPWRYMPNQAMTPHVSG 180 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~---------~~~~~l~~~~n~~~tPH~a~ 180 (221)
+....++++++|++++.......+.+.+.+....++ +..+-|. ..+..|+.-.+++++|+-..
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r-----~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAG-----FVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCe-----EEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 444567889999999875543345555555432222 2223332 12335667778899997654
No 82
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.02 E-value=3.2e-09 Score=91.74 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=75.9
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCC
Q 027577 48 GKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122 (221)
Q Consensus 48 G~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga 122 (221)
|+.+|++|...|++|++||++.... +.+.+.|+...++..++++++|+|++|+|..+.+..++ ...+..+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 8899999999999999999865322 34566788888889999999999999999887787776 45888899999
Q ss_pred EEEEcCCCCccCHHHHHHHHHh
Q 027577 123 LIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 123 ~lIn~srg~~vd~~al~~al~~ 144 (221)
++||++.. +.+.+++.|+.
T Consensus 111 IVID~STI---sP~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCTV---SPVVLYYSLEK 129 (341)
T ss_pred EEEECCCC---CHHHHHHHHHH
Confidence 99999775 55566655554
No 83
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.01 E-value=4.1e-09 Score=82.03 Aligned_cols=111 Identities=16% Similarity=0.269 Sum_probs=79.9
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhH-HHhcCc----eecCCHHhhcCCCCEEEEeCCCChh-
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL-EKETGA----KFEEDLDTMLPKCDIVVVNTPLTEK- 105 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~-~~~~g~----~~~~~l~ell~~aDvVv~~~p~~~~- 105 (221)
.+.+++++|+|+|.||+.+++.+...| .+|.++|++....+. .+..+. ....+.+++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 366899999999999999999998886 789999987543332 333332 1345777888999999999996543
Q ss_pred hhh-cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 106 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 106 t~~-~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
... .+.. ..++++.+++|++..+... .+.+.+++.++.
T Consensus 96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~ 134 (155)
T cd01065 96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK 134 (155)
T ss_pred CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence 112 2322 2368999999998765443 787877776554
No 84
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.00 E-value=2.5e-09 Score=96.51 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=77.5
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------------------cC-ceecCCHHhhcCCCCEE
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV 96 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~l~ell~~aDvV 96 (221)
++|+|||+|.||..+|..|...|++|++||+++...+.... .| +....+++++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 47999999999999999999999999999987543322221 23 44556788889999999
Q ss_pred EEeCCCChh------hhhcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHH
Q 027577 97 VVNTPLTEK------TRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC 142 (221)
Q Consensus 97 v~~~p~~~~------t~~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al 142 (221)
++|+|.... ...+. .......+++++++|+.|.-.+-..+.+.+.+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 999994322 11122 23456678999999999876666666776444
No 85
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.98 E-value=2.5e-09 Score=91.49 Aligned_cols=109 Identities=19% Similarity=0.155 Sum_probs=80.4
Q ss_pred CCCEEEEEccCHHHHHHHHHHcc--CCCeEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKP--FNCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~--~G~~V~-~~d~~~~~~~-~~~~~g~-~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
..++|||||+|.||+.+++.+.. .++++. ++|+++...+ .+...+. ..+.+++++++++|+|++|+|.. +..-
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~--~h~e 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS--VLRA 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH--HHHH
Confidence 35799999999999999999975 478865 6787653322 3334453 45678999999999999999943 2222
Q ss_pred chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
+ ....++.|..++..+.+.+.+.++|.++.++++..
T Consensus 83 ~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 83 I---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred H---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 2 23445678888888899888889999988886655
No 86
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.98 E-value=2.1e-09 Score=93.49 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=72.2
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCCCCEEEEeCCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell~~aDvVv~~~p~ 102 (221)
++|+|||+|.||..+|..|...|++|.+|++++...+..... ++....++++.++++|+|++|+|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 479999999999999999999999999999975443333332 344456788888999999999994
Q ss_pred ChhhhhcchHHHHhcCCCCCEEEEcCCCCcc
Q 027577 103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIM 133 (221)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg~~v 133 (221)
..+..++ .+....+++++++|+++.|--.
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence 4444444 3455667889999999866433
No 87
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.98 E-value=4.6e-09 Score=97.03 Aligned_cols=116 Identities=13% Similarity=0.071 Sum_probs=81.7
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-------------------hcC-ceecCCHHhhcCCCCEE
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-------------------ETG-AKFEEDLDTMLPKCDIV 96 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-------------------~~g-~~~~~~l~ell~~aDvV 96 (221)
++|||||+|.||.++|..+...|++|.+||+++...+... ..+ +...+++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 5899999999999999999999999999999764332211 112 45667898999999999
Q ss_pred EEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577 97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (221)
Q Consensus 97 v~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~ 156 (221)
+.++|...+.+..+-.+.-+.++++++|...+.| + ....+.+.+..... ..++-+.
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg-i-~~s~l~~~~~~~~r--~~~~hP~ 140 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSG-F-LPSDLQEGMTHPER--LFVAHPY 140 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC-C-CHHHHHhhcCCcce--EEEEecC
Confidence 9999977666665544555567777765544444 3 35577777654332 3455433
No 88
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.98 E-value=7.2e-09 Score=92.53 Aligned_cols=91 Identities=18% Similarity=0.278 Sum_probs=69.2
Q ss_pred CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577 35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (221)
Q Consensus 35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~ 113 (221)
..++|+||| +|.||+++|+.|+..|+.|.+||++.. .+.++++++||+|++|+|... +..++ .+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~-~~~~~-~~ 161 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL-TEEVI-AR 161 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HH
Confidence 458999999 999999999999999999999998421 256778899999999999543 34444 33
Q ss_pred HHhcCCCCCEEEEcCCCCccCHHHHHHH
Q 027577 114 RIAKMKKGVLIVNNARGAIMDTQAVVDA 141 (221)
Q Consensus 114 ~~~~mk~ga~lIn~srg~~vd~~al~~a 141 (221)
... +++|++|++++.-+..-..++.+.
T Consensus 162 l~~-l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 162 LPP-LPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred HhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence 444 899999999977554333444443
No 89
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.97 E-value=1.7e-09 Score=85.16 Aligned_cols=92 Identities=23% Similarity=0.346 Sum_probs=65.8
Q ss_pred EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCCCCEEEEeCCCC
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPLT 103 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell~~aDvVv~~~p~~ 103 (221)
||+|+|.|++|.++|..|...|.+|..|.+++...+..... .+...++++++++++|+|++++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 69999999999999999999999999999975322222211 133457899999999999999992
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
...+ -+-++....++++..+|+++.|=
T Consensus 80 ~~~~-~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 80 QAHR-EVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp GGHH-HHHHHHTTTSHTT-EEEETS-SE
T ss_pred HHHH-HHHHHHhhccCCCCEEEEecCCc
Confidence 2223 24455667788999999998773
No 90
>PRK07680 late competence protein ComER; Validated
Probab=98.97 E-value=3.6e-09 Score=90.38 Aligned_cols=103 Identities=12% Similarity=0.269 Sum_probs=76.1
Q ss_pred CEEEEEccCHHHHHHHHHHccCCC----eEEEEcCCCCChhHHHh-c-CceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEKE-T-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~-~-g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i 110 (221)
++|+|||+|+||+.+++.|...|. +|.+++|++...+.+.. . ++....+..+++.++|+|++++| ......++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence 479999999999999999988873 79999997644333322 2 56666788888999999999998 22333433
Q ss_pred hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (221)
Q Consensus 111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~ 143 (221)
++....++++.+||+++.| +..+.|.+.+.
T Consensus 80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3455567888999999865 36777776654
No 91
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.95 E-value=2.5e-08 Score=86.64 Aligned_cols=106 Identities=13% Similarity=0.213 Sum_probs=73.4
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----cC--------------ceecCCHHhhcCCCCEEE
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TG--------------AKFEEDLDTMLPKCDIVV 97 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g--------------~~~~~~l~ell~~aDvVv 97 (221)
++|+|||+|.||..+|..+...|++|++||++....+...+ .+ +....++++.+++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 58999999999999999999999999999987543332221 11 234457888899999999
Q ss_pred EeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 98 ~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
+|+|...+....+-.+.-..++++++|+..+.| +....+.+.+..
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~ 129 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTR 129 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence 999965443333333343456777777655444 345677777643
No 92
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.93 E-value=3.3e-08 Score=84.80 Aligned_cols=105 Identities=15% Similarity=0.185 Sum_probs=77.0
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-----------HHHhcC-------------ceecCCHHhhcCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----------LEKETG-------------AKFEEDLDTMLPK 92 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-----------~~~~~g-------------~~~~~~l~ell~~ 92 (221)
++|+|||.|.||..+|..+...|++|+++|+++...+ ...+.| +...++++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5799999999999999999999999999998764332 111222 23345555 4789
Q ss_pred CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
||+|+.|+|.+.+.+.-+-.+..+.++++++|+..+.| +....+.+.+..
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 99999999966666655555666778999988655555 566688887753
No 93
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.93 E-value=1.3e-08 Score=87.80 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=82.1
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhcC-------------ceecCCHHhhcCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK 92 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~l~ell~~ 92 (221)
++|||||.|.||..+|..+...|++|.+||+++...+. +.+.| +....++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999997654332 11112 2245677 45799
Q ss_pred CCEEEEeCCCChhhhhcchHHHHhcC-CCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577 93 CDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (221)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~m-k~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~ 156 (221)
||+|+-|+|.+.+.+..+-.+.-+.+ +++++|++.+.+-.+ .++..++... =+..++..|.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~~-~r~~g~hf~~ 146 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKRP-GRVLGLHFFN 146 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCC-ccEEEEecCC
Confidence 99999999988888877765555555 889999888776544 4444444322 1234566554
No 94
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.92 E-value=1.5e-08 Score=87.43 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=79.9
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------cC-------------ceecCCHHhh
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TG-------------AKFEEDLDTM 89 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g-------------~~~~~~l~el 89 (221)
++|+|||+|.||..+|..+...|++|++||+++...+...+ .+ +....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 58999999999999999999999999999987643321100 01 1233445 56
Q ss_pred cCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577 90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (221)
Q Consensus 90 l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~ 155 (221)
+++||+|+.++|...+.+..+-++.-..++++++|++.+.| +....+.+.+... -+..++..|
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~-~r~ig~hf~ 145 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERK-DRFIGMHWF 145 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCc-ccEEEEecC
Confidence 78999999999966554454545555667889999888777 4566777776532 233455533
No 95
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.92 E-value=3.4e-09 Score=94.51 Aligned_cols=96 Identities=18% Similarity=0.271 Sum_probs=74.0
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hcCcee------cCCHHhhcCCCCEEEEeCCCC-h
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKF------EEDLDTMLPKCDIVVVNTPLT-E 104 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~------~~~l~ell~~aDvVv~~~p~~-~ 104 (221)
.+.+++|.|+|.|.+|+..++.++.+|++|.++|+++...+.+. ..+... ..++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 36788999999999999999999999999999998754333322 223211 134677889999999998542 2
Q ss_pred hhhhcchHHHHhcCCCCCEEEEcC
Q 027577 105 KTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
.+..+++++.++.|+++++|||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 244578899999999999999987
No 96
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.92 E-value=4.7e-09 Score=90.53 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=67.1
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||+|+|||.| .||+.+|..|...|+.|.+|++.. .++.+++++||+|+++++.. +.
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~----~~ 215 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRP----RL 215 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCCh----hc
Confidence 458999999999996 999999999999999999998743 16888999999999999843 34
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+.... +++|+++||+|-..
T Consensus 216 v~~~~---ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW---LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh---ccCCcEEEEecccc
Confidence 54443 79999999998644
No 97
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.92 E-value=6.2e-09 Score=88.18 Aligned_cols=103 Identities=13% Similarity=0.251 Sum_probs=74.8
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCe---EEEEcCCCCChhHHHh-c-CceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKE-T-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~-~-g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
++|||||+|+||+++++.|...|.. +.+++|+....+.+.. . ++....+.+++++++|+|++++| ......++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence 4799999999999999999877753 5788886543333333 3 46666788889999999999999 333444443
Q ss_pred HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g 145 (221)
. + .++++.++|+++- -+..+.|.+.+..+
T Consensus 80 ~--l-~~~~~~~vis~~a--g~~~~~l~~~~~~~ 108 (258)
T PRK06476 80 A--L-RFRPGQTVISVIA--ATDRAALLEWIGHD 108 (258)
T ss_pred H--h-ccCCCCEEEEECC--CCCHHHHHHHhCCC
Confidence 2 2 2578899999874 37778888877653
No 98
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.90 E-value=1.9e-08 Score=87.12 Aligned_cols=139 Identities=14% Similarity=0.204 Sum_probs=102.4
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC-CCCEEEEeCCCChhhhhcchHHH
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFDKDR 114 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDvVv~~~p~~~~t~~~i~~~~ 114 (221)
-.+|||||+|+||+-+|+.+...|+.|+.+||+. -.+.+...|...++.+.++++ +.|+|++|+. -..+..++..--
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekilatyp 129 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKILATYP 129 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHHHhcC
Confidence 5689999999999999999999999999999976 556677788888888988885 6999999986 223333333333
Q ss_pred HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC-CCCCCCCCCCCCCCCeEECCCCC
Q 027577 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN-PQPAPKDHPWRYMPNQAMTPHVS 179 (221)
Q Consensus 115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~-~ep~~~~~~l~~~~n~~~tPH~a 179 (221)
+.++|.|++++++..-.....+++.+.|-+.--. +-+.. ..|...+|.+..+|=|+.--.++
T Consensus 130 fqrlrrgtlfvdvlSvKefek~lfekYLPkdfDI---lctHpmfGPksvnh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 130 FQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDI---LCTHPMFGPKSVNHEWQGLPFVYDKVRIG 192 (480)
T ss_pred chhhccceeEeeeeecchhHHHHHHHhCccccce---EeecCCcCCCcCCCccccCceEEEEeecc
Confidence 5668999999999988888888888887654222 11211 13445677788888666554444
No 99
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.90 E-value=1.6e-09 Score=82.34 Aligned_cols=93 Identities=19% Similarity=0.310 Sum_probs=56.9
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEE-cCCCCChhHHHh-cCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~-~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
-...+|+|||.|++|..+++.|...|+.|..+ +|+..+.+.+.. .+...+.+++++++++|++++++|++. .. -+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~-~va 85 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IA-EVA 85 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HH-HHH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HH-HHH
Confidence 34679999999999999999999999998765 565433333322 333345578899999999999999543 22 233
Q ss_pred HHHHhc--CCCCCEEEEcC
Q 027577 112 KDRIAK--MKKGVLIVNNA 128 (221)
Q Consensus 112 ~~~~~~--mk~ga~lIn~s 128 (221)
+++-.. .++|.+|+.+|
T Consensus 86 ~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHHCC--S-TT-EEEES-
T ss_pred HHHHHhccCCCCcEEEECC
Confidence 444444 68999999985
No 100
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.89 E-value=6.8e-09 Score=94.80 Aligned_cols=111 Identities=11% Similarity=0.072 Sum_probs=92.8
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCChhHHHhc-----CceecCCHHhhcCC---CCEEEEeCCCChhhhhcchHHHHhcC
Q 027577 47 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKDRIAKM 118 (221)
Q Consensus 47 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~~~~l~ell~~---aDvVv~~~p~~~~t~~~i~~~~~~~m 118 (221)
||+.+|++|...|++|.+|||++...+.+.+. ++....+++++++. +|+|++++|..+.+..++ ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 79999999999999999999987655555442 47777899998874 899999999988888888 4688889
Q ss_pred CCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC
Q 027577 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 158 (221)
Q Consensus 119 k~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e 158 (221)
.+|.++||++....-+...+.+.+++..+.....=|...+
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~ 119 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGE 119 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCH
Confidence 9999999999999999999999999998884444455543
No 101
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.88 E-value=1.2e-08 Score=94.34 Aligned_cols=116 Identities=21% Similarity=0.198 Sum_probs=85.2
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhcC-------------ceecCCHHhhcCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK 92 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~l~ell~~ 92 (221)
++|||||+|.||..||..+...|++|.+||+++...+. ..+.| +....++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 68999999999999999999999999999997654332 12223 355567766 569
Q ss_pred CCEEEEeCCCChhhhhcchHHHHhcCCCCCEE-EEcCCCCccCHHHHHHHHHhCCceEEEeeCCCC
Q 027577 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157 (221)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~l-In~srg~~vd~~al~~al~~g~i~~a~lDV~~~ 157 (221)
||+|+-++|.+.+.+..+-.+.-..+++++++ .|+|.-.+ ..+..++..- =+..++..|.+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p-~r~~G~hff~P 148 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHP-ERVAGLHFFNP 148 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCc-ccEEEEeecCC
Confidence 99999999988888877766655667899999 58877655 4666666532 12246665553
No 102
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.88 E-value=1.3e-08 Score=86.37 Aligned_cols=99 Identities=19% Similarity=0.339 Sum_probs=78.4
Q ss_pred CEEEEEccCHHHHHHHHHHccCC----CeEEEEcCCCCChh-HHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
++|||||+|+||++++..+...| .+|++.+|+..... ....+|+....+.+++..++|+|++++. |.. -
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~----~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQD----L 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHh----H
Confidence 58999999999999999999888 57999999875553 5667777656677899999999999997 432 2
Q ss_pred HHHHhcCC---CCCEEEEcCCCCccCHHHHHHHHH
Q 027577 112 KDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS 143 (221)
Q Consensus 112 ~~~~~~mk---~ga~lIn~srg~~vd~~al~~al~ 143 (221)
.+.+..++ ++.+||+++.| +..+.|.+.+.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~ 108 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG 108 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence 33444454 79999999988 56777877775
No 103
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.87 E-value=8.7e-09 Score=87.94 Aligned_cols=90 Identities=23% Similarity=0.362 Sum_probs=73.4
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
-|.||||+|||+|+-|++-|..|+..|.+|++--|.. .+.+.+.+.|+... +.+|+++++|+|.+.+|+ +....++.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PD-e~q~~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPD-EQQKEVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCch-hhHHHHHH
Confidence 4899999999999999999999999999987665544 33567777888865 899999999999999994 33445566
Q ss_pred HHHHhcCCCCCEE
Q 027577 112 KDRIAKMKKGVLI 124 (221)
Q Consensus 112 ~~~~~~mk~ga~l 124 (221)
++.-..|++|+.+
T Consensus 93 ~~I~p~Lk~G~aL 105 (338)
T COG0059 93 KEIAPNLKEGAAL 105 (338)
T ss_pred HHhhhhhcCCceE
Confidence 6777888888754
No 104
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.86 E-value=2.6e-08 Score=85.43 Aligned_cols=103 Identities=14% Similarity=0.277 Sum_probs=73.5
Q ss_pred CEEEEEccCHHHHHHHHHHccCC----CeEEEEcCCCCC-hhHH-Hhc-CceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMD-PQLE-KET-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~-~~~~-~~~-g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
++|+|||+|+||.++++.+...| .+|.+|+++... .+.. ... ++....+.+++++++|+|++|+| ......+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 47999999999999999998877 679999885421 1111 222 23444678888999999999999 2223333
Q ss_pred chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~ 143 (221)
+ .+....++++.+||++..| +..+.|.+.+.
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3 3344556788899999888 66777877664
No 105
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.85 E-value=1.1e-08 Score=86.86 Aligned_cols=101 Identities=16% Similarity=0.233 Sum_probs=72.3
Q ss_pred CEEEEEccCHHHHHHHHHHccCC---CeEEEEcCCCCChhHHHh-cCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFN---CNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
++|+|||+|.||..+++.+...| .+|.+++|++...+.+.+ .++....+.+++++++|+|++|+|. .....++ +
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~-~ 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVL-S 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHH-H
Confidence 58999999999999999998888 689999997644443433 4666667888889999999999982 2233333 2
Q ss_pred HHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~ 143 (221)
+....+ +.+||++.-|- ..+.+.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 233333 46888887764 5666666654
No 106
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.84 E-value=9.8e-09 Score=87.67 Aligned_cols=94 Identities=20% Similarity=0.307 Sum_probs=80.4
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~ 113 (221)
+.||.+.|.|+|.+|+..|+.|+.||.+|++....+-..-.+...|.+.. +++|++++.|+++.++. .+.+|..+
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTG----c~dii~~~ 286 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTG----CKDIITGE 286 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccC----CcchhhHH
Confidence 57999999999999999999999999999998876654444555677754 89999999999998775 56789999
Q ss_pred HHhcCCCCCEEEEcCCCCc
Q 027577 114 RIAKMKKGVLIVNNARGAI 132 (221)
Q Consensus 114 ~~~~mk~ga~lIn~srg~~ 132 (221)
.|..||+++++.|++.-..
T Consensus 287 H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHhCcCCcEEeccccccc
Confidence 9999999999999987544
No 107
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.84 E-value=3.6e-09 Score=81.27 Aligned_cols=95 Identities=25% Similarity=0.355 Sum_probs=68.9
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChh-HHHhc---Cc--eecCCHHhhcCCCCEEEEeCCCChh
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQ-LEKET---GA--KFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~-~~~~~---g~--~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
+++++++.|||.|.+|+.++..|...|++ |++++|+..+.+ .+... .+ ...+++.+.+.++|+|+.++|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 68999999999999999999999999997 999999754332 23333 22 2345677778999999999984432
Q ss_pred hhhcchHHHHhcCCCC-CEEEEcCCC
Q 027577 106 TRGMFDKDRIAKMKKG-VLIVNNARG 130 (221)
Q Consensus 106 t~~~i~~~~~~~mk~g-a~lIn~srg 130 (221)
.+.++.++...+. .+++|++.-
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~P 111 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVP 111 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS
T ss_pred ---ccCHHHHHHHHhhhhceeccccC
Confidence 6777777655443 377777643
No 108
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.83 E-value=3.2e-08 Score=88.73 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=77.2
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----------------cCce--ecCCHHhhcCCCCEEEE
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----------------TGAK--FEEDLDTMLPKCDIVVV 98 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----------------~g~~--~~~~l~ell~~aDvVv~ 98 (221)
++|+|||+|.||..+|..+. .|++|++||+++...+...+ .+.. ...+..+++++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 47999999999999997776 49999999997654333222 1222 22346777899999999
Q ss_pred eCCCChhh-------hhcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCc
Q 027577 99 NTPLTEKT-------RGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147 (221)
Q Consensus 99 ~~p~~~~t-------~~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i 147 (221)
|+|...+- ..+. -+.... +++|.++|+.|.-.+=..+.+.+.+.+..+
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v 136 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENI 136 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcE
Confidence 99944111 1111 123344 799999999999999888889888766433
No 109
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.82 E-value=3e-08 Score=83.02 Aligned_cols=106 Identities=14% Similarity=0.261 Sum_probs=72.0
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCC---Ce-EEEEcCC-CCChh-HHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFN---CN-LLYHDRV-KMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G---~~-V~~~d~~-~~~~~-~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~ 108 (221)
..++|+|||+|+||+++++.+...| .+ +++++++ +...+ .....++....+++++++++|+|++++|. .....
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHH
Confidence 3578999999999999999987665 33 7778764 22222 23345676667888999999999999993 22222
Q ss_pred cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577 109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145 (221)
Q Consensus 109 ~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g 145 (221)
++ ++.-..++ +.+||+++-| ++.+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 22 22322344 6799999877 4555676666543
No 110
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.82 E-value=3.3e-08 Score=91.43 Aligned_cols=119 Identities=16% Similarity=0.118 Sum_probs=84.5
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcC
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP 91 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~ 91 (221)
=++|||||.|.||+.||..+...|++|.+||+++...+.. .+.| +....++++ +.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 3579999999999999999999999999999976443211 1122 334567765 56
Q ss_pred CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEE-EcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (221)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI-n~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep 159 (221)
+||+|+.++|.+.+.+..+-.+.-..++++++|. |+|.-. ...+.+.+.. .-+..++..|.+-|
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~---i~~iA~~~~~-p~r~~G~HFf~Pap 148 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS---ITAIAAGLAR-PERVAGLHFFNPAP 148 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC---HHHHHHhcCc-ccceEEEeccCccc
Confidence 9999999999887877776666666678888776 665543 3566676653 33446777665433
No 111
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.77 E-value=3.9e-08 Score=78.34 Aligned_cols=82 Identities=28% Similarity=0.380 Sum_probs=69.1
Q ss_pred cCCCCCEEEEEccCHH-HHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577 32 YDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i 110 (221)
.+|.|++|.|||.|.| |..+|+.|...|.+|.+.+++. .++.+.+.++|+||.+++.. +++
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~----~ii 101 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKP----GLV 101 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCC----cee
Confidence 3699999999999996 8889999999999999999852 36778899999999999832 267
Q ss_pred hHHHHhcCCCCCEEEEcCCCCccC
Q 027577 111 DKDRIAKMKKGVLIVNNARGAIMD 134 (221)
Q Consensus 111 ~~~~~~~mk~ga~lIn~srg~~vd 134 (221)
..+. ++++.++||++.-.-+|
T Consensus 102 ~~~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 102 KGDM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred cHHH---ccCCeEEEEccCCCccc
Confidence 7765 57899999999888777
No 112
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.76 E-value=3.9e-08 Score=84.84 Aligned_cols=79 Identities=25% Similarity=0.357 Sum_probs=65.3
Q ss_pred ccCCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEc-CCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577 31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHD-RVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 31 ~~~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~ 108 (221)
+.++.||+|+||| .|.||+.+|.+|...|+.|.+|+ ++. ++++++++||+|+++++...
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~---- 213 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPE---- 213 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChh----
Confidence 3479999999999 99999999999999999999996 432 46888999999999998433
Q ss_pred cchHHHHhcCCCCCEEEEcCCCC
Q 027577 109 MFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 109 ~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
.+.... +++|+++||++--.
T Consensus 214 ~v~~~~---lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW---IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe---ecCCCEEEEcCCcc
Confidence 344333 89999999998644
No 113
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.74 E-value=5.6e-08 Score=82.87 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=74.1
Q ss_pred CEEEEEccCHHHHHHHHHHccC--CCe-EEEEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~--G~~-V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
++|||||+|.||+.+++.+... +++ +.++|+++...+. .+..+...+.++++++.++|+|++|+| +.... +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~--~~~~~---~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECAS--VNAVE---E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCC--hHHHH---H
Confidence 4899999999999999998765 466 5568886533332 334466667789999999999999998 22221 2
Q ss_pred HHHhcCCCCCEEEEcCCCCccCH---HHHHHHHHhCCce
Q 027577 113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA 148 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~srg~~vd~---~al~~al~~g~i~ 148 (221)
-....++.|..++..+-|.+.|. +.|.++.++++..
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 22334556777777888877763 4566766666544
No 114
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.72 E-value=8.2e-08 Score=84.70 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=74.2
Q ss_pred HHHHHHHHccCCCeEEEEcCCCC-----ChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCC
Q 027577 48 GKLLLQRLKPFNCNLLYHDRVKM-----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122 (221)
Q Consensus 48 G~~iA~~l~~~G~~V~~~d~~~~-----~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga 122 (221)
|..+|..|...|++|++||++.. ..+.+...|+....+..+++++||+|++++|....++.++ ......+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 88999999999999999998753 1223455677777788899999999999999554466666 36777889999
Q ss_pred EEEEcCCCCccCH-HHHHHHHH
Q 027577 123 LIVNNARGAIMDT-QAVVDACS 143 (221)
Q Consensus 123 ~lIn~srg~~vd~-~al~~al~ 143 (221)
+|||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999877655 55656664
No 115
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.67 E-value=1.3e-07 Score=78.25 Aligned_cols=94 Identities=17% Similarity=0.237 Sum_probs=64.1
Q ss_pred CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------cCc--e-ecCCHHhhcCCCCEEEEeCCCCh
Q 027577 37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------TGA--K-FEEDLDTMLPKCDIVVVNTPLTE 104 (221)
Q Consensus 37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------~g~--~-~~~~l~ell~~aDvVv~~~p~~~ 104 (221)
++|+||| .|+||+.+++.|...|.+|.++++++...+.... .++ . ...+..+.++++|+|++++|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 5899997 8999999999999999999999987543322211 121 1 1235678889999999999932
Q ss_pred hhhhcchHHHHhcCCCCCEEEEcCCCCcc
Q 027577 105 KTRGMFDKDRIAKMKKGVLIVNNARGAIM 133 (221)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~lIn~srg~~v 133 (221)
....++ ++....++ +.++|+++.|--.
T Consensus 80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 80 HVLKTL-ESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred HHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence 233333 22223344 5899999877443
No 116
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.67 E-value=8.9e-08 Score=82.10 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=67.9
Q ss_pred ccCCCCCEEEEEccCHH-HHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||.|.+ |+.+|..|...|+.|+++... ..++.+.+++||+|+.+++ ..++
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG----~~~~ 214 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVG----KRNV 214 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCC----CcCc
Confidence 45799999999999988 999999999999999987642 2367889999999999998 3456
Q ss_pred chHHHHhcCCCCCEEEEcCCCCc
Q 027577 110 FDKDRIAKMKKGVLIVNNARGAI 132 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~~ 132 (221)
++. +.+|+|+++||++--..
T Consensus 215 i~~---~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 215 LTA---DMVKPGATVIDVGMNRD 234 (285)
T ss_pred cCH---HHcCCCCEEEEcccccc
Confidence 776 45799999999986543
No 117
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.66 E-value=3.2e-07 Score=78.97 Aligned_cols=108 Identities=12% Similarity=0.156 Sum_probs=74.7
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce-----------ecCCHHhhcCCCCEEEEeCCCChh
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------FEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-----------~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
++|+|||.|.||..+|..|...|++|.+++++....+...+.|.. ...+.+++ +.+|+|++++|. .+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence 479999999999999999999999999999865444433333431 13445555 889999999993 33
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
+..++ +.....+.+++.||....| +-.++.+.+.+....+.
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 43333 3344556778889888776 33456666666555544
No 118
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.66 E-value=1.8e-07 Score=82.12 Aligned_cols=107 Identities=19% Similarity=0.298 Sum_probs=75.0
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce-----------------ecCCHHhhcCCCCEEEEe
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------------FEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-----------------~~~~l~ell~~aDvVv~~ 99 (221)
++|+|||.|.||..+|..|...|++|.++++++. .+...+.+.. ...+. +.++.+|+|+++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 5899999999999999999999999999998542 2333333322 12334 567899999999
Q ss_pred CCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 100 ~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
+|. +....++ ++....++++++||.+..| +...+.+.+.+...++.
T Consensus 81 vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~ 126 (341)
T PRK08229 81 VKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL 126 (341)
T ss_pred ecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence 984 3444443 4455667889999988654 44556677777654443
No 119
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.64 E-value=1.2e-07 Score=81.22 Aligned_cols=80 Identities=24% Similarity=0.325 Sum_probs=65.7
Q ss_pred ccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||+|+|||. |.||+.+|..|...|+.|.+|... ..++++.+++||+|+.+++.. ++
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~----~~ 214 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRG----HF 214 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCcc----cc
Confidence 45799999999999 999999999999999999998431 126888999999999999833 34
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+.... +++|+++||+|--.
T Consensus 215 v~~~~---ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKEF---VKEGAVVIDVGMNR 233 (284)
T ss_pred CCHHH---ccCCcEEEEeccee
Confidence 55443 79999999998544
No 120
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.63 E-value=1.2e-06 Score=73.11 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=101.2
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCe---EEEEcCCC----CCh--------hHHHhcCceec-CCHHhhcCCCCE
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVK----MDP--------QLEKETGAKFE-EDLDTMLPKCDI 95 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~---V~~~d~~~----~~~--------~~~~~~g~~~~-~~l~ell~~aDv 95 (221)
..+.++++.|+|.|.+|+.+|+.|...|++ |+++||+. ... +.++..+.... .++.+.++++|+
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 468899999999999999999999999984 99999973 221 12233221111 267788889999
Q ss_pred EEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCC-ceEEEeeCCCCCCCCCCCCCCCCCCeEE
Q 027577 96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH-IAGYSGDVWNPQPAPKDHPWRYMPNQAM 174 (221)
Q Consensus 96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~-i~~a~lDV~~~ep~~~~~~l~~~~n~~~ 174 (221)
|+.++| .+++.++.++.|.++.++...+ .+..|.-+.++.+.|. +. .|= .+. ...+..|+++
T Consensus 101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~ls--nP~~e~~~~~A~~~ga~i~---a~G--~~~-----~~~Q~nn~~~ 163 (226)
T cd05311 101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALA--NPVPEIWPEEAKEAGADIV---ATG--RSD-----FPNQVNNVLG 163 (226)
T ss_pred EEeCCC-----CCCCCHHHHHhhCCCCEEEEeC--CCCCcCCHHHHHHcCCcEE---EeC--CCC-----Cccccceeee
Confidence 999987 4678888899999999999888 4444544444444443 23 221 111 2346689999
Q ss_pred CCCCCcCCHH-------HHHHHHHHHHHHHHHcC
Q 027577 175 TPHVSGTTID-------LRYAAGVKDMLDRYFKG 201 (221)
Q Consensus 175 tPH~a~~t~~-------~~~~~~~~~~~~~~~~g 201 (221)
-|=++-.... ..|.....+.+..+..-
T Consensus 164 fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~ 197 (226)
T cd05311 164 FPGIFRGALDVRATKITEEMKLAAAEAIADLAEE 197 (226)
T ss_pred cchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCc
Confidence 9988543222 44444455556555543
No 121
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.61 E-value=4.2e-07 Score=78.41 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=75.0
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce-------------ecCCHHhhcCCCCEEEEeCCCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------------FEEDLDTMLPKCDIVVVNTPLT 103 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------------~~~~l~ell~~aDvVv~~~p~~ 103 (221)
++|+|||.|.||..+|..|...|++|.++++ ....+...+.|.. ...+.++..+.+|+|++++|.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 5799999999999999999999999999998 4333333333321 123556666889999999993
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
..+..++ ++....++++++||.+.-| +-..+.+.+.+.+.++.
T Consensus 79 ~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 79 YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 3333333 3344556778888887665 44466777777655544
No 122
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.59 E-value=2.7e-07 Score=78.43 Aligned_cols=98 Identities=19% Similarity=0.361 Sum_probs=66.4
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCC----CeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i 110 (221)
..+||+|||+|+||.++++.+...+ .++++++++... .++....+..++++++|+|++|+| ...+..++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl 74 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN------TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL 74 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc------CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH
Confidence 3578999999999999999998765 248889886432 233445577788889999999998 23334333
Q ss_pred hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (221)
Q Consensus 111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~ 143 (221)
. +....+++ ..+|++..| +..+.+.+.+.
T Consensus 75 ~-~i~~~l~~-~~iIS~~aG--i~~~~l~~~~~ 103 (260)
T PTZ00431 75 L-EIKPYLGS-KLLISICGG--LNLKTLEEMVG 103 (260)
T ss_pred H-HHHhhccC-CEEEEEeCC--ccHHHHHHHcC
Confidence 3 34344554 466776666 34555555553
No 123
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.58 E-value=1.8e-07 Score=75.35 Aligned_cols=114 Identities=13% Similarity=0.177 Sum_probs=76.9
Q ss_pred EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH----H-------h-------------cCceecCCHHhhcCCC
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE----K-------E-------------TGAKFEEDLDTMLPKC 93 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~----~-------~-------------~g~~~~~~l~ell~~a 93 (221)
+|+|||.|.||+.+|..+...|++|.+||+++...+.. + + ..+....+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 69999999999999999999999999999976432110 0 0 1234567899888 99
Q ss_pred CEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (221)
Q Consensus 94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~ 155 (221)
|+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+ +....|...+.. .-+..++-.|
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~ 138 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFF 138 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE-
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEecc
Confidence 9999999977777776777777788899998776544 556667666642 3334566655
No 124
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.57 E-value=2.2e-07 Score=80.79 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=71.3
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------cCceecCCHHhhcCCCCEEEEeCCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TGAKFEEDLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g~~~~~~l~ell~~aDvVv~~~p~ 102 (221)
++|+|||.|++|+++|+.|...|++|..|.+++...+.... .++....+++++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 68999999999999999999999999999986422211111 123445789999999999999999
Q ss_pred ChhhhhcchHHHHhcCCCCCEEEEcCCCCccC
Q 027577 103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD 134 (221)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd 134 (221)
+...+.++. +.-..+++++.+|+++.|=-.+
T Consensus 81 s~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~ 111 (329)
T COG0240 81 SQALREVLR-QLKPLLLKDAIIVSATKGLEPE 111 (329)
T ss_pred hHHHHHHHH-HHhhhccCCCeEEEEeccccCC
Confidence 333333332 3335678999999999985444
No 125
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.57 E-value=3.3e-07 Score=74.86 Aligned_cols=90 Identities=14% Similarity=0.211 Sum_probs=64.2
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC-hhHH-HhcC--ceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLE-KETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-~~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
++++|+|.|+||..+|+++...|++|++-+++... .+.+ +..+ +.. .+.++..+.+|+|++++|... ... +.+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~-~~~~dA~~~aDVVvLAVP~~a-~~~-v~~ 78 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITG-GSNEDAAALADVVVLAVPFEA-IPD-VLA 78 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcccccc-CChHHHHhcCCEEEEeccHHH-HHh-HHH
Confidence 68999999999999999999999999888665422 2222 2222 233 477899999999999999432 222 234
Q ss_pred HHHhcCCCCCEEEEcCCC
Q 027577 113 DRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~srg 130 (221)
+....+. |.++|+++-.
T Consensus 79 ~l~~~~~-~KIvID~tnp 95 (211)
T COG2085 79 ELRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHHhC-CeEEEecCCC
Confidence 4555555 8999998753
No 126
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.57 E-value=8.9e-08 Score=77.46 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=69.1
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH--------------------hcCceecCCHHhhcCCCCEE
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--------------------ETGAKFEEDLDTMLPKCDIV 96 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~--------------------~~g~~~~~~l~ell~~aDvV 96 (221)
|+|+|||+|.+|..+|..+...|++|+++|.++...+... ........+.++.++++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 6899999999999999999999999999998753221111 11234556788889999999
Q ss_pred EEeCCCChhh-h------hcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHH-HHHHh
Q 027577 97 VVNTPLTEKT-R------GMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVV-DACSS 144 (221)
Q Consensus 97 v~~~p~~~~t-~------~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~-~al~~ 144 (221)
++|+| ||.. . .+. -+.....++++.++|.-|.-.+=..+.+. ..|++
T Consensus 81 ~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~ 137 (185)
T PF03721_consen 81 FICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK 137 (185)
T ss_dssp EE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred EEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence 99998 3421 1 111 23456778999999999998887777444 44443
No 127
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.57 E-value=5.7e-07 Score=63.60 Aligned_cols=66 Identities=32% Similarity=0.473 Sum_probs=55.4
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
.+++++++|+|.|.+|+.++..+... +.+|.++|+ |+++.+++. .+.+.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~----~~~~~ 69 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPA----GVPVL 69 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCC----CCCch
Confidence 58899999999999999999999988 568999987 999999873 23455
Q ss_pred HHHHhcCCCCCEEEEcC
Q 027577 112 KDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~s 128 (221)
++....+++++++++++
T Consensus 70 ~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 70 EEATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHHhcCCCCEEEecC
Confidence 55677889999999874
No 128
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.55 E-value=4.1e-07 Score=79.42 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=64.3
Q ss_pred CCCCEEEEEccCHHHHHHHHHHcc-CC-CeEEEEcCCCCChhHH-Hhc---C--ceecCCHHhhcCCCCEEEEeCCCChh
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLE-KET---G--AKFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~-~~~---g--~~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
...++|+|||+|.+|+.+++.+.. ++ .+|.+|+|++.+.+.+ ... + +..+.++++++++||+|+.++|..
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~-- 200 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST-- 200 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence 457899999999999999985543 44 5799999986544332 221 3 455678999999999998888743
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
..++.. +.+++|+++.-++.
T Consensus 201 -~pvl~~---~~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 -EPLVRG---EWLKPGTHLDLVGN 220 (314)
T ss_pred -CCEecH---HHcCCCCEEEeeCC
Confidence 455654 34689995554543
No 129
>PLN00203 glutamyl-tRNA reductase
Probab=98.55 E-value=1.5e-07 Score=87.20 Aligned_cols=93 Identities=19% Similarity=0.322 Sum_probs=68.0
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHH-hc-Cc--e--ecCCHHhhcCCCCEEEEeCCCChh
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ET-GA--K--FEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~-~~-g~--~--~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
++.+++|+|||.|.||+.+++.|...|+ +|++++|+....+.+. .+ +. . ..+++.+.+.++|+|+.++| .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence 4889999999999999999999999997 6999999864443332 22 22 1 23466788899999999987 3
Q ss_pred hhhcchHHHHhcCCC-------CCEEEEcC
Q 027577 106 TRGMFDKDRIAKMKK-------GVLIVNNA 128 (221)
Q Consensus 106 t~~~i~~~~~~~mk~-------ga~lIn~s 128 (221)
...++..+.++.+.+ ..+|||.+
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 345677777776643 13666665
No 130
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.54 E-value=3.6e-07 Score=79.66 Aligned_cols=94 Identities=27% Similarity=0.350 Sum_probs=65.9
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCC-hhHHHhcCceec--CCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMD-PQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~-~~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.+++|+|||.|.||+.+++.++..| .+|++++|++.. .+.+...|.... +++.+.+.++|+|+.++|.... ..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~- 253 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AK- 253 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HH-
Confidence 68999999999999999999998866 579999997643 344555565432 3466778899999999984332 22
Q ss_pred chHHHHhcC-CCCCEEEEcCC
Q 027577 110 FDKDRIAKM-KKGVLIVNNAR 129 (221)
Q Consensus 110 i~~~~~~~m-k~ga~lIn~sr 129 (221)
+.+..++.. +++.++||++.
T Consensus 254 ~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 254 IVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred HHHHHHhhCCCCCeEEEEeCC
Confidence 222233322 35678888764
No 131
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.54 E-value=3.8e-07 Score=84.04 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=75.2
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec--CC-------------------------
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--ED------------------------- 85 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~------------------------- 85 (221)
.+.+.++.|+|+|.+|...++.++.+|.+|+++|++....+.++.+|...+ +.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 456789999999999999999999999999999988766666666665431 10
Q ss_pred HHhhcCCCCEEEEeC--CCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 86 LDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 86 l~ell~~aDvVv~~~--p~~~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
+.+.++++|+|+.++ |..+ ...++.++.++.||+|++|||++-
T Consensus 241 ~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 345578899998877 2211 235788899999999999999975
No 132
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.54 E-value=3.6e-07 Score=78.49 Aligned_cols=80 Identities=24% Similarity=0.393 Sum_probs=66.8
Q ss_pred ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+..|.||++.|||.|. +|+.+|..|...|++|++++++. .++.+.+++||+|+.+++. .++
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~----p~~ 214 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGK----PGL 214 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCC----Ccc
Confidence 3479999999999988 99999999999999999998632 2678889999999999983 335
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..+. +|+|+++||++--.
T Consensus 215 i~~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VTKDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred cCHHH---cCCCcEEEEcCCCc
Confidence 66654 68999999998644
No 133
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.54 E-value=2.3e-07 Score=84.06 Aligned_cols=94 Identities=27% Similarity=0.426 Sum_probs=68.5
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCCh-hHHHhcCcee--cCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDP-QLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~-~~~~~~g~~~--~~~l~ell~~aDvVv~~~p~~~~t~~ 108 (221)
.+.|++|+|||+|.||+.+++.|...| .+|++++++.... +.+...+... ..++.+.+..+|+|+.|++. ...
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 488999999999999999999999999 6799999976432 2444444322 24667788999999999863 345
Q ss_pred cchHHHHhcCC----CCCEEEEcCC
Q 027577 109 MFDKDRIAKMK----KGVLIVNNAR 129 (221)
Q Consensus 109 ~i~~~~~~~mk----~ga~lIn~sr 129 (221)
+++.+.++.+. ...+++|.+.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 67776665542 2347777764
No 134
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.50 E-value=4.9e-07 Score=80.42 Aligned_cols=99 Identities=12% Similarity=0.182 Sum_probs=68.8
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCC-------CeEEEEcCCCCC-----hhHHHh--------------cCceecCCHH
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKMD-----PQLEKE--------------TGAKFEEDLD 87 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G-------~~V~~~d~~~~~-----~~~~~~--------------~g~~~~~~l~ 87 (221)
...++|+|||.|++|.++|..|...| .+|..|.+++.. .+...+ .++...++++
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 34579999999999999999998766 789999876531 111111 1234457888
Q ss_pred hhcCCCCEEEEeCCCChhhhhcchHHHHh--cCCCCCEEEEcCCCCccC
Q 027577 88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIA--KMKKGVLIVNNARGAIMD 134 (221)
Q Consensus 88 ell~~aDvVv~~~p~~~~t~~~i~~~~~~--~mk~ga~lIn~srg~~vd 134 (221)
++++.+|+|++++| +...+.++ ++.-. .+++++++|+++.|=-.+
T Consensus 89 eav~~aDiIvlAVP-sq~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 89 EAVEDADLLIFVIP-HQFLESVL-SQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HHHhcCCEEEEEcC-hHHHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence 99999999999999 22333333 33333 466788999999884433
No 135
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.49 E-value=4.8e-07 Score=79.86 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=66.4
Q ss_pred EEEEEccCHHHHHHHHHHccCC--------CeEEEEcCCCC--Chh---HHHh--------------cCceecCCHHhhc
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFN--------CNLLYHDRVKM--DPQ---LEKE--------------TGAKFEEDLDTML 90 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G--------~~V~~~d~~~~--~~~---~~~~--------------~g~~~~~~l~ell 90 (221)
+|+|||.|++|.++|..+...| .+|..|.+.+. ..+ .... .++...+++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998877 89999987320 111 1100 0133457899999
Q ss_pred CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCc
Q 027577 91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI 132 (221)
Q Consensus 91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~ 132 (221)
+++|+|++++| +...+.+ -.+.-..++++..+|+++.|=-
T Consensus 81 ~~ADiIIlAVP-s~~i~~v-l~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGI-CKQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred hcCCEEEEECC-hHHHHHH-HHHHHhhcCCCCEEEEEeCCcc
Confidence 99999999999 2333333 3445556788999999998843
No 136
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.48 E-value=3.6e-06 Score=77.37 Aligned_cols=136 Identities=13% Similarity=0.106 Sum_probs=88.4
Q ss_pred CEEEEEccCHHHHHHHHHHccC--CCeEEEEcCCCCChhHHH----------------h-c--CceecCCHHhhcCCCCE
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEK----------------E-T--GAKFEEDLDTMLPKCDI 95 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~----------------~-~--g~~~~~~l~ell~~aDv 95 (221)
++|+|||+|.+|..+|..|... |++|+++|.++...+... + . .....++.++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 6899999999999999999866 688999998653322211 1 0 13344567788899999
Q ss_pred EEEeCCCChhh------------hhcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee-CCCCCCC
Q 027577 96 VVVNTPLTEKT------------RGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQPA 160 (221)
Q Consensus 96 Vv~~~p~~~~t------------~~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD-V~~~ep~ 160 (221)
+++|+| ||.. ..+. -++.-..++++.+||.-|.-.+=..+.+...+.+.. .|.-.. ++.+|=+
T Consensus 82 i~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl 159 (473)
T PLN02353 82 VFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFL 159 (473)
T ss_pred EEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCcc
Confidence 999996 3321 1221 234566789999999999888777778888777631 111111 2344533
Q ss_pred CC---CCCCCCCCCeEE
Q 027577 161 PK---DHPWRYMPNQAM 174 (221)
Q Consensus 161 ~~---~~~l~~~~n~~~ 174 (221)
.+ -+.+...|.+++
T Consensus 160 ~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 160 AEGTAIEDLFKPDRVLI 176 (473)
T ss_pred CCCCcccccCCCCEEEE
Confidence 33 334555666653
No 137
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.48 E-value=3.9e-07 Score=82.68 Aligned_cols=93 Identities=26% Similarity=0.432 Sum_probs=66.2
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHhcCcee--cCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~~g~~~--~~~l~ell~~aDvVv~~~p~~~~t~~ 108 (221)
.+.|++|+|||.|.||+.+++.|...|+ +|+++++++.... .+...|... ..++.+.+.++|+|+.|+|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 4789999999999999999999999998 7999999764433 444455332 245667788999999998733 33
Q ss_pred cchHHHHhcC-----CCCCEEEEcC
Q 027577 109 MFDKDRIAKM-----KKGVLIVNNA 128 (221)
Q Consensus 109 ~i~~~~~~~m-----k~ga~lIn~s 128 (221)
++..+.++.+ +.+.++||++
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeC
Confidence 4555555443 2345666664
No 138
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.44 E-value=8.6e-07 Score=77.77 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=67.6
Q ss_pred CCCEEEEEccCHHHHHHHHHHcc--CCCeEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT 106 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t 106 (221)
.-+++||||+|.+|+..++.+.. ...+|.+||++....+.+. +.+ +..+.+.++++++||+|++|+|..
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~--- 203 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR--- 203 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---
Confidence 35899999999999998777643 2357999999865443222 234 445689999999999999999843
Q ss_pred hhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 107 RGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
..++..+ .+|+|+.|..++.-.
T Consensus 204 ~P~~~~~---~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 204 KPVVKAD---WVSEGTHINAIGADA 225 (325)
T ss_pred CcEecHH---HcCCCCEEEecCCCC
Confidence 4566554 469999999998543
No 139
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.42 E-value=3.4e-07 Score=72.77 Aligned_cols=97 Identities=20% Similarity=0.279 Sum_probs=67.8
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce---e-----------------------cCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK---F-----------------------EED 85 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~---~-----------------------~~~ 85 (221)
..+...+|.|+|.|..|+..++.++.+|++|..+|......+.....+.. . ...
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 35777999999999999999999999999999999765333333333221 1 123
Q ss_pred HHhhcCCCCEEEEeCC-CChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 86 LDTMLPKCDIVVVNTP-LTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 86 l~ell~~aDvVv~~~p-~~~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
+.+.++.+|+|+.++- .....-.++.++.++.|+++.+|+|+|
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 5677788999986432 244556789999999999999999996
No 140
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.42 E-value=3.6e-06 Score=74.58 Aligned_cols=140 Identities=19% Similarity=0.316 Sum_probs=94.9
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-------------------HHhcC-ceecCCHHhhcCCCCEE
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-------------------EKETG-AKFEEDLDTMLPKCDIV 96 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-------------------~~~~g-~~~~~~l~ell~~aDvV 96 (221)
.+|||||+|-||-++|..+...|++|+++|.++...+. +.+.| .+..++.++ ++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEE
Confidence 79999999999999999999999999999987543211 11122 344455555 4599999
Q ss_pred EEeCCCChhhh-------hcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC--CceEEEeeC---CCCCCCCC
Q 027577 97 VVNTPLTEKTR-------GMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGDV---WNPQPAPK 162 (221)
Q Consensus 97 v~~~p~~~~t~-------~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g--~i~~a~lDV---~~~ep~~~ 162 (221)
++|+| ||-+. .+. .+..-..|++|.++|==|.-.+=.++.+..-|.+. .+. ..-|. |.+|-..+
T Consensus 89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence 99998 44322 222 23456779999999999988888888888877663 344 33564 35554444
Q ss_pred CCCCC---CCCCeEECCCCCcCCHH
Q 027577 163 DHPWR---YMPNQAMTPHVSGTTID 184 (221)
Q Consensus 163 ~~~l~---~~~n~~~tPH~a~~t~~ 184 (221)
.+.+. +.|.| |||.|.+
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~ 186 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPK 186 (436)
T ss_pred CchhhhhhcCCce-----eecCCHH
Confidence 44444 34444 3677665
No 141
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.41 E-value=1.3e-06 Score=76.44 Aligned_cols=93 Identities=15% Similarity=0.264 Sum_probs=64.3
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhc-CCCCEEEEeCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTML-PKCDIVVVNTP 101 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell-~~aDvVv~~~p 101 (221)
++|+|||.|.||..+|..|...|.+|.+|+|++...+...+. ++....++++.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 479999999999999999999999999999864322222210 122335666766 58999999999
Q ss_pred CChhhhhcchHHHHh-cCCCCCEEEEcCCCC
Q 027577 102 LTEKTRGMFDKDRIA-KMKKGVLIVNNARGA 131 (221)
Q Consensus 102 ~~~~t~~~i~~~~~~-~mk~ga~lIn~srg~ 131 (221)
+..+..++. +... .+++++.+|....|=
T Consensus 81 -s~~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 -TQQLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred -HHHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 333444332 3333 567778788777764
No 142
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.40 E-value=1.3e-06 Score=74.21 Aligned_cols=126 Identities=15% Similarity=0.138 Sum_probs=77.3
Q ss_pred HHHHHccCC--CeEEEEcCCCCChhHHHhcCce--ecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEE
Q 027577 51 LLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN 126 (221)
Q Consensus 51 iA~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~--~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn 126 (221)
+|+.|+..| .+|+++|+++...+.+.+.|+. ...+ .+.++++|+|++|+|.. .+.. +-++....++++++|++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~-~~~~-~l~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVS-AIED-VLEEIAPYLKPGAIVTD 77 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HH-HHHH-HHHHHHCGS-TTSEEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHH-HHHH-HHHHhhhhcCCCcEEEE
Confidence 477787777 7899999987666666667763 2223 57889999999999922 2333 33556677999999999
Q ss_pred cCCCCccCHHHHHHHHHhCCceEEEee-CCCCC---CCCCCCCCCCCCCeEECCCCCc
Q 027577 127 NARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQ---PAPKDHPWRYMPNQAMTPHVSG 180 (221)
Q Consensus 127 ~srg~~vd~~al~~al~~g~i~~a~lD-V~~~e---p~~~~~~l~~~~n~~~tPH~a~ 180 (221)
++.-+.--.+++.+.+. ......+.- -|.+| |...+..++.-.++++||+-..
T Consensus 78 v~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~ 134 (258)
T PF02153_consen 78 VGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDT 134 (258)
T ss_dssp --S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS
T ss_pred eCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCC
Confidence 98866555555655555 233333333 23332 2223556788889999999873
No 143
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.40 E-value=1.1e-06 Score=77.51 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=65.5
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc---------------CceecCCHHhhcCCCCEEEEeCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---------------GAKFEEDLDTMLPKCDIVVVNTP 101 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~---------------g~~~~~~l~ell~~aDvVv~~~p 101 (221)
++|+|||.|.||..+|..|...| .+..|.+++...+...+. .+....++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 68999999999999999999888 677777654322212111 12344677888899999999999
Q ss_pred CChhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..++.++ ++....+++++.+|++..|=
T Consensus 87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 -SHGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred -HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 33344433 34445678888999998864
No 144
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.38 E-value=2.6e-07 Score=76.31 Aligned_cols=110 Identities=11% Similarity=0.129 Sum_probs=74.1
Q ss_pred CCCEEEEEccCHHHHHHHHHH--ccCCCeEEE-EcCCCCChh-HHHhcCceecCCHHhhcCC--CCEEEEeCCCChhh--
Q 027577 35 EGKTVGTVGCGRIGKLLLQRL--KPFNCNLLY-HDRVKMDPQ-LEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKT-- 106 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l--~~~G~~V~~-~d~~~~~~~-~~~~~g~~~~~~l~ell~~--aDvVv~~~p~~~~t-- 106 (221)
..++|+|||+|.+|+.+++.+ ...|+++.+ +|+++.... ......+...+++++++++ .|+|++|+|.+...
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i 162 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV 162 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence 456899999999999999863 457888664 676432211 1111112233567787754 99999999966542
Q ss_pred -hhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 107 -RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 107 -~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
..+.......-+...++.+|+.+|.+|+..+|..+|..
T Consensus 163 ~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 163 ADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred HHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 12222223344566788899999999999999988864
No 145
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.38 E-value=1.3e-06 Score=80.61 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=74.6
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec--CC-------------------------
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--ED------------------------- 85 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~------------------------- 85 (221)
...+.+|.|+|.|.+|...++.++.+|.+|+++|+++...+.++++|.+.. +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 356999999999999999999999999999999998877777778887622 11
Q ss_pred HHhhcCCCCEEEEeCCCChh-hhhcchHHHHhcCCCCCEEEEcCC
Q 027577 86 LDTMLPKCDIVVVNTPLTEK-TRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 86 l~ell~~aDvVv~~~p~~~~-t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
+.+.++.+|+|+.|...... ...++.++.++.||+|.++++++-
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01123579999998853111 223457889999999999999974
No 146
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=3.8e-06 Score=74.32 Aligned_cols=123 Identities=12% Similarity=0.116 Sum_probs=97.3
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-Hhc----CceecCCHHhhc---CCCCEEEEeCCCChhhh
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET----GAKFEEDLDTML---PKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~----g~~~~~~l~ell---~~aDvVv~~~p~~~~t~ 107 (221)
...||+||+|-||+.+|......|++|.+|||+....+.+ ++. .+....+++|++ +.-.-|++++.......
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD 82 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD 82 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence 3569999999999999999999999999999987554433 222 233455777764 56778888876432223
Q ss_pred hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577 108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep 159 (221)
..| ++++..|.+|-++||-+...--|+..-.++|.+..|.+.+.-|...|.
T Consensus 83 ~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEe 133 (473)
T COG0362 83 AVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEE 133 (473)
T ss_pred HHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccc
Confidence 333 467888999999999999999999999999999999999999988774
No 147
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.37 E-value=1.8e-06 Score=74.09 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=53.5
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhHH-HhcC----ceecCCHHhhcCCCCEEEEeCCCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLE-KETG----AKFEEDLDTMLPKCDIVVVNTPLT 103 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~-~~~g----~~~~~~l~ell~~aDvVv~~~p~~ 103 (221)
..+.++++.|+|.|.+|++++..|...| .+|++++|+....+.+ +..+ +....+..+.+.++|+||.++|..
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 4688999999999999999999999999 6899999976433322 2222 111113456778899999999954
No 148
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.37 E-value=3.4e-06 Score=72.01 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=72.0
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhc---CceecCCHHh-hcCCCCEEEEeCCCCh--h
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKET---GAKFEEDLDT-MLPKCDIVVVNTPLTE--K 105 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~---g~~~~~~l~e-ll~~aDvVv~~~p~~~--~ 105 (221)
...+++++|+|.|.+|++++..+...|++|.+++|+..+.+. .+.. +.....++++ ...++|+|+.++|..- .
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~ 193 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGN 193 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCC
Confidence 356899999999999999999999999999999987543322 2221 2111123433 3357999999999642 1
Q ss_pred hhh-cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 106 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 106 t~~-~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
... .+. ...++++.+++|+.-..... .|.+..++.++.
T Consensus 194 ~~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~ 232 (270)
T TIGR00507 194 IDEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTK 232 (270)
T ss_pred CCCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCe
Confidence 111 122 24467888888887665433 466666655444
No 149
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.34 E-value=6.6e-06 Score=63.60 Aligned_cols=80 Identities=25% Similarity=0.332 Sum_probs=65.8
Q ss_pred ccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||+|.|+|- ..+|+.++..|...|+.|..++++. .++++.+++||+|+.+++.. ++
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~ 84 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EK 84 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----Cc
Confidence 45799999999995 5789999999999999999998632 26778899999999999833 45
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
++.+. +|+|++++|++...
T Consensus 85 i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred cCHHH---cCCCCEEEEcCCCc
Confidence 76655 68999999997654
No 150
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.34 E-value=4e-06 Score=67.95 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=65.0
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHH--hcCceec--CC----HHhhcCCCCEEEEeCC
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--ETGAKFE--ED----LDTMLPKCDIVVVNTP 101 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~--~~g~~~~--~~----l~ell~~aDvVv~~~p 101 (221)
+.+++||++.|||-+ .+|+.+|..|...|+.|..+|.+.... ... ....... .+ +.+.+++||+|+.+++
T Consensus 57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~-~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG 135 (197)
T cd01079 57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV-FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP 135 (197)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc-cccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence 458999999999976 589999999999999999997532110 000 0000011 12 7789999999999998
Q ss_pred CChhhhhc-chHHHHhcCCCCCEEEEcCC
Q 027577 102 LTEKTRGM-FDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 102 ~~~~t~~~-i~~~~~~~mk~ga~lIn~sr 129 (221)
. .++ +..+. .|+|+++||++-
T Consensus 136 ~----~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 136 S----PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred C----CCCccCHHH---cCCCcEEEEcCC
Confidence 2 344 66655 589999999984
No 151
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.33 E-value=2.4e-06 Score=67.45 Aligned_cols=81 Identities=25% Similarity=0.341 Sum_probs=57.5
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.++..|...|+.|..++... .++++.+++||+|+.+++ ..++
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G----~~~~ 92 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVG----KPNL 92 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SS----STT-
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeec----cccc
Confidence 457999999999987 499999999999999999988632 367888999999999997 2345
Q ss_pred chHHHHhcCCCCCEEEEcCCCCc
Q 027577 110 FDKDRIAKMKKGVLIVNNARGAI 132 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~~ 132 (221)
+..+ .+|+|+++||++.-..
T Consensus 93 i~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IKAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-GG---GS-TTEEEEE--CEEE
T ss_pred cccc---cccCCcEEEecCCccc
Confidence 6544 4689999999986544
No 152
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.31 E-value=4.7e-06 Score=71.52 Aligned_cols=79 Identities=19% Similarity=0.331 Sum_probs=65.2
Q ss_pred ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||.|. +|+.+|..|...|+.|.+++.. ..++++.+++||+|+.+++. .++
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~----p~~ 215 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGK----PGF 215 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCC----ccc
Confidence 4579999999999998 9999999999999999998753 13688899999999999951 134
Q ss_pred chHHHHhcCCCCCEEEEcCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg 130 (221)
+.. +.+|+|+++||++--
T Consensus 216 v~~---~~vk~gavVIDvGin 233 (285)
T PRK10792 216 IPG---EWIKPGAIVIDVGIN 233 (285)
T ss_pred ccH---HHcCCCcEEEEcccc
Confidence 655 446899999999843
No 153
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.29 E-value=4.9e-06 Score=71.65 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=64.9
Q ss_pred ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||.|. +|++++..|...|++|.++++.. .++.+.++++|+|+.+++ .+. .
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG-~~~---~ 215 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVG-KPE---L 215 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccC-CCC---c
Confidence 4579999999999998 99999999999999999998721 256677789999999996 222 5
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..+. +++|++++|++-..
T Consensus 216 v~~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 216 IKKDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred CCHHH---cCCCCEEEEEEEee
Confidence 66544 68999999997543
No 154
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.27 E-value=3.4e-06 Score=72.38 Aligned_cols=80 Identities=21% Similarity=0.315 Sum_probs=65.8
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||+|.|||-| .+|+.+|..|...|+.|.++.... .++.+.+++||+|+.+++ ..++
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG----~p~~ 213 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVG----KPDL 213 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecC----CCCc
Confidence 457999999999999 899999999999999999886421 246788999999999997 3346
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..+.+ |+|+++||++-..
T Consensus 214 i~~~~v---k~GavVIDvGi~~ 232 (285)
T PRK14191 214 IKASMV---KKGAVVVDIGINR 232 (285)
T ss_pred CCHHHc---CCCcEEEEeeccc
Confidence 766654 8999999998644
No 155
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.27 E-value=2.8e-06 Score=73.90 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=68.2
Q ss_pred CCCCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhH-HHhc---Ccee-cCCHHhhcCCCCEEEEeCCCChhh
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQL-EKET---GAKF-EEDLDTMLPKCDIVVVNTPLTEKT 106 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~-~~~~---g~~~-~~~l~ell~~aDvVv~~~p~~~~t 106 (221)
...++++|||.|.+|+..++.+.. ++. +|.+|+|++.+.+. +... ++.. +.+.+++++++|+|+.|+|.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~--- 199 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR--- 199 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence 467899999999999999999854 564 59999997644332 2222 2222 468899999999999999844
Q ss_pred hhcchHHHHhcCCCCCEEEEcCCCCc
Q 027577 107 RGMFDKDRIAKMKKGVLIVNNARGAI 132 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~srg~~ 132 (221)
..++.. .+|||+.|..++.-..
T Consensus 200 ~Pl~~~----~~~~g~hi~~iGs~~p 221 (304)
T PRK07340 200 TPVYPE----AARAGRLVVAVGAFTP 221 (304)
T ss_pred CceeCc----cCCCCCEEEecCCCCC
Confidence 355653 3699999999986544
No 156
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.26 E-value=2.9e-06 Score=69.91 Aligned_cols=96 Identities=27% Similarity=0.447 Sum_probs=67.4
Q ss_pred CEEEEEccCHHHHHHHHHHccC--CCe-EEEEcCCCCChh-HHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~--G~~-V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
++|||||+|.||+.+.+.+..- .++ +.+||++..... .....+....+++++++++.|+|+=|.. ++. +.+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS--~~A---v~e 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS--PEA---VRE 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC--HHH---HHH
Confidence 4799999999999999999753 455 788998764433 3334444455789999999999998876 322 222
Q ss_pred HHHhcCCCCCEEEEcCCCCccCHHH
Q 027577 113 DRIAKMKKGVLIVNNARGAIMDTQA 137 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~srg~~vd~~a 137 (221)
-..+.|+.|.-+|-+|-|.+.|+.-
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChHH
Confidence 2334456777777777788886554
No 157
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.26 E-value=2.7e-06 Score=76.99 Aligned_cols=91 Identities=16% Similarity=0.355 Sum_probs=63.5
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHhcC-ce--ecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETG-AK--FEEDLDTMLPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~~g-~~--~~~~l~ell~~aDvVv~~~p~~~~t~ 107 (221)
.+.|++|.|||.|.||+.+++.|...|. ++++++|+....+ .+...+ .. ..+++.+.+.++|+||.|++.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 5889999999999999999999999996 6999999854333 333333 22 2356677889999999999732 3
Q ss_pred hcchHHHHhcCCCCCEEEEcC
Q 027577 108 GMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~s 128 (221)
.++..+... .+..++||.+
T Consensus 255 ~vi~~~~~~--~~~~~~iDLa 273 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDIS 273 (414)
T ss_pred eeECHHHhC--CCCeEEEEeC
Confidence 445544432 1234555554
No 158
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.23 E-value=3.1e-06 Score=76.05 Aligned_cols=93 Identities=27% Similarity=0.428 Sum_probs=67.5
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCC-hhHHHhcCcee--cCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~~g~~~--~~~l~ell~~aDvVv~~~p~~~~t~~ 108 (221)
+|.++++.|||+|.||.-+|+.|...|. +|++.+|+... .+.+.+++... .+++.+.+.++|+||.++. ....
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 4899999999999999999999999995 69999998643 34566677543 4567778899999999975 2344
Q ss_pred cchHHHHhcC-C--CCCEEEEcC
Q 027577 109 MFDKDRIAKM-K--KGVLIVNNA 128 (221)
Q Consensus 109 ~i~~~~~~~m-k--~ga~lIn~s 128 (221)
++..+.+... + +.-++||++
T Consensus 252 ii~~~~ve~a~~~r~~~livDia 274 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIA 274 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEec
Confidence 5555444332 1 124666665
No 159
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=5.7e-06 Score=71.05 Aligned_cols=79 Identities=27% Similarity=0.373 Sum_probs=64.9
Q ss_pred ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||.|. +|+.+|..|...|+.|.+++... .++.+..++||+|+.++.- .++
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~----p~~ 220 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGV----KHL 220 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCC----ccc
Confidence 4579999999999998 99999999999999999988521 3678889999999998752 245
Q ss_pred chHHHHhcCCCCCEEEEcCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg 130 (221)
+..+ .+|+|+++||++--
T Consensus 221 i~~~---~vk~gavVIDvGin 238 (287)
T PRK14176 221 IKAD---MVKEGAVIFDVGIT 238 (287)
T ss_pred cCHH---HcCCCcEEEEeccc
Confidence 6655 46899999999853
No 160
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.22 E-value=1.4e-05 Score=68.14 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=66.4
Q ss_pred CEEEEEccCHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhc--CceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKET--GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~--g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
++|||||+|.||+.+++.+... ++++. ++++........... ++..+.+++++-.+.|+|+.|+|.. .. -+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~--~~---~e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA--AL---KE 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH--HH---HH
Confidence 4899999999999999998765 56643 344422211111212 4566678888855699999999832 11 22
Q ss_pred HHHhcCCCCCEEEEcCCCCccCH---HHHHHHHHhCCce
Q 027577 113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA 148 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~srg~~vd~---~al~~al~~g~i~ 148 (221)
-....|+.|.-++..+-+.+.|. +.|.++.++++..
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 23344566767776666655543 4466666665544
No 161
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.21 E-value=4.3e-06 Score=67.74 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=62.2
Q ss_pred cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHH-Hhc----Cc--ee--c---CCHHhhcCCCCEEEE
Q 027577 32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET----GA--KF--E---EDLDTMLPKCDIVVV 98 (221)
Q Consensus 32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~----g~--~~--~---~~l~ell~~aDvVv~ 98 (221)
..++++++.|+|. |.+|+.+++.|...|.+|.+++|+....+.. ... +. .. . +++.+.++++|+|+.
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 4678999999995 9999999999998999999999865322211 111 11 11 1 223467788999999
Q ss_pred eCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCcc
Q 027577 99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM 133 (221)
Q Consensus 99 ~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~v 133 (221)
++|....+ ... .-...+++.+++|+.+...+
T Consensus 104 at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 104 AGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred CCCCCcee--chh--hhcccCceeEEEEccCCCCC
Confidence 88844321 111 11123446677777665443
No 162
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.21 E-value=4.4e-06 Score=71.49 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=67.0
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.|+++.|+|.+ ..|+.+|..|...|+.|..+.++. .++++.+++||+|+.+++.. ++
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~l 208 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GF 208 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----cc
Confidence 457999999999998 899999999999999999887532 36888899999999999722 56
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+.++. +|+|+++||++-..
T Consensus 209 v~~~~---vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 ITPDM---VKPGATVIDVGINQ 227 (279)
T ss_pred cCHHH---cCCCcEEEEeeccc
Confidence 77766 49999999998543
No 163
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.20 E-value=6.1e-06 Score=72.39 Aligned_cols=89 Identities=21% Similarity=0.185 Sum_probs=66.1
Q ss_pred CCCEEEEEccCHHHHHHHHHHc-cCCC-eEEEEcCCCCChhHHH-----hcCc--eecCCHHhhcCCCCEEEEeCCCChh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK-----ETGA--KFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~~-----~~g~--~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
..++++|||+|.+|+..+..+. ..+. +|.+|+|++.+.+.+. ..++ ..+++++++++++|+|++|+|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 5789999999999999988764 4565 5899999864433222 2233 34678899999999999999844
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCCC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~srg 130 (221)
..++. +.+++|+.|+.++.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34554 456999999998764
No 164
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.20 E-value=7.9e-06 Score=70.42 Aligned_cols=70 Identities=24% Similarity=0.233 Sum_probs=52.6
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHH-HhcC-------ceecCCHHhhcCCCCEEEEeCCC
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETG-------AKFEEDLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~-~~~g-------~~~~~~l~ell~~aDvVv~~~p~ 102 (221)
.+.++++.|+|.|.+|++++..|...|+ +|.++||+..+.+.. +..+ +...+++.+.++++|+||.++|.
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~ 202 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT 202 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence 5788999999999999999999999998 699999976433322 2211 11223455677889999999984
No 165
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.18 E-value=7.8e-06 Score=71.75 Aligned_cols=88 Identities=26% Similarity=0.287 Sum_probs=62.0
Q ss_pred EEEEccCHHHHHHHHHHcc-CCCeEEEEcC-CCCCh-hHHHhcC------------------ceecCCHHhhcCCCCEEE
Q 027577 39 VGTVGCGRIGKLLLQRLKP-FNCNLLYHDR-VKMDP-QLEKETG------------------AKFEEDLDTMLPKCDIVV 97 (221)
Q Consensus 39 vgIIG~G~iG~~iA~~l~~-~G~~V~~~d~-~~~~~-~~~~~~g------------------~~~~~~l~ell~~aDvVv 97 (221)
|||+|+|.||+.+++.+.. -+++|++++. .+... ..+..++ +....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6899999999999999764 4688776543 22111 1222222 222346899999999999
Q ss_pred EeCCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 98 ~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
.|+| .+.+..+.+.+..++++++|+..-.
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~ 109 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK 109 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence 9987 4556788888888998888886543
No 166
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.17 E-value=2.4e-05 Score=68.20 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=75.1
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce--------------ecCCHHhhcCCCCEEEEeCC
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FEEDLDTMLPKCDIVVVNTP 101 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--------------~~~~l~ell~~aDvVv~~~p 101 (221)
.++|+|||.|.||..+|..|...|++|.++.|+. .+.....|.. ...+. +....+|+|++|++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK 81 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLK 81 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEec
Confidence 4689999999999999999999999999999864 2333333321 11122 34578999999998
Q ss_pred CChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 027577 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152 (221)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~l 152 (221)
.. ++...+ +.....+++++.++...-| +-.++.+.+.+...++.++..
T Consensus 82 ~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~ 129 (313)
T PRK06249 82 TT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC 129 (313)
T ss_pred CC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence 43 333222 3344456778888877665 456777777777666665433
No 167
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.17 E-value=5e-06 Score=61.72 Aligned_cols=105 Identities=21% Similarity=0.395 Sum_probs=67.2
Q ss_pred EEEEEccCHHHHHHHHHHccC--CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcch
Q 027577 38 TVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~--G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i~ 111 (221)
+|||||+|.+|+.....+... +.++. ++|+++...+ ..+..++..+++++++++ +.|+|++++|.. .+.-+-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~--~h~~~~ 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPS--SHAEIA 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGG--GHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCc--chHHHH
Confidence 799999999999999888765 55654 6787653333 345678888899999997 799999999932 222222
Q ss_pred HHHHhcCCCCC-EEEEcC-CCCccCHHHHHHHHHhCCc
Q 027577 112 KDRIAKMKKGV-LIVNNA-RGAIMDTQAVVDACSSGHI 147 (221)
Q Consensus 112 ~~~~~~mk~ga-~lIn~s-rg~~vd~~al~~al~~g~i 147 (221)
... ++.|. +++.-= --.+-+.+.|.++.++.+.
T Consensus 80 ~~~---l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 80 KKA---LEAGKHVLVEKPLALTLEEAEELVEAAKEKGV 114 (120)
T ss_dssp HHH---HHTTSEEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred HHH---HHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence 233 33343 334321 1233344556666555443
No 168
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.16 E-value=1e-05 Score=71.01 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=66.5
Q ss_pred CCCEEEEEccCHHHHHHHHHHc-cCCC-eEEEEcCCCCChhHH-Hh----cCc--eecCCHHhhcCCCCEEEEeCCCChh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLE-KE----TGA--KFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~-~~----~g~--~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
..++++|||.|.+|+..++.+. ..+. +|.+|+|+..+.+.+ +. .++ ..++++++.++++|+|+.++|..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 4679999999999999999986 4675 599999986443322 22 243 33578899999999999999853
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
..++..+. +++|+.+..++.
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeCC
Confidence 35565544 689998888764
No 169
>PRK06046 alanine dehydrogenase; Validated
Probab=98.16 E-value=8e-06 Score=71.68 Aligned_cols=88 Identities=26% Similarity=0.421 Sum_probs=64.8
Q ss_pred CCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhHHH-h----cC--ceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK-E----TG--AKFEEDLDTMLPKCDIVVVNTPLTEKT 106 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~-~----~g--~~~~~~l~ell~~aDvVv~~~p~~~~t 106 (221)
-+++||||+|.+|+..++.+.. .+. +|.+||+++...+.+. + .+ +..+.+++++++ +|+|++|+|..
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 5799999999999999998863 455 4888999764433222 1 24 344678899987 99999999843
Q ss_pred hhcchHHHHhcCCCCCEEEEcCCC
Q 027577 107 RGMFDKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~srg 130 (221)
..++..+. +|+|+.|..++.-
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs~ 225 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGAD 225 (326)
T ss_pred CcEecHHH---cCCCCEEEecCCC
Confidence 35666544 5899999988853
No 170
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.16 E-value=4.2e-06 Score=72.01 Aligned_cols=95 Identities=18% Similarity=0.259 Sum_probs=72.7
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-cCce------ecCCHHhhcCCCCEEEEeC--CCC
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAK------FEEDLDTMLPKCDIVVVNT--PLT 103 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~------~~~~l~ell~~aDvVv~~~--p~~ 103 (221)
.+..-+|.|||.|-+|..-|+.+..+|.+|...|.+..+....+. ++.+ ....+++.+.++|+||-++ | .
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp-g 243 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP-G 243 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec-C
Confidence 466778999999999999999999999999999987533322222 2222 1245788999999998654 4 2
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
...-.++.++.++.||||++|||++
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE
Confidence 3345578889999999999999995
No 171
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=98.16 E-value=3.1e-05 Score=64.23 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=68.0
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEE-EEcCCC----------CChhHHHhc-CceecC-----CHHhhc-CCCC
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVK----------MDPQLEKET-GAKFEE-----DLDTML-PKCD 94 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~~----------~~~~~~~~~-g~~~~~-----~l~ell-~~aD 94 (221)
+|.|+||.|.|+|++|+.+|+.|...|.+|+ +.|.+. ...+..++. ++..+. +.++++ .+||
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence 5889999999999999999999999999755 456543 111111111 122111 123333 4799
Q ss_pred EEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
+++-|.+ .+.++.+....++ =.+|+-.+.+.+- . .-.+.|++..+.
T Consensus 100 VlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t-~-~a~~~L~~~Gi~ 145 (217)
T cd05211 100 IFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTT-D-EALRILHERGIV 145 (217)
T ss_pred EEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCC-H-HHHHHHHHCCcE
Confidence 9999987 3467777777676 3455555555554 4 445666666555
No 172
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.14 E-value=1.7e-05 Score=67.33 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=67.8
Q ss_pred CCEEEEEccCHHHHHHHHHHccC---CCeE-EEEcCCCCChhHHHhcCceecCCHHhh-cCCCCEEEEeCCCChhhhhcc
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPF---NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMF 110 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~---G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~el-l~~aDvVv~~~p~~~~t~~~i 110 (221)
.+||||||+|.||+.+++.+..- ++++ .++++.+...+.+.. .+..+.+++++ ....|+|+=|.. ++. +
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~DlVVE~A~--~~a---v 75 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-RVALLDGLPGLLAWRPDLVVEAAG--QQA---I 75 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-cCcccCCHHHHhhcCCCEEEECCC--HHH---H
Confidence 36899999999999999998653 3554 446664422222222 25667889997 578999999886 222 2
Q ss_pred hHHHHhcCCCCCEEEEcCCCCccC---HHHHHHHHHh
Q 027577 111 DKDRIAKMKKGVLIVNNARGAIMD---TQAVVDACSS 144 (221)
Q Consensus 111 ~~~~~~~mk~ga~lIn~srg~~vd---~~al~~al~~ 144 (221)
-+-....|+.|.-++-.|-|.+.| .+.|.++.++
T Consensus 76 ~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 76 AEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 222233456777888888888887 4445555544
No 173
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.14 E-value=2.9e-05 Score=74.91 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=83.3
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------Hhc-------------CceecCCHHhhcCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KET-------------GAKFEEDLDTMLPK 92 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~-------------g~~~~~~l~ell~~ 92 (221)
++|+|||.|.||..+|..+...|++|..||+++...+.. .+. .+....+++ .+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence 589999999999999999999999999999876432110 000 133445664 4789
Q ss_pred CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (221)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~ 155 (221)
||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+ +....|.+.+.. .-+.+++--|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff 452 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFF 452 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecC
Confidence 99999999988788777777777888999988665443 556667777653 2334566644
No 174
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=98.14 E-value=2.6e-05 Score=65.12 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=71.2
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEE-cCCC-------CChhHH----HhcC-------ceecCCHHhhc-C
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRVK-------MDPQLE----KETG-------AKFEEDLDTML-P 91 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~-d~~~-------~~~~~~----~~~g-------~~~~~~l~ell-~ 91 (221)
.++.|++|+|.|+|++|+.+|+.|..+|++|+++ |.+. ...+.. ...+ .... +.++++ .
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~ 105 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLEL 105 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceee
Confidence 3688999999999999999999999999998844 4321 111111 1122 1112 233433 4
Q ss_pred CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
+||+++-|.+ .+.++.+....++ +-+|--+....+. ....+.|+++.+.
T Consensus 106 ~~Dvlip~a~-----~~~i~~~~~~~l~--a~~I~egAN~~~t-~~a~~~L~~rGi~ 154 (227)
T cd01076 106 DCDILIPAAL-----ENQITADNADRIK--AKIIVEAANGPTT-PEADEILHERGVL 154 (227)
T ss_pred cccEEEecCc-----cCccCHHHHhhce--eeEEEeCCCCCCC-HHHHHHHHHCCCE
Confidence 7999999886 4557777777776 4555444444455 5566788887777
No 175
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=1.3e-05 Score=68.64 Aligned_cols=80 Identities=25% Similarity=0.374 Sum_probs=65.1
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-| .+|+.+|..|...|+.|..+.... .++.+.+++||+|+.++. ..++
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvG----kp~~ 213 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVG----KPNL 213 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecC----cccc
Confidence 457999999999988 799999999999999998776421 357788999999999997 2345
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..+. .|+|+++||++--.
T Consensus 214 i~~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 214 ITEDM---VKEGAIVIDIGINR 232 (281)
T ss_pred cCHHH---cCCCcEEEEeeccc
Confidence 76655 57999999998543
No 176
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.10 E-value=1.1e-05 Score=70.82 Aligned_cols=88 Identities=16% Similarity=0.278 Sum_probs=63.6
Q ss_pred CCCEEEEEccCHHHHHHHHHHcc-CC-CeEEEEcCCCCChhHHHh-----cCce--ecCCHHhhcCCCCEEEEeCCCChh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKE-----TGAK--FEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~-----~g~~--~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
..++++|||.|.+|+..+..+.. .+ -+|.+|+|+..+.+.+.+ .++. .+.+++++++++|+|+.++|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 46899999999999999888874 55 469999998654433221 2343 3578899999999999999843
Q ss_pred hhhcchHHHHhcCCCCCEEEEcC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
..++..+. +++|+.+..++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 34565443 57888776654
No 177
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=98.10 E-value=9e-06 Score=59.43 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=57.4
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
.++|++|.|||.|.+|..-++.|...|.+|+++++.. .......... ...+++.+..+|+|+.+++. ++ +++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~~~~~~i~~~-~~~~~~~l~~~~lV~~at~d-~~----~n~ 75 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--EFSEGLIQLI-RREFEEDLDGADLVFAATDD-PE----LNE 75 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--HHHHTSCEEE-ESS-GGGCTTESEEEE-SS--HH----HHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--hhhhhHHHHH-hhhHHHHHhhheEEEecCCC-HH----HHH
Confidence 5889999999999999999999999999999999854 1111111111 23456778899999988862 22 344
Q ss_pred HHHhcCCCCCEEEEcC
Q 027577 113 DRIAKMKKGVLIVNNA 128 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~s 128 (221)
......+.-.+++|++
T Consensus 76 ~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 76 AIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHTTSEEEET
T ss_pred HHHHHHhhCCEEEEEC
Confidence 4444445455677764
No 178
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.09 E-value=2.1e-05 Score=67.51 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=65.9
Q ss_pred ccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||- ..+|+.+|..|...|+.|+.++.. ..++++.+++||+|+.+++ ..++
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG----~p~~ 214 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVG----KPKL 214 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecC----CCCc
Confidence 45799999999996 568999999999999999988642 1367888999999999997 2346
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..+.+ |+|+++||++.-.
T Consensus 215 i~~~~i---k~gavVIDvGi~~ 233 (284)
T PRK14190 215 ITADMV---KEGAVVIDVGVNR 233 (284)
T ss_pred CCHHHc---CCCCEEEEeeccc
Confidence 777665 8999999998655
No 179
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.08 E-value=1.8e-05 Score=69.20 Aligned_cols=91 Identities=19% Similarity=0.318 Sum_probs=67.3
Q ss_pred CCCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT 106 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t 106 (221)
.-++++|||.|..|+..++.+.. +.. +|.+|+|++...+.+. ..+ +..+++.++++++||+|+.+++. +
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~ 203 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---R 203 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---C
Confidence 36799999999999999987753 333 6999999875543222 223 33467899999999999999873 3
Q ss_pred hhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 107 RGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
..+++.+ .+|+|+.|+.++.-.
T Consensus 204 ~P~~~~~---~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 204 EPLLQAE---DIQPGTHITAVGADS 225 (315)
T ss_pred CceeCHH---HcCCCcEEEecCCCC
Confidence 4667654 468999999998543
No 180
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.07 E-value=9.9e-06 Score=62.69 Aligned_cols=110 Identities=16% Similarity=0.200 Sum_probs=73.0
Q ss_pred EEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec--------------CCHHhhcCCCCEEEEeCCCCh
Q 027577 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--------------EDLDTMLPKCDIVVVNTPLTE 104 (221)
Q Consensus 39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--------------~~l~ell~~aDvVv~~~p~~~ 104 (221)
|+|+|.|.||.-+|..|+..|++|.++.+.. ..+...+.|+... .+..+....+|+|++|+.. .
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-Y 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-c
Confidence 6899999999999999999999999999865 3444444443221 1112456789999999973 3
Q ss_pred hhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 027577 105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152 (221)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~l 152 (221)
++...+.. ....+.+++.++-.--| +-.++.+.+.+....+.++..
T Consensus 79 ~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~ 124 (151)
T PF02558_consen 79 QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT 124 (151)
T ss_dssp GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence 34444433 55566677777766555 555667777765556654443
No 181
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.07 E-value=1.6e-05 Score=71.07 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=69.6
Q ss_pred CEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcC---c-------eecCCHHhhcCCCCEEEEeCCCChh
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETG---A-------KFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g---~-------~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
++|.|||+|.||+.+|..|.+.| .+|++.||+..+...+.... + .....+.+++++.|+|+.++|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~-- 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF-- 79 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch--
Confidence 68999999999999999998888 89999999864444332221 2 12345678899999999999832
Q ss_pred hhhcchHHHH-hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCc
Q 027577 106 TRGMFDKDRI-AKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147 (221)
Q Consensus 106 t~~~i~~~~~-~~mk~ga~lIn~srg~~vd~~al~~al~~g~i 147 (221)
++...+ +.++.|.-.++++-.+.-- -++.+..++.++
T Consensus 80 ----~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agi 117 (389)
T COG1748 80 ----VDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGI 117 (389)
T ss_pred ----hhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCe
Confidence 222222 4456777777777654432 344444444433
No 182
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.06 E-value=1.8e-05 Score=69.20 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=70.1
Q ss_pred CCEEEEEccCHHHHHHHHHHccC-CCeEEE-EcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPF-NCNLLY-HDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~-G~~V~~-~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~ 113 (221)
..+|||||+|+||+.+++.+... ++++.+ +++++. .......++....+.++++.+.|+|++|+|.... -+.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~-~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~ 76 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGA-ETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPE 76 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcH-HHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHH
Confidence 36899999999999999999765 788665 687631 1222234444445777888999999999994322 234
Q ss_pred HHhcCCCCCEEEEcCCC--CccC-HHHHHHHHHh-CCce
Q 027577 114 RIAKMKKGVLIVNNARG--AIMD-TQAVVDACSS-GHIA 148 (221)
Q Consensus 114 ~~~~mk~ga~lIn~srg--~~vd-~~al~~al~~-g~i~ 148 (221)
....|+.|.-+|+..-- .+-+ .+.+.++.++ |++.
T Consensus 77 ~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 77 QAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 44557788888887531 1112 3345555554 5665
No 183
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.06 E-value=4.5e-05 Score=73.44 Aligned_cols=115 Identities=14% Similarity=0.049 Sum_probs=82.0
Q ss_pred CEEEEEccCHHHHHHHHHHc-cCCCeEEEEcCCCCChhHH-----------Hh-------------cCceecCCHHhhcC
Q 027577 37 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLE-----------KE-------------TGAKFEEDLDTMLP 91 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~~-----------~~-------------~g~~~~~~l~ell~ 91 (221)
++|+|||.|.||..+|..+. ..|++|..||+++...+.. .+ ..+...++++ .++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence 58999999999999999887 5899999999875321110 00 1233445664 578
Q ss_pred CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (221)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~ 155 (221)
+||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+ +....|.+.+.. .=+.+++.-|
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hff 444 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYF 444 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecC
Confidence 999999999988787777777777788999888655444 455667777643 2234566655
No 184
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=3.3e-05 Score=66.29 Aligned_cols=80 Identities=25% Similarity=0.342 Sum_probs=65.4
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.+|..|...|+.|..+.... .++.+.+++||+|+.+++ ..++
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG----~~~~ 213 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATG----LAKF 213 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecC----CcCc
Confidence 458999999999975 589999999999999999887521 357888999999999997 2345
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..+. .|+|+++||++--.
T Consensus 214 i~~~~---vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VKKDY---IKPGAIVIDVGMDR 232 (284)
T ss_pred cCHHH---cCCCCEEEEccCcc
Confidence 76655 58999999998654
No 185
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=98.06 E-value=2.8e-05 Score=71.68 Aligned_cols=72 Identities=24% Similarity=0.349 Sum_probs=52.2
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhcCceecCCHHhh--cCCCCEEEEeCCCC
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEEDLDTM--LPKCDIVVVNTPLT 103 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~~~l~el--l~~aDvVv~~~p~~ 103 (221)
+.++.+++++|+|.|.+|++++..+...|++|.+++++....+. ....+.... +++++ +.++|+|+.|+|..
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCC
Confidence 44678999999999999999999999999999999986533322 222222211 22222 57899999999954
No 186
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=98.06 E-value=1.7e-05 Score=69.64 Aligned_cols=88 Identities=20% Similarity=0.346 Sum_probs=66.6
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-C-----CHHhhcCCCCEEEEeCCCChhhhh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-E-----DLDTMLPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~-----~l~ell~~aDvVv~~~p~~~~t~~ 108 (221)
.|++|+|+|+|..|....+.++++|++|+++|+++.+.+.++++|...+ + ..+++-+.+|+|+.++| ...
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~--- 241 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PAT--- 241 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhh---
Confidence 3999999999999999999999999999999999888888888886532 1 12223334999999988 332
Q ss_pred cchHHHHhcCCCCCEEEEcC
Q 027577 109 MFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 109 ~i~~~~~~~mk~ga~lIn~s 128 (221)
+ ...++.|+++..++-++
T Consensus 242 -~-~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 242 -L-EPSLKALRRGGTLVLVG 259 (339)
T ss_pred -H-HHHHHHHhcCCEEEEEC
Confidence 2 34566777777777653
No 187
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.04 E-value=3.4e-05 Score=74.61 Aligned_cols=116 Identities=13% Similarity=0.078 Sum_probs=83.9
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------Hh-------------cCceecCCHHhhcCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KE-------------TGAKFEEDLDTMLPK 92 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~-------------~g~~~~~~l~ell~~ 92 (221)
++|+|||.|.||..+|..+...|++|..+|+++...+.. .+ ..+....+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 589999999999999999999999999999876432110 00 0133445664 5789
Q ss_pred CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (221)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~ 156 (221)
||+|+=++|-+.+.+.-+-.+.-+.++++++|...+. -++...|.+.+..- =+..++.-|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~p-~r~ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSRP-EKVIGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCCc-cceEEEeccC
Confidence 9999999998878777777777788899998864433 35667777776542 3345777553
No 188
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=2.6e-05 Score=66.95 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=65.0
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.+|..|...|+.|..++... .++++..++||+|+.+++ ..++
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvG----k~~~ 215 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVG----KPEF 215 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCC----CcCc
Confidence 457999999999965 689999999999999999988531 367788999999999997 2345
Q ss_pred chHHHHhcCCCCCEEEEcCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg 130 (221)
+..+. .|+|+++||++--
T Consensus 216 i~~~~---ik~gavVIDvGin 233 (284)
T PRK14177 216 IKADW---ISEGAVLLDAGYN 233 (284)
T ss_pred cCHHH---cCCCCEEEEecCc
Confidence 76655 5899999999854
No 189
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=2.7e-05 Score=66.97 Aligned_cols=81 Identities=21% Similarity=0.319 Sum_probs=66.1
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.+|..|...|+.|..+.... .++++.+++||+|+.++. ..++
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvG----kp~~ 211 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVG----RPHL 211 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecC----CcCc
Confidence 457999999999964 689999999999999999887521 367888999999999997 2356
Q ss_pred chHHHHhcCCCCCEEEEcCCCCc
Q 027577 110 FDKDRIAKMKKGVLIVNNARGAI 132 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~~ 132 (221)
+..+. +|+|+++||++--.+
T Consensus 212 i~~~~---vk~GavVIDVGin~~ 231 (287)
T PRK14173 212 ITPEM---VRPGAVVVDVGINRV 231 (287)
T ss_pred cCHHH---cCCCCEEEEccCccc
Confidence 77655 489999999987553
No 190
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.02 E-value=3.5e-05 Score=65.42 Aligned_cols=89 Identities=20% Similarity=0.318 Sum_probs=59.0
Q ss_pred CEEEEEcc-CHHHHHHHHHHcc-CCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKP-FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~ 113 (221)
++|+|+|+ |.||+.+++.+.. -++++. ++|+...........++..+.+++++++.+|+|+.++| |+.. .+-
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~--p~~~---~~~ 76 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT--PEAT---LEN 76 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC--HHHH---HHH
Confidence 58999998 9999999998875 468855 47765433222233455556789999989999998876 3332 222
Q ss_pred HHhcCCCCCEEEEcCCC
Q 027577 114 RIAKMKKGVLIVNNARG 130 (221)
Q Consensus 114 ~~~~mk~ga~lIn~srg 130 (221)
....++.|.-+|-...|
T Consensus 77 ~~~al~~G~~vvigttG 93 (257)
T PRK00048 77 LEFALEHGKPLVIGTTG 93 (257)
T ss_pred HHHHHHcCCCEEEECCC
Confidence 33345556666644444
No 191
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=98.02 E-value=2.8e-05 Score=68.35 Aligned_cols=90 Identities=7% Similarity=0.134 Sum_probs=59.4
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
++.+++|.|||.|.||+.+++.|...|. +|++.+|+...... ... .. ..-++..++|+|+.|+..|.....++.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~-~~~---~~-~~~~~~~~~DvVIs~t~~Tas~~p~i~ 245 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPY-RTV---VR-EELSFQDPYDVIFFGSSESAYAFPHLS 245 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccch-hhh---hh-hhhhcccCCCEEEEcCCcCCCCCceee
Confidence 5899999999999999999999999996 59999997632111 100 00 111445789999997533333345565
Q ss_pred HHHHhcCCCCCEEEEcC
Q 027577 112 KDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~s 128 (221)
.+.++..++ .++||.+
T Consensus 246 ~~~~~~~~~-r~~iDLA 261 (338)
T PRK00676 246 WESLADIPD-RIVFDFN 261 (338)
T ss_pred HHHHhhccC-cEEEEec
Confidence 555543322 3666654
No 192
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=98.01 E-value=1.4e-05 Score=69.88 Aligned_cols=93 Identities=20% Similarity=0.269 Sum_probs=56.8
Q ss_pred CCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhHH----HhcC--ceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLE----KETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~----~~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t~ 107 (221)
-++++|||.|..|+..++.+.. ++. +|.+|+|++...+.+ ...+ +..+++.++++++||+|+.|+|.+..+
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~- 206 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA- 206 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence 4689999999999999998754 555 599999976433322 1223 345689999999999999999854422
Q ss_pred hcchHHHHhcCCCCCEEEEcCCCCc
Q 027577 108 GMFDKDRIAKMKKGVLIVNNARGAI 132 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~srg~~ 132 (221)
.++..+ .+++|+.|+.++....
T Consensus 207 P~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 207 PVFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp ESB-GG---GS-TT-EEEE-S-SST
T ss_pred ccccHH---HcCCCcEEEEecCCCC
Confidence 566654 5789999999997644
No 193
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=2.9e-05 Score=67.10 Aligned_cols=81 Identities=22% Similarity=0.321 Sum_probs=65.7
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.+|..|...|+.|..+.... .++++.+++||+|+.+++- .++
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGk----p~~ 214 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGR----PNL 214 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----cCc
Confidence 457999999999965 589999999999999998886421 3678889999999999982 346
Q ss_pred chHHHHhcCCCCCEEEEcCCCCc
Q 027577 110 FDKDRIAKMKKGVLIVNNARGAI 132 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~~ 132 (221)
+..+. +|+|+++||++--.+
T Consensus 215 i~~~~---ik~gavVIDvGin~~ 234 (297)
T PRK14186 215 IGAEM---VKPGAVVVDVGIHRL 234 (297)
T ss_pred cCHHH---cCCCCEEEEeccccc
Confidence 76655 589999999986553
No 194
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.01 E-value=5.9e-05 Score=65.50 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=81.2
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcC
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP 91 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~ 91 (221)
-++|||||.|.||+.+|..+...|++|..+|+++...+.. .+.| +....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 4799999999999999999988779999999974321100 0111 12223333 678
Q ss_pred CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (221)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~ 156 (221)
+||+|+=++|-+.+.+.-+-++.-...+++++|=.-.++ +...++.++++ ..=+..++-.|.
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~~-rper~iG~HFfN 143 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEALK-RPERFIGLHFFN 143 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHhC-CchhEEEEeccC
Confidence 999999999977777777767777778899998544333 55667777773 333446666444
No 195
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=3e-05 Score=66.55 Aligned_cols=80 Identities=20% Similarity=0.322 Sum_probs=65.3
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.+|..|...|+.|..+.... .++++..++||+|+.+++ ..++
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG----~p~~ 212 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVG----VPHF 212 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence 457999999999965 589999999999999999886421 267888999999999997 2346
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..+. +|+|+++||++--.
T Consensus 213 i~~~~---vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IGADA---VKPGAVVIDVGISR 231 (282)
T ss_pred cCHHH---cCCCcEEEEeeccc
Confidence 77665 58999999998644
No 196
>PRK06199 ornithine cyclodeaminase; Validated
Probab=98.01 E-value=2.6e-05 Score=69.81 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=68.1
Q ss_pred CCEEEEEccCHHHHHHHHHHcc-CC-C-eEEEEcCCCCChhH-HH----hc-C---ceecCCHHhhcCCCCEEEEeCCCC
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKP-FN-C-NLLYHDRVKMDPQL-EK----ET-G---AKFEEDLDTMLPKCDIVVVNTPLT 103 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~-~G-~-~V~~~d~~~~~~~~-~~----~~-g---~~~~~~l~ell~~aDvVv~~~p~~ 103 (221)
-++++|||.|..|+..++.+.. +. . +|.+|+|++.+.+. ++ .. + +..+++.++++++||+|+.|++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 5799999999999999998865 42 3 69999998654332 11 11 2 455689999999999999999754
Q ss_pred h---hhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 104 E---KTRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 104 ~---~t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+ .+..++..+. +|+|+.|+.++.-+
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence 3 3346676544 68999888776644
No 197
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=3.2e-05 Score=66.22 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=65.2
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.++..|...|+.|..++... .++.+..++||+|+.+++ -.++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvG----kp~~ 214 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIG----RPKF 214 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcCc
Confidence 457999999999965 589999999999999999987521 367888999999999997 2346
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..+. .|+|+++||++--.
T Consensus 215 i~~~~---ik~gavVIDvGin~ 233 (278)
T PRK14172 215 IDEEY---VKEGAIVIDVGTSS 233 (278)
T ss_pred cCHHH---cCCCcEEEEeeccc
Confidence 77665 58999999997533
No 198
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=3.3e-05 Score=66.27 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=65.0
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.+|..|...|+.|..+.... .++++..++||+|+.++. -.++
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvG----kp~~ 213 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAG----CVNL 213 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcCc
Confidence 457999999999965 589999999999999999887532 368888999999999997 2356
Q ss_pred chHHHHhcCCCCCEEEEcCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg 130 (221)
+..+. .|+|+++||++--
T Consensus 214 i~~~~---vk~GavVIDvGin 231 (282)
T PRK14166 214 LRSDM---VKEGVIVVDVGIN 231 (282)
T ss_pred cCHHH---cCCCCEEEEeccc
Confidence 77665 5899999999853
No 199
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.98 E-value=3.6e-05 Score=66.92 Aligned_cols=91 Identities=11% Similarity=0.125 Sum_probs=67.2
Q ss_pred CCCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhHH-Hh----cC--ceecCCHHhhcCCCCEEEEeCCCChh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLE-KE----TG--AKFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~-~~----~g--~~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
.-+++||||.|..|+..++.+.. +.. +|.+|+|++.+.+.+ +. .+ +..+.+.++++.+||+|+.++|.+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~-- 193 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD-- 193 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence 36899999999999999888754 444 599999986543322 11 24 445678999999999999998843
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
..++..+ .+|||+.+.-++...
T Consensus 194 -~P~~~~~---~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 194 -TPIFNRK---YLGDEYHVNLAGSNY 215 (301)
T ss_pred -CcEecHH---HcCCCceEEecCCCC
Confidence 4667655 457998888877543
No 200
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.98 E-value=2.8e-05 Score=68.56 Aligned_cols=98 Identities=31% Similarity=0.421 Sum_probs=70.0
Q ss_pred cCCCCCEEEEEcc-CHHHHHHHHHHcc-CC-CeEEEEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577 32 YDLEGKTVGTVGC-GRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~ 107 (221)
.++++++|.|+|. |.||+.+++.|.. .| .++++++|+...... ..+.+.....++++.+.++|+|+.++... .
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~---~ 227 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP---K 227 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---c
Confidence 4689999999998 8999999999964 56 478899986533322 22222112346888999999998776522 2
Q ss_pred h-cchHHHHhcCCCCCEEEEcCCCCccCH
Q 027577 108 G-MFDKDRIAKMKKGVLIVNNARGAIMDT 135 (221)
Q Consensus 108 ~-~i~~~~~~~mk~ga~lIn~srg~~vd~ 135 (221)
. +++.+. ++++.++||+++-.=||.
T Consensus 228 ~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 228 GVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 3 366654 478999999998766654
No 201
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.98 E-value=3.6e-05 Score=66.06 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=64.3
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.+|..|...|+.|..+.... .++.+..++||+|+.+++ ..++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvG----kp~~ 214 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVG----KPNF 214 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccC----CcCc
Confidence 457999999999965 589999999999999999887532 367778899999999998 2345
Q ss_pred chHHHHhcCCCCCEEEEcCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg 130 (221)
+..+. .|+|+++||++--
T Consensus 215 i~~~~---vk~gavVIDvGin 232 (282)
T PRK14180 215 ITADM---VKEGAVVIDVGIN 232 (282)
T ss_pred CCHHH---cCCCcEEEEeccc
Confidence 76655 5899999999853
No 202
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.96 E-value=4.8e-05 Score=66.77 Aligned_cols=88 Identities=22% Similarity=0.276 Sum_probs=68.6
Q ss_pred CCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhHHH-----hcC--ceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK-----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT 106 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~-----~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t 106 (221)
-++++|||.|..++..++.++. ++. +|.+|+|++...+.+. ..+ +..+.+.+++++.||+|+.|+|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 5689999999999999998864 555 5999999875544322 223 4567899999999999999998554
Q ss_pred hhcchHHHHhcCCCCCEEEEcCC
Q 027577 107 RGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
.++..+. ++||+.|..++.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 6676655 579999999985
No 203
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.95 E-value=4.2e-05 Score=66.12 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=65.8
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+... ..++++.+++||+|+.++.. .++
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk----~~~ 223 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQ----AMM 223 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCC----cCc
Confidence 458999999999975 58999999999999999998752 13678899999999999972 356
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..+. +|+|+++||++--.
T Consensus 224 i~~~~---vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IKGDW---IKPGAAVIDVGTNA 242 (299)
T ss_pred cCHHH---cCCCCEEEEeeccc
Confidence 77655 58999999998544
No 204
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.95 E-value=4.5e-05 Score=65.79 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=65.4
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.++..|...|+.|..+.... .++.+.+++||+|+.+++ ..++
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvG----kp~~ 216 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVG----IPNF 216 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence 457999999999965 589999999999999999888532 367888999999999997 2345
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..+. .|+|+++||++-..
T Consensus 217 i~~~~---ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VKYSW---IKKGAIVIDVGINS 235 (294)
T ss_pred cCHHH---cCCCCEEEEecccc
Confidence 77655 47999999997543
No 205
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.94 E-value=7.6e-05 Score=65.35 Aligned_cols=95 Identities=19% Similarity=0.295 Sum_probs=61.1
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhH--H---Hh---cC----ceecCCHHhhcCCCCEEEEeC
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL--E---KE---TG----AKFEEDLDTMLPKCDIVVVNT 100 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~--~---~~---~g----~~~~~~l~ell~~aDvVv~~~ 100 (221)
+..+||+|||.|.||..+|..+...| .++..+|.+....+. . .. .+ +....+++ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 46789999999999999999988777 689999986532211 1 00 11 22234666 679999999998
Q ss_pred --CCChh-hh--------hcch--HHHHhcCCCCCEEEEcCC
Q 027577 101 --PLTEK-TR--------GMFD--KDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 101 --p~~~~-t~--------~~i~--~~~~~~mk~ga~lIn~sr 129 (221)
|..+. ++ .++. .+.+....|.+++|+++-
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 43320 00 1111 122344467888998864
No 206
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.94 E-value=3.7e-05 Score=68.04 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=64.7
Q ss_pred CCEEEEEccCHHHHHHHHHHc-cCCC-eEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577 36 GKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t~ 107 (221)
-++++|||.|..++..++.+. -+.. +|.+|+|++...+.+. ..+ +..+++.++++++||+|+.++|.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 578999999999999887664 3444 5999999865433221 123 445689999999999999999732 222
Q ss_pred hcchHHHHhcCCCCCEEEEcCC
Q 027577 108 GMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~sr 129 (221)
.++..+ .+|+|+.|.-++.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 456554 4689999888774
No 207
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.93 E-value=4e-05 Score=62.72 Aligned_cols=94 Identities=23% Similarity=0.257 Sum_probs=67.4
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCC---CCCh---------------h----HHHhcC----cee--
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV---KMDP---------------Q----LEKETG----AKF-- 82 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~---~~~~---------------~----~~~~~g----~~~-- 82 (221)
..|..++|+|+|+|.+|..+|+.|...|. ++.++|+. .... + ...+.. +..
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 36889999999999999999999999998 59999876 1100 0 000111 111
Q ss_pred ----cCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEE
Q 027577 83 ----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN 126 (221)
Q Consensus 83 ----~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn 126 (221)
.++++++++++|+|+-| ..+.+++..+.......++...++..
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 02345678899999988 57888898888888887876666664
No 208
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.93 E-value=0.00011 Score=66.83 Aligned_cols=111 Identities=17% Similarity=0.258 Sum_probs=72.1
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC--------CChhHH------------------HhcCceecC
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK--------MDPQLE------------------KETGAKFEE 84 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~--------~~~~~~------------------~~~g~~~~~ 84 (221)
+.+|.|+||.|.|+|++|...|+.|..+|++|+++..+. ...+.. ...++...
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i- 301 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV- 301 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-
Confidence 457999999999999999999999999999998743311 111100 01123333
Q ss_pred CHHhhc-CCCCEEEEeCCCChhhhhcchHHHHhcCCC-CCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 85 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKK-GVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 85 ~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~-ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
+.++++ ..|||++-|. +.+.|+.+....++. ++.+|--+.-.++..++.... .+..|.
T Consensus 302 ~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L-~~rgI~ 361 (444)
T PRK14031 302 EGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANMPSTPEAIKVF-QDAKIL 361 (444)
T ss_pred CCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHH-HHCCcE
Confidence 334443 4699988775 366788877777754 555565555557777766444 444444
No 209
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=4.6e-05 Score=65.56 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=64.5
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.++..|...|+.|..+.... .++.+.+++||+|+.++. -.++
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvG----kp~~ 215 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIG----SPLK 215 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CCCc
Confidence 347999999999965 589999999999999999887421 367888999999999997 2356
Q ss_pred chHHHHhcCCCCCEEEEcCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg 130 (221)
+..+. .|+|+++||++--
T Consensus 216 i~~~~---vk~GavVIDvGin 233 (288)
T PRK14171 216 LTAEY---FNPESIVIDVGIN 233 (288)
T ss_pred cCHHH---cCCCCEEEEeecc
Confidence 77655 5899999999843
No 210
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=5.1e-05 Score=65.05 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=65.2
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.++..|...++.|..+.... .++++..++||+|+.+++- .++
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk----~~~ 213 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGK----AEL 213 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCc
Confidence 457999999999965 589999999999999999887521 3677888999999999972 456
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..+. .|+|+++||++--.
T Consensus 214 i~~~~---ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VKGAW---VKEGAVVIDVGMNR 232 (282)
T ss_pred cCHHH---cCCCCEEEEeecee
Confidence 77665 57999999998544
No 211
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.93 E-value=4.4e-05 Score=67.33 Aligned_cols=80 Identities=13% Similarity=0.226 Sum_probs=65.4
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.+|..|...++.|..+.... .++++.+++||+|+.++. ..++
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvG----kp~~ 287 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVG----QPNM 287 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcCc
Confidence 457999999999965 589999999999999999887521 367888999999999997 2346
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..+. .|+|+++||++--.
T Consensus 288 i~~d~---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VRGSW---IKPGAVVIDVGINP 306 (364)
T ss_pred CCHHH---cCCCCEEEeccccc
Confidence 77665 58999999998544
No 212
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.92 E-value=5.3e-05 Score=65.95 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=70.1
Q ss_pred CEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHh---------c--CceecCCHHhhcCCCCEEEEeCCCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKE---------T--GAKFEEDLDTMLPKCDIVVVNTPLT 103 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~---------~--g~~~~~~l~ell~~aDvVv~~~p~~ 103 (221)
++|+|||.|.||..+|..+...|. +|+.+|....... ...+ . .+....++++ +++||+|+++.+..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999988775 8999998543211 1100 0 1233457776 78999999998731
Q ss_pred hh-----------hhhcchH--HHHhcCCCCCEEEEcCCCCccCHHHHHHH--HHhCCceEEE--ee
Q 027577 104 EK-----------TRGMFDK--DRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS--GD 153 (221)
Q Consensus 104 ~~-----------t~~~i~~--~~~~~mk~ga~lIn~srg~~vd~~al~~a--l~~g~i~~a~--lD 153 (221)
.. +..++.. +.+....+++++|+++.-.=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 11 1111111 12333457889999875332333334444 4445555554 55
No 213
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=5.5e-05 Score=64.98 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=64.9
Q ss_pred ccCCCCCEEEEEcc-CHHHHHHHHHHcc--CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~ 107 (221)
+.++.||++.|||- ..+|+.+|..|.. .++.|.++... ..++++.+++||+|+.+++. .
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGk----p 214 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGV----A 214 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCC----c
Confidence 45799999999996 4689999999987 78999888752 13688889999999999972 2
Q ss_pred hcchHHHHhcCCCCCEEEEcCCCC
Q 027577 108 GMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+++..+. +|+|+++||++.-.
T Consensus 215 ~~i~~~~---ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVTADM---VKPGAAVLDVGVSR 235 (284)
T ss_pred CccCHHH---cCCCCEEEEccccc
Confidence 4677655 58999999998654
No 214
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.91 E-value=5.1e-05 Score=56.80 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=53.8
Q ss_pred EEEEEc-cCHHHHHHHHHHccC-CCeEEEE-cCCCCChhHHH-hcC-ce--ecCCH--Hhh-cCCCCEEEEeCCCChhhh
Q 027577 38 TVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQLEK-ETG-AK--FEEDL--DTM-LPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 38 ~vgIIG-~G~iG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~-~~g-~~--~~~~l--~el-l~~aDvVv~~~p~~~~t~ 107 (221)
+++|+| .|.+|+.+++.+... ++++.++ ++.....+... ..+ +. ...+. +++ ..++|+|++|+|.... .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~-~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS-K 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH-H
Confidence 589999 599999999999874 7776665 43321111111 111 11 00111 122 2589999999995432 2
Q ss_pred hcchHHHHhcCCCCCEEEEcCC
Q 027577 108 GMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~sr 129 (221)
..+. .....+++|+++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 2222 23455789999999973
No 215
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.91 E-value=0.0003 Score=59.60 Aligned_cols=115 Identities=15% Similarity=0.223 Sum_probs=73.8
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEE-cC-------CCCChhHH-------Hhc------------CceecC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DR-------VKMDPQLE-------KET------------GAKFEE 84 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~-d~-------~~~~~~~~-------~~~------------g~~~~~ 84 (221)
.+|.|+||.|.|+|++|+.+|+.|...|++|+++ |. .....+.. ... +.+..
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~- 112 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF- 112 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-
Confidence 4789999999999999999999999999998843 42 21111111 011 12333
Q ss_pred CHHhhc-CCCCEEEEeCCCChhhhhcchHHHHhcCC-CCC-EEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577 85 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (221)
Q Consensus 85 ~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk-~ga-~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~ 155 (221)
+.++++ .+|||++-|. +.+.|+.+....++ +++ +|+-.+-+.+ .. +-.+.|.++.|. .+=|+.
T Consensus 113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~-t~-~a~~~L~~rGI~-vvPD~l 178 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPC-TA-EAIEVFRQAGVL-FAPGKA 178 (254)
T ss_pred CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCC-CH-HHHHHHHHCCcE-EECchh
Confidence 344444 4699998875 46778888777774 234 5555555555 44 455677777776 344443
No 216
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.91 E-value=4.9e-05 Score=66.72 Aligned_cols=80 Identities=15% Similarity=0.278 Sum_probs=65.1
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.++.||++.|||-+ .+|+.+|..|...|+.|..+.... .++++..++||+|+.+++ ..++
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvG----kp~~ 270 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAG----IPNL 270 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence 457999999999965 589999999999999998887522 257888999999999997 2346
Q ss_pred chHHHHhcCCCCCEEEEcCCCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+..+. +|+|+++||++--.
T Consensus 271 v~~d~---vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VRGSW---LKPGAVVIDVGTTP 289 (345)
T ss_pred cCHHH---cCCCCEEEEccccc
Confidence 77655 58999999998644
No 217
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.90 E-value=5.3e-05 Score=73.08 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=82.3
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------h-------------cCceecCCHHhhcCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLPK 92 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~ell~~ 92 (221)
++|+|||.|.||..+|..+...|++|..+|+++...+... + ..+....++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999998754322100 0 013334555 44799
Q ss_pred CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (221)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~ 155 (221)
||+|+=++|-+.+.+.-+-.+.-+.++++++|-..+.+ ++..+|...++. .=+..++--|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff 452 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFF 452 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecC
Confidence 99999999977777777777777788999998665443 556667776653 2233456544
No 218
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=6.5e-05 Score=64.57 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=64.2
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
+.++.||++.|||-+ .+|+.+|..|... +..|..+.... .++++.+++||+|+.+++.
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~--- 210 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGV--- 210 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC---
Confidence 457999999999975 5899999999877 78888876421 3688889999999999972
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
.+++..+. +|+|+++||++--.
T Consensus 211 -p~~i~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 211 -PLFIKEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred -cCccCHHH---cCCCCEEEEecccc
Confidence 34677655 58999999998644
No 219
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.87 E-value=5.8e-05 Score=72.81 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=83.2
Q ss_pred CEEEEEccCHHHHHHHHHHc-cCCCeEEEEcCCCCChhHH-----------Hh-------------cCceecCCHHhhcC
Q 027577 37 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLE-----------KE-------------TGAKFEEDLDTMLP 91 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~~-----------~~-------------~g~~~~~~l~ell~ 91 (221)
++|+|||.|.||..+|..+. ..|++|..+|+++...+.. .+ ..+...+++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999987 7899999999875322111 00 013344566 4579
Q ss_pred CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (221)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~ 155 (221)
+||+|+=++|-+.+.+.-+-.+.-+.++|+++|...+.+ +....|.+.+... -+.+++.-|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p-~r~ig~Hff 449 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARP-EQVIGLHYF 449 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCcc-cceEEEecC
Confidence 999999999988787777777777788999999765544 5666777776532 234567755
No 220
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.87 E-value=0.00023 Score=53.21 Aligned_cols=100 Identities=20% Similarity=0.314 Sum_probs=66.9
Q ss_pred CEEEEEc----cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577 37 KTVGTVG----CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 37 ~~vgIIG----~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
|+|+||| -+..|..+.+.|++.|++|+.+++.... -.|...+.+++|.-...|++++++| .+.+..+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~-----i~G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v~- 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE-----ILGIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIVD- 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE-----ETTEE-BSSGGGCSST-SEEEE-S--HHHHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE-----ECcEEeeccccCCCCCCCEEEEEcC-HHHHHHHHH-
Confidence 6899999 7889999999999999999999986522 2366677889884478999999999 223333333
Q ss_pred HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
+ +..+....+++..+ ..++++.+.+++..+.
T Consensus 74 ~-~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 74 E-AAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp H-HHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred H-HHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 2 23346678888877 6778888888888777
No 221
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=0.00016 Score=64.44 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=80.6
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH----------------Hhc---C-ceecCCHHhhcCCCCEE
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE----------------KET---G-AKFEEDLDTMLPKCDIV 96 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~----------------~~~---g-~~~~~~l~ell~~aDvV 96 (221)
|+|.|+|.|-+|...+..+..+|++|+.+|..+.+.+.. ++. | ....++.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 689999999999999999999999999999865432211 111 1 34557889999999999
Q ss_pred EEeCCCChhhhhcc--------hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577 97 VVNTPLTEKTRGMF--------DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146 (221)
Q Consensus 97 v~~~p~~~~t~~~i--------~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~ 146 (221)
++|+|..+.-.+-+ -++..+.++..+++|+-|.-.+=..+.+.+.+.+..
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~ 138 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN 138 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence 99998433223322 234566677779999999988777777776655544
No 222
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.83 E-value=6.3e-05 Score=64.19 Aligned_cols=110 Identities=28% Similarity=0.367 Sum_probs=80.5
Q ss_pred ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~ 109 (221)
+.+|+|+++.|||-++ +|+.++..|...++.|.++.... .++.+..++||+|+.++- -.++
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG----~p~~ 212 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVG----KPHF 212 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecC----Cccc
Confidence 3478999999999886 69999999999999999998632 367788899999999986 2355
Q ss_pred chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCCCcCC
Q 027577 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a~~t 182 (221)
+..+ ..|+|+++|+++--.+-+ +++ .=||-..+.. ...-.+||--||.-
T Consensus 213 i~~d---~vk~gavVIDVGinrv~~----------~kl---~GDVdf~~v~--------~~a~~iTPVPGGVG 261 (283)
T COG0190 213 IKAD---MVKPGAVVIDVGINRVND----------GKL---VGDVDFDSVK--------EKASAITPVPGGVG 261 (283)
T ss_pred cccc---cccCCCEEEecCCccccC----------Cce---EeeccHHHHH--------HhhcccCCCCCccC
Confidence 6544 468999999998654433 333 4566444321 12235889888763
No 223
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=8.1e-05 Score=64.01 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=63.8
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHcc----CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
+.++.||++.|||-+ .+|+.++..|.. .++.|..+.... .++.+.+++||+|+.+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG---- 213 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIG---- 213 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecC----
Confidence 457999999999965 589999999988 788888887421 368889999999999996
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
..+++..+.+ |+|+++||++-
T Consensus 214 ~p~li~~~~v---k~GavVIDVGi 234 (286)
T PRK14184 214 RPRFVTADMV---KPGAVVVDVGI 234 (286)
T ss_pred CCCcCCHHHc---CCCCEEEEeee
Confidence 3456777665 89999999974
No 224
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.81 E-value=9.6e-05 Score=63.89 Aligned_cols=80 Identities=16% Similarity=0.275 Sum_probs=63.7
Q ss_pred ccCCCCCEEEEEcc-CHHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
+.++.||++.|||- ..+|+.+|..|... ++.|..+.... .++++.+++||+|+.++.
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvG---- 217 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAG---- 217 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecC----
Confidence 45899999999996 46899999999876 68888876421 367888999999999986
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
..+++..+. +|+|+++||++--.
T Consensus 218 kp~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 218 VPNLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred CcCccCHHH---cCCCCEEEecCCCc
Confidence 234576655 58999999998644
No 225
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.80 E-value=0.00011 Score=63.38 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=63.6
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
+.++.||++.|||-+ .+|+.+|..|... ++.|.++.... .++.+.+++||+|+.+++
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvG---- 213 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALG---- 213 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccC----
Confidence 457999999999965 5899999999876 68888886422 367888999999999997
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
..+++..+. .|+|+++||++--.
T Consensus 214 kp~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 214 QPEFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred CcCccCHHH---cCCCCEEEEecCcc
Confidence 234576655 58999999998643
No 226
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.79 E-value=0.00014 Score=59.60 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=50.6
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhcCceec--CCHHhhcCCCCEEEEeCCCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLT 103 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~ 103 (221)
.+|.|++|.|||.|.+|...++.|...|++|.++++..... +.+....+... .-.++.+..+|+|+.++...
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence 47999999999999999999999999999999998754221 11111112211 11234578899998888743
No 227
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.79 E-value=9.8e-05 Score=63.82 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=63.7
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHcc----CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
+.++.||++.|||-+ .+|+.+|..|.. .+..|..+.... .++++.+++||+|+.+++..
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~-- 217 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA-- 217 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc--
Confidence 457999999999965 589999999876 578888776532 25788899999999999622
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+++..+.+ |+|+++||++-..
T Consensus 218 --~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 218 --RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred --CccCHHHc---CCCCEEEEeeccc
Confidence 56877775 8999999997443
No 228
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.78 E-value=0.00019 Score=62.34 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=73.8
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-cCceec-----------CCHHhhcCCCCEEEEeCCCC
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE-----------EDLDTMLPKCDIVVVNTPLT 103 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~-----------~~l~ell~~aDvVv~~~p~~ 103 (221)
-++|+|+|.|.||.-+|-.|...|.+|.+++|.....+...+ .|+... ....+....+|+|++|+...
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 368999999999999999999999999999986433332222 122110 01112245789999999732
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~l 152 (221)
++...+ +.....+.+++.+|-.-- ++-.++.+.+.+.+.++.++..
T Consensus 82 -~~~~al-~~l~~~l~~~t~vv~lQN-Gv~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 82 -DAEPAV-ASLAHRLAPGAELLLLQN-GLGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred -hHHHHH-HHHHhhCCCCCEEEEEeC-CCCCHHHHHHhCCCCcEEEEEe
Confidence 333332 345566778888877644 4556677777776666654433
No 229
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.77 E-value=0.00011 Score=55.03 Aligned_cols=87 Identities=18% Similarity=0.282 Sum_probs=51.5
Q ss_pred EEEEEc-cCHHHHHHHHHHccC-CCe-EEEEcCCC-CChhHHHhcC-------ceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577 38 TVGTVG-CGRIGKLLLQRLKPF-NCN-LLYHDRVK-MDPQLEKETG-------AKFEEDLDTMLPKCDIVVVNTPLTEKT 106 (221)
Q Consensus 38 ~vgIIG-~G~iG~~iA~~l~~~-G~~-V~~~d~~~-~~~~~~~~~g-------~~~~~~l~ell~~aDvVv~~~p~~~~t 106 (221)
||+||| .|.+|+.+++.|... .++ +.+++++. .........+ ....+...+.+.++|+|++|+|.. .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~--~ 78 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG--A 78 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH--H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh--H
Confidence 699999 999999999999763 445 44455544 1111111111 111111234459999999999922 2
Q ss_pred hhcchHHHHhcCCCCCEEEEcCC
Q 027577 107 RGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
..-+.... +++|..+|+.|.
T Consensus 79 ~~~~~~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 79 SKELAPKL---LKAGIKVIDLSG 98 (121)
T ss_dssp HHHHHHHH---HHTTSEEEESSS
T ss_pred HHHHHHHH---hhCCcEEEeCCH
Confidence 22222222 578999999874
No 230
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.77 E-value=0.00016 Score=62.37 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=33.9
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCC
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK 69 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~ 69 (221)
.+.++++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 57799999999999999999999999996 99999975
No 231
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.77 E-value=8.2e-05 Score=63.24 Aligned_cols=171 Identities=13% Similarity=0.080 Sum_probs=94.3
Q ss_pred EEEEcc-CHHHHHHHHHHccCC----CeEEEEcCCCCChhHH--------H---hcCceecCCHHhhcCCCCEEEEeCCC
Q 027577 39 VGTVGC-GRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLE--------K---ETGAKFEEDLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 39 vgIIG~-G~iG~~iA~~l~~~G----~~V~~~d~~~~~~~~~--------~---~~g~~~~~~l~ell~~aDvVv~~~p~ 102 (221)
|+|||. |.+|..+|..+...| .+|..+|.++...+.. . ...+...+++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999988777 6899999865332211 0 11233445667889999999996531
Q ss_pred C--h---------hhhhcch--HHHHhcCCCCCEEEEcCCCCccCHH--HHHHH--HHhCCceEEE-eeCCCCCCCCC--
Q 027577 103 T--E---------KTRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQ--AVVDA--CSSGHIAGYS-GDVWNPQPAPK-- 162 (221)
Q Consensus 103 ~--~---------~t~~~i~--~~~~~~mk~ga~lIn~srg~~vd~~--al~~a--l~~g~i~~a~-lDV~~~ep~~~-- 162 (221)
. + .+..++. .+.+....|++++||.+ .++|.- .+.+. +...++.|.+ +|...-.-.-.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~la~~ 158 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEK 158 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchHHHHHHHHHHH
Confidence 1 0 1111111 12334456899999995 555533 34444 4567788888 77532100000
Q ss_pred -CCCCCCC-CCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCccccc
Q 027577 163 -DHPWRYM-PNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQNYIV 211 (221)
Q Consensus 163 -~~~l~~~-~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n~v~ 211 (221)
+-+--+. -.++--.|-.....- .+.+..+.+.+++++.++.. .+++.++
T Consensus 159 l~v~~~~v~~~v~G~hg~~~~~~~s~~~~a~~~~~ii~ai~~~~~~~~~v~v~~ 212 (263)
T cd00650 159 LGVDPDDVKVYILGEHGGSQVPDWSTVRIATSIADLIRSLLNDEGEILPVGVRN 212 (263)
T ss_pred hCCCccceEEEEEEcCCCceEeccccchHHHHHHHHHHHHHcCCCEEEEEEEEe
Confidence 0000000 011222222111000 12566677888888887655 5556554
No 232
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.00018 Score=63.09 Aligned_cols=124 Identities=12% Similarity=0.139 Sum_probs=98.1
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----cCceecCCHHhhc---CCCCEEEEeCCCChhhh
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTML---PKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~ell---~~aDvVv~~~p~~~~t~ 107 (221)
-..||+||++-||+.++-.....|+.|.+|+|+....+.+.. ..+....++++++ +.-.+|++.+.......
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD 85 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD 85 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence 357999999999999999999999999999998654432211 1133345788775 56778888876555554
Q ss_pred hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577 108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~ 160 (221)
.+| +++...|.+|-+||+-+...--|+..-.+.|....|-..+.-|...|.-
T Consensus 86 ~~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEG 137 (487)
T KOG2653|consen 86 QFI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEG 137 (487)
T ss_pred HHH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccc
Confidence 444 4677889999999999999999999999999999999899999887753
No 233
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.76 E-value=0.00011 Score=53.95 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=57.2
Q ss_pred HHHHHHHHHHccCCCeEEEEcCCCCChhHHH---hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCC
Q 027577 46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122 (221)
Q Consensus 46 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~---~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga 122 (221)
+-+..+++.|+..|++|.+|||.-....... ..++...+++++.++.+|+|+++++. ++...+-..+....|+++.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~~~~~~~~~~~~ 95 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDH-DEFRELDWEEIAKLMRKPP 95 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSE
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecC-HHHhccCHHHHHHhcCCCC
Confidence 3577899999999999999999653322222 14677778999999999999999983 3344443455667788899
Q ss_pred EEEEc
Q 027577 123 LIVNN 127 (221)
Q Consensus 123 ~lIn~ 127 (221)
+||++
T Consensus 96 ~iiD~ 100 (106)
T PF03720_consen 96 VIIDG 100 (106)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99987
No 234
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.76 E-value=0.00044 Score=62.97 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=76.4
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEE--------EcCCCCChhHH---H---------------hc-Cceec
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY--------HDRVKMDPQLE---K---------------ET-GAKFE 83 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~--------~d~~~~~~~~~---~---------------~~-g~~~~ 83 (221)
+.+|.|+||.|-|+|++|+..|+.|...|++|++ ||+.....+.. . .. +.+.+
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 3479999999999999999999999999999998 77654333221 0 11 33333
Q ss_pred CCHHhhc-CCCCEEEEeCCCChhhhhcchHHHHhcCC-CCC-EEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577 84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (221)
Q Consensus 84 ~~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk-~ga-~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~ 155 (221)
+.++++ .+|||++-|. +.+.|+.+....+. .++ +|+-.+-+ ++..++- +.|.+..|. .+=|+.
T Consensus 303 -~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~ 368 (445)
T PRK14030 303 -AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKA 368 (445)
T ss_pred -CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcce
Confidence 334444 4699888776 46678777766662 234 55555555 6666544 666666666 344443
No 235
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.75 E-value=0.00016 Score=62.59 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=63.2
Q ss_pred ccCCCCCEEEEEccC-HHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
+.++.||++.|||-+ .+|+.+|..|... ++.|..+.... .++++..++||+|+.++.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvG---- 213 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAG---- 213 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----
Confidence 457999999999965 5899999999766 78888876421 367888999999999886
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
-.+++..+. +|+|+++||++-..
T Consensus 214 kp~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 214 VPELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred CcCccCHHH---cCCCCEEEEccccc
Confidence 234677655 58999999998544
No 236
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.73 E-value=0.00014 Score=59.69 Aligned_cols=91 Identities=20% Similarity=0.127 Sum_probs=59.2
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhc-Cceec--CCHHhhcCCCCEEEEeCCCChhhh
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKET-GAKFE--EDLDTMLPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~-g~~~~--~~l~ell~~aDvVv~~~p~~~~t~ 107 (221)
.+|.|++|.|||.|.+|..-++.|...|++|.++++...+. ....+. .+... .--.+.+..+|+|+.++...+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~--- 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE--- 81 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH---
Confidence 36899999999999999999999999999999999864321 111122 23221 111345788999888876322
Q ss_pred hcchHHHHhcCCCCCEEEEc
Q 027577 108 GMFDKDRIAKMKKGVLIVNN 127 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~ 127 (221)
++.......+.-.++||+
T Consensus 82 --ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 82 --LNRRVAHAARARGVPVNV 99 (205)
T ss_pred --HHHHHHHHHHHcCCEEEE
Confidence 233333334444566665
No 237
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.73 E-value=0.00012 Score=55.23 Aligned_cols=102 Identities=22% Similarity=0.262 Sum_probs=61.2
Q ss_pred CEEEEEcc-CHHHHHHHHHHcc-CCCeE-EEEcCCCCC---hhH-----HHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKP-FNCNL-LYHDRVKMD---PQL-----EKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~-~G~~V-~~~d~~~~~---~~~-----~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
++|+|+|+ |+||+.+++.+.. -++++ .+++++... .+. ....++...++++++++++|+|+-.+ +|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence 48999999 9999999999987 68884 456775411 111 11345666789999999999998776 343
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~ 143 (221)
.-.-.-+. .++.+..+|-...|---.+.+.++.+.
T Consensus 79 ~~~~~~~~---~~~~g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 79 AVYDNLEY---ALKHGVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp HHHHHHHH---HHHHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred HhHHHHHH---HHhCCCCEEEECCCCCHHHHHHHHHHh
Confidence 32212122 234477777777776433434444443
No 238
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.73 E-value=0.00026 Score=64.57 Aligned_cols=116 Identities=16% Similarity=0.279 Sum_probs=72.7
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEE-cCCC-------CChhHHH----h-------c----CceecCCHH
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRVK-------MDPQLEK----E-------T----GAKFEEDLD 87 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~-d~~~-------~~~~~~~----~-------~----g~~~~~~l~ 87 (221)
+.+|.|+||+|.|+|++|+.+|+.|..+|++|+++ |.+. ...+... . + +.+.. +.+
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~ 305 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGG 305 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCc
Confidence 34689999999999999999999999999998877 5221 1111110 0 0 12222 344
Q ss_pred hhcC-CCCEEEEeCCCChhhhhcchHHHHhcCC-CCC-EEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577 88 TMLP-KCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (221)
Q Consensus 88 ell~-~aDvVv~~~p~~~~t~~~i~~~~~~~mk-~ga-~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~ 155 (221)
+++. +|||++-|.. .+.++.+....++ +++ +|+-.+-+.+ ..+ -.+.|.++.|. .+=|+.
T Consensus 306 ~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~-~vPD~l 368 (445)
T PRK09414 306 SPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL-FAPGKA 368 (445)
T ss_pred cccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE-EECchh
Confidence 4444 6999998886 4556666555552 234 5555555665 443 55677777666 334433
No 239
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=97.72 E-value=0.00023 Score=60.04 Aligned_cols=114 Identities=22% Similarity=0.277 Sum_probs=75.9
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEE--------cCCCCChhHHH----hcCc--eecC----------CHH-
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQLEK----ETGA--KFEE----------DLD- 87 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~--------d~~~~~~~~~~----~~g~--~~~~----------~l~- 87 (221)
++.|+|+.|-|+|++|+.+|+.|...|++|++. |+.....+... +.+. ..+. +-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 589999999999999999999999999997765 54332222111 1222 1111 221
Q ss_pred hhc-CCCCEEEEeCCCChhhhhcchHHHHh-cCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577 88 TML-PKCDIVVVNTPLTEKTRGMFDKDRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (221)
Q Consensus 88 ell-~~aDvVv~~~p~~~~t~~~i~~~~~~-~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD 153 (221)
+++ .+||+++-|.- .+.|+.+... .+++++-+|--+.-..+..++.. .|.+..|. ..=|
T Consensus 109 ~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~-viPD 169 (244)
T PF00208_consen 109 EILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL-VIPD 169 (244)
T ss_dssp HGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E-EE-H
T ss_pred ccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE-EEcc
Confidence 555 57999999853 4668887777 77777777766666666666665 78877776 3444
No 240
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.72 E-value=0.00012 Score=59.89 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=46.0
Q ss_pred CEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~ 115 (221)
++|+|||. |.||+.+++.++..|+.|. +++||+|++|+|-. .+.. .+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~-~~~~-----~i 48 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPID-AALN-----YI 48 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHH-HHHH-----HH
Confidence 48999997 9999999999999999885 36899999999922 2222 23
Q ss_pred hcCCCCCEEEEcCCCC
Q 027577 116 AKMKKGVLIVNNARGA 131 (221)
Q Consensus 116 ~~mk~ga~lIn~srg~ 131 (221)
+.+. .+++|++.-+
T Consensus 49 ~~~~--~~v~Dv~SvK 62 (197)
T PRK06444 49 ESYD--NNFVEISSVK 62 (197)
T ss_pred HHhC--CeEEeccccC
Confidence 3333 3788998644
No 241
>PLN02477 glutamate dehydrogenase
Probab=97.71 E-value=0.00054 Score=61.94 Aligned_cols=114 Identities=19% Similarity=0.305 Sum_probs=74.5
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEE-EcCC-------CCChhHHHh----c-------CceecCCHHhh-c
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRV-------KMDPQLEKE----T-------GAKFEEDLDTM-L 90 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~-~d~~-------~~~~~~~~~----~-------g~~~~~~l~el-l 90 (221)
+.+|.|+||+|.|+|++|+.+|+.|...|.+|++ .|.+ ....+...+ . +.+.+ +.+++ .
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~ 279 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILV 279 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCcccee
Confidence 3478999999999999999999999999999884 4443 111221111 0 11222 23333 3
Q ss_pred CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577 91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 154 (221)
Q Consensus 91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV 154 (221)
.+||+++-|.- .+.|+.+....++ -.+|+-.+-+.+ .. +-.+.|++..|. .+=|+
T Consensus 280 ~~~DvliP~Al-----~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~-~~PD~ 334 (410)
T PLN02477 280 EPCDVLIPAAL-----GGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVV-VLPDI 334 (410)
T ss_pred ccccEEeeccc-----cccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcE-EEChH
Confidence 57999987753 5578888877775 356666666766 44 345778887776 33443
No 242
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.71 E-value=9.8e-05 Score=63.56 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=50.9
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhH-HHhcC----ceecC---CHHhhcCCCCEEEEeCCC
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKETG----AKFEE---DLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~~~~g----~~~~~---~l~ell~~aDvVv~~~p~ 102 (221)
.+.++++.|||.|.+|++++..|...|+ +|.+++|+..+.+. +...+ +.... ++.+.+.++|+||.|+|.
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 4679999999999999999999999998 59999997543332 22221 11121 233556789999999984
No 243
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.00014 Score=60.66 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=50.5
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--cCceec-------CCHHhh-cCCCCEEEEeCCCChh
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--TGAKFE-------EDLDTM-LPKCDIVVVNTPLTEK 105 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--~g~~~~-------~~l~el-l~~aDvVv~~~p~~~~ 105 (221)
|++.|||+|.+|+.+|+.|...|++|+++|+.+...+.... .+...+ +.|+++ +.++|+++.++..+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 68999999999999999999999999999987644333112 333211 234444 6789999999985443
No 244
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=97.66 E-value=0.00044 Score=54.47 Aligned_cols=94 Identities=17% Similarity=0.324 Sum_probs=67.2
Q ss_pred CCCEEEEEc--cCHHHHHHHHHHccCCCeEEEEcCCC--CCh--hHH-------HhcC--ceecCCHHhhcCCCCEEEEe
Q 027577 35 EGKTVGTVG--CGRIGKLLLQRLKPFNCNLLYHDRVK--MDP--QLE-------KETG--AKFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 35 ~g~~vgIIG--~G~iG~~iA~~l~~~G~~V~~~d~~~--~~~--~~~-------~~~g--~~~~~~l~ell~~aDvVv~~ 99 (221)
.|+||++|| .+++.++++..+..+|+++.++.+.. -.. +.. ...| +....++++.++++|+|...
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 488999999 38999999999999999999998865 122 111 1223 45568999999999999887
Q ss_pred CCC----Chh-------hhhcchHHHHhcCCCCCEEEEcC
Q 027577 100 TPL----TEK-------TRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 100 ~p~----~~~-------t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
.-. .+. ....++.+.++.++++++|+.+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 653 111 11346778888888888888764
No 245
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.65 E-value=0.0001 Score=63.93 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=59.8
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhcCceec----CC---HHhhcCCCCEEEEeCCCChhh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFE----ED---LDTMLPKCDIVVVNTPLTEKT 106 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~----~~---l~ell~~aDvVv~~~p~~~~t 106 (221)
.|+.+||+|+|.+|.--.+.+++||++|+++|++. .+.+..+.+|.+.+ .+ .+++...-|.++-+++.- .
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence 79999999999999999999999999999999876 44455555776422 11 123445556665555421 1
Q ss_pred hhcchHHHHhcCCCCCEEEEc
Q 027577 107 RGMFDKDRIAKMKKGVLIVNN 127 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~ 127 (221)
.+-+ +..++.||++..+|-+
T Consensus 259 ~~~~-~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 259 EHAL-EPLLGLLKVNGTLVLV 278 (360)
T ss_pred ccch-HHHHHHhhcCCEEEEE
Confidence 2222 3455667776666654
No 246
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.64 E-value=0.00046 Score=63.22 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=71.8
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhcCceec--CCHHhhcCCCCEEEEeCCCChh
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~~~ 105 (221)
-+.+++|+|+|+|..|.++|+.|+..|++|.++|.+.... +.+...|+... ....+.+.++|+|+.. |.-+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 3668999999999999999999999999999999764211 22445566542 2234556889999887 43322
Q ss_pred hhhc-----------chH-HHHhcC-CCCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577 106 TRGM-----------FDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGH 146 (221)
Q Consensus 106 t~~~-----------i~~-~~~~~m-k~ga~lIn~srg~~vd~~al~~al~~g~ 146 (221)
+... +.+ +.+... +...+-|.-+.|+--..+-+...|+...
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 2111 111 122222 2234556666788777776777776533
No 247
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.63 E-value=0.0004 Score=60.38 Aligned_cols=95 Identities=18% Similarity=0.183 Sum_probs=60.1
Q ss_pred CEEEEEccCHHHHHHHHHHccCC--CeEEEEcCCCCChhH-HHhc-------C--ce-ecCCHHhhcCCCCEEEEeCCCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKET-------G--AK-FEEDLDTMLPKCDIVVVNTPLT 103 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~-~~~~-------g--~~-~~~~l~ell~~aDvVv~~~p~~ 103 (221)
++|+|||.|.+|+.+|..|...| .+|.++|++....+. +.++ + .. ...+.+ .+++||+|++++...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~-~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS-DCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH-HhCCCCEEEEccCCC
Confidence 48999999999999999998888 479999987643221 1111 1 11 123444 578999999998642
Q ss_pred hh---h--------hhcch--HHHHhcCCCCCEEEEcCCCCccC
Q 027577 104 EK---T--------RGMFD--KDRIAKMKKGVLIVNNARGAIMD 134 (221)
Q Consensus 104 ~~---t--------~~~i~--~~~~~~mk~ga~lIn~srg~~vd 134 (221)
.. + ..++. .+.+....+.+++|+++ .++|
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d 121 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVD 121 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHH
Confidence 11 1 11111 12234456788999987 4444
No 248
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.61 E-value=0.0006 Score=58.93 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=48.6
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCC---Chh-HHHhcC------ceecCCH------HhhcCCCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM---DPQ-LEKETG------AKFEEDL------DTMLPKCD 94 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~---~~~-~~~~~g------~~~~~~l------~ell~~aD 94 (221)
.++.++++.|+|.|..+++++..|...|. +|.+++|+.. +.+ .++..+ +.. .++ .+.+.++|
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aD 198 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASAD 198 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccCC
Confidence 45789999999999999999999988887 6999999753 111 222221 111 122 23456789
Q ss_pred EEEEeCCC
Q 027577 95 IVVVNTPL 102 (221)
Q Consensus 95 vVv~~~p~ 102 (221)
+|+.++|.
T Consensus 199 ivINaTp~ 206 (288)
T PRK12749 199 ILTNGTKV 206 (288)
T ss_pred EEEECCCC
Confidence 99998883
No 249
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.61 E-value=0.00041 Score=60.19 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=59.8
Q ss_pred CCEEEEEccCHHHHHHHHHHcc-CCCeEE-EEcCCCCCh--hHHHhcCcee-cCCHHhhcC-----CCCEEEEeCCCChh
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRVKMDP--QLEKETGAKF-EEDLDTMLP-----KCDIVVVNTPLTEK 105 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~-~G~~V~-~~d~~~~~~--~~~~~~g~~~-~~~l~ell~-----~aDvVv~~~p~~~~ 105 (221)
..+|||||.|+||+.++..+.. -++++. ++|+++... ..+++.|+.. +.+.+++++ +.|+|+.++|. .
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a--~ 81 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSA--G 81 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCH--H
Confidence 4689999999999997777654 356754 566655322 4456678765 467888884 58999999983 2
Q ss_pred hhhcchHHHHhcCCCCCEEEEcC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
...-. .....+.|..+|+-+
T Consensus 82 ~H~e~---a~~a~eaGk~VID~s 101 (302)
T PRK08300 82 AHVRH---AAKLREAGIRAIDLT 101 (302)
T ss_pred HHHHH---HHHHHHcCCeEEECC
Confidence 22112 223356788888876
No 250
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.60 E-value=0.0003 Score=62.23 Aligned_cols=65 Identities=28% Similarity=0.355 Sum_probs=44.3
Q ss_pred CEEEEEccCHHHHHHHHHHcc-CCCeEEEE-cCCCCChh-HHHh------------------cCceecCCHHhhcCCCCE
Q 027577 37 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYH-DRVKMDPQ-LEKE------------------TGAKFEEDLDTMLPKCDI 95 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~-~G~~V~~~-d~~~~~~~-~~~~------------------~g~~~~~~l~ell~~aDv 95 (221)
.+|||+|+|.||+.+++.+.. -++++.+. |+++.... .+.. .++....++++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 489999999999999998864 46786665 43321111 1111 123334567888889999
Q ss_pred EEEeCC
Q 027577 96 VVVNTP 101 (221)
Q Consensus 96 Vv~~~p 101 (221)
|+.|+|
T Consensus 82 VIdaT~ 87 (341)
T PRK04207 82 VVDATP 87 (341)
T ss_pred EEECCC
Confidence 999998
No 251
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.60 E-value=0.00029 Score=61.43 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=66.2
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHcc-------CCCeEEEEcCCCC--C--hhHHHh-----------------cCceecC
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKP-------FNCNLLYHDRVKM--D--PQLEKE-----------------TGAKFEE 84 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~-------~G~~V~~~d~~~~--~--~~~~~~-----------------~g~~~~~ 84 (221)
+-.-++|+|||.|++|+++|+.+.. |..+|..|-.... . ....+- .++..+.
T Consensus 18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 3456799999999999999998853 2334554433221 1 111111 0234568
Q ss_pred CHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 85 ~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
++.+++.+||+++..+|.+ -..-+-++...+.|+++..|+...|=
T Consensus 98 dl~ea~~dADilvf~vPhQ--f~~~ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 98 DLVEAAKDADILVFVVPHQ--FIPRICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred hHHHHhccCCEEEEeCChh--hHHHHHHHHhcccCCCCeEEEeecce
Confidence 9999999999999999932 22224567888899999999998873
No 252
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.59 E-value=0.00028 Score=61.92 Aligned_cols=66 Identities=20% Similarity=0.341 Sum_probs=47.5
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-----HHHh---c----CceecCCHHhhcCCCCEEEEeC
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---T----GAKFEEDLDTMLPKCDIVVVNT 100 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----~~~~---~----g~~~~~~l~ell~~aDvVv~~~ 100 (221)
+..+||+|||.|.||..+|..+...|. +|.++|.++.... .... . .+....++ +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 445799999999999999999887785 8999998764221 1111 1 12333566 4679999999976
No 253
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.59 E-value=0.00024 Score=64.35 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=65.4
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhh--------
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR-------- 107 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~-------- 107 (221)
.++|.|||+|.+|.++|+.|+..|++|.++|++..........+-......+...+++|+|+.+.+..+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 468999999999999999999999999999976532211110000111233444578999888775433211
Q ss_pred --hcchH-HH-Hhc--C-CCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 108 --GMFDK-DR-IAK--M-KKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 108 --~~i~~-~~-~~~--m-k~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
.++.+ +. +.. + +...+=|--+.|+--..+-+...|+.
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 12222 11 111 1 11235566667877766667777765
No 254
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.57 E-value=0.00019 Score=63.29 Aligned_cols=63 Identities=22% Similarity=0.382 Sum_probs=47.7
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc--eec---CCHHhhcCCCCEEEE
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA--KFE---EDLDTMLPKCDIVVV 98 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~--~~~---~~l~ell~~aDvVv~ 98 (221)
++||||||-|..|+.++...+.+|+++++.|+.+..+...-...+ ..+ ..+.++++.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 479999999999999999999999999999987654432111111 112 247788999999987
No 255
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.56 E-value=0.0007 Score=59.20 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=46.4
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh----cCcee-cCCHHhhcCCCCEEEEeCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE----TGAKF-EEDLDTMLPKCDIVVVNTP 101 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~----~g~~~-~~~l~ell~~aDvVv~~~p 101 (221)
.++||+|||.|.+|..+|..+...|. ++..+|++....+ .... ..+.. ..+. +.+++||+|+++.-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecC
Confidence 46799999999999999999988887 7999998653221 1111 01111 2333 55899999999764
No 256
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.55 E-value=0.00021 Score=64.92 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=51.2
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-cCceec-------CCHHhh-cCCCCEEEEeCCCChh
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE-------EDLDTM-LPKCDIVVVNTPLTEK 105 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~-------~~l~el-l~~aDvVv~~~p~~~~ 105 (221)
|+|.|+|+|.+|+.+++.|...|++|.++|+++...+.+++ .++... ..++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 57999999999999999999999999999987654444433 343221 234445 7889999999985443
No 257
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.53 E-value=0.00041 Score=61.42 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=54.3
Q ss_pred CEEEEEcc-CHHHHHHHHHHccC-CCeEE-EEcCCCCChh-HHHhc----Cc--eecC--CHHhhcCCCCEEEEeCCCCh
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKET----GA--KFEE--DLDTMLPKCDIVVVNTPLTE 104 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~-~~~~~----g~--~~~~--~l~ell~~aDvVv~~~p~~~ 104 (221)
++|+|+|. |.+|+.+++.|..+ +.++. +++++....+ ..... +. ..+. +.+++++++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 48999998 99999999999877 66777 4454321111 11111 11 0111 4566667899999999932
Q ss_pred hhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 105 KTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
....+. .. ..+.|..+|+.|.
T Consensus 80 ~s~~~~-~~---~~~~G~~VIDlS~ 100 (346)
T TIGR01850 80 VSAELA-PE---LLAAGVKVIDLSA 100 (346)
T ss_pred HHHHHH-HH---HHhCCCEEEeCCh
Confidence 222221 11 2356899999983
No 258
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.53 E-value=0.00054 Score=59.06 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=57.1
Q ss_pred CEEEEEccCHHHHHHHHHHc-cCCCeEE-EEcCCCCC--hhHHHhcCcee-cCCHHhhcC--CCCEEEEeCCCChhhhhc
Q 027577 37 KTVGTVGCGRIGKLLLQRLK-PFNCNLL-YHDRVKMD--PQLEKETGAKF-EEDLDTMLP--KCDIVVVNTPLTEKTRGM 109 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~-~~G~~V~-~~d~~~~~--~~~~~~~g~~~-~~~l~ell~--~aDvVv~~~p~~~~t~~~ 109 (221)
.+|||||.|+||+.++..+. .-++++. ++|+++.+ ...+++.|+.. ..+.+++++ +.|+|++++|.. ++.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~--~H~- 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAK--AHA- 78 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcH--HHH-
Confidence 47999999999999876665 3456755 46766543 24566677753 457888885 588999999933 221
Q ss_pred chHHHHhcCCCCCEEEEcC
Q 027577 110 FDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 110 i~~~~~~~mk~ga~lIn~s 128 (221)
+-....++.|..+++-.
T Consensus 79 --e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 79 --RHARLLAELGKIVIDLT 95 (285)
T ss_pred --HHHHHHHHcCCEEEECC
Confidence 12233355677775544
No 259
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.51 E-value=0.0019 Score=58.96 Aligned_cols=111 Identities=20% Similarity=0.267 Sum_probs=71.6
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHH---H-----------h-----cCceec
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLE---K-----------E-----TGAKFE 83 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~---~-----------~-----~g~~~~ 83 (221)
+.+|.|+||.|-|+|++|+..|+.|...|.+|+ +.|.+ ....+.. . . .+.+.+
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 457999999999999999999999999999988 44443 1111111 0 0 022333
Q ss_pred CCHHhhc-CCCCEEEEeCCCChhhhhcchHHHHhcC-CCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 84 ~~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~m-k~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
+.++++ -.||+.+-|. +.+.|+.+....+ +.++.+|--+....+..+| .+.|++..|.
T Consensus 312 -~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA-~~~L~~~GI~ 371 (454)
T PTZ00079 312 -PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTIEA-THLFKKNGVI 371 (454)
T ss_pred -CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCHHH-HHHHHHCCcE
Confidence 223333 4699988775 4566777766655 5566676666655666644 4566666665
No 260
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.51 E-value=0.00081 Score=59.51 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=74.4
Q ss_pred CCEEEEEccCHHHHHHHHHHccC--CCeEE-EEcCCCCC-hhHHHhcCceecCCHHhhcCCCCEEEEeCCCC-hhhhhcc
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT-EKTRGMF 110 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~--G~~V~-~~d~~~~~-~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~-~~t~~~i 110 (221)
-.+|||||+ .+|+..++.++.. ++++. ++|++... .+.++++|+..+.++++++++.|++++++|.+ +...|
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H-- 79 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQG-- 79 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccH--
Confidence 368999999 6899999988765 47754 56776533 34556678877889999999999999998732 21111
Q ss_pred hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 027577 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150 (221)
Q Consensus 111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a 150 (221)
.+-..+.|+.|..++.=-=-..-+.++|.++.++.++...
T Consensus 80 ~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 80 SALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2223445566655554322223456668888888777733
No 261
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.50 E-value=0.00089 Score=58.07 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=44.4
Q ss_pred CEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhH-H----Hh---cC----ceecCCHHhhcCCCCEEEEeC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-E----KE---TG----AKFEEDLDTMLPKCDIVVVNT 100 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~----~~---~g----~~~~~~l~ell~~aDvVv~~~ 100 (221)
+||+|||.|.||..+|..+...|. +|.++|+++...+. . .. .+ +....+.+ .+++||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECC
Confidence 689999999999999999987664 89999986532211 1 11 01 11224554 579999999986
No 262
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.50 E-value=0.00079 Score=52.98 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=48.5
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC-ceec-CCH-HhhcCCCCEEEEeCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-AKFE-EDL-DTMLPKCDIVVVNTP 101 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g-~~~~-~~l-~ell~~aDvVv~~~p 101 (221)
.+|+|++|.|||.|.+|...++.|...|++|.++++.. ..+ ..+++ +... ..+ ++-+.++|+|+.++.
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~-~~~-l~~l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI-CKE-MKELPYITWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc-CHH-HHhccCcEEEecccChhcCCCceEEEECCC
Confidence 47999999999999999999999999999999997642 222 22222 1110 111 234678899888876
No 263
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00079 Score=57.97 Aligned_cols=96 Identities=18% Similarity=0.234 Sum_probs=60.3
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHH-HhcC---c-eecCCHHhh--cCCCCEEEEeCCCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETG---A-KFEEDLDTM--LPKCDIVVVNTPLT 103 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~-~~~g---~-~~~~~l~el--l~~aDvVv~~~p~~ 103 (221)
....|+++.|+|.|..+++++..|+..|. +|.+++|+..+.+.+ +..+ . .......++ ..++|+||.++|..
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 35568999999999999999999999996 699999976443322 2222 1 001122222 22699999999954
Q ss_pred hhhh--h-cchHHHHhcCCCCCEEEEcCCC
Q 027577 104 EKTR--G-MFDKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 104 ~~t~--~-~i~~~~~~~mk~ga~lIn~srg 130 (221)
-.-. . .+. ...++++.++.++--.
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~ 228 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVYN 228 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEeccC
Confidence 3321 1 222 3445666666665433
No 264
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.0011 Score=59.40 Aligned_cols=107 Identities=21% Similarity=0.406 Sum_probs=73.0
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC------------------Ch-hHHHhcCceecCCHHhhc-CC
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM------------------DP-QLEKETGAKFEEDLDTML-PK 92 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~------------------~~-~~~~~~g~~~~~~l~ell-~~ 92 (221)
+|+|+||+|-|+|++|+..|+.|...|.+|++++.+.. .. ......+.+.+.. ++++ .+
T Consensus 204 ~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~~ 282 (411)
T COG0334 204 DLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEVD 282 (411)
T ss_pred CcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccccc
Confidence 48999999999999999999999989999998876543 11 1111224455533 5555 47
Q ss_pred CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCc
Q 027577 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147 (221)
Q Consensus 93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i 147 (221)
||+.+-|. +.+.|+.+....++.. +|+-.+.+.+- .++--..++.|-+
T Consensus 283 cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erGIl 330 (411)
T COG0334 283 CDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERGIL 330 (411)
T ss_pred CcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCCCE
Confidence 99887665 4667888888888765 66666666654 4444444455533
No 265
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.48 E-value=0.00022 Score=64.83 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=46.5
Q ss_pred CEEEEEccCHHHHHHHH---HH---ccCCCeEEEEcCCCCChhHH--------Hhc----CceecCCHHhhcCCCCEEEE
Q 027577 37 KTVGTVGCGRIGKLLLQ---RL---KPFNCNLLYHDRVKMDPQLE--------KET----GAKFEEDLDTMLPKCDIVVV 98 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~---~l---~~~G~~V~~~d~~~~~~~~~--------~~~----g~~~~~~l~ell~~aDvVv~ 98 (221)
.+|+|||.|++|.+.+. .+ ...|.+|..||+++...+.. ... .+....++++.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 47999999999998554 22 34467999999876432211 111 23345688899999999999
Q ss_pred eCC
Q 027577 99 NTP 101 (221)
Q Consensus 99 ~~p 101 (221)
++|
T Consensus 81 ai~ 83 (423)
T cd05297 81 TIQ 83 (423)
T ss_pred eeE
Confidence 998
No 266
>PRK11579 putative oxidoreductase; Provisional
Probab=97.47 E-value=0.00051 Score=60.58 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=45.2
Q ss_pred CEEEEEccCHHHHH-HHHHHcc-CCCeEE-EEcCCCCChhHHHhc-CceecCCHHhhcC--CCCEEEEeCCC
Q 027577 37 KTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPL 102 (221)
Q Consensus 37 ~~vgIIG~G~iG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~ell~--~aDvVv~~~p~ 102 (221)
.+|||||+|.||+. .+..++. -++++. ++|++.. ...... +...+.+++++++ +.|+|++|+|.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~--~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDAT--KVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHH--HHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 48999999999984 5666654 368865 4676532 122223 3455689999996 58999999994
No 267
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.47 E-value=0.0015 Score=56.70 Aligned_cols=111 Identities=13% Similarity=0.196 Sum_probs=77.8
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhh-------
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR------- 107 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~------- 107 (221)
.|++++|||-=.--..+++.|.+.|++|.++.-... + ....|+..+++.+++++++|+|+.-+|.+.+..
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~--~-~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~ 77 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL--D-HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS 77 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc--c-cccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence 378999999999999999999999999987654221 1 123367766678899999999999888643221
Q ss_pred ---hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577 108 ---GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (221)
Q Consensus 108 ---~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~ 155 (221)
--++.+.++.|+++.+++ ++.+. .. +-+.+.+.++. .+|..
T Consensus 78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~--~~~~~ 121 (296)
T PRK08306 78 NEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRK--LVELF 121 (296)
T ss_pred ccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCe--EEEEe
Confidence 113578899999998555 33332 22 44566677777 34544
No 268
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.45 E-value=0.0013 Score=56.11 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=63.8
Q ss_pred CEEEEEc-cCHHHHHHHHHHcc-CCCeEE-EEcCCCC-C--hhHHH-----hcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577 37 KTVGTVG-CGRIGKLLLQRLKP-FNCNLL-YHDRVKM-D--PQLEK-----ETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 37 ~~vgIIG-~G~iG~~iA~~l~~-~G~~V~-~~d~~~~-~--~~~~~-----~~g~~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
.+|+|+| +|.||+.+++.+.. -++++. ++|+... . .+... ..++..+++++++...+|+|+.++| |+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~--p~ 79 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT--PE 79 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC--hH
Confidence 4899999 69999999999874 578855 4674321 1 11111 1345666788888667999999987 33
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA 148 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~srg~~v-d~~al~~al~~g~i~ 148 (221)
.. .+.....++.|.-+|-...|--. +.+.|.++.++..+.
T Consensus 80 ~~---~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~ 120 (266)
T TIGR00036 80 GV---LNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIA 120 (266)
T ss_pred HH---HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCcc
Confidence 22 22233345566555554445322 233355555554443
No 269
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.44 E-value=0.00096 Score=61.06 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=70.7
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeC--CCC-h----h
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT--PLT-E----K 105 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~--p~~-~----~ 105 (221)
++.|++|.|+|+|..|.++|+.|...|++|.++|............|+.....-.+.+.++|+|+..- |.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 47799999999999999999999999999999996533222234456653221123356899887643 211 1 1
Q ss_pred hh---h----cchH-HHHhc-C-----CCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577 106 TR---G----MFDK-DRIAK-M-----KKGVLIVNNARGAIMDTQAVVDACSSG 145 (221)
Q Consensus 106 t~---~----~i~~-~~~~~-m-----k~ga~lIn~srg~~vd~~al~~al~~g 145 (221)
.. . ++.+ +.+.. + +...+-|.-+.|+--...-|...|+..
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 11 0 1221 22222 2 223455666788888777777778753
No 270
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.44 E-value=0.00067 Score=49.94 Aligned_cols=86 Identities=23% Similarity=0.290 Sum_probs=57.1
Q ss_pred EEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHHh----hcCCCCEEEEeCCCChhhhhcc
Q 027577 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKTRGMF 110 (221)
Q Consensus 39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e----ll~~aDvVv~~~p~~~~t~~~i 110 (221)
|.|+|+|.+|+.+++.|+..+.+|+++|.++...+.+.+.++..+ .+.+. -++++|.|+++++....+ +.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence 569999999999999999977799999987655555666665422 22222 247899999999844433 23
Q ss_pred hHHHHhcCCCCCEEEE
Q 027577 111 DKDRIAKMKKGVLIVN 126 (221)
Q Consensus 111 ~~~~~~~mk~ga~lIn 126 (221)
-...++.+.+...++-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 2334455555555553
No 271
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.43 E-value=6.3e-05 Score=62.24 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=77.7
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------cC------------------ceecC
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG------------------AKFEE 84 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g------------------~~~~~ 84 (221)
-.=+.|+|||.|.||..+|+.....|+.|..+|.+......+.+ .+ ++..+
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 34567999999999999999999999999999987643221110 00 12235
Q ss_pred CHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEE-EcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577 85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (221)
Q Consensus 85 ~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI-n~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep 159 (221)
+..++++++|+|+=+.--+.+.+.-+-++.-...|+.+++. |+|. +...++..++++... .++|-.|.+-|
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvP 160 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVP 160 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCch
Confidence 66777888888876554333332223333334456777764 4443 456677777766544 47888776544
No 272
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.42 E-value=0.00058 Score=59.16 Aligned_cols=62 Identities=23% Similarity=0.345 Sum_probs=43.0
Q ss_pred EEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-----HHHh---c----CceecCCHHhhcCCCCEEEEeCC
Q 027577 39 VGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---T----GAKFEEDLDTMLPKCDIVVVNTP 101 (221)
Q Consensus 39 vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----~~~~---~----g~~~~~~l~ell~~aDvVv~~~p 101 (221)
|+|||.|.||..+|..+...|. +|+++|+++.... .... . .+....+.+ .+++||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecC
Confidence 6899999999999999886665 9999998754211 1110 0 112234554 5899999999873
No 273
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=97.42 E-value=0.00069 Score=59.61 Aligned_cols=90 Identities=13% Similarity=0.234 Sum_probs=64.1
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCC---CCChhHHHhcCceecCC----HHh--hcCCCCEEEEeCCCChh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV---KMDPQLEKETGAKFEED----LDT--MLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~---~~~~~~~~~~g~~~~~~----l~e--ll~~aDvVv~~~p~~~~ 105 (221)
.|.+|.|+|.|.+|...++.++..|++|++++++ +...+.++++|+..+.. ..+ .....|+|+-++... .
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~ 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP-P 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH-H
Confidence 6899999999999999999999999999999873 33445666777654321 111 123579998888621 1
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
.-.+.++.++++..++.++.
T Consensus 251 ----~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ----LAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ----HHHHHHHHccCCcEEEEEec
Confidence 22456777888888887764
No 274
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.42 E-value=0.00041 Score=64.12 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=70.3
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecC--CHHhhcCCCCEEEEeCCCChhhh----
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE--DLDTMLPKCDIVVVNTPLTEKTR---- 107 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~--~l~ell~~aDvVv~~~p~~~~t~---- 107 (221)
+.|++|.|+|+|..|.+.++.|+..|++|+++|..+...+.+++.|+.... ...+.++++|+|+.+..-.+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 568999999999999999999999999999999754333334455765431 23455678998887653222211
Q ss_pred ------hcchHHHH--hcC------CC-CCEEEEcCCCCccCHHHHHHHHHh
Q 027577 108 ------GMFDKDRI--AKM------KK-GVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 108 ------~~i~~~~~--~~m------k~-ga~lIn~srg~~vd~~al~~al~~ 144 (221)
.++.+-.+ ... ++ ..+-|.-+.|+--...-+.+.|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 11222111 111 02 234466667887777767777765
No 275
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.41 E-value=0.0015 Score=60.33 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=70.8
Q ss_pred CCCCCEEEEEcc----------CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc----------------------Cc
Q 027577 33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----------------------GA 80 (221)
Q Consensus 33 ~l~g~~vgIIG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----------------------g~ 80 (221)
.+.|++|+|+|+ .+-...+++.|...|.+|.+||+.-...+..... ++
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 588999999997 4478889999999999999999863222111111 12
Q ss_pred eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHH
Q 027577 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139 (221)
Q Consensus 81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~ 139 (221)
....+++++++.+|+|++++... +.+.+--+.....|++..+|+|. |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCCh-HhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 44556778999999999999743 33333233445667766689985 43 45655553
No 276
>PRK10206 putative oxidoreductase; Provisional
Probab=97.41 E-value=0.00041 Score=61.29 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=45.5
Q ss_pred EEEEEccCHHHHH-HHHHH-cc-CCCeEE-EEcCCCCChhHHHhcC-ceecCCHHhhcC--CCCEEEEeCCCC
Q 027577 38 TVGTVGCGRIGKL-LLQRL-KP-FNCNLL-YHDRVKMDPQLEKETG-AKFEEDLDTMLP--KCDIVVVNTPLT 103 (221)
Q Consensus 38 ~vgIIG~G~iG~~-iA~~l-~~-~G~~V~-~~d~~~~~~~~~~~~g-~~~~~~l~ell~--~aDvVv~~~p~~ 103 (221)
+|||||+|.+++. .+..+ .. -++++. ++|+++...+.....+ +..+++++++++ +.|+|++++|..
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 7999999998753 45544 32 357765 5787654333444444 556678999995 589999999943
No 277
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.41 E-value=0.00081 Score=67.05 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=55.4
Q ss_pred CCCEEEEEccCHHHHHHHHHHccC-CCe-------------EEEEcCCCCChhHH-Hhc-Cc---ee-cCCHHhhc---C
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPF-NCN-------------LLYHDRVKMDPQLE-KET-GA---KF-EEDLDTML---P 91 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~-G~~-------------V~~~d~~~~~~~~~-~~~-g~---~~-~~~l~ell---~ 91 (221)
..++|+|||+|.||+.+|+.|... +.+ |.+.|++....+.+ +.. ++ .. +.+.+++. +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 477999999999999999999754 333 88888865333322 222 32 22 34555544 6
Q ss_pred CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
++|+|++|+|.. ....+ ....++.|..+++.+
T Consensus 648 ~~DaVIsalP~~--~H~~V---AkaAieaGkHvv~ek 679 (1042)
T PLN02819 648 QVDVVISLLPAS--CHAVV---AKACIELKKHLVTAS 679 (1042)
T ss_pred CCCEEEECCCch--hhHHH---HHHHHHcCCCEEECc
Confidence 899999999942 22112 223334555555554
No 278
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=97.40 E-value=0.0015 Score=56.91 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=51.9
Q ss_pred CCCCCEEEEEcc---CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeC
Q 027577 33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 100 (221)
Q Consensus 33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~ 100 (221)
.+.|+||++||- +++.++++..+..+|+++.+..|....++... ......+++++++++|+|....
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEECC
Confidence 488999999996 69999999999999999999987543222111 2355689999999999997743
No 279
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.40 E-value=0.00088 Score=58.71 Aligned_cols=91 Identities=22% Similarity=0.259 Sum_probs=67.0
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhcC---CCCEEEEeCCCCh
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP---KCDIVVVNTPLTE 104 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~---~aDvVv~~~p~~~ 104 (221)
..|++|.|+|.|.+|...++.++..|. +|++.++++...+.++++|+..+ .+++++.. ..|+|+-++.. +
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~-~ 246 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH-P 246 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC-H
Confidence 368999999999999999999999998 58889887766777778886432 12333332 27898888762 1
Q ss_pred hhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 105 KTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
. .....++.++++..++.++.
T Consensus 247 ~----~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 247 S----SINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H----HHHHHHHHhhcCCEEEEEcc
Confidence 1 12346677899999998874
No 280
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=97.40 E-value=0.002 Score=55.96 Aligned_cols=67 Identities=22% Similarity=0.368 Sum_probs=52.5
Q ss_pred CCCCCEEEEEcc---CHHHHHHHHHHccCCCeEEEEcCCCC--Chh---HHHhcCc--eecCCHHhhcCCCCEEEEe
Q 027577 33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKM--DPQ---LEKETGA--KFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~G~~V~~~d~~~~--~~~---~~~~~g~--~~~~~l~ell~~aDvVv~~ 99 (221)
.+.|.||+++|- +++.++++..+..+|++|.+..|... +.+ .+++.|. ....++++.++.+|+|...
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~ 223 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVT 223 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence 488999999997 59999999999999999999987643 222 2223343 3468999999999999774
No 281
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.40 E-value=0.00055 Score=59.66 Aligned_cols=68 Identities=26% Similarity=0.337 Sum_probs=50.1
Q ss_pred CCEEEEEccCHHHH-HHHHHHccCC--Ce-EEEEcCCCCC-hhHHHhcCce-ecCCHHhhcCC--CCEEEEeCCCC
Q 027577 36 GKTVGTVGCGRIGK-LLLQRLKPFN--CN-LLYHDRVKMD-PQLEKETGAK-FEEDLDTMLPK--CDIVVVNTPLT 103 (221)
Q Consensus 36 g~~vgIIG~G~iG~-~iA~~l~~~G--~~-V~~~d~~~~~-~~~~~~~g~~-~~~~l~ell~~--aDvVv~~~p~~ 103 (221)
-.+|||||+|.++. ..+..++..+ +. +.++|+++.. ...+++.++. .+.+++++++. .|+|++++|..
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 35899999997765 5788887765 34 5567887644 3355667774 67799999976 69999999943
No 282
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.35 E-value=0.00098 Score=57.45 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=49.1
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHH-Hhc----C---ceecC--CHHhhcCCCCEEEEeCC
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KET----G---AKFEE--DLDTMLPKCDIVVVNTP 101 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~-~~~----g---~~~~~--~l~ell~~aDvVv~~~p 101 (221)
.+.++++.|+|.|..|++++..|...|+ +|.++||+..+.+.. ... + +.... +.++.+..+|+|+.++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 5678999999999999999999999997 589999975433322 211 1 11111 12345567899999888
Q ss_pred C
Q 027577 102 L 102 (221)
Q Consensus 102 ~ 102 (221)
.
T Consensus 204 ~ 204 (283)
T PRK14027 204 M 204 (283)
T ss_pred C
Confidence 3
No 283
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.34 E-value=0.00064 Score=55.66 Aligned_cols=93 Identities=20% Similarity=0.240 Sum_probs=60.5
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhcC--c--e--
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKETG--A--K-- 81 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~g--~--~-- 81 (221)
..|.+++|.|||+|.+|..+|+.|...|. ++.++|+..... + ...+.+ + .
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999998 688998762110 0 011111 1 1
Q ss_pred --ec--CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 82 --FE--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 82 --~~--~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
.. .+++++++++|+|+.|+. +.+++..+++...+. +..+|..+
T Consensus 97 ~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~---~ip~i~~~ 143 (202)
T TIGR02356 97 KERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVAL---GTPLISAA 143 (202)
T ss_pred hhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence 11 234567888999888874 566666666554443 33455543
No 284
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.34 E-value=0.0021 Score=56.83 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=69.0
Q ss_pred CEEEEEccCHHHHHHHHHHccC----------CCeEE-EEcCCCC-------ChhH----HHhcCc-e------ecCCHH
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPF----------NCNLL-YHDRVKM-------DPQL----EKETGA-K------FEEDLD 87 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~----------G~~V~-~~d~~~~-------~~~~----~~~~g~-~------~~~~l~ 87 (221)
.+|+|+|+|.||+.+++.+... +++|. ++|++.. ..+. ....+. . ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4799999999999999998654 46654 4564321 1111 111121 1 123778
Q ss_pred hhc--CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCc-cCHHHHHHHHHhCCce
Q 027577 88 TML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA 148 (221)
Q Consensus 88 ell--~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~-vd~~al~~al~~g~i~ 148 (221)
+++ .+.|+|+.|+|....+...-..-....|+.|..+|....+.+ ...++|.++.++..+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence 888 468999999995443322222223556778888887655444 2456788877776665
No 285
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=97.34 E-value=0.0011 Score=55.88 Aligned_cols=96 Identities=14% Similarity=0.214 Sum_probs=74.9
Q ss_pred HHHHHHHHccCCCeEEEEcCCCCC--h---hHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCC
Q 027577 48 GKLLLQRLKPFNCNLLYHDRVKMD--P---QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122 (221)
Q Consensus 48 G~~iA~~l~~~G~~V~~~d~~~~~--~---~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga 122 (221)
|..+|-.+...|++|+..+++..- . +...+.|++.+++-.+.++++.+.++.+|....|.+ |.++.+..+..|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~-Iarei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFG-IAREILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHH-HHHHHHhhCcCCc
Confidence 677888888999999999987532 2 233456888888888999999999999998887766 4567899999999
Q ss_pred EEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 123 LIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 123 ~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
++.|+..-+.+ .|+..| ++.++
T Consensus 112 VicnTCT~sp~---vLy~~L-E~~Lr 133 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL-EGELR 133 (340)
T ss_pred EecccccCchh---HHHHHh-hhhhc
Confidence 99999876544 566666 34443
No 286
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.33 E-value=0.0011 Score=58.62 Aligned_cols=89 Identities=22% Similarity=0.316 Sum_probs=53.7
Q ss_pred CEEEEEcc-CHHHHHHHHHHccC-CCeEEE-EcCCCCChhHHHhcC-ce-----ecCCHHh-hcCCCCEEEEeCCCChhh
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLLY-HDRVKMDPQLEKETG-AK-----FEEDLDT-MLPKCDIVVVNTPLTEKT 106 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~-G~~V~~-~d~~~~~~~~~~~~g-~~-----~~~~l~e-ll~~aDvVv~~~p~~~~t 106 (221)
++|+|+|. |.+|+.+++.+... ++++.. .++...........+ +. .+.++++ ..+++|+|++|+|....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~- 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS- 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence 68999996 99999999999876 677654 554322111111111 10 1223332 45789999999994221
Q ss_pred hhcchHHHHhcCCCCCEEEEcCCC
Q 027577 107 RGMFDKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~srg 130 (221)
.. + ....++.|..+||.|..
T Consensus 82 ~~-~---v~~a~~aG~~VID~S~~ 101 (343)
T PRK00436 82 MD-L---APQLLEAGVKVIDLSAD 101 (343)
T ss_pred HH-H---HHHHHhCCCEEEECCcc
Confidence 11 2 12223578999999844
No 287
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.33 E-value=0.0006 Score=60.20 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=57.8
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCC---------------------hh----HHHhc--Cc--e
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD---------------------PQ----LEKET--GA--K 81 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~---------------------~~----~~~~~--g~--~ 81 (221)
..|++++|.|||+|.+|..+|+.|...|. ++.++|+.... .+ ...+. ++ .
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 46899999999999999999999999998 68888875310 00 01111 11 1
Q ss_pred ec------CCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577 82 FE------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115 (221)
Q Consensus 82 ~~------~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~ 115 (221)
.. .+++++++++|+|+.++ .+.+++.+++.-..
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~ 138 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQ 138 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHH
Confidence 11 34577888999998887 46677766665443
No 288
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.31 E-value=0.0016 Score=56.83 Aligned_cols=113 Identities=14% Similarity=0.230 Sum_probs=66.5
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHhc------CceecCCHHhhcCCCCEEEEeCCC
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKET------GAKFEEDLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~~------g~~~~~~l~ell~~aDvVv~~~p~ 102 (221)
-.||+|||.|.+|..+|..+...|. ++..+|.+....+ ..... .+....+.++ +++||+|+++.-.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~ 81 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA 81 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence 3599999999999999998876664 6999998653221 11111 1222346665 8999999997542
Q ss_pred Ch---hhhh-cc--hH-------HHHhcCCCCCEEEEcCCCCccCHHH--HHHH--HHhCCceEEE
Q 027577 103 TE---KTRG-MF--DK-------DRIAKMKKGVLIVNNARGAIMDTQA--VVDA--CSSGHIAGYS 151 (221)
Q Consensus 103 ~~---~t~~-~i--~~-------~~~~~mk~ga~lIn~srg~~vd~~a--l~~a--l~~g~i~~a~ 151 (221)
.+ .++. ++ +. +.+....+.+++|+++ .++|.-+ +.+. +...++.|.+
T Consensus 82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEecC
Confidence 11 1221 11 11 2233447789999998 4444322 2332 3345555553
No 289
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.31 E-value=0.00075 Score=55.69 Aligned_cols=90 Identities=24% Similarity=0.268 Sum_probs=62.4
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH---HhcCce---ecCCHHhhcCCCCEEEEeCCCChh
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE---KETGAK---FEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~---~~~g~~---~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
.+|.|++|.|||.|.+|..=++.+...|.+|+++.+.. ..+.. ...++. ...+.++ +..+++|+.+++..+
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~- 84 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE- 84 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH-
Confidence 47999999999999999999999999999999999865 33221 111211 1123333 344999999997333
Q ss_pred hhhcchHHHHhcCCCCCEEEEcC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
+++..+...++-.++||+.
T Consensus 85 ----ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 85 ----LNERIAKAARERRILVNVV 103 (210)
T ss_pred ----HHHHHHHHHHHhCCceecc
Confidence 5555555556666777763
No 290
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=97.29 E-value=0.0022 Score=55.84 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=53.0
Q ss_pred CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh--hH----HHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--QL----EKETG--AKFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~----~~~~g--~~~~~~l~ell~~aDvVv~~ 99 (221)
.+.|.+|+++|- +++.++++..+..+|++|.+..|..... +. ++..| +....+++++++++|+|..-
T Consensus 149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 224 (304)
T PRK00779 149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD 224 (304)
T ss_pred CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 488999999996 8899999999999999999998754222 22 23345 44567999999999999875
No 291
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=97.29 E-value=0.0074 Score=51.80 Aligned_cols=168 Identities=13% Similarity=0.082 Sum_probs=103.1
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccC----CC-------eEEEEcCCCC----Ch-------hHHHhcCceecCCHHh
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKM----DP-------QLEKETGAKFEEDLDT 88 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~----G~-------~V~~~d~~~~----~~-------~~~~~~g~~~~~~l~e 88 (221)
+..|...||.|+|.|.-|..+|+.+... |. +++.+|+... .. ..++...-....+|.|
T Consensus 20 g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e 99 (279)
T cd05312 20 GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLE 99 (279)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHH
Confidence 4568899999999999999999998766 77 6888887631 11 1111111012358999
Q ss_pred hcC--CCCEEEEeCCCChhhhhcchHHHHhcCC---CCCEEEEcCCCCccCHHHHHHHHH--hCC-ceEEEeeCCCCCCC
Q 027577 89 MLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS--SGH-IAGYSGDVWNPQPA 160 (221)
Q Consensus 89 ll~--~aDvVv~~~p~~~~t~~~i~~~~~~~mk---~ga~lIn~srg~~vd~~al~~al~--~g~-i~~a~lDV~~~ep~ 160 (221)
+++ ++|+++=+.. ..++|.++.++.|. +..+|.=.|.-....|..=.++.+ +|+ |.+.+.-.-..+..
T Consensus 100 ~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~ 175 (279)
T cd05312 100 VVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYN 175 (279)
T ss_pred HHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeC
Confidence 999 8898876542 23789999999998 889999999876643433333333 455 43222211011110
Q ss_pred CCCCCCCCCCCeEECCCCCcCCHH-------HHHHHHHHHHHHHHHcCC
Q 027577 161 PKDHPWRYMPNQAMTPHVSGTTID-------LRYAAGVKDMLDRYFKGE 202 (221)
Q Consensus 161 ~~~~~l~~~~n~~~tPH~a~~t~~-------~~~~~~~~~~~~~~~~g~ 202 (221)
.....--+..|+++-|=++-.... ..|.....+.|..+..-+
T Consensus 176 Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~ 224 (279)
T cd05312 176 GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDE 224 (279)
T ss_pred CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCcc
Confidence 011112355789999988643332 444445556666665443
No 292
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.28 E-value=0.00077 Score=63.30 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=61.1
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHHh----hcCCCCEEEEeCCCChhhhh
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e----ll~~aDvVv~~~p~~~~t~~ 108 (221)
.++-|+|+|++|+.+++.|+..|.++++.|.+++..+.+++.|...+ .+.+- -++++|.++++++.+.++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 46789999999999999999999999999987765566666665422 22221 24689999999987666554
Q ss_pred cchHHHHhcCCCCCEEEE
Q 027577 109 MFDKDRIAKMKKGVLIVN 126 (221)
Q Consensus 109 ~i~~~~~~~mk~ga~lIn 126 (221)
++.. ...+.+...+|-
T Consensus 498 iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558)
T ss_pred HHHH--HHHHCCCCeEEE
Confidence 4432 223345555554
No 293
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.28 E-value=0.0011 Score=57.88 Aligned_cols=95 Identities=8% Similarity=-0.012 Sum_probs=69.6
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCCh-------hH-----------HHhc-------------CceecCC--HHhhcCCC
Q 027577 47 IGKLLLQRLKPFNCNLLYHDRVKMDP-------QL-----------EKET-------------GAKFEED--LDTMLPKC 93 (221)
Q Consensus 47 iG~~iA~~l~~~G~~V~~~d~~~~~~-------~~-----------~~~~-------------g~~~~~~--l~ell~~a 93 (221)
||..+|..+...|++|.+||+++... +. ..+. .+....+ +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 68899999999999999999987321 00 0011 1222322 56788999
Q ss_pred CEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (221)
Q Consensus 94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~ 143 (221)
|+|+-++|.+.+.+..+-.+..+.++++++|.+ .-+.+....|.+.++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaS--ntS~~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAS--TTSTFLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEE--ccccCCHHHHHhhcC
Confidence 999999999888888887778888999999954 444566777777764
No 294
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.28 E-value=0.00082 Score=58.54 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=46.4
Q ss_pred CEEEEEccCHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHhc-Cce--------ecCCHHhhcCCCCEEEEeCCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET-GAK--------FEEDLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~~-g~~--------~~~~l~ell~~aDvVv~~~p~ 102 (221)
++|+|||.|.+|..+|..|...| .+|.++|++....+ .+.++ ... ...+. +.+++||+|+++.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence 47999999999999999998888 57999998753322 11111 111 11344 558999999999884
No 295
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.28 E-value=0.002 Score=58.87 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=80.0
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh----hHHHhcCceec--CCHHhhcCCCCEEEEeCCCChhhh
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP----QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~----~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~~~t~ 107 (221)
+.+|+|.|+|+|.-|.++++.|.+.|++|+++|.++... ......++... ....+...++|+|+..-. -+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG-i~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG-IPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCC-CCCCC
Confidence 459999999999999999999999999999999765441 11112343322 112256788999988632 12111
Q ss_pred h-----------cc-hHHHHhcC--CCCCEEEEcCCCCccCHHHHHHHHHh--------CCceEEEeeCCCCCC
Q 027577 108 G-----------MF-DKDRIAKM--KKGVLIVNNARGAIMDTQAVVDACSS--------GHIAGYSGDVWNPQP 159 (221)
Q Consensus 108 ~-----------~i-~~~~~~~m--k~ga~lIn~srg~~vd~~al~~al~~--------g~i~~a~lDV~~~ep 159 (221)
. ++ +-+++-.. +.-.+-|.-+.|+.-.+.-+...|++ |.|...++|+.++++
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~ 157 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE 157 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence 1 12 22233332 22244455667887777667766665 777888889887743
No 296
>PLN02342 ornithine carbamoyltransferase
Probab=97.26 E-value=0.0027 Score=56.24 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=52.3
Q ss_pred CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh--hH---HHhcC---ceecCCHHhhcCCCCEEEEeC
Q 027577 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--QL---EKETG---AKFEEDLDTMLPKCDIVVVNT 100 (221)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~---~~~~g---~~~~~~l~ell~~aDvVv~~~ 100 (221)
.+.|+||++||- .++.++++..+..+|++|.+..|..... +. ++..| +....+++++++++|+|....
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~ 267 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDV 267 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECC
Confidence 488999999995 5799999999999999999998754221 11 22223 455689999999999998763
No 297
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=97.25 E-value=0.0022 Score=55.81 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=52.1
Q ss_pred CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh-h-H-------HHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-Q-L-------EKETG--AKFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~-~-------~~~~g--~~~~~~l~ell~~aDvVv~~ 99 (221)
.+.|.||+++|- +++.++++..+..+|++|.+..|..... + . +...| +....++++.++++|+|..-
T Consensus 145 ~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 223 (304)
T TIGR00658 145 KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTD 223 (304)
T ss_pred CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 488999999995 7899999999999999999998754221 1 1 12334 34567999999999999874
No 298
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.0015 Score=56.44 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=52.5
Q ss_pred CCCCCEEEEEc---cCHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577 33 DLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETG--AKFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 33 ~l~g~~vgIIG---~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g--~~~~~~l~ell~~aDvVv~~ 99 (221)
.+.|++|+|+| +|+..++.++.|+.+|.+|.++.|..... +.....| +...+..++.++++||+.+.
T Consensus 155 ~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l 231 (316)
T COG0540 155 RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML 231 (316)
T ss_pred CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence 48999999999 99999999999999999999999865333 3333333 23355666699999999664
No 299
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.24 E-value=0.0011 Score=62.80 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=65.3
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHHhh----cCCCCEEEEeCCCChhhh
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~el----l~~aDvVv~~~p~~~~t~ 107 (221)
..+|.|+|+|++|+.+++.|...|.++++.|.++...+.+++.|...+ ++.+-+ +++||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 457999999999999999999999999999987766666666665421 222211 568999999999665554
Q ss_pred hcchHHHHhcCCCCCEEEEcCC
Q 027577 108 GMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~sr 129 (221)
.+. ...+.+.|...+|--+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 433 23444566766665544
No 300
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.24 E-value=0.00086 Score=60.18 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=60.6
Q ss_pred CCCCEEEEEcc-CHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHh-c------CceecCCHHh-hcCCCCEEEEeCCCC
Q 027577 34 LEGKTVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKE-T------GAKFEEDLDT-MLPKCDIVVVNTPLT 103 (221)
Q Consensus 34 l~g~~vgIIG~-G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~-~------g~~~~~~l~e-ll~~aDvVv~~~p~~ 103 (221)
-..++|+|+|. |.+|+.+.+.|... +++|..+.+.....+.... . ....+.+++. .++++|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 45669999995 99999999999877 6787777653221111111 0 0111122222 258899999999932
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcCCCCccCHH
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQ 136 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~ 136 (221)
...+....|+.|+.+|+.|..--.+.+
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~ 142 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDI 142 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCc
Confidence 333344445678999999865544444
No 301
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=97.24 E-value=0.0011 Score=56.53 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=59.5
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceecCCH---Hh----hc--CCCCEEEEeCCCC
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDL---DT----ML--PKCDIVVVNTPLT 103 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l---~e----ll--~~aDvVv~~~p~~ 103 (221)
..|++|.|+|.|.+|...++.++.+|.+ |++.++++.+.+.++++|+..+-+. .+ +. ...|+++-++...
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 3689999999999999999999999997 8888876655666677776432111 11 11 2367777665421
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
. .-...+..++++..++.++
T Consensus 199 ~-----~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 199 A-----AVRACLESLDVGGTAVLAG 218 (280)
T ss_pred H-----HHHHHHHHhcCCCEEEEec
Confidence 1 1123456667777777664
No 302
>PRK04148 hypothetical protein; Provisional
Probab=97.24 E-value=0.00071 Score=51.81 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=53.1
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-----cCCHHhhcCCCCEEEEeCCC
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-----EEDLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-----~~~l~ell~~aDvVv~~~p~ 102 (221)
.+++++.+||+| -|..+|..|+..|++|++.|.++...+.++..++.. ++.--++.+.+|+|...-|.
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence 356899999999 899999999999999999999876666565555432 22334677889999888873
No 303
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.22 E-value=0.0017 Score=56.65 Aligned_cols=141 Identities=12% Similarity=0.113 Sum_probs=83.3
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee------------cCCHHhhcCCCCEEEEeCCCCh
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF------------EEDLDTMLPKCDIVVVNTPLTE 104 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~------------~~~l~ell~~aDvVv~~~p~~~ 104 (221)
+||.|+|.|.||.-++..|...|..|.++.|.+. .+..++.|... .....+.+..+|+|++++.. -
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-Y 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-c
Confidence 5899999999999999999999977888887553 34444444321 11223556689999999873 2
Q ss_pred hhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCC-CCCCCCCeEECCCCCcCC
Q 027577 105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH-PWRYMPNQAMTPHVSGTT 182 (221)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~-~l~~~~n~~~tPH~a~~t 182 (221)
++...+ +.....+++.+.|+-.-- ++=.++.+.+.....++- .++..+...-..+.+ .......+.+.+..++.+
T Consensus 79 q~~~al-~~l~~~~~~~t~vl~lqN-G~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 79 QLEEAL-PSLAPLLGPNTVVLFLQN-GLGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cHHHHH-HHhhhcCCCCcEEEEEeC-CCcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 333333 445566777877775533 344455566666555444 233332221111111 112234566777666554
No 304
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=97.21 E-value=0.012 Score=49.85 Aligned_cols=166 Identities=13% Similarity=0.053 Sum_probs=100.7
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCC-----------eEEEEcCCCC----C--h-hHHHh---c--CceecCCHH
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-----------NLLYHDRVKM----D--P-QLEKE---T--GAKFEEDLD 87 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-----------~V~~~d~~~~----~--~-~~~~~---~--g~~~~~~l~ 87 (221)
+..|...||.|+|.|..|-.+|+.+...+. +++.+|+... . . ...+. + .-....+|.
T Consensus 20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ 99 (254)
T cd00762 20 KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLE 99 (254)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHH
Confidence 456889999999999999999999877654 5888887631 1 0 10011 0 111235899
Q ss_pred hhcC--CCCEEEEeCCCChhhhhcchHHHHhcCC---CCCEEEEcCCCCccCHHHHHHHHHh--CC-ceEEEeeCCCCCC
Q 027577 88 TMLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACSS--GH-IAGYSGDVWNPQP 159 (221)
Q Consensus 88 ell~--~aDvVv~~~p~~~~t~~~i~~~~~~~mk---~ga~lIn~srg~~vd~~al~~al~~--g~-i~~a~lDV~~~ep 159 (221)
|+++ +.|+++=... ..++|.++.++.|. +..+|.=.|.-..-.|..=.++.+- |+ |.+.+.-.+.++-
T Consensus 100 eav~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~ 175 (254)
T cd00762 100 DAVEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL 175 (254)
T ss_pred HHHHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc
Confidence 9999 8998875432 24789999999998 8899999988766333333333333 43 3322222111111
Q ss_pred CCCCCCCCCCCCeEECCCCCcCCHH-------HHHHHHHHHHHHHHHc
Q 027577 160 APKDHPWRYMPNQAMTPHVSGTTID-------LRYAAGVKDMLDRYFK 200 (221)
Q Consensus 160 ~~~~~~l~~~~n~~~tPH~a~~t~~-------~~~~~~~~~~~~~~~~ 200 (221)
.......-+..|+++-|=++-.... ..|.....+.|..+..
T Consensus 176 ~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~ 223 (254)
T cd00762 176 NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVT 223 (254)
T ss_pred CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCC
Confidence 1111122356799999988643332 3444445555655554
No 305
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.21 E-value=0.0039 Score=56.74 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=70.0
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC-h----hHHHhcCcee--cCCHHhhcCCCCEEEEeCCCChh
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-P----QLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~----~~~~~~g~~~--~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
++.+|++.|+|.|.+|.++|+.|...|++|.++|+.... . +.....++.. ....++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 467999999999999999999999999999999986421 1 1122334432 12334556789999987643332
Q ss_pred hhhcc-----------hHHHHhc-CCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 106 TRGMF-----------DKDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 106 t~~~i-----------~~~~~~~-mk~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
...+. ..+.+.. .+...+-|.-+.|+--..+-|...|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 22111 0111222 232234455567887777777777765
No 306
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=97.21 E-value=0.0032 Score=55.66 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=51.9
Q ss_pred CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCC-C-hhHH-------HhcC--ceecCCHHhhcCCCCEEEEe
Q 027577 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQLE-------KETG--AKFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~~~-------~~~g--~~~~~~l~ell~~aDvVv~~ 99 (221)
.+.|.+|++||- .++.++++..+..+|++|.++.|... . .+.. +..| +....+++++++++|+|..-
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~ 229 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTD 229 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 588999999995 78999999999999999999987532 1 1211 1224 45568999999999999883
No 307
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.20 E-value=0.0041 Score=56.53 Aligned_cols=112 Identities=16% Similarity=0.203 Sum_probs=70.3
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh----hHHHhcCceec--CCHHhhcCC-CCEEEEeC--C-C
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP----QLEKETGAKFE--EDLDTMLPK-CDIVVVNT--P-L 102 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~----~~~~~~g~~~~--~~l~ell~~-aDvVv~~~--p-~ 102 (221)
++.|+++.|+|.|.+|.++|+.|.+.|++|.++|+..... +.....|+... ....+++.. +|+|+... | .
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 4679999999999999999999999999999999754221 22334465432 233444554 89888765 2 1
Q ss_pred Chhh-------hhcchH-HHHhcC-CCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 103 TEKT-------RGMFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 103 ~~~t-------~~~i~~-~~~~~m-k~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
.+.. ..++.+ +.+..+ +...+-|--+.|+--...-+...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 2211 112222 222233 33345566667887777777777765
No 308
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.19 E-value=0.001 Score=61.28 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=71.1
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhcCceecC--CHHhhcCCCCEEEEeC--C-CChhh
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEE--DLDTMLPKCDIVVVNT--P-LTEKT 106 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~--~l~ell~~aDvVv~~~--p-~~~~t 106 (221)
.+.+++|.|+|+|..|+++|+.|...|++|.++|+...... .....|+.... ...+.+.++|+||..- | ..|..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 57899999999999999999999999999999997543222 23445765432 2234567899888763 2 22221
Q ss_pred h-------hcchHHHHh-c------C-CC-CCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577 107 R-------GMFDKDRIA-K------M-KK-GVLIVNNARGAIMDTQAVVDACSSGH 146 (221)
Q Consensus 107 ~-------~~i~~~~~~-~------m-k~-ga~lIn~srg~~vd~~al~~al~~g~ 146 (221)
. .++.+-.+. . + .+ ..+-|--+.|+--...-|.+.|+...
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 1 112221221 1 1 12 23445556787777777777777533
No 309
>PLN02527 aspartate carbamoyltransferase
Probab=97.19 E-value=0.0049 Score=53.72 Aligned_cols=68 Identities=22% Similarity=0.340 Sum_probs=51.2
Q ss_pred CCCCCEEEEEccC---HHHHHHHHHHccC-CCeEEEEcCCCC--ChhH---HHhcCc--eecCCHHhhcCCCCEEEEeC
Q 027577 33 DLEGKTVGTVGCG---RIGKLLLQRLKPF-NCNLLYHDRVKM--DPQL---EKETGA--KFEEDLDTMLPKCDIVVVNT 100 (221)
Q Consensus 33 ~l~g~~vgIIG~G---~iG~~iA~~l~~~-G~~V~~~d~~~~--~~~~---~~~~g~--~~~~~l~ell~~aDvVv~~~ 100 (221)
++.|.||++||-+ ++.++++..+..+ |++|.+..|... +.+. +++.|. ...+++++.++++|+|....
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 226 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR 226 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC
Confidence 4889999999965 6899999998887 999998887542 1122 222343 44679999999999998843
No 310
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.18 E-value=0.0016 Score=59.30 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=65.9
Q ss_pred CEEEEEccCHHHHHHHHHHccC----------CCeE-EEEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPF----------NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLT 103 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~----------G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~ 103 (221)
.+|||+|+|.||+.+++.+... +.+| .+++++..........+.....++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4799999999999998887432 3454 35576543222111112334578999985 579999998743
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcCCCCccC-HHHHHHHHHhCCce
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMD-TQAVVDACSSGHIA 148 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd-~~al~~al~~g~i~ 148 (221)
.... .-....|+.|..+|....+.... -+.|.++.++.+..
T Consensus 84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 2111 12335567888888654432222 35677777776654
No 311
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=97.17 E-value=0.0023 Score=55.84 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=51.7
Q ss_pred CCCCCEEEEEcc---CHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEE
Q 027577 33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 98 (221)
Q Consensus 33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~ 98 (221)
.+.|.+|++||= +++.++++..+..+|+ ++.+..|....++......+...++++++++.+|+|..
T Consensus 154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 478999999996 6999999999999999 89998875432221111235566899999999999987
No 312
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=97.16 E-value=0.0024 Score=56.18 Aligned_cols=68 Identities=21% Similarity=0.343 Sum_probs=52.5
Q ss_pred CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCCCh-h--------HHHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP-Q--------LEKETG--AKFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~~~-~--------~~~~~g--~~~~~~l~ell~~aDvVv~~ 99 (221)
.+.|+||++||-+ ++.++++..+..+|++|.+..|..... + .++..| +...++++++++++|+|..-
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4889999999986 799999999999999999988754221 1 122234 34567999999999999885
Q ss_pred C
Q 027577 100 T 100 (221)
Q Consensus 100 ~ 100 (221)
+
T Consensus 232 ~ 232 (331)
T PRK02102 232 V 232 (331)
T ss_pred C
Confidence 3
No 313
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.15 E-value=0.0016 Score=58.17 Aligned_cols=89 Identities=24% Similarity=0.415 Sum_probs=62.1
Q ss_pred CCCCEEEEEccC----------HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCC
Q 027577 34 LEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT 103 (221)
Q Consensus 34 l~g~~vgIIG~G----------~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~ 103 (221)
|.||||||.|+- .-...+++.|+..|.+|.+|||...........++...++++++++.||++++++. .
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence 899999999964 35677899999999999999985422211111136778999999999999999986 2
Q ss_pred hhhhhcchHHHHhcCCCCCEEEE
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVN 126 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn 126 (221)
++.+.+ +-+.+ .|| +..+++
T Consensus 387 ~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 387 DEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHHhcc-Chhhh-hcc-CCEEEe
Confidence 333332 32333 455 456665
No 314
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=97.15 E-value=0.0024 Score=56.30 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=52.0
Q ss_pred CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH-------HHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL-------EKETG--AKFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~-------~~~~g--~~~~~~l~ell~~aDvVv~~ 99 (221)
.+.|+||++||-+ ++.++++..+..+|++|.+..|... .. +. ++..| +....+++++++++|+|..-
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 4889999999964 8999999999999999999887532 11 11 12334 45568999999999999885
No 315
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=97.15 E-value=0.0035 Score=52.96 Aligned_cols=89 Identities=18% Similarity=0.340 Sum_probs=57.9
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~ 115 (221)
--++-|+|.|.+++++++.++..|++|.++|.++. .+. +..+..++.+....| .+.+
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~---~~~----------~~~~~~~~~~~~~~~----------~~~~ 156 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA---EFP----------EDLPDGVATLVTDEP----------EAEV 156 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc---ccc----------ccCCCCceEEecCCH----------HHHH
Confidence 35899999999999999999999999999997542 110 011123333322222 1122
Q ss_pred hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCc
Q 027577 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147 (221)
Q Consensus 116 ~~mk~ga~lIn~srg~~vd~~al~~al~~g~i 147 (221)
..+.+++.+|-++++.-.|.+.|..+|.+...
T Consensus 157 ~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~ 188 (246)
T TIGR02964 157 AEAPPGSYFLVLTHDHALDLELCHAALRRGDF 188 (246)
T ss_pred hcCCCCcEEEEEeCChHHHHHHHHHHHhCCCC
Confidence 23456777777778888888888888844333
No 316
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=97.13 E-value=0.0022 Score=55.98 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=66.5
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHh-hcCCCCEEEEeCCCChhhhhcchHH
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-MLPKCDIVVVNTPLTEKTRGMFDKD 113 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e-ll~~aDvVv~~~p~~~~t~~~i~~~ 113 (221)
.|.+|.|.|.|.+|...++.++.+|.+|++.++++.+.+.++++|+..+-+..+ .-+..|+++.+... .. .-..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~-~~----~~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPA-GG----LVPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCc-HH----HHHH
Confidence 488999999999999999999999999999988776777888888764322211 12346877776652 11 2345
Q ss_pred HHhcCCCCCEEEEcCC
Q 027577 114 RIAKMKKGVLIVNNAR 129 (221)
Q Consensus 114 ~~~~mk~ga~lIn~sr 129 (221)
.++.++++..++.++-
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 6788999999988764
No 317
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.13 E-value=0.00052 Score=50.94 Aligned_cols=100 Identities=23% Similarity=0.361 Sum_probs=59.9
Q ss_pred ccCHHHHHHHHHHccC----CCeEE-EEcCC--CCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcchHH
Q 027577 43 GCGRIGKLLLQRLKPF----NCNLL-YHDRV--KMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDKD 113 (221)
Q Consensus 43 G~G~iG~~iA~~l~~~----G~~V~-~~d~~--~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i~~~ 113 (221)
|+|.||+.+++.+... +++|. +++++ ..........+.....++++++. ..|+|+=|++. +.. .+-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~----~~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAV----AEY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHH----HHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHH----HHH
Confidence 8999999999999765 56754 55665 11111111223345678999998 89999999663 222 223
Q ss_pred HHhcCCCCCEEEEcCCCCccC---HHHHHHHHHhCCc
Q 027577 114 RIAKMKKGVLIVNNARGAIMD---TQAVVDACSSGHI 147 (221)
Q Consensus 114 ~~~~mk~ga~lIn~srg~~vd---~~al~~al~~g~i 147 (221)
....|+.|.-+|..+.+.+.| -+.|.++.++++.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~ 112 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV 112 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence 445577899999999888872 3345455554443
No 318
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=97.12 E-value=0.0036 Score=55.21 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=66.0
Q ss_pred CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCC-Chh--------HHHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DPQ--------LEKETG--AKFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~~--------~~~~~g--~~~~~~l~ell~~aDvVv~~ 99 (221)
.+.|+||++||-+ ++.++++..+..+|++|.+..|... ..+ .++..| +...+++++.++++|+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4889999999975 6899999999999999999987532 111 122234 44568999999999999874
Q ss_pred C----CCC-h---h-----hhhcchHHHHhcC-CCCCEEEEcC
Q 027577 100 T----PLT-E---K-----TRGMFDKDRIAKM-KKGVLIVNNA 128 (221)
Q Consensus 100 ~----p~~-~---~-----t~~~i~~~~~~~m-k~ga~lIn~s 128 (221)
. ... + + ....++.+.++.. |++++|+.+.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 2 100 0 0 0122566667765 6777777664
No 319
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=97.12 E-value=0.0017 Score=60.70 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=47.1
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhcCce--ecCCHHhhc-CCCCEEEEeCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAK--FEEDLDTML-PKCDIVVVNTP 101 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~--~~~~l~ell-~~aDvVv~~~p 101 (221)
..+.++++.|+|.|.+|++++..|...|++|++++|+....+. +...+.. ...++.+.. ..+|+|+.++|
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~ 448 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTS 448 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEeccc
Confidence 3578999999999999999999999999999999986432222 2222211 112222222 34677777776
No 320
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.10 E-value=0.0007 Score=60.51 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=51.6
Q ss_pred EEEEccCHHHHHHHHHHccCC-C-eEEEEcCCCCChhHHHh----cCcee-------cCCHHhhcCCCCEEEEeCCCChh
Q 027577 39 VGTVGCGRIGKLLLQRLKPFN-C-NLLYHDRVKMDPQLEKE----TGAKF-------EEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 39 vgIIG~G~iG~~iA~~l~~~G-~-~V~~~d~~~~~~~~~~~----~g~~~-------~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
|+|+|.|.+|+.+++.|...+ . +|++.||+....+...+ ..+.. ..+++++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence 789999999999999998765 4 89999997644332221 12211 123678899999999999832
Q ss_pred hhhcchHHHHhcCCCCCEEEEc
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNN 127 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~ 127 (221)
...-+ .-..++.|...||+
T Consensus 79 ~~~~v---~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 79 FGEPV---ARACIEAGVHYVDT 97 (386)
T ss_dssp GHHHH---HHHHHHHT-EEEES
T ss_pred hhHHH---HHHHHHhCCCeecc
Confidence 11111 22234557777774
No 321
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.07 E-value=0.00066 Score=52.42 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=45.1
Q ss_pred CEEEEEcc-CHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHh-------c--CceecCCHHhhcCCCCEEEEeCC
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKE-------T--GAKFEEDLDTMLPKCDIVVVNTP 101 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~-------~--g~~~~~~l~ell~~aDvVv~~~p 101 (221)
+||+|||. |.+|..+|..|...+ -++..+|+.....+ .+.+ . .........+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 58999999 999999999986555 47999998642111 1111 1 11222355677899999999874
No 322
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.07 E-value=0.0026 Score=54.57 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=45.5
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHH-HhcCceecCCHHhh-cCCCCEEEEeCCC
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLE-KETGAKFEEDLDTM-LPKCDIVVVNTPL 102 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~-~~~g~~~~~~l~el-l~~aDvVv~~~p~ 102 (221)
++++.|+|.|..+++++..|...|+. |.+++|+..+.+.. +..+.... +++ ...+|+||.|+|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~---~~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR---PDLGGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch---hhcccccCCEEEECCcc
Confidence 57899999999999999999999984 99999976433322 22332211 111 2458999999983
No 323
>PRK05086 malate dehydrogenase; Provisional
Probab=97.07 E-value=0.0049 Score=53.87 Aligned_cols=66 Identities=27% Similarity=0.349 Sum_probs=44.8
Q ss_pred CEEEEEcc-CHHHHHHHHHHc---cCCCeEEEEcCCCCC----hhHHH-h--cCcee--cCCHHhhcCCCCEEEEeCCC
Q 027577 37 KTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMD----PQLEK-E--TGAKF--EEDLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~---~~G~~V~~~d~~~~~----~~~~~-~--~g~~~--~~~l~ell~~aDvVv~~~p~ 102 (221)
++|+|||. |.+|..++..+. ..+.++..+|+++.. .+... . ..+.. .+++.+.++++|+|++|.-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 68999999 999999998773 345678999976432 12111 1 11111 24656788999999998753
No 324
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=97.06 E-value=0.00069 Score=57.16 Aligned_cols=93 Identities=20% Similarity=0.176 Sum_probs=60.0
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhc--Cc--ee-
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKET--GA--KF- 82 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~--g~--~~- 82 (221)
..|..++|+|||+|.+|..+++.|...|. ++.++|...... + ...+. .+ ..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 46999999999999999999999999997 577777542110 0 00111 11 11
Q ss_pred ---c--CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 83 ---~--~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
. .+.+++++++|+|+.|+ .+.+++..+++...+. +..+|..+
T Consensus 108 ~~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~---~ip~v~~~ 154 (245)
T PRK05690 108 NARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAA---KKPLVSGA 154 (245)
T ss_pred eccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHh---CCEEEEee
Confidence 1 12356778899888887 4666666666554443 44566643
No 325
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.04 E-value=0.0046 Score=55.90 Aligned_cols=90 Identities=22% Similarity=0.229 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcc----------CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCC
Q 027577 33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 33 ~l~g~~vgIIG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~ 102 (221)
.+.|++|+|+|+ .+-+..+++.|...|.+|.+||+...... ... .....++++.++.+|+|+++++.
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-~~~--~~~~~~~~~~~~~ad~~v~~t~~ 386 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-VKG--LPLIDDLEEALKGADALVILTDH 386 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-hhh--cccCCCHHHHHhCCCEEEEecCC
Confidence 588999999996 34678899999999999999998643222 222 22246888999999999999973
Q ss_pred ChhhhhcchHHHHhcCCCCCEEEEc
Q 027577 103 TEKTRGMFDKDRIAKMKKGVLIVNN 127 (221)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~lIn~ 127 (221)
. +.+.+-.+.....|+ ..+++|.
T Consensus 387 ~-~~~~~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 387 D-EFKDLDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred H-HHhccCHHHHHHhcC-CCEEEeC
Confidence 3 333322233333454 4578874
No 326
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.03 E-value=0.00097 Score=56.10 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=70.8
Q ss_pred CEEEEEccCHHHHHHHHHHccCCC----eEEEEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
+++|+||.|+|..++++.+.+.|. +++.+-++...... ++..|+..+.+-.+.++.+|++++++. |.....+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK--p~~i~~vl 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK--PQVIESVL 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec--chhHHHHh
Confidence 479999999999999999988875 47777664434444 667788766555888899999999986 33332232
Q ss_pred HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~ 143 (221)
.+.-.....+.+++.+.-|..++ .|...|.
T Consensus 79 s~~~~~~~~~~iivS~aaG~tl~--~l~~~l~ 108 (267)
T KOG3124|consen 79 SEIKPKVSKGKIIVSVAAGKTLS--SLESKLS 108 (267)
T ss_pred hcCccccccceEEEEEeecccHH--HHHHhcC
Confidence 22222245678999998886543 3444443
No 327
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.03 E-value=0.0015 Score=54.39 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=61.3
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhc----Cceec
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKET----GAKFE 83 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~----g~~~~ 83 (221)
..|.+++|.|+|+|.+|..+|+.|...|. ++.++|...... + ...+. .+...
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999998 577777542110 0 00011 11111
Q ss_pred ------CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 84 ------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 84 ------~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
.+++++++++|+|+.|+. +..++..+++...+ .+..+|+++
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 234567888999988875 66677666655443 345666664
No 328
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=97.03 E-value=0.006 Score=50.50 Aligned_cols=93 Identities=26% Similarity=0.253 Sum_probs=62.2
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhh-----cCCCCEEEEeCCCC
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM-----LPKCDIVVVNTPLT 103 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~el-----l~~aDvVv~~~p~~ 103 (221)
..|.+|.|.|.|.+|+.+++.++..|.+|++.++++...+.++..+.... .+..+. -...|+++.+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 45889999999999999999999999999999886544444444443211 111111 24578888777621
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
......+..|+++..+++.+...
T Consensus 213 -----~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 213 -----ETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred -----HHHHHHHHhcccCCEEEEEccCC
Confidence 12344566778888888876543
No 329
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=97.02 E-value=0.0031 Score=55.63 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=52.1
Q ss_pred CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCC-Chh--------HHHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DPQ--------LEKETG--AKFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~~--------~~~~~g--~~~~~~l~ell~~aDvVv~~ 99 (221)
.+.|.+|++||-+ ++.++++..+..+|+++.+..|... ..+ .++..| +...++++++++++|+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4889999999975 6899999999999999999887542 111 122234 45568999999999999875
No 330
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=97.00 E-value=0.0023 Score=54.45 Aligned_cols=101 Identities=28% Similarity=0.236 Sum_probs=66.1
Q ss_pred cccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHH-HhcCceecCCHHhhcCCCCEEEEeCCC
Q 027577 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLE-KETGAKFEEDLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 30 ~~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~-~~~g~~~~~~l~ell~~aDvVv~~~p~ 102 (221)
.|.+|+..+++|+|+ |.||..+|+-|...+......-|..... ... .+.+-....+++..+.+.|+++.....
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~ 240 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM 240 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence 467899999999995 9999999999999888766655432111 111 123333344666666666666554431
Q ss_pred ChhhhhcchHHHHhcCCCCCEEEEcCCCCccCH
Q 027577 103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT 135 (221)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~ 135 (221)
.+-..|+.+. +|||+.++|-++-.=+|+
T Consensus 241 --~~g~~I~pq~---lkpg~~ivD~g~P~dvd~ 268 (351)
T COG5322 241 --PKGVEIFPQH---LKPGCLIVDGGYPKDVDT 268 (351)
T ss_pred --CCCceechhh---ccCCeEEEcCCcCccccc
Confidence 2334566654 689999999888664544
No 331
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.99 E-value=0.0012 Score=52.18 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=47.9
Q ss_pred EEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCCCCh
Q 027577 39 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLTE 104 (221)
Q Consensus 39 vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p~~~ 104 (221)
|.|+|. |.+|+.+++.|...|++|.++.|++.+.+. ..+++. ..++.+.++.+|+|+.+++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 679995 999999999999999999999997644332 233321 1244677889999999987433
No 332
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.99 E-value=0.0029 Score=58.14 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=71.0
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC-----hhHHHhcCceecC-CHHhhcCCCCEEEEeCC---
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-----PQLEKETGAKFEE-DLDTMLPKCDIVVVNTP--- 101 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-----~~~~~~~g~~~~~-~l~ell~~aDvVv~~~p--- 101 (221)
+..+.+++|.|||.|.+|.++|+.|+..|++|.++|..... .+.+++.|+.... +-.+....+|+|+++..
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence 44678999999999999999999999999999999965421 1224455765431 11123456999998763
Q ss_pred CChhh-----hh--cchH-HHH-hcCCC----CCEEEEcCCCCccCHHHHHHHHHh
Q 027577 102 LTEKT-----RG--MFDK-DRI-AKMKK----GVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 102 ~~~~t-----~~--~i~~-~~~-~~mk~----ga~lIn~srg~~vd~~al~~al~~ 144 (221)
.++.. .+ ++.+ +.+ ..+.+ ..+-|--+.|+--...-+...|+.
T Consensus 91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 33321 11 1222 222 23322 235566667877666666677765
No 333
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=96.98 E-value=0.0069 Score=55.06 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=52.0
Q ss_pred CCCCCEEEEEcc---CHHHHHHHHHHccC-CCeEEEEcCCCC-C-hhH---HHhcC--ceecCCHHhhcCCCCEEEEeC
Q 027577 33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKM-D-PQL---EKETG--AKFEEDLDTMLPKCDIVVVNT 100 (221)
Q Consensus 33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~-G~~V~~~d~~~~-~-~~~---~~~~g--~~~~~~l~ell~~aDvVv~~~ 100 (221)
.+.|+||++||- +++.++++..+..+ |++|.+..|... . .+. +++.| +..+++++++++++|+|....
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 388999999997 59999999998876 999999887542 1 221 22224 445689999999999998844
No 334
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.98 E-value=0.011 Score=54.25 Aligned_cols=109 Identities=12% Similarity=0.131 Sum_probs=74.1
Q ss_pred CCCCEEEEEcc----CHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577 34 LEGKTVGTVGC----GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 34 l~g~~vgIIG~----G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~ 107 (221)
++-++|+|||. |++|..+.+.++..|+ +|+.+++... .-.|+..+.+++++-...|++++++| .+.+.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~-----~i~G~~~~~sl~~lp~~~Dlavi~vp-~~~~~ 78 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG-----EILGVKAYPSVLEIPDPVDLAVIVVP-AKYVP 78 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC-----ccCCccccCCHHHCCCCCCEEEEecC-HHHHH
Confidence 56789999998 8899999999999887 6888887542 13467777889998888999999999 22333
Q ss_pred hcchHHHHhcCCCCCE-EEEcCCCCc-----cCHHHHHHHHHhCCceEE
Q 027577 108 GMFDKDRIAKMKKGVL-IVNNARGAI-----MDTQAVVDACSSGHIAGY 150 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~-lIn~srg~~-----vd~~al~~al~~g~i~~a 150 (221)
.++. +..+ .+-..+ ++.-+-++. ..++++.+..+++.+.-.
T Consensus 79 ~~l~-e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 79 QVVE-ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred HHHH-HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 3333 2332 333334 443333332 235678888888777733
No 335
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.97 E-value=0.0024 Score=58.54 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=72.9
Q ss_pred CCCCEEEEEccCHHHHH-HHHHHccCCCeEEEEcCCCCC-hhHHHhcCceec-CCHHhhcCCCCEEEEeCCC---Chhhh
Q 027577 34 LEGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE-EDLDTMLPKCDIVVVNTPL---TEKTR 107 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~-iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~-~~l~ell~~aDvVv~~~p~---~~~t~ 107 (221)
.++++|.|+|+|..|.+ +|+.|+..|++|.++|..... .+.+++.|+... ....+.+..+|+|+..-.- +|...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 56789999999999999 799999999999999975432 122344566543 1223556789988876422 22211
Q ss_pred -------hcchH-HHHhcC-CC-CCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577 108 -------GMFDK-DRIAKM-KK-GVLIVNNARGAIMDTQAVVDACSSGH 146 (221)
Q Consensus 108 -------~~i~~-~~~~~m-k~-ga~lIn~srg~~vd~~al~~al~~g~ 146 (221)
.++.+ +.+..+ ++ ..+-|.-+.|+--...-+.+.|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 22332 333333 32 34556667888877777777787654
No 336
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.97 E-value=0.0026 Score=58.85 Aligned_cols=116 Identities=17% Similarity=0.203 Sum_probs=69.8
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhc--Cceec--CCHHhhcCCCCEEEEe--CCCC-
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKET--GAKFE--EDLDTMLPKCDIVVVN--TPLT- 103 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~--g~~~~--~~l~ell~~aDvVv~~--~p~~- 103 (221)
++.+++|.|+|+|..|.++|+.|+..|++|.++|...... +.+... |+... ....+.+..+|+|+.. +|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~ 83 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLE 83 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcc
Confidence 3568999999999999999999999999999999754221 223333 33321 1234556789999886 3322
Q ss_pred ----hhh-------hhcc-hHHHH-hcC--------CCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 104 ----EKT-------RGMF-DKDRI-AKM--------KKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 104 ----~~t-------~~~i-~~~~~-~~m--------k~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
|.. ..++ ..+.+ ..+ ++..+-|--+.|+--...-|...|++....
T Consensus 84 ~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~ 149 (498)
T PRK02006 84 AALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149 (498)
T ss_pred cccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 211 1122 11221 112 122445555677776666677777654433
No 337
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.96 E-value=0.0031 Score=60.14 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=63.3
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHHh----hcCCCCEEEEeCCCChhhh
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e----ll~~aDvVv~~~p~~~~t~ 107 (221)
..+|-|+|+|++|+.+++.|.+.|.++++.|.++...+.+++.|...+ ++.+- -++++|.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 468999999999999999999999999999987766666666665422 23221 2468999999998655554
Q ss_pred hcchHHHHhcCCCCCEEEEcC
Q 027577 108 GMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~s 128 (221)
.+. ...+.+.|+..++--+
T Consensus 480 ~i~--~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIARA 498 (621)
T ss_pred HHH--HHHHHhCCCCeEEEEE
Confidence 432 2334445665555433
No 338
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.95 E-value=0.0052 Score=55.86 Aligned_cols=91 Identities=18% Similarity=0.117 Sum_probs=58.9
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--Cceec----CCHH----hhcCCCCEEEEeCCCC
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAKFE----EDLD----TMLPKCDIVVVNTPLT 103 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--g~~~~----~~l~----ell~~aDvVv~~~p~~ 103 (221)
+..+++.|+|+|.+|+.+++.|...|.+|+++|.++...+...+. ++..+ .+.+ .-++++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 557899999999999999999999999999999876443333332 33211 1222 2346899999888854
Q ss_pred hhhhhcchHHHHhcCCCCCEEEE
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVN 126 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn 126 (221)
..+ ++.......+.+..+++-
T Consensus 309 ~~n--~~~~~~~~~~~~~~ii~~ 329 (453)
T PRK09496 309 EAN--ILSSLLAKRLGAKKVIAL 329 (453)
T ss_pred HHH--HHHHHHHHHhCCCeEEEE
Confidence 433 222233344444444443
No 339
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.91 E-value=0.012 Score=50.86 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=77.8
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhh--------
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR-------- 107 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~-------- 107 (221)
|++++|||-=.--..+++.|...|++|..+.-...... + .|+......++.++++|+|++-+|.+.+..
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~-~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~ 77 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG-F--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN 77 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc-c--ccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence 68999999999999999999999999888764221111 1 155566666777999999999999655421
Q ss_pred --hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577 108 --GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (221)
Q Consensus 108 --~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~ 156 (221)
-.++++.++.+++++++ -++ ++..++.++.++..+. ..|.++
T Consensus 78 ~~~~l~~~~l~~~~~~~~~-~~G----~~~~~l~~~a~~~gi~--v~~~~~ 121 (287)
T TIGR02853 78 EKVVLTPELLESTKGHCTI-YVG----ISNPYLEQLAADAGVK--LIELFE 121 (287)
T ss_pred CCccccHHHHHhcCCCCEE-EEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence 12467889999976653 333 3455666677777777 554443
No 340
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=96.89 E-value=0.01 Score=51.78 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=44.1
Q ss_pred CEEEEEcc-CHHHHHHHHHHccCCC--eEEEEcCCC--CCh-----hHHH---hcC----ceecCCHHhhcCCCCEEEEe
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVK--MDP-----QLEK---ETG----AKFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~--~~~-----~~~~---~~g----~~~~~~l~ell~~aDvVv~~ 99 (221)
++|+|+|. |.+|..++..+...|. +|.++|+.. ... +..+ ..+ +....+.+ .+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence 58999997 9999999999988776 499999843 111 1111 111 12223544 58999999999
Q ss_pred CC
Q 027577 100 TP 101 (221)
Q Consensus 100 ~p 101 (221)
..
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 85
No 341
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.87 E-value=0.0022 Score=57.18 Aligned_cols=64 Identities=20% Similarity=0.417 Sum_probs=45.1
Q ss_pred CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhcCc-eecC---CHHhhcCCCCEEEEe
Q 027577 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGA-KFEE---DLDTMLPKCDIVVVN 99 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~-~~~~---~l~ell~~aDvVv~~ 99 (221)
.++|||||.|..|+.++..++.+|++|+++|+.+..+... ...-+ ..+. .+.++++.+|+|...
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e 70 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYE 70 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeC
Confidence 3789999999999999999999999999999865433211 11001 0112 355677889988653
No 342
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=96.87 E-value=0.0046 Score=53.80 Aligned_cols=90 Identities=18% Similarity=0.184 Sum_probs=62.4
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-C----CH---HhhcC--CCCEEEEeCCCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E----DL---DTMLP--KCDIVVVNTPLT 103 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-~----~l---~ell~--~aDvVv~~~p~~ 103 (221)
.|.+|.|+|.|.+|...++.++.+|.+ |++.+++....+.++++|+..+ + +. .++.. ..|+|+-++..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~- 241 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGN- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCC-
Confidence 489999999999999999999999999 9998887655566666675321 1 11 12222 47888877652
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
+. .....+..++++..++.++.
T Consensus 242 ~~----~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 242 TA----ARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred HH----HHHHHHHHhhcCCEEEEEcC
Confidence 11 12344667788888887764
No 343
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.85 E-value=0.0031 Score=55.73 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=56.7
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCC---------------------hh----HHHhcC--c--e
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD---------------------PQ----LEKETG--A--K 81 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~---------------------~~----~~~~~g--~--~ 81 (221)
..|..++|.|||+|.+|..+|+.|...|. ++.++|..... .+ ..++.+ + .
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 46899999999999999999999999998 78899875311 00 111111 1 1
Q ss_pred e------cCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHh
Q 027577 82 F------EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116 (221)
Q Consensus 82 ~------~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~ 116 (221)
. ..+..++++++|+|+.|+- +.+++.++++...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~ 139 (339)
T PRK07688 100 AIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK 139 (339)
T ss_pred EEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence 1 1234567888898887764 56666666655443
No 344
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=96.85 E-value=0.019 Score=53.43 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcc---CHHHHHHHHHHccCC-CeEEEEcCCCC--Chh---HHHhcC--ceecCCHHhhcCCCCE
Q 027577 33 DLEGKTVGTVGC---GRIGKLLLQRLKPFN-CNLLYHDRVKM--DPQ---LEKETG--AKFEEDLDTMLPKCDI 95 (221)
Q Consensus 33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~G-~~V~~~d~~~~--~~~---~~~~~g--~~~~~~l~ell~~aDv 95 (221)
.+.|++|++||- +++.++++..+..+| ++|.+..|... +.+ .+++.| +....+++++++++|+
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~ 244 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV 244 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence 588999999996 699999999999998 99998887542 222 222334 4456899999999995
No 345
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.84 E-value=0.014 Score=51.18 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=59.6
Q ss_pred CEEEEEcc-CHHHHHHHHHHccCCC-------eEEEEcCCCCC-------hhHHHhc-----CceecCCHHhhcCCCCEE
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD-------PQLEKET-----GAKFEEDLDTMLPKCDIV 96 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~-------~~~~~~~-----g~~~~~~l~ell~~aDvV 96 (221)
+||+|||. |.+|..+|..+...|. ++..+|..... .+..... .+....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999998876655 79999984321 1111110 122223456788999999
Q ss_pred EEeCCCCh---hhhh-cc--hH-------HHHhcCC-CCCEEEEcCCCCccCHHH
Q 027577 97 VVNTPLTE---KTRG-MF--DK-------DRIAKMK-KGVLIVNNARGAIMDTQA 137 (221)
Q Consensus 97 v~~~p~~~---~t~~-~i--~~-------~~~~~mk-~ga~lIn~srg~~vd~~a 137 (221)
+++.-... .++. ++ +. ..+.... +++++|.++ .++|.-.
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNA 135 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHH
Confidence 99864311 1111 11 11 1222334 588999886 5555444
No 346
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=96.83 E-value=0.011 Score=52.27 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=64.5
Q ss_pred CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCC-C-hhH-------HHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-D-PQL-------EKETG--AKFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~~-------~~~~g--~~~~~~l~ell~~aDvVv~~ 99 (221)
.+.|.+|++||-+ ++.++++..+..+|++|.+..|... . .+. ++..| +...++++++++++|+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999975 7999999999999999999887542 1 111 12234 44568999999999999875
Q ss_pred CC----C-Ch---h-----hhhcchHHHHhcC-CCCCEEEEcC
Q 027577 100 TP----L-TE---K-----TRGMFDKDRIAKM-KKGVLIVNNA 128 (221)
Q Consensus 100 ~p----~-~~---~-----t~~~i~~~~~~~m-k~ga~lIn~s 128 (221)
.= . .+ + ...-++.+.++.. +++++|+.+.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 41 0 00 0 0122455666654 5667666653
No 347
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.82 E-value=0.0032 Score=54.62 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=47.3
Q ss_pred CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCC
Q 027577 37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP 101 (221)
Q Consensus 37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p 101 (221)
|+|.|.| .|.+|+.+++.|...|++|.+.+|+..........+++. ..++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 599999999999999999999998653322222234332 1345677899999987654
No 348
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.78 E-value=0.0043 Score=52.21 Aligned_cols=84 Identities=23% Similarity=0.204 Sum_probs=56.1
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhcC----cee-
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKETG----AKF- 82 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~g----~~~- 82 (221)
..|.+++|.|+|+|.+|..+|+.|...|. ++.++|...... + ...+.+ +..
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 36899999999999999999999999997 477777643211 0 001111 111
Q ss_pred ---c--CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHh
Q 027577 83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116 (221)
Q Consensus 83 ---~--~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~ 116 (221)
. .+.+++++++|+|+.|+ .+.+++..+++...+
T Consensus 100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~ 137 (240)
T TIGR02355 100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFA 137 (240)
T ss_pred eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHH
Confidence 1 23456788899888777 466777777665544
No 349
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.76 E-value=0.0056 Score=53.74 Aligned_cols=69 Identities=25% Similarity=0.236 Sum_probs=46.5
Q ss_pred CCCCCEEEEEcc-CHHHHHHHHHHccCC--CeEEEEcCCCCCh---hHHH---hcCceecCC---HHhhcCCCCEEEEeC
Q 027577 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDP---QLEK---ETGAKFEED---LDTMLPKCDIVVVNT 100 (221)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G--~~V~~~d~~~~~~---~~~~---~~g~~~~~~---l~ell~~aDvVv~~~ 100 (221)
-++.+||+|||. |++|..+|..+...+ .++..+|...... +... ...+....+ ..+.++.||+|+++.
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 466779999999 999999999998444 5799999832221 1111 111222222 257899999999886
Q ss_pred C
Q 027577 101 P 101 (221)
Q Consensus 101 p 101 (221)
-
T Consensus 85 G 85 (321)
T PTZ00325 85 G 85 (321)
T ss_pred C
Confidence 5
No 350
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=96.76 E-value=0.013 Score=51.22 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=52.8
Q ss_pred CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChh-------HHHhcC-ceecCCHHhhcCCCCEEEEeC
Q 027577 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-------LEKETG-AKFEEDLDTMLPKCDIVVVNT 100 (221)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-------~~~~~g-~~~~~~l~ell~~aDvVv~~~ 100 (221)
.+.|+||++||- +++.++++..+..+|++|.+..|.....+ .++..| +....+++++++.+|+|..-+
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 488999999996 79999999999999999999988542211 112223 455679999999999998843
No 351
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.76 E-value=0.0055 Score=54.26 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=50.7
Q ss_pred CCCEEEEEc-cCHHHHHHHHHHccCCC---eEEEEc--CCCCChhHHHhcCceec-CCHHhhcCCCCEEEEeCCCChhhh
Q 027577 35 EGKTVGTVG-CGRIGKLLLQRLKPFNC---NLLYHD--RVKMDPQLEKETGAKFE-EDLDTMLPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~---~V~~~d--~~~~~~~~~~~~g~~~~-~~l~ell~~aDvVv~~~p~~~~t~ 107 (221)
...+|+|+| .|.+|+.+.+.|...++ ++.++. ++............... .+. +.++++|+|++++|.. ...
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~-~~~~~~D~vf~a~p~~-~s~ 83 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTE-DSFDGVDIALFSAGGS-ISK 83 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCH-HHHcCCCEEEECCCcH-HHH
Confidence 467899999 69999999999987554 343332 22111111111111111 122 4458899999999933 222
Q ss_pred hcchHHHHhcCCCCCEEEEcC
Q 027577 108 GMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~s 128 (221)
.+. .+ ..+.|+.+||.|
T Consensus 84 ~~~-~~---~~~~g~~VIDlS 100 (344)
T PLN02383 84 KFG-PI---AVDKGAVVVDNS 100 (344)
T ss_pred HHH-HH---HHhCCCEEEECC
Confidence 221 11 235689999988
No 352
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.76 E-value=0.0027 Score=45.62 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=43.1
Q ss_pred CCEEEEEccCHHHHHHHHHH-ccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcCC--CCEEEEeCC
Q 027577 36 GKTVGTVGCGRIGKLLLQRL-KPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTP 101 (221)
Q Consensus 36 g~~vgIIG~G~iG~~iA~~l-~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDvVv~~~p 101 (221)
..++.|+|+|+.|++++... ...|+. +.++|.++.... ..-.|+..+.+++++.+. .|+-++++|
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G-~~i~gipV~~~~~~l~~~~~i~iaii~VP 71 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG-KEIGGIPVYGSMDELEEFIEIDIAIITVP 71 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT-SEETTEEEESSHHHHHHHCTTSEEEEES-
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC-cEECCEEeeccHHHhhhhhCCCEEEEEcC
Confidence 45799999999999997544 455665 455666553322 112256555567666655 999999999
No 353
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.75 E-value=0.0049 Score=54.10 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=60.1
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecC--------CHHhhcC------CCC----EE
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE--------DLDTMLP------KCD----IV 96 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~--------~l~ell~------~aD----vV 96 (221)
.|.+|.|+|.|.+|..+++.++..|.+|++.++++...+.++++|+..+- ++.+.+. ..| +|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v 245 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI 245 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence 48899999999999999999999999999998876566666666653211 1111111 133 56
Q ss_pred EEeCCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 97 v~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
+-++.. +. .....++.++++..++.++.
T Consensus 246 ~d~~g~-~~----~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 246 FECSGS-KP----GQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EECCCC-hH----HHHHHHHHHhcCCeEEEECc
Confidence 666542 21 11234667788888888764
No 354
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.74 E-value=0.0032 Score=51.34 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=33.8
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK 69 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~ 69 (221)
..|.+++|.|+|+|.+|..+++.|...|.. +.++|...
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 468999999999999999999999999985 88888653
No 355
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.73 E-value=0.0098 Score=52.32 Aligned_cols=111 Identities=19% Similarity=0.254 Sum_probs=66.4
Q ss_pred CEEEEEccCHHHHHHHHHHcc--------CCCeEE-EEcCCCC---C----hhHH---HhcC-c--eecC--CHHhhc-C
Q 027577 37 KTVGTVGCGRIGKLLLQRLKP--------FNCNLL-YHDRVKM---D----PQLE---KETG-A--KFEE--DLDTML-P 91 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~--------~G~~V~-~~d~~~~---~----~~~~---~~~g-~--~~~~--~l~ell-~ 91 (221)
++|+|+|+|++|+.+++.+.. .+.+|. +.|++.. + .+.. .+.+ + .... ++++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 479999999999999999865 456654 4455421 0 1111 0101 1 1112 455554 4
Q ss_pred CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 027577 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA 148 (221)
Q Consensus 92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~v-d~~al~~al~~g~i~ 148 (221)
++|+|+=|+|.+..-... -.-....|+.|..+|-.+.|.+. .-+.|.+..++++..
T Consensus 81 ~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~ 137 (326)
T PRK06392 81 KPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI 137 (326)
T ss_pred CCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence 689999999743211111 12234557889999999888775 456666766666554
No 356
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.72 E-value=0.0077 Score=50.12 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=57.0
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH---HHhcCceec---CCHHhhcCCCCEEEEeCCCChh
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL---EKETGAKFE---EDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~---~~~~g~~~~---~~l~ell~~aDvVv~~~p~~~~ 105 (221)
..++|++|.|||.|.+|..=++.|..+|.+|.++.+... .+. .....+... .+ ++.+..+++|+.++. +++
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~-~el~~l~~~~~i~~~~r~~~-~~dl~g~~LViaATd-D~~ 97 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS-KEFLDLKKYGNLKLIKGNYD-KEFIKDKHLIVIATD-DEK 97 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC-HHHHHHHhCCCEEEEeCCCC-hHHhCCCcEEEECCC-CHH
Confidence 467899999999999999989999999999999998542 221 111122211 12 234678899988876 222
Q ss_pred hhhcchHHHHhcCCCCCEEEEc
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNN 127 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~ 127 (221)
++.......+.-.+++|+
T Consensus 98 ----vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 98 ----LNNKIRKHCDRLYKLYID 115 (223)
T ss_pred ----HHHHHHHHHHHcCCeEEE
Confidence 344444444443444553
No 357
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.72 E-value=0.0067 Score=55.74 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=58.9
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhc-Cceec--CCHHhhcCCCCEEEEeCCCChhh
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKET-GAKFE--EDLDTMLPKCDIVVVNTPLTEKT 106 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~-g~~~~--~~l~ell~~aDvVv~~~p~~~~t 106 (221)
.+|+|++|.|||.|.+|..=++.|..+|++|.++.+... .+. .... .+... .-.++.++.+++|+.++...+
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~-~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~-- 84 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFI-PQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA-- 84 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCC-HHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH--
Confidence 479999999999999999989999999999999987532 221 1111 22211 112355788999888876433
Q ss_pred hhcchHHHHhcCCCCCEEEEcC
Q 027577 107 RGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~s 128 (221)
++.+.....+...+++|++
T Consensus 85 ---~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 ---VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred ---HhHHHHHHHHHcCcEEEEC
Confidence 3333333344444555553
No 358
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=96.71 E-value=0.0089 Score=52.06 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=62.1
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCC------HHhhcCCCCEEEEeCCCChhhhh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED------LDTMLPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~------l~ell~~aDvVv~~~p~~~~t~~ 108 (221)
.|.++.|.|.|.+|..+++.++.+|.+|++.+++....+.+.+.|+..+-+ .++.-...|+++-+++..
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~----- 243 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSAS----- 243 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCc-----
Confidence 478999999999999999999999999999988765555555566532111 112234578888777622
Q ss_pred cchHHHHhcCCCCCEEEEcCC
Q 027577 109 MFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 109 ~i~~~~~~~mk~ga~lIn~sr 129 (221)
....+.+..++++..+++++.
T Consensus 244 ~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 244 HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred chHHHHHHHhcCCCEEEEEec
Confidence 123445677777778877754
No 359
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.70 E-value=0.0074 Score=53.47 Aligned_cols=90 Identities=23% Similarity=0.282 Sum_probs=64.7
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHh-cCceecCCH-H--------hhc--CCCCEEEEeCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFEEDL-D--------TML--PKCDIVVVNTP 101 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~~~l-~--------ell--~~aDvVv~~~p 101 (221)
.+.+|.|+|.|.||...+..++.+|. +|++.|+++.+.+.+++ .+.....+. + ++- ..+|+++-|+.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 34499999999999999999999996 58888998877777777 454432221 1 222 24999999987
Q ss_pred CChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
++. .-.+.+..++++..++.++=
T Consensus 248 -~~~----~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 248 -SPP----ALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred -CHH----HHHHHHHHhcCCCEEEEEec
Confidence 222 22456777888888888774
No 360
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.70 E-value=0.0064 Score=52.55 Aligned_cols=87 Identities=13% Similarity=0.011 Sum_probs=56.6
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~ 113 (221)
.|+++.|+|.|.+|...++.++.+|++ |++.+++....+.+....+ ++.-++.-...|+|+-++.. +. .-..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~-~~----~~~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGD-PS----LIDT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCC-HH----HHHH
Confidence 578899999999999999999999997 5566664433333322211 21111112357988888762 11 1234
Q ss_pred HHhcCCCCCEEEEcC
Q 027577 114 RIAKMKKGVLIVNNA 128 (221)
Q Consensus 114 ~~~~mk~ga~lIn~s 128 (221)
.++.++++..++.++
T Consensus 217 ~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 217 LVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHhhhcCcEEEEEe
Confidence 677888888888775
No 361
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.69 E-value=0.0059 Score=55.40 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=52.3
Q ss_pred ccCCCCCEEEEEcc----------CHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEe
Q 027577 31 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 31 ~~~l~g~~vgIIG~----------G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~ 99 (221)
+.++.|++|+|+|+ .+-+..+++.|...| .+|.+||+.-..........+. ..++++.++.||+|+++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~-~~~~~~~~~~ad~vvi~ 393 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVT-LVSLDEALATADVLVML 393 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCcee-eCCHHHHHhCCCEEEEC
Confidence 34688999999996 346778999999986 9999999863221111011222 36889999999999999
Q ss_pred CCC
Q 027577 100 TPL 102 (221)
Q Consensus 100 ~p~ 102 (221)
++.
T Consensus 394 t~~ 396 (415)
T PRK11064 394 VDH 396 (415)
T ss_pred CCC
Confidence 983
No 362
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.69 E-value=0.012 Score=51.15 Aligned_cols=89 Identities=17% Similarity=0.184 Sum_probs=55.7
Q ss_pred EEEEccCHHHHHHHHHHccCC--CeEEEEcCCCCChhH-HHhc----------CceecCCHHhhcCCCCEEEEeCCCChh
Q 027577 39 VGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKET----------GAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 39 vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~-~~~~----------g~~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
|+|||.|.+|..+|..+...| .++.++|++....+. ..++ .+....+ .+.+++||+|+++......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998877 479999986532211 1110 0111233 4578999999999763211
Q ss_pred ---h--------hhcch--HHHHhcCCCCCEEEEcC
Q 027577 106 ---T--------RGMFD--KDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 106 ---t--------~~~i~--~~~~~~mk~ga~lIn~s 128 (221)
+ ..++. ...+....|++++|+++
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 1 11111 11233345789999987
No 363
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=96.67 E-value=0.013 Score=51.84 Aligned_cols=90 Identities=13% Similarity=0.190 Sum_probs=62.0
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhcCceec---C---CHHhhcCCCCEEEEeCCCChhhh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---E---DLDTMLPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~---~---~l~ell~~aDvVv~~~p~~~~t~ 107 (221)
.|++|.|.|.|.+|...++.++.+|.+|++.+.+... .+.++++|+..+ . .+.+.....|+|+-++.. +.+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~-~~~- 260 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSA-VHA- 260 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCC-HHH-
Confidence 5889999999999999999999999998887765433 234456676422 1 122333457988877652 111
Q ss_pred hcchHHHHhcCCCCCEEEEcCC
Q 027577 108 GMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~sr 129 (221)
+ .+.++.++++..++.++.
T Consensus 261 --~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 261 --L-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --H-HHHHHHhcCCcEEEEeCC
Confidence 2 335677889998888864
No 364
>PRK05442 malate dehydrogenase; Provisional
Probab=96.66 E-value=0.027 Score=49.56 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=58.6
Q ss_pred CEEEEEcc-CHHHHHHHHHHccCCC-------eEEEEcCCCCC-------hhHHHhc-----CceecCCHHhhcCCCCEE
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD-------PQLEKET-----GAKFEEDLDTMLPKCDIV 96 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~-------~~~~~~~-----g~~~~~~l~ell~~aDvV 96 (221)
+||+|||. |.+|..+|..|...|. ++..+|..+.. .+..... .+....+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998765443 78999974321 1111110 122234556788999999
Q ss_pred EEeCCC--Ch-hhhh-cc--h----HH---HHhc-CCCCCEEEEcCCCCccCHHH
Q 027577 97 VVNTPL--TE-KTRG-MF--D----KD---RIAK-MKKGVLIVNNARGAIMDTQA 137 (221)
Q Consensus 97 v~~~p~--~~-~t~~-~i--~----~~---~~~~-mk~ga~lIn~srg~~vd~~a 137 (221)
+++.-. .+ +++. ++ + ++ .+.. -++.+++|.++ .++|.-.
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 137 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA 137 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence 998642 11 1111 11 1 11 1222 33688999987 5555444
No 365
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.66 E-value=0.0087 Score=49.40 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=33.3
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV 68 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~ 68 (221)
..|..++|+|||+|.+|..+|+.|...|.. +.++|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 468999999999999999999999999985 8888875
No 366
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.65 E-value=0.014 Score=51.26 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=44.5
Q ss_pred CEEEEEcc-CHHHHHHHHHHccCCC-------eEEEEcCCCCC---hhHHHh----c-----CceecCCHHhhcCCCCEE
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---PQLEKE----T-----GAKFEEDLDTMLPKCDIV 96 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~---~~~~~~----~-----g~~~~~~l~ell~~aDvV 96 (221)
.||+|||. |.+|..+|..|...|. ++..+|..... ...+.+ . ++....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999876664 79999985311 111111 0 112223456788999999
Q ss_pred EEeCC
Q 027577 97 VVNTP 101 (221)
Q Consensus 97 v~~~p 101 (221)
+++.-
T Consensus 84 VitAG 88 (323)
T TIGR01759 84 LLVGA 88 (323)
T ss_pred EEeCC
Confidence 99864
No 367
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=96.65 E-value=0.01 Score=53.03 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=60.1
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhcCceec---CC---HHhhcCCCCEEEEeCCCChhhh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~---~~---l~ell~~aDvVv~~~p~~~~t~ 107 (221)
.|++|.|.|.|.+|...++.++.+|.+|++.+++... .+.++++|+..+ .+ +.+.....|+|+-++.. +.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~-~~-- 254 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSA-EH-- 254 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCc-HH--
Confidence 5899999999999999999999999999888765432 345556666422 11 12223347888877652 11
Q ss_pred hcchHHHHhcCCCCCEEEEcC
Q 027577 108 GMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 108 ~~i~~~~~~~mk~ga~lIn~s 128 (221)
.-...++.++++..++.++
T Consensus 255 --~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 255 --ALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred --HHHHHHHhhcCCCEEEEEc
Confidence 1133456677888887775
No 368
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.64 E-value=0.0042 Score=47.72 Aligned_cols=85 Identities=15% Similarity=0.247 Sum_probs=48.9
Q ss_pred EEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcC
Q 027577 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118 (221)
Q Consensus 39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~m 118 (221)
+-|+|.|.+++++++.++..|++|.++|+++.. +..++-+ .+.+ ..... +.+ .+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~------------------~~~~~~~-~~~~----~~~~~--~~~-~~ 54 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER------------------FPEADEV-ICIP----PDDIL--EDL-EI 54 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-------------------TTSSEE-ECSH----HHHHH--HHC--S
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc------------------cCCCCcc-EecC----hHHHH--hcc-CC
Confidence 468999999999999999999999999986321 1133332 2222 01111 111 35
Q ss_pred CCCCEEEEcCCCCccCHHHHHHHHHhCCceEEE
Q 027577 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 151 (221)
Q Consensus 119 k~ga~lIn~srg~~vd~~al~~al~~g~i~~a~ 151 (221)
.+++.+| ++++.-.|.+.|..+|+. .....+
T Consensus 55 ~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG 85 (136)
T PF13478_consen 55 DPNTAVV-MTHDHELDAEALEAALAS-PARYIG 85 (136)
T ss_dssp -TT-EEE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred CCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence 5666665 788888888888888776 344333
No 369
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.62 E-value=0.014 Score=51.07 Aligned_cols=92 Identities=28% Similarity=0.319 Sum_probs=57.6
Q ss_pred CEEEEEcc-CHHHHHHHHHHccCCC--eEEEEcCCCCCh----hHHHhc---Cceec---CCHHhhcCCCCEEEEeCCCC
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP----QLEKET---GAKFE---EDLDTMLPKCDIVVVNTPLT 103 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~----~~~~~~---g~~~~---~~l~ell~~aDvVv~~~p~~ 103 (221)
+||+|||. |++|..+|..+...|. ++..+|.. ... +..... .+... +++.+.+++||+|+++....
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 58999999 9999999999987774 69999976 221 111110 12211 23457789999999986431
Q ss_pred --h-hhhh-cc--hH-------HHHhcCCCCCEEEEcCC
Q 027577 104 --E-KTRG-MF--DK-------DRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 104 --~-~t~~-~i--~~-------~~~~~mk~ga~lIn~sr 129 (221)
| +++- ++ +. +.+....|++++|+++-
T Consensus 80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 2 1111 11 11 12333468999999864
No 370
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=96.62 E-value=0.018 Score=51.28 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=50.3
Q ss_pred CCCCCEEEEEccC--------HHHHHHHHHHccCCCeEEEEcCCCC--ChhH-------HHhcCc--eecCCHHhhcCCC
Q 027577 33 DLEGKTVGTVGCG--------RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETGA--KFEEDLDTMLPKC 93 (221)
Q Consensus 33 ~l~g~~vgIIG~G--------~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g~--~~~~~l~ell~~a 93 (221)
.|.|+||+|+|.| ++.++++..+..+|++|.+..|... ..+. +++.|. ...++++++++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999743 5668888899999999999987632 2222 123343 3568999999999
Q ss_pred CEEEEeC
Q 027577 94 DIVVVNT 100 (221)
Q Consensus 94 DvVv~~~ 100 (221)
|+|..-.
T Consensus 247 Dvvyt~~ 253 (357)
T TIGR03316 247 DIVYPKS 253 (357)
T ss_pred CEEEECC
Confidence 9998763
No 371
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.62 E-value=0.012 Score=51.52 Aligned_cols=96 Identities=22% Similarity=0.243 Sum_probs=58.4
Q ss_pred EEEEEcc-CHHHHHHHHHHccCCC--eEEEEcCCCCCh---hHHHh---cCceec---CCHHhhcCCCCEEEEeCCCCh-
Q 027577 38 TVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP---QLEKE---TGAKFE---EDLDTMLPKCDIVVVNTPLTE- 104 (221)
Q Consensus 38 ~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~---~~~~~---~g~~~~---~~l~ell~~aDvVv~~~p~~~- 104 (221)
||+|||. |++|..+|..|...+. ++..+|..+... +.... ..+..+ +++.+.+++||+|+++.....
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 6899999 9999999998876554 799999865211 11111 012211 134678999999999875321
Q ss_pred --h--------hhhcch--HHHHhcCCCCCEEEEcCCCCccCH
Q 027577 105 --K--------TRGMFD--KDRIAKMKKGVLIVNNARGAIMDT 135 (221)
Q Consensus 105 --~--------t~~~i~--~~~~~~mk~ga~lIn~srg~~vd~ 135 (221)
. +..++. .+.+..-.|++++|+++- ++|.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv 121 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS 121 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence 1 111111 012333468999999864 4553
No 372
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.62 E-value=0.0082 Score=52.90 Aligned_cols=88 Identities=22% Similarity=0.297 Sum_probs=51.8
Q ss_pred CCEEEEEc-cCHHHHHHHHHHccCCC---eEEEEcCCCCChhHHHhcC--ceecCCHH-hhcCCCCEEEEeCCCChhhhh
Q 027577 36 GKTVGTVG-CGRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKETG--AKFEEDLD-TMLPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 36 g~~vgIIG-~G~iG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~g--~~~~~~l~-ell~~aDvVv~~~p~~~~t~~ 108 (221)
+++|+|+| .|.+|+.+++.|...|+ ++.+..+.....+...-.+ +... +++ ..++.+|+|++|+|.. .+..
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~-d~~~~~~~~vDvVf~A~g~g-~s~~ 78 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVE-DLTTFDFSGVDIALFSAGGS-VSKK 78 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEe-eCCHHHHcCCCEEEECCChH-HHHH
Confidence 46899999 69999999999988665 3455543321111111111 1211 222 3347899999999832 2222
Q ss_pred cchHHHHhcCCCCCEEEEcCC
Q 027577 109 MFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 109 ~i~~~~~~~mk~ga~lIn~sr 129 (221)
+. . ..++.|+.+||.|.
T Consensus 79 ~~-~---~~~~~G~~VIDlS~ 95 (334)
T PRK14874 79 YA-P---KAAAAGAVVIDNSS 95 (334)
T ss_pred HH-H---HHHhCCCEEEECCc
Confidence 11 1 12357889998874
No 373
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.61 E-value=0.0056 Score=53.11 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=56.9
Q ss_pred EEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCC-----------hhH--------------HHhc--Cce--ec----
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-----------PQL--------------EKET--GAK--FE---- 83 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-----------~~~--------------~~~~--g~~--~~---- 83 (221)
+|.|||+|.+|..+|+.|...|. ++.++|..... .+. .++. +++ .+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999999998 47777643210 000 0111 111 11
Q ss_pred -------------------CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 84 -------------------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 84 -------------------~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
+.++++++++|+|+.++ .+.+++.+++..... .+..+|+.+-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~---~~k~~I~aal 141 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAA---KNKLVINAAL 141 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHH---hCCcEEEEEe
Confidence 12568899999999998 577788777654443 2346676543
No 374
>PLN02602 lactate dehydrogenase
Probab=96.61 E-value=0.0092 Score=52.98 Aligned_cols=91 Identities=18% Similarity=0.279 Sum_probs=56.6
Q ss_pred CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh---cC-cee--cCCHHhhcCCCCEEEEeCCCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE---TG-AKF--EEDLDTMLPKCDIVVVNTPLT 103 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~---~g-~~~--~~~l~ell~~aDvVv~~~p~~ 103 (221)
+||+|||.|.+|..+|..+...|. ++..+|......+ .... .+ ... ..+.++ +++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCCCC
Confidence 699999999999999998876665 6999998653221 1111 01 121 134444 89999999985431
Q ss_pred --h-hhh-hcc--hH-------HHHhcCCCCCEEEEcC
Q 027577 104 --E-KTR-GMF--DK-------DRIAKMKKGVLIVNNA 128 (221)
Q Consensus 104 --~-~t~-~~i--~~-------~~~~~mk~ga~lIn~s 128 (221)
+ .++ .++ +. +.+....+.+++|+++
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 122 111 11 1233456789999987
No 375
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.59 E-value=0.008 Score=53.25 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=62.3
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-C----CHHh----hcC-CCCEEEEeCCCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-E----DLDT----MLP-KCDIVVVNTPLT 103 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-~----~l~e----ll~-~aDvVv~~~p~~ 103 (221)
.|.+|.|.|.|.+|...++.++..|. +|++.++++...+.++++|+..+ + ++.+ +.. ..|+|+-++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 48899999999999999999999999 59999887766667777776422 1 1111 111 378888777521
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
. .-...+..++++..++.++-
T Consensus 271 -~----~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 271 -P----ALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -H----HHHHHHHHHhcCCEEEEEcc
Confidence 1 12334567788888887763
No 376
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=96.57 E-value=0.016 Score=51.16 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=50.2
Q ss_pred CCCCCEEEEEcc---CHHHHHHHHHHc-cCCCeEEEEcCCCC--ChhH---HHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577 33 DLEGKTVGTVGC---GRIGKLLLQRLK-PFNCNLLYHDRVKM--DPQL---EKETG--AKFEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 33 ~l~g~~vgIIG~---G~iG~~iA~~l~-~~G~~V~~~d~~~~--~~~~---~~~~g--~~~~~~l~ell~~aDvVv~~ 99 (221)
.+.|+||++||- +++..+++..+. -+|++|.+..|..- +.+. ++..| +...++++++++++|+|...
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 589999999996 688999998766 45999999887542 2222 22333 44568999999999999874
No 377
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.55 E-value=0.014 Score=53.16 Aligned_cols=114 Identities=16% Similarity=0.199 Sum_probs=70.6
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHh--cCceec--CCHHhhcCCCCEEEEeCCCC---
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFE--EDLDTMLPKCDIVVVNTPLT--- 103 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~--~g~~~~--~~l~ell~~aDvVv~~~p~~--- 103 (221)
++.+++|.|+|.|.+|.++|+.|...|++|.++|...... +..++ .|+... ...+..+.++|+|+...--.
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~ 81 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQ 81 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCC
Confidence 3678999999999999999999999999999999755332 12222 255432 11234456899998864322
Q ss_pred hhhhh-------cc-hHHHHhc-CC---CCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577 104 EKTRG-------MF-DKDRIAK-MK---KGVLIVNNARGAIMDTQAVVDACSSGH 146 (221)
Q Consensus 104 ~~t~~-------~i-~~~~~~~-mk---~ga~lIn~srg~~vd~~al~~al~~g~ 146 (221)
|.... ++ ..+.+.. ++ ...+-|.-+.|+--...-+...|+...
T Consensus 82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 22111 22 1233323 32 234556666788777777777777533
No 378
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=96.55 E-value=0.024 Score=51.14 Aligned_cols=67 Identities=16% Similarity=0.323 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcc-----C---HHHHHHHHHHccCCCeEEEEcCCCC--ChhH-------HHhcC--ceecCCHHhhcCCC
Q 027577 33 DLEGKTVGTVGC-----G---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETG--AKFEEDLDTMLPKC 93 (221)
Q Consensus 33 ~l~g~~vgIIG~-----G---~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g--~~~~~~l~ell~~a 93 (221)
.+.|+||+|+|. | ++.++++..+..+|++|.+..|..- .++. +++.| +...++++++++++
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 378999999985 5 6789999999999999999988632 2221 22234 44568999999999
Q ss_pred CEEEEe
Q 027577 94 DIVVVN 99 (221)
Q Consensus 94 DvVv~~ 99 (221)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999876
No 379
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=96.54 E-value=0.0092 Score=51.53 Aligned_cols=92 Identities=24% Similarity=0.217 Sum_probs=61.6
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCcee-cC----CHH--h--hcCCCCEEEEeCCCCh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKF-EE----DLD--T--MLPKCDIVVVNTPLTE 104 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~-~~----~l~--e--ll~~aDvVv~~~p~~~ 104 (221)
.|.+|.|+|.|.+|+.+++.++..|++ |++.+++....+.+.+.++.. +. +.. . .-+..|+++-+++..
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~- 237 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP- 237 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh-
Confidence 578999999999999999999999998 888887654444445555421 11 110 0 124578888776521
Q ss_pred hhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 105 KTRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
......+..|+++..+++++...
T Consensus 238 ----~~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 238 ----KTLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred ----HHHHHHHHHHhcCCEEEEEecCC
Confidence 12344567778888888876543
No 380
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.54 E-value=0.0094 Score=47.61 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=51.0
Q ss_pred EEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCC------------------hh----HHHhc--Ccee--------cC
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMD------------------PQ----LEKET--GAKF--------EE 84 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~------------------~~----~~~~~--g~~~--------~~ 84 (221)
+|+|||+|.+|..+++.|...|.. +.++|..... .+ ...+. .++. ..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 589999999999999999999984 8888865310 00 01111 1111 12
Q ss_pred CHHhhcCCCCEEEEeCCCChhhhhcchHHHHh
Q 027577 85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116 (221)
Q Consensus 85 ~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~ 116 (221)
+++++++++|+|+.|+ .+.+++..+.....+
T Consensus 81 ~~~~~l~~~DlVi~~~-d~~~~r~~i~~~~~~ 111 (174)
T cd01487 81 NLEGLFGDCDIVVEAF-DNAETKAMLAESLLG 111 (174)
T ss_pred hHHHHhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 3456788899888884 466776656555544
No 381
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.53 E-value=0.0053 Score=49.49 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=45.6
Q ss_pred CEEEEEccCHHHHHHHHH--HccCCCeE-EEEcCCCCChh-HHHhcCceecCCHHhhcC--CCCEEEEeCCC
Q 027577 37 KTVGTVGCGRIGKLLLQR--LKPFNCNL-LYHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPL 102 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~--l~~~G~~V-~~~d~~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVv~~~p~ 102 (221)
-++.|||.|++|++++.. .+..|+++ .++|..+.... ......+...+++++.++ +.|+.++|+|.
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 368999999999999875 35788984 56887543111 111122344567788786 68899999993
No 382
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.53 E-value=0.022 Score=51.91 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=62.1
Q ss_pred ccCCCCCEEEEEcc----------CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeC
Q 027577 31 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 100 (221)
Q Consensus 31 ~~~l~g~~vgIIG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~ 100 (221)
+..+.|++|+|+|+ .+-+..+++.|...|.+|.+||+.-...+.....+.... + ...++.+|+|++++
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~-~-~~~~~~ad~vvi~t 386 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPV-S-EVKSSHYDAIIVAV 386 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccc-h-hhhhcCCCEEEEcc
Confidence 34689999999997 356888999999999999999986322222222332111 1 22467899999999
Q ss_pred CCChhhhhcchHHHHhcCCCCCEEEEcCCCCc
Q 027577 101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI 132 (221)
Q Consensus 101 p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~ 132 (221)
.-. +.+.+-.+...+.|+...+|||+ |+-+
T Consensus 387 ~h~-~f~~~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 387 GHQ-QFKQMGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred CCH-HhhcCCHHHHHHhcCCCCEEEEC-CCCC
Confidence 733 33332222333445545688884 5443
No 383
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=96.52 E-value=0.0097 Score=56.26 Aligned_cols=70 Identities=19% Similarity=0.336 Sum_probs=49.5
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhcCc-eecCC---HHhhcCCCCEEEEeCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGA-KFEED---LDTMLPKCDIVVVNTP 101 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~g~-~~~~~---l~ell~~aDvVv~~~p 101 (221)
..+..|||||||-|..|+.+++.++.+|++|+++|+.+..+.. ....-+ ..+.+ +.++++++|+|+.+..
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 3588999999999999999999999999999999986543221 111111 11234 4556678999877644
No 384
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.51 E-value=0.042 Score=49.54 Aligned_cols=155 Identities=16% Similarity=0.179 Sum_probs=97.3
Q ss_pred cccCCCCCEEEEEccCHHHHHHHHHHccCCC---eEEEEcCCCCC---h-hH-HHhcC-------ceecCCHHhhcCCCC
Q 027577 30 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKMD---P-QL-EKETG-------AKFEEDLDTMLPKCD 94 (221)
Q Consensus 30 ~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~---~V~~~d~~~~~---~-~~-~~~~g-------~~~~~~l~ell~~aD 94 (221)
.+..|+..||.+.|.|.-|-++++.+.+.|+ +|+.+|+...- . +. ..... ...... ++.+..+|
T Consensus 193 ~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~ad 271 (432)
T COG0281 193 TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGAD 271 (432)
T ss_pred hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCC
Confidence 3567899999999999999999999999998 59999986421 1 10 00000 001111 44778899
Q ss_pred EEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC-CceEEEeeCCCCCCCCCCCCCCCCCCeE
Q 027577 95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG-HIAGYSGDVWNPQPAPKDHPWRYMPNQA 173 (221)
Q Consensus 95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g-~i~~a~lDV~~~ep~~~~~~l~~~~n~~ 173 (221)
+++=+.. .+.+.++.++.|.++.+|.=+|.-.+--....+.....| .|.+ ..-|. .|- +..|++
T Consensus 272 v~iG~S~-----~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaiva------TGrsd---~Pn-QvNNvL 336 (432)
T COG0281 272 VLIGVSG-----VGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEWGDGAAIVA------TGRSD---YPN-QVNNVL 336 (432)
T ss_pred EEEEcCC-----CCCcCHHHHHHhccCCEEeecCCCCccCCHHHHhhcCCCCEEEE------eCCCC---Ccc-ccccee
Confidence 8876543 288999999999999999988876542222222222222 2331 11222 222 678999
Q ss_pred ECCCCCcCCHH-------HHHHHHHHHHHHHHHc
Q 027577 174 MTPHVSGTTID-------LRYAAGVKDMLDRYFK 200 (221)
Q Consensus 174 ~tPH~a~~t~~-------~~~~~~~~~~~~~~~~ 200 (221)
+-|-|+-...+ +.|.....+.|..+..
T Consensus 337 ~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~ 370 (432)
T COG0281 337 IFPGIFRGALDVRAKTITDEMKIAAAEAIADLAR 370 (432)
T ss_pred EcchhhhhhHhhccccCCHHHHHHHHHHHHhhcc
Confidence 99999643333 4444445566666654
No 385
>PLN00106 malate dehydrogenase
Probab=96.51 E-value=0.0077 Score=52.90 Aligned_cols=96 Identities=22% Similarity=0.270 Sum_probs=59.1
Q ss_pred CCCEEEEEcc-CHHHHHHHHHHccCCC--eEEEEcCCCCCh---hHHHh---cCce---ecCCHHhhcCCCCEEEEeCCC
Q 027577 35 EGKTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP---QLEKE---TGAK---FEEDLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~---~~~~~---~g~~---~~~~l~ell~~aDvVv~~~p~ 102 (221)
..+||+|||. |++|..+|..|...+. ++..+|..+... +.... ..+. ..+++.+.+++||+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 3569999999 9999999999975554 799999865221 11110 1121 123457889999999998643
Q ss_pred --Ch-hhhh-cc------hH---HHHhcCCCCCEEEEcCCC
Q 027577 103 --TE-KTRG-MF------DK---DRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 103 --~~-~t~~-~i------~~---~~~~~mk~ga~lIn~srg 130 (221)
.+ .++. ++ -. +.+....+.+++++++--
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNP 137 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNP 137 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 11 1111 11 11 123334578899988653
No 386
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.50 E-value=0.017 Score=50.26 Aligned_cols=53 Identities=23% Similarity=0.163 Sum_probs=45.1
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecCCHH
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLD 87 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~ 87 (221)
.|.+++|.|+|.+|.+++..++..|. +|+++|.++.+-+.++++|+..+-+..
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh
Confidence 58999999999999999999999997 699999988777788888876543444
No 387
>PLN02740 Alcohol dehydrogenase-like
Probab=96.49 E-value=0.011 Score=52.63 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=59.7
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecC-------CHHh----hcC-CCCEEEEeCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDT----MLP-KCDIVVVNTP 101 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~-------~l~e----ll~-~aDvVv~~~p 101 (221)
.|.+|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|+..+- ++.+ +.. ..|+|+-++.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G 277 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAG 277 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 58899999999999999999999999 599998877666777777753211 1222 111 4788877765
Q ss_pred CChhhhhcchHHHHhcCCCC-CEEEEcC
Q 027577 102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA 128 (221)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~g-a~lIn~s 128 (221)
. +. .-...+..++++ ..++.++
T Consensus 278 ~-~~----~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 278 N-VE----VLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred C-hH----HHHHHHHhhhcCCCEEEEEc
Confidence 2 11 123445566664 6666655
No 388
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.48 E-value=0.0051 Score=50.76 Aligned_cols=65 Identities=23% Similarity=0.227 Sum_probs=49.3
Q ss_pred EEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCC--hhHHHhcCceec-------CCHHhhcCCCCEEEEeCCCC
Q 027577 39 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD--PQLEKETGAKFE-------EDLDTMLPKCDIVVVNTPLT 103 (221)
Q Consensus 39 vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~--~~~~~~~g~~~~-------~~l~ell~~aDvVv~~~p~~ 103 (221)
|.|+|. |.+|+.+++.|...+++|.+.-|+..+ .+.++..|+..+ +++.++++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 679995 999999999999999999999886522 223344565421 45667899999999999843
No 389
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.47 E-value=0.0089 Score=55.04 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=67.8
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC-Chh---HHHhcCcee-cCCHHhhcCCCCEEEEeC--C-CChh
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQ---LEKETGAKF-EEDLDTMLPKCDIVVVNT--P-LTEK 105 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~---~~~~~g~~~-~~~l~ell~~aDvVv~~~--p-~~~~ 105 (221)
+.|++|+|+|+|.-|.+.|+.|...|++|+++|.... ... .+++.+... .....+.+.++|+||..- | ..|.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 5689999999999999999999999999999996432 111 122212111 112235667899988764 2 1221
Q ss_pred h-------hhcchHHH--Hhc-CC-----CCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 106 T-------RGMFDKDR--IAK-MK-----KGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 106 t-------~~~i~~~~--~~~-mk-----~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
. ..++.+-. +.. ++ ...+-|.-+.|+--...-+.+.|+.
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 11233222 222 32 1345566667887777777777765
No 390
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=96.46 E-value=0.0099 Score=51.45 Aligned_cols=89 Identities=22% Similarity=0.182 Sum_probs=62.4
Q ss_pred CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec------CCHHhhc-----CCCCEEEEeCCC
Q 027577 35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTML-----PKCDIVVVNTPL 102 (221)
Q Consensus 35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~ell-----~~aDvVv~~~p~ 102 (221)
.|.+|.|.| .|.+|...++.++..|.+|++.+++....+.++++|+..+ .++.+.+ ...|+|+-++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G- 216 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG- 216 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC-
Confidence 588999999 5999999999999999999988876655566666675321 1222222 23678877665
Q ss_pred ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 103 TEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
.+ .+ ...++.++++..+|..+.
T Consensus 217 ~~----~~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 217 GE----FS-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred HH----HH-HHHHHHhCcCcEEEEecc
Confidence 11 12 456778888888888764
No 391
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.46 E-value=0.012 Score=51.78 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=61.7
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-----CCHH----hhcC--CCCEEEEeCCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLD----TMLP--KCDIVVVNTPL 102 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~----ell~--~aDvVv~~~p~ 102 (221)
.|++|.|.|.|.+|...++.++..|.+ |++.+++....+.++++|...+ .+.. ++.. ..|+|+-++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~ 255 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 489999999999999999999999985 8888887666666677765321 1111 1222 37888877652
Q ss_pred ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 103 TEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
+.+ + ...+..++++..+|.++-
T Consensus 256 -~~~---~-~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 256 -PET---Y-KQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -HHH---H-HHHHHHhccCCEEEEECC
Confidence 211 2 234566788888887764
No 392
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=96.46 E-value=0.014 Score=50.26 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=62.1
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc--CCCCEEEEeCCCChhhhhcch
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell--~~aDvVv~~~p~~~~t~~~i~ 111 (221)
-.|.+|.|.|.|.+|..+++.++..|.+|++.+.++...+.++++|+....+..+.. ...|+++-+..... ..
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~-----~~ 228 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPS-----GL 228 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChH-----HH
Confidence 358899999999999999999999999998888766555666667764332322222 34788887764211 12
Q ss_pred HHHHhcCCCCCEEEEcC
Q 027577 112 KDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~s 128 (221)
...++.++++..++..+
T Consensus 229 ~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 229 ELALRLVRPRGTVVLKS 245 (319)
T ss_pred HHHHHHhhcCCEEEEEc
Confidence 34456677777777644
No 393
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=96.45 E-value=0.013 Score=50.67 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=62.0
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-CC----H-HhhcCCCCEEEEeCCCChhhhh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-ED----L-DTMLPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~----l-~ell~~aDvVv~~~p~~~~t~~ 108 (221)
.|.+|.|+|.|.+|+.+++.++..|.+|++.+++....+...+.|.... .. . ...-...|+++-++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 5789999999999999999999999999998887655555555554211 11 1 111235788887764211
Q ss_pred cchHHHHhcCCCCCEEEEcCC
Q 027577 109 MFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 109 ~i~~~~~~~mk~ga~lIn~sr 129 (221)
...+.+..|+++..+++++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 23456778888888888863
No 394
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.45 E-value=0.025 Score=49.71 Aligned_cols=99 Identities=20% Similarity=0.229 Sum_probs=59.2
Q ss_pred CEEEEEcc-CHHHHHHHHHHccCCC-------eEEEEcCCC--CChh-----HHHhc-----CceecCCHHhhcCCCCEE
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVK--MDPQ-----LEKET-----GAKFEEDLDTMLPKCDIV 96 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~--~~~~-----~~~~~-----g~~~~~~l~ell~~aDvV 96 (221)
.||+|+|. |.+|..+|..|...|. ++..+|+.. ...+ ..... ++....+..+.+++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 37999999 9999999998876443 588999864 2111 11110 112224567889999999
Q ss_pred EEeCCC--Ch-hhh--------hcch--HHHHhcC-CCCCEEEEcCCCCccCHHH
Q 027577 97 VVNTPL--TE-KTR--------GMFD--KDRIAKM-KKGVLIVNNARGAIMDTQA 137 (221)
Q Consensus 97 v~~~p~--~~-~t~--------~~i~--~~~~~~m-k~ga~lIn~srg~~vd~~a 137 (221)
+++.-. .+ +++ .++. ...+... +|++++|.++ .++|.-.
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 133 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA 133 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence 987642 11 111 1111 0123334 5788888885 6666444
No 395
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=96.44 E-value=0.015 Score=50.58 Aligned_cols=90 Identities=17% Similarity=0.219 Sum_probs=59.7
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhh---cCCCCEEEEeCCCChhh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM---LPKCDIVVVNTPLTEKT 106 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~el---l~~aDvVv~~~p~~~~t 106 (221)
.|.+|.|.|.|.+|..+++.++.+|.+|++.+++....+.+.++|+..+ .++.+. +...|+++-++....
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~-- 240 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAK-- 240 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchH--
Confidence 5789999999999999999999999999999887655556666665321 112111 134677776543111
Q ss_pred hhcchHHHHhcCCCCCEEEEcCC
Q 027577 107 RGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
.....+..++++..+++++.
T Consensus 241 ---~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 241 ---AISALVGGLAPRGKLLILGA 260 (333)
T ss_pred ---HHHHHHHHcccCCEEEEEec
Confidence 22334566777777777654
No 396
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.44 E-value=0.037 Score=50.45 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=67.8
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHh--cCceecC--CHHhhcCCCCEEEEeCCC---Chh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFEE--DLDTMLPKCDIVVVNTPL---TEK 105 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~--~g~~~~~--~l~ell~~aDvVv~~~p~---~~~ 105 (221)
++-+|+|+|+|..|.++|+.|...|++|.++|...... +.+++ .|+.... .-.+.+.++|+|+..-.- .|.
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~ 84 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPA 84 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHH
Confidence 35689999999999999999999999999999754321 22333 2655421 123456789988775421 221
Q ss_pred hh-------hcch-HHHHhc-CCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 106 TR-------GMFD-KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 106 t~-------~~i~-~~~~~~-mk~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
.. .++. .+.+.. ++...+-|--+.|+--...-+...|+.
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 11 1222 233322 333345566667887777767777765
No 397
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=96.44 E-value=0.033 Score=42.76 Aligned_cols=98 Identities=14% Similarity=0.246 Sum_probs=69.5
Q ss_pred HHHHHHccCCCeEEEEcCCCC----ChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEE
Q 027577 50 LLLQRLKPFNCNLLYHDRVKM----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV 125 (221)
Q Consensus 50 ~iA~~l~~~G~~V~~~d~~~~----~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI 125 (221)
..++.|...|++|++=.-... +.+...+.|+...++.++++++||+|+-.-|. ..+.++.|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p--------~~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPP--------SEEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCC--------CHHHHhhcCCCcEEE
Confidence 456778888999987654321 23444567888887778999999999877663 245677899999999
Q ss_pred EcCCCCccCHHHHHHHHHhCCceEEEeeCCCC
Q 027577 126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157 (221)
Q Consensus 126 n~srg~~vd~~al~~al~~g~i~~a~lDV~~~ 157 (221)
....-. ....+++.|.+.++...++|....
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 876544 588899999999999888875543
No 398
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=96.42 E-value=0.025 Score=51.29 Aligned_cols=108 Identities=12% Similarity=0.155 Sum_probs=68.1
Q ss_pred EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--h---HHH-hcCceec--CCHHhhcCCCCEEEEeCCC---Chhh
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--Q---LEK-ETGAKFE--EDLDTMLPKCDIVVVNTPL---TEKT 106 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~---~~~-~~g~~~~--~~l~ell~~aDvVv~~~p~---~~~t 106 (221)
+|.|||+|..|.++|+.|+..|++|.++|...... . ..+ ..|+... .+ .+.+.++|+|+....- +|+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 47899999999999999999999999999754321 1 122 2466532 23 4556789988775422 2221
Q ss_pred h-------hcchH-HHH-hcCCCCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577 107 R-------GMFDK-DRI-AKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146 (221)
Q Consensus 107 ~-------~~i~~-~~~-~~mk~ga~lIn~srg~~vd~~al~~al~~g~ 146 (221)
. .++.+ +.+ ..++...+-|.-+.|+--...-+...|+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 12222 222 2233345556667888877777777777644
No 399
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.41 E-value=0.022 Score=50.09 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=57.6
Q ss_pred EEEEEcc-CHHHHHHHHHHccCCC-------eEEEEcCCCCC--h-----hHHHh-----cCceecCCHHhhcCCCCEEE
Q 027577 38 TVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD--P-----QLEKE-----TGAKFEEDLDTMLPKCDIVV 97 (221)
Q Consensus 38 ~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~--~-----~~~~~-----~g~~~~~~l~ell~~aDvVv 97 (221)
+|+|||. |.+|..+|..|...+. ++..+|+.+.. . +.... ..+....+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999876544 58899975421 1 00000 01111124467889999999
Q ss_pred EeCCCCh---hhh-hcc--h----H---HHHhcC-CCCCEEEEcCCCCccCHHH
Q 027577 98 VNTPLTE---KTR-GMF--D----K---DRIAKM-KKGVLIVNNARGAIMDTQA 137 (221)
Q Consensus 98 ~~~p~~~---~t~-~~i--~----~---~~~~~m-k~ga~lIn~srg~~vd~~a 137 (221)
++.-... +++ .++ + + +.+... ++++++|.++ .++|.-.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 8764321 111 111 1 1 123334 4788888877 5555444
No 400
>PRK08223 hypothetical protein; Validated
Probab=96.40 E-value=0.014 Score=50.30 Aligned_cols=93 Identities=16% Similarity=0.234 Sum_probs=59.3
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhcC----cee-
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKETG----AKF- 82 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~g----~~~- 82 (221)
..|..++|.|||+|.+|..+++.|...|. ++.++|...... + ...+.+ +..
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF 102 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 46899999999999999999999999997 477777542110 0 011111 111
Q ss_pred -----cCCHHhhcCCCCEEEEeCCCC-hhhhhcchHHHHhcCCCCCEEEEc
Q 027577 83 -----EEDLDTMLPKCDIVVVNTPLT-EKTRGMFDKDRIAKMKKGVLIVNN 127 (221)
Q Consensus 83 -----~~~l~ell~~aDvVv~~~p~~-~~t~~~i~~~~~~~mk~ga~lIn~ 127 (221)
.++.+++++++|+|+-++..- -+++..+++..... +.-+|..
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~---~iP~V~~ 150 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQR---GIPALTA 150 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHc---CCCEEEE
Confidence 135667888899888666421 25666676654432 4445554
No 401
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=96.40 E-value=0.016 Score=48.74 Aligned_cols=92 Identities=17% Similarity=0.089 Sum_probs=63.2
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcC-ceecCCHH-hh--cCCCCEEEEeCCCChhhhh
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETG-AKFEEDLD-TM--LPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g-~~~~~~l~-el--l~~aDvVv~~~p~~~~t~~ 108 (221)
-.|.++.|.|.|.+|..+++.++..|.+ |++.+++....+.+++.| ........ .. -...|+++.++....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~---- 171 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS---- 171 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----
Confidence 3588999999999999999999999999 988887655555555555 22111111 11 135898887765221
Q ss_pred cchHHHHhcCCCCCEEEEcCCC
Q 027577 109 MFDKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 109 ~i~~~~~~~mk~ga~lIn~srg 130 (221)
.....+..++++..+++++-.
T Consensus 172 -~~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 172 -ALETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred -HHHHHHHHhcCCcEEEEEecc
Confidence 234567788999999988643
No 402
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.37 E-value=0.02 Score=50.15 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=61.1
Q ss_pred CCCEEEEEccCHHHHHHHHHHcc-CC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcc
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF 110 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i 110 (221)
.|.+|.|+|.|.+|...++.++. +| .+|++.++++.+.+.++..+.... .+++.+ ..|+|+-++... .+...+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~--~~~~~~~~g~d~viD~~G~~-~~~~~~ 239 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL--IDDIPEDLAVDHAFECVGGR-GSQSAI 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee--hhhhhhccCCcEEEECCCCC-ccHHHH
Confidence 48999999999999999888875 54 679999987666666555444321 222222 379998887621 011112
Q ss_pred hHHHHhcCCCCCEEEEcCC
Q 027577 111 DKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 111 ~~~~~~~mk~ga~lIn~sr 129 (221)
.+.++.++++..++.++-
T Consensus 240 -~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 240 -NQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred -HHHHHhCcCCcEEEEEee
Confidence 346778899988887763
No 403
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.37 E-value=0.013 Score=56.26 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=51.6
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhcCceec--------C
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E 84 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~ 84 (221)
-.|++|+|||.|..|.+.|..|...|++|.++++.... .+.+...|+... .
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i 404 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI 404 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence 46999999999999999999999999999999875321 123344565421 1
Q ss_pred CHHhhcCCCCEEEEeCCC
Q 027577 85 DLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 85 ~l~ell~~aDvVv~~~p~ 102 (221)
+++++..+.|.|++++..
T Consensus 405 ~~~~~~~~~DavilAtGa 422 (654)
T PRK12769 405 SLESLLEDYDAVFVGVGT 422 (654)
T ss_pred CHHHHHhcCCEEEEeCCC
Confidence 445666789999998754
No 404
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.37 E-value=0.011 Score=49.52 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM 70 (221)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~ 70 (221)
.++++++.|.|. |.||+.+|+.|...|++|++.+++..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999995 89999999999999999999998753
No 405
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=96.36 E-value=0.014 Score=51.04 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=59.7
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-C----CHHh---hcC--CCC-EEEEeCCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E----DLDT---MLP--KCD-IVVVNTPL 102 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-~----~l~e---ll~--~aD-vVv~~~p~ 102 (221)
.|++|.|.|.|.+|...++.++.+|.+ |++.+++....+.+++.|+..+ . +.++ +.. ..| +|+-|+..
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~ 239 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGV 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCC
Confidence 589999999999999999999999997 6788876655556666665321 1 1111 221 346 66666642
Q ss_pred ChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
+. .+ .+.++.++++..++.++
T Consensus 240 -~~---~~-~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 240 -PQ---TV-ELAIEIAGPRAQLALVG 260 (347)
T ss_pred -HH---HH-HHHHHHhhcCCEEEEEc
Confidence 11 12 34567788888888875
No 406
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=96.35 E-value=0.048 Score=47.18 Aligned_cols=94 Identities=17% Similarity=0.274 Sum_probs=66.4
Q ss_pred CCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHH----HhcC--ceecCCHHhhcCCCCEEEEeCC
Q 027577 34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLE----KETG--AKFEEDLDTMLPKCDIVVVNTP 101 (221)
Q Consensus 34 l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~----~~~g--~~~~~~l~ell~~aDvVv~~~p 101 (221)
|+|+|++.+|= .+|+.++......+|+++.+..|....+ +.+ ++.| +...+++++.++.+|+|..-+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 89999999995 5799999999999999999888764222 112 2223 5567899999999999987654
Q ss_pred CC--hhhh-----------hcchHHHHhcCCCCCEEEEc
Q 027577 102 LT--EKTR-----------GMFDKDRIAKMKKGVLIVNN 127 (221)
Q Consensus 102 ~~--~~t~-----------~~i~~~~~~~mk~ga~lIn~ 127 (221)
.+ ++.+ .-++.+.++.-+++++|+.|
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC 269 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC 269 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence 21 1111 23456666666667777666
No 407
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.35 E-value=0.05 Score=49.80 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=61.8
Q ss_pred CEEEEEcc-CHHHHHHHHHHccC-------CC--eEEEEcCCCCChh-----HHHhc-----CceecCCHHhhcCCCCEE
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPF-------NC--NLLYHDRVKMDPQ-----LEKET-----GAKFEEDLDTMLPKCDIV 96 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~-------G~--~V~~~d~~~~~~~-----~~~~~-----g~~~~~~l~ell~~aDvV 96 (221)
-+|+|||. |++|..+|-.|... |. +++.+|++....+ ..+.. .+....+..+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 48999999 99999999988655 44 6888898654322 11111 222223445778999999
Q ss_pred EEeCCC--Chh-h--------hhcchH--HHHhc-CCCCCEEEEcCCCCccCHHHHH
Q 027577 97 VVNTPL--TEK-T--------RGMFDK--DRIAK-MKKGVLIVNNARGAIMDTQAVV 139 (221)
Q Consensus 97 v~~~p~--~~~-t--------~~~i~~--~~~~~-mk~ga~lIn~srg~~vd~~al~ 139 (221)
+++... .+. + ..++.. +.+.. -.+++++|.++ .++|.-..+
T Consensus 181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v 235 (444)
T PLN00112 181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALI 235 (444)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHH
Confidence 998643 111 1 111111 12333 46788999887 556655543
No 408
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.34 E-value=0.033 Score=42.65 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=28.5
Q ss_pred EEEEEccCHHHHHHHHHHccCCC-eEEEEcCCC
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK 69 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~ 69 (221)
+|.|||+|.+|..+++.|...|. ++.++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 589998653
No 409
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.34 E-value=0.17 Score=49.31 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=89.9
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCC---eEEEEcCCCC----C---hhHHH-hc-CceecCCHHhhcCCCCEEEE
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKM----D---PQLEK-ET-GAKFEEDLDTMLPKCDIVVV 98 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~---~V~~~d~~~~----~---~~~~~-~~-g~~~~~~l~ell~~aDvVv~ 98 (221)
+..+...||.|.|.|.-|-.+++.|...|. +++.+|+... . ....+ .+ .-....+++|+++.+|+++=
T Consensus 180 ~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG 259 (752)
T PRK07232 180 GKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLG 259 (752)
T ss_pred CCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEE
Confidence 467889999999999999999999998898 6888887631 1 01111 11 00223589999999998764
Q ss_pred eCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCC
Q 027577 99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178 (221)
Q Consensus 99 ~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~ 178 (221)
+ . ..+.+.++.++.|.+..+|.=.|.-..--..+.......|.|.+-+- ...| -+..|+++-|-+
T Consensus 260 ~-s----~~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atGr---s~~p-------nQ~NN~~~FPgi 324 (752)
T PRK07232 260 L-S----AAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAVRPDAIIATGR---SDYP-------NQVNNVLCFPYI 324 (752)
T ss_pred c-C----CCCCCCHHHHHHhccCCEEEecCCCCccCCHHHHHHhcCCEEEEECC---cCCC-------Ccccceeecchh
Confidence 3 2 14789999999999999999998877522222222222344443321 1112 244688888887
Q ss_pred CcC
Q 027577 179 SGT 181 (221)
Q Consensus 179 a~~ 181 (221)
+-.
T Consensus 325 ~~g 327 (752)
T PRK07232 325 FRG 327 (752)
T ss_pred hHH
Confidence 543
No 410
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.33 E-value=0.014 Score=53.50 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=65.7
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc-Cceec-CCHHhhcCCCCEEEEeCCC---Chhh--
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GAKFE-EDLDTMLPKCDIVVVNTPL---TEKT-- 106 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-g~~~~-~~l~ell~~aDvVv~~~p~---~~~t-- 106 (221)
-.|++|+|+|+|.-|.+.++.|+. |++|+++|..........+. ..... ....+.+.++|+|+..-.- +|..
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~ 82 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKI 82 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHH
Confidence 358899999999999999999995 99999999543322211111 11111 1123456789988776422 2211
Q ss_pred -----hhcchH-HHH-hcCCC-CCEEEEcCCCCccCHHHHHHHHHhC
Q 027577 107 -----RGMFDK-DRI-AKMKK-GVLIVNNARGAIMDTQAVVDACSSG 145 (221)
Q Consensus 107 -----~~~i~~-~~~-~~mk~-ga~lIn~srg~~vd~~al~~al~~g 145 (221)
..++.+ +.+ ..+++ ..+=|--+.|+--...-+...|+..
T Consensus 83 a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 129 (454)
T PRK01368 83 AKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN 129 (454)
T ss_pred HHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 112322 232 23332 2344555678877777777777763
No 411
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=96.33 E-value=0.0074 Score=53.31 Aligned_cols=62 Identities=21% Similarity=0.400 Sum_probs=44.0
Q ss_pred EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhcCceecCC---HHhhcCCCCEEEEe
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFEED---LDTMLPKCDIVVVN 99 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~g~~~~~~---l~ell~~aDvVv~~ 99 (221)
||||||.|..|+.+++.++.+|++|+++|.++..+.. +...-+..+.+ +.++++.||+|...
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5999999999999999999999999999986543321 11100111234 56677889988654
No 412
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=96.31 E-value=0.015 Score=51.51 Aligned_cols=47 Identities=30% Similarity=0.381 Sum_probs=39.8
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCce
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAK 81 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~ 81 (221)
.|.+|.|+|.|.+|...++.++.+|. +|++.+++....+.++++|+.
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~ 232 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT 232 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC
Confidence 58899999999999999999999999 799998876666666666653
No 413
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.31 E-value=0.01 Score=48.93 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=34.0
Q ss_pred CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM 70 (221)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~ 70 (221)
++.++++.|+|. |.+|+.+++.|...|++|++.+|+..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 477899999994 89999999999999999999998753
No 414
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.30 E-value=0.023 Score=49.50 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=50.6
Q ss_pred CEEEEEc-cCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577 37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (221)
Q Consensus 37 ~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~ 114 (221)
-+|+|+| .|-.|..+.+.|.... +++.....+.. ... .+.+++++++|++++|+|.. ....+. ...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~~-~~~~~~~~~~D~vFlalp~~-~s~~~~-~~~ 69 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KDA-AERAKLLNAADVAILCLPDD-AAREAV-SLV 69 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cCc-CCHhHhhcCCCEEEECCCHH-HHHHHH-HHH
Confidence 3799999 5999999999998763 45554432221 111 24567778999999999933 222221 111
Q ss_pred HhcCCCCCEEEEcC
Q 027577 115 IAKMKKGVLIVNNA 128 (221)
Q Consensus 115 ~~~mk~ga~lIn~s 128 (221)
.+.|+.+||.|
T Consensus 70 ---~~~g~~VIDlS 80 (310)
T TIGR01851 70 ---DNPNTCIIDAS 80 (310)
T ss_pred ---HhCCCEEEECC
Confidence 25688999988
No 415
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.30 E-value=0.016 Score=51.95 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=33.4
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~ 68 (221)
..|.+++|.|+|+|.+|..+++.|...|. ++.++|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 36899999999999999999999999998 58888875
No 416
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.29 E-value=0.0079 Score=53.82 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=57.2
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhcC----ceec
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKETG----AKFE 83 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~g----~~~~ 83 (221)
..|.+++|.|||+|.+|..+++.|...|. ++.++|...... + ...+.+ +...
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 46899999999999999999999999997 688888652100 0 011111 1111
Q ss_pred ------CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHh
Q 027577 84 ------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116 (221)
Q Consensus 84 ------~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~ 116 (221)
.+.+++++++|+|+.|+- +.+++.++++....
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~ 154 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI 154 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 245578889999877764 66777777765443
No 417
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.29 E-value=0.024 Score=56.76 Aligned_cols=84 Identities=23% Similarity=0.291 Sum_probs=61.1
Q ss_pred HHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhH
Q 027577 16 QVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQL 74 (221)
Q Consensus 16 ~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~ 74 (221)
+..+| |-.. .+...-.|++|+|||-|..|-+.|..|...|+.|.+|.|+.+. .+.
T Consensus 1769 af~eg-wm~p---~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~l 1844 (2142)
T KOG0399|consen 1769 AFEEG-WMKP---CPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDL 1844 (2142)
T ss_pred HHHhc-CCcc---CCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHH
Confidence 34444 7643 2233557999999999999999999999999999999986532 112
Q ss_pred HHhcCceec--------CCHHhhcCCCCEEEEeCCCC
Q 027577 75 EKETGAKFE--------EDLDTMLPKCDIVVVNTPLT 103 (221)
Q Consensus 75 ~~~~g~~~~--------~~l~ell~~aDvVv~~~p~~ 103 (221)
....|+..+ .+++++.++-|.|++++..|
T Consensus 1845 l~~egi~f~tn~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1845 LEQEGIRFVTNTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred HHhhCceEEeeccccccccHHHHhhccCeEEEEeCCC
Confidence 233454322 47899999999999997544
No 418
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.28 E-value=0.016 Score=51.18 Aligned_cols=107 Identities=17% Similarity=0.274 Sum_probs=63.0
Q ss_pred CEEEEEccCHHHHHHHHHHcc--------CC--CeEEEE-cCCC-------CChhHH----HhcC----ce-----ecCC
Q 027577 37 KTVGTVGCGRIGKLLLQRLKP--------FN--CNLLYH-DRVK-------MDPQLE----KETG----AK-----FEED 85 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~--------~G--~~V~~~-d~~~-------~~~~~~----~~~g----~~-----~~~~ 85 (221)
.+|+|+|+|++|+.+++.+.. +| .+|.++ |++. ...+.+ ++.+ +. ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 589999999999999998865 56 454433 4331 111111 0111 00 0115
Q ss_pred HHhhc--CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 027577 86 LDTML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA 148 (221)
Q Consensus 86 l~ell--~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~v-d~~al~~al~~g~i~ 148 (221)
+++++ .++|+|+-+++. +. ...-....++.|..+|-...|.+- ..++|.+..++.+..
T Consensus 83 ~~ell~~~~~DVvVd~t~~-~~----a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~ 143 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTND-KN----AHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLP 143 (336)
T ss_pred HHHHHhcCCCCEEEECCCc-HH----HHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCe
Confidence 67777 479999988752 21 222233456788888877776443 556676666555444
No 419
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.28 E-value=0.0071 Score=48.78 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=47.5
Q ss_pred CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----cCceecCCHHhhcCCCCEEEEeCCC
Q 027577 37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~ell~~aDvVv~~~p~ 102 (221)
|||+||| -|.+|+.+++-+...|++|.++-|++.+....+. ..+.-.+++.+.+..-|+||.+...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 6899999 5999999999999999999999887643322111 1121123445678889999987643
No 420
>PRK07877 hypothetical protein; Provisional
Probab=96.27 E-value=0.013 Score=56.73 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=58.3
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCC------------------hhHHH----hc----Cceec
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMD------------------PQLEK----ET----GAKFE 83 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~------------------~~~~~----~~----g~~~~ 83 (221)
..|++++|+|+|+| +|..+|..|...|. ++.++|..... .+.++ +. .+..+
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 36899999999999 99999999998884 67777654210 00011 11 11111
Q ss_pred ------CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhc
Q 027577 84 ------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117 (221)
Q Consensus 84 ------~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~ 117 (221)
++++++++++|+|+-|+- +-+++.++++...+.
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 357888999999988885 678888888766554
No 421
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.25 E-value=0.028 Score=51.08 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=67.4
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhcCceec--CCHHhhcCCCCEEEEeCCCChhhhh
Q 027577 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRG 108 (221)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~~~t~~ 108 (221)
++.+++|.|+|+|..|.+.++.|+..|++|.++|...... +... .|+... ....+.++..|+||.. |.-+....
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~ 80 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVAS-PGIALAHP 80 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCH
Confidence 4668999999999999999999999999999999654322 1222 255432 1223456778976654 32221111
Q ss_pred -----------cchH-HHHhcC-CCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 109 -----------MFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 109 -----------~i~~-~~~~~m-k~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
++.+ +.+..+ +...+-|--+.|+--...-|...|+.
T Consensus 81 ~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 81 SLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 1221 333332 32344466667887777767777765
No 422
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.23 E-value=0.028 Score=53.74 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=52.1
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC---------------------ChhHHHhcCceec--------C
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM---------------------DPQLEKETGAKFE--------E 84 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~---------------------~~~~~~~~g~~~~--------~ 84 (221)
..|++|.|||.|..|...|..|+..|++|.+|++... ..+.+...|+... .
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence 4699999999999999999999999999999987642 1123344555321 2
Q ss_pred CHHhhcCCCCEEEEeCCC
Q 027577 85 DLDTMLPKCDIVVVNTPL 102 (221)
Q Consensus 85 ~l~ell~~aDvVv~~~p~ 102 (221)
+++++....|.|++++..
T Consensus 388 ~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 388 TFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred CHHHHHhcCCEEEEeCCC
Confidence 455666789999998864
No 423
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=96.22 E-value=0.025 Score=49.71 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=24.3
Q ss_pred EEEEEccCHHHHHHHHHHccC----CCeEEEEcC
Q 027577 38 TVGTVGCGRIGKLLLQRLKPF----NCNLLYHDR 67 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~----G~~V~~~d~ 67 (221)
+|||+|+|+||+.+.+.+... +++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 589999999999999998754 377776653
No 424
>PRK08328 hypothetical protein; Provisional
Probab=96.21 E-value=0.017 Score=48.32 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=32.7
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~ 68 (221)
..|.+++|.|+|+|.+|..+++.|...|. ++.++|..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999999997 47788754
No 425
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.20 E-value=0.016 Score=50.53 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=43.0
Q ss_pred EEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHhc------CceecCCHHhhcCCCCEEEEeCC
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKET------GAKFEEDLDTMLPKCDIVVVNTP 101 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~~------g~~~~~~l~ell~~aDvVv~~~p 101 (221)
||+|||.|.+|..+|..|...+. ++..+|......+ ..... .+.....-.+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 68999999999999998876665 6999998643221 11110 11111122467899999999864
No 426
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.20 E-value=0.0069 Score=53.88 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=32.8
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~ 68 (221)
..|.+++|.|||+|.+|..+++.|...|. ++.++|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999998 47778764
No 427
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=96.19 E-value=0.021 Score=50.49 Aligned_cols=47 Identities=26% Similarity=0.230 Sum_probs=38.9
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCc
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~ 80 (221)
..|.+|.|+|.|.+|...++.++.+|. +|++.+++....+.++++|+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga 230 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGA 230 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC
Confidence 358999999999999999999999999 69888886655556666665
No 428
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=96.19 E-value=0.023 Score=48.95 Aligned_cols=90 Identities=22% Similarity=0.297 Sum_probs=61.6
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHh-hcCCCCEEEEeCCCChhhhhcchH
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-MLPKCDIVVVNTPLTEKTRGMFDK 112 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e-ll~~aDvVv~~~p~~~~t~~~i~~ 112 (221)
-.|.++.|.|.|.+|..+++.++..|.+|++.+++....+.++..|+....+.++ .-+..|+++.+.+.. ....
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~-----~~~~ 240 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVG-----ALVP 240 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcH-----HHHH
Confidence 3578999999999999999999999999988887665555556666643212221 113468777765421 1234
Q ss_pred HHHhcCCCCCEEEEcC
Q 027577 113 DRIAKMKKGVLIVNNA 128 (221)
Q Consensus 113 ~~~~~mk~ga~lIn~s 128 (221)
+.+..++++..++..+
T Consensus 241 ~~~~~l~~~G~~v~~g 256 (329)
T cd08298 241 AALRAVKKGGRVVLAG 256 (329)
T ss_pred HHHHHhhcCCEEEEEc
Confidence 5677788888887654
No 429
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=96.19 E-value=0.032 Score=48.82 Aligned_cols=90 Identities=21% Similarity=0.248 Sum_probs=62.6
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--CCCEEEEeCCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL 102 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDvVv~~~p~ 102 (221)
.|.+|.|.|.|.+|...++.++..|+ +|++.+++....+.+.+.|+..+ .++ .++.. ..|+|+-+...
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~ 251 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV 251 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence 58899999999999999999999999 78888876555555555565321 111 22222 38999888752
Q ss_pred ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 103 TEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
.. .....+..++++..++.++.
T Consensus 252 ~~-----~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 252 QA-----TLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred HH-----HHHHHHHhccCCCEEEEEcc
Confidence 11 12345677888888888764
No 430
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=96.17 E-value=0.026 Score=49.89 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=39.5
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCc
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~ 80 (221)
.|.+|.|+|.|.+|...++.++.+|+ +|++.+++....+.++++|+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga 233 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV 233 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 58999999999999999999999999 79999887666666666665
No 431
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=96.16 E-value=0.031 Score=48.40 Aligned_cols=92 Identities=22% Similarity=0.245 Sum_probs=63.3
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceecCC--------HHhhcC--CCCEEEEeCCCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEED--------LDTMLP--KCDIVVVNTPLT 103 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~--------l~ell~--~aDvVv~~~p~~ 103 (221)
.|++|.|.|.|.+|..+++.++..| .+|++.++++...+.+++.|+..+.+ +.++.. ..|+++-+.+..
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~ 246 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSD 246 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCH
Confidence 5889999999999999999999998 89988887665555556666532211 222332 478888776521
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
+ ...+.+..++++..++.++..+
T Consensus 247 ~-----~~~~~~~~l~~~g~~i~~g~~~ 269 (340)
T cd05284 247 E-----TLALAAKLLAKGGRYVIVGYGG 269 (340)
T ss_pred H-----HHHHHHHHhhcCCEEEEEcCCC
Confidence 1 2344567778888888876543
No 432
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=96.15 E-value=0.026 Score=48.47 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=60.0
Q ss_pred CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHH----hhc-----CCCCEEEEeCCCCh
Q 027577 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD----TML-----PKCDIVVVNTPLTE 104 (221)
Q Consensus 35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~----ell-----~~aDvVv~~~p~~~ 104 (221)
.+.+|.|+|. |.+|..+++.++..|.+|++.++++...+.+++.|+..+.+.+ +.+ ...|+|+-++.. +
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~-~ 224 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGG-K 224 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcH-H
Confidence 3689999998 9999999999999999999888776555666666653221111 111 236777666541 1
Q ss_pred hhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 105 KTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
...+.+..++++..+|.++.
T Consensus 225 -----~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 225 -----TLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred -----HHHHHHHHhhcCCEEEEEee
Confidence 12345677788888887764
No 433
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.15 E-value=0.014 Score=55.37 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=31.8
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDR 67 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~ 67 (221)
..|.+.+|.|||+|.+|..+|+.|.+.|.. ++++|.
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 468899999999999999999999999984 777764
No 434
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=96.14 E-value=0.021 Score=49.66 Aligned_cols=87 Identities=21% Similarity=0.192 Sum_probs=59.0
Q ss_pred CCEEEEEcc-CHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHh-cCceec-----CCHHhhc-----CCCCEEEEeCCC
Q 027577 36 GKTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFE-----EDLDTML-----PKCDIVVVNTPL 102 (221)
Q Consensus 36 g~~vgIIG~-G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~-----~~l~ell-----~~aDvVv~~~p~ 102 (221)
|.+|.|.|. |.+|...++.++.+|+ +|++.+++....+.+.+ +|+..+ .++.+.+ ...|+|+-++..
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 489999997 9999999999999999 79988876544444443 565321 1222222 247888877651
Q ss_pred ChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
+ .+ .+.+..++++..+|.++
T Consensus 235 -~----~~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 235 -E----IS-DTVISQMNENSHIILCG 254 (345)
T ss_pred -H----HH-HHHHHHhccCCEEEEEe
Confidence 1 12 45677788888888775
No 435
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.14 E-value=0.026 Score=49.33 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=50.0
Q ss_pred CEEEEEc-cCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577 37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (221)
Q Consensus 37 ~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~ 114 (221)
.+|+||| .|..|+.+.+.|.... +++.....+... . . .+.++.++++|++|+|+|.... .. +-.+.
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~------~---~~~~~~~~~~DvvFlalp~~~s-~~-~~~~~ 70 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-D------A---AARRELLNAADVAILCLPDDAA-RE-AVALI 70 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-c------c---cCchhhhcCCCEEEECCCHHHH-HH-HHHHH
Confidence 5899999 6999999999998765 355444332211 1 1 2334566789999999993221 11 21222
Q ss_pred HhcCCCCCEEEEcC
Q 027577 115 IAKMKKGVLIVNNA 128 (221)
Q Consensus 115 ~~~mk~ga~lIn~s 128 (221)
.+.|+.+||.|
T Consensus 71 ---~~~g~~VIDlS 81 (313)
T PRK11863 71 ---DNPATRVIDAS 81 (313)
T ss_pred ---HhCCCEEEECC
Confidence 25688999988
No 436
>PRK12862 malic enzyme; Reviewed
Probab=96.13 E-value=0.1 Score=50.92 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=89.9
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCC---eEEEEcCCC-----CC-------hhHHHhcCceecCCHHhhcCCCCE
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVK-----MD-------PQLEKETGAKFEEDLDTMLPKCDI 95 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~---~V~~~d~~~-----~~-------~~~~~~~g~~~~~~l~ell~~aDv 95 (221)
+..+...||.|.|.|.-|..+|+.|...|. +++.+|+.. .. ...++.. ...+|+|+++.+|+
T Consensus 188 ~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~---~~~~l~e~~~~~~v 264 (763)
T PRK12862 188 GKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT---DARTLAEVIEGADV 264 (763)
T ss_pred CCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc---ccCCHHHHHcCCCE
Confidence 467889999999999999999999998898 688899653 11 1122221 23589999999998
Q ss_pred EEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEEC
Q 027577 96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT 175 (221)
Q Consensus 96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~t 175 (221)
++=+.. .+.+.++.++.|.+..+|.-.|.-..--..+.......|.|.+-+ ..+.| -+..|+++-
T Consensus 265 ~iG~s~-----~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atG---------rs~~p-~Q~NN~~~F 329 (763)
T PRK12862 265 FLGLSA-----AGVLKPEMVKKMAPRPLIFALANPTPEILPEEARAVRPDAIIATG---------RSDYP-NQVNNVLCF 329 (763)
T ss_pred EEEcCC-----CCCCCHHHHHHhccCCEEEeCCCCcccCCHHHHHHhcCCEEEEEC---------CcCCC-Ccccceeec
Confidence 865432 478999999999999999999887652112222222224444332 11111 235689999
Q ss_pred CCCCcC
Q 027577 176 PHVSGT 181 (221)
Q Consensus 176 PH~a~~ 181 (221)
|=++-.
T Consensus 330 Pgi~~g 335 (763)
T PRK12862 330 PYIFRG 335 (763)
T ss_pred cchhhh
Confidence 987543
No 437
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=96.12 E-value=0.023 Score=49.89 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=60.8
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec---C--C-------HHhhc--CCCCEEEEe
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E--D-------LDTML--PKCDIVVVN 99 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---~--~-------l~ell--~~aDvVv~~ 99 (221)
.|++|.|.|.|.+|..+++.++..|. +|++.+++....+.++++|+..+ . + +.++. +..|+++-+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~ 256 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA 256 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence 68899999999999999999999999 89888876544555555665321 1 1 11122 246888777
Q ss_pred CCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 100 ~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
..... .....+..++++..++.++.
T Consensus 257 ~g~~~-----~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 257 SGHPA-----AVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CCChH-----HHHHHHHHhccCCEEEEEcC
Confidence 64211 22345677788888887764
No 438
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.12 E-value=0.024 Score=48.80 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=46.2
Q ss_pred CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh---c-----Cce-------ecCCHHhhcCCCCEEEEe
Q 027577 36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---T-----GAK-------FEEDLDTMLPKCDIVVVN 99 (221)
Q Consensus 36 g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~---~-----g~~-------~~~~l~ell~~aDvVv~~ 99 (221)
|++|.|.| .|.||+.+++.|...|++|.+.+++......... . .+. ....++++++.+|+|+-+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 83 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHT 83 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEe
Confidence 68999999 6999999999999999999988875432211110 0 111 113466778889988776
Q ss_pred CC
Q 027577 100 TP 101 (221)
Q Consensus 100 ~p 101 (221)
..
T Consensus 84 A~ 85 (322)
T PLN02662 84 AS 85 (322)
T ss_pred CC
Confidence 64
No 439
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.11 E-value=0.017 Score=47.34 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM 70 (221)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~ 70 (221)
++++++|.|.|. |.||..+++.+...|++|++.+|+..
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999995 88999999999999999999998653
No 440
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=96.09 E-value=0.022 Score=49.58 Aligned_cols=88 Identities=25% Similarity=0.197 Sum_probs=59.3
Q ss_pred CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-cCceec------CCHHhhc-----CCCCEEEEeCC
Q 027577 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE------EDLDTML-----PKCDIVVVNTP 101 (221)
Q Consensus 35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~------~~l~ell-----~~aDvVv~~~p 101 (221)
.|.+|.|.|. |.+|..+++.++.+|.+|++..++....+.+++ +|+..+ .++.+.+ ...|+|+-++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g 230 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG 230 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence 5899999997 999999999999999999888876555555555 665311 1222211 24677776654
Q ss_pred CChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 102 LTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
. . ...+.+..++++..++..+
T Consensus 231 ~--~----~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 231 G--K----MLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred H--H----HHHHHHHHhccCcEEEEec
Confidence 1 1 1234567777877777765
No 441
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=96.09 E-value=0.02 Score=50.47 Aligned_cols=88 Identities=24% Similarity=0.228 Sum_probs=59.9
Q ss_pred CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hcCceec------CCHHhhc-----CCCCEEEEeCC
Q 027577 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE------EDLDTML-----PKCDIVVVNTP 101 (221)
Q Consensus 35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~------~~l~ell-----~~aDvVv~~~p 101 (221)
.|.+|.|.|. |.+|...++.++.+|++|++.+++....+.++ ++|+..+ .++.+.+ ...|+++-++.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG 237 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG 237 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence 5899999998 99999999999999999998887654444444 4665321 1232222 13688877664
Q ss_pred CChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 102 LTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
.+ .....+..++++..++.++
T Consensus 238 -~~-----~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 238 -GD-----MLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred -HH-----HHHHHHHHhccCCEEEEEC
Confidence 11 2244667788888887765
No 442
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=96.07 E-value=0.032 Score=49.21 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=61.9
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhcCceec---CC---HHhhcCCCCEEEEeCCCChhh
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKT 106 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~---~~---l~ell~~aDvVv~~~p~~~~t 106 (221)
..|.++.|.|.|.+|...++.++..|.+|++.+++..... ..+.+|+... .+ +.+.....|+++-+++...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~-- 256 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFH-- 256 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchH--
Confidence 3688999999999999999999999999888876543332 2234565321 11 2223345799988876221
Q ss_pred hhcchHHHHhcCCCCCEEEEcCC
Q 027577 107 RGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 107 ~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
.....+..++++..++.++.
T Consensus 257 ---~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 257 ---PLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---HHHHHHHHhccCCEEEEECC
Confidence 22345677889999998874
No 443
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.05 E-value=0.068 Score=48.67 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=66.5
Q ss_pred CCC-CEEEEEccCHHHHHHHHHHccC--CCeEEEEcCCCCCh--hHHHhcCceec-C-CHHhhcCCCCEEEEeCCC---C
Q 027577 34 LEG-KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDP--QLEKETGAKFE-E-DLDTMLPKCDIVVVNTPL---T 103 (221)
Q Consensus 34 l~g-~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~--~~~~~~g~~~~-~-~l~ell~~aDvVv~~~p~---~ 103 (221)
+.+ ++|.|||+|..|.+.++.|... |++|.++|...... +..+. |+... . .-.+.+.++|+|+....- +
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~ 82 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALAT 82 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCC
Confidence 556 7899999999999999999776 58899999654222 12222 66542 1 123445789988775422 2
Q ss_pred hhhh-------hcch-HHHH-hcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 104 EKTR-------GMFD-KDRI-AKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 104 ~~t~-------~~i~-~~~~-~~mk~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
|... .++. .+.+ ..++...+-|--+.|+.-...-+...|+.
T Consensus 83 p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 83 PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2211 1222 2333 22343345566667887777767777765
No 444
>PRK07411 hypothetical protein; Validated
Probab=96.03 E-value=0.015 Score=52.44 Aligned_cols=87 Identities=23% Similarity=0.200 Sum_probs=57.6
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhcC--c--ee-
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKETG--A--KF- 82 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~g--~--~~- 82 (221)
..|...+|.|||+|.+|..+|+.|...|. ++.++|...... + ...+.+ + ..
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 46899999999999999999999999998 477777642110 0 001111 1 11
Q ss_pred ---c--CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCC
Q 027577 83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119 (221)
Q Consensus 83 ---~--~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk 119 (221)
. .+..+++.++|+|+.|+- +.+++.++++.....-+
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~ 154 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNK 154 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 1 234567889998887763 66677777766554433
No 445
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.03 E-value=0.035 Score=48.49 Aligned_cols=49 Identities=29% Similarity=0.356 Sum_probs=43.2
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE 83 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~ 83 (221)
.|.++.|+|.|.||-.....++++|. +|++.|..+...+.++++|++.+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~ 218 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVT 218 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEE
Confidence 48999999999999999999999998 59999988878888888887654
No 446
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.02 E-value=0.06 Score=48.67 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=64.0
Q ss_pred CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc--CCCCEEEEeC--C-CChhh---hh
Q 027577 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNT--P-LTEKT---RG 108 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell--~~aDvVv~~~--p-~~~~t---~~ 108 (221)
++|.|+|+|..|.++|+.|+ .|.+|.++|..+.... ..+.|+... + ++.+ +++|+|+..- | .+|.. +.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 47899999999999999999 9999999995432221 233466543 2 2234 4689887653 2 22221 11
Q ss_pred cchH-HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577 109 MFDK-DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (221)
Q Consensus 109 ~i~~-~~~~~mk~ga~lIn~srg~~vd~~al~~al~~ 144 (221)
++.+ +.+..+.+..+-|--+.|+.-...-+...|+.
T Consensus 77 i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 77 LISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred HhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 2222 22222223355566677887777777777775
No 447
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.01 E-value=0.016 Score=51.23 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=49.2
Q ss_pred EEEEEc-cCHHHHHHHHHHccCCCe---EEEEcCCCCChhHHHhcCce-ecCCH-HhhcCCCCEEEEeCCCChhhhhcch
Q 027577 38 TVGTVG-CGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKETGAK-FEEDL-DTMLPKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 38 ~vgIIG-~G~iG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~g~~-~~~~l-~ell~~aDvVv~~~p~~~~t~~~i~ 111 (221)
+|+||| .|.+|+.+++.|...++. +.++.+.....+.....+.. .+.++ .+.++++|+|++|+|... +.. +.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~-s~~-~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSV-SKE-FA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHH-HHH-HH
Confidence 589999 799999999999886664 33333322111111111211 11111 234588999999999332 221 11
Q ss_pred HHHHhcCCCCCEEEEcC
Q 027577 112 KDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~s 128 (221)
.. .++.|+.+||.+
T Consensus 79 ~~---~~~~G~~VID~s 92 (339)
T TIGR01296 79 PK---AAKCGAIVIDNT 92 (339)
T ss_pred HH---HHHCCCEEEECC
Confidence 22 235688899887
No 448
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=96.00 E-value=0.032 Score=48.58 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=61.6
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec---C---CHHh----hcC-CCCEEEEeCCCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E---DLDT----MLP-KCDIVVVNTPLT 103 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~---~l~e----ll~-~aDvVv~~~p~~ 103 (221)
.|++|.|.|.|.+|..+++.++..|.+|++.+++....+.+.+.|+..+ . ++.+ +.. ..|+++-++..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~- 243 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGI- 243 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCC-
Confidence 5789999999999999999999999999988876555555555665311 1 1111 111 47888877642
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
.. .....+..|+++..+++++.
T Consensus 244 ~~----~~~~~~~~l~~~g~~i~~g~ 265 (345)
T cd08260 244 PE----TCRNSVASLRKRGRHVQVGL 265 (345)
T ss_pred HH----HHHHHHHHhhcCCEEEEeCC
Confidence 11 22345677888888888764
No 449
>PRK15076 alpha-galactosidase; Provisional
Probab=95.99 E-value=0.019 Score=52.42 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=44.1
Q ss_pred CEEEEEccCHHHHHHHH--HH---ccC-CCeEEEEcCCCCChhHH--------HhcC----ceecCCHHhhcCCCCEEEE
Q 027577 37 KTVGTVGCGRIGKLLLQ--RL---KPF-NCNLLYHDRVKMDPQLE--------KETG----AKFEEDLDTMLPKCDIVVV 98 (221)
Q Consensus 37 ~~vgIIG~G~iG~~iA~--~l---~~~-G~~V~~~d~~~~~~~~~--------~~~g----~~~~~~l~ell~~aDvVv~ 98 (221)
+||+|||.|++|...+- .+ .++ +.+|..+|..+...+.. ...+ +....++.+.++.||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 58999999999955433 22 223 45899999875333211 1112 3345677899999999999
Q ss_pred eCCC
Q 027577 99 NTPL 102 (221)
Q Consensus 99 ~~p~ 102 (221)
+...
T Consensus 82 ti~v 85 (431)
T PRK15076 82 AIQV 85 (431)
T ss_pred eeee
Confidence 8754
No 450
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=95.99 E-value=0.011 Score=51.28 Aligned_cols=96 Identities=22% Similarity=0.239 Sum_probs=68.4
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce--------------ec----------CCHH
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FE----------EDLD 87 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--------------~~----------~~l~ 87 (221)
-.....++-++|+|-+|-..+......|+-|..+|..+...+..+..|.+ .. .-+.
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a 239 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA 239 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence 35677888999999999999999999999999988654332222222211 00 1134
Q ss_pred hhcCCCCEEEEe--CCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 88 TMLPKCDIVVVN--TPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 88 ell~~aDvVv~~--~p~~~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
+.+++.|+||.+ .|.-| .-.++.++..+.||||+++||.+
T Consensus 240 ~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 240 EQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEeh
Confidence 566889999875 35333 34578899999999999999986
No 451
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.98 E-value=0.014 Score=54.93 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=48.1
Q ss_pred CCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh---------cC------cee----c---CCHHhhc
Q 027577 34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---------TG------AKF----E---EDLDTML 90 (221)
Q Consensus 34 l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~---------~g------~~~----~---~~l~ell 90 (221)
-.|++|.|.|. |.||+.+++.|...|++|.+++|+....+.... .| +.. + +++++.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 46889999995 999999999999999999999886543321110 01 111 1 2344567
Q ss_pred CCCCEEEEeCCC
Q 027577 91 PKCDIVVVNTPL 102 (221)
Q Consensus 91 ~~aDvVv~~~p~ 102 (221)
..+|+||.+...
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 889999988653
No 452
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=95.98 E-value=0.015 Score=48.90 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=55.2
Q ss_pred CeEEEEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHH
Q 027577 60 CNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV 138 (221)
Q Consensus 60 ~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al 138 (221)
.+|.+++|+....+. ..++|+....+..++++++|+|++|++ |....-+-.+.-..++++.+||.++-| +..+.|
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~~~~~~~~~ivS~~ag--i~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELKSEKGKDKLLISIAAG--VTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHhhhccCCCEEEEecCC--CCHHHH
Confidence 468999997644333 344577767788899999999999999 433222223333345667899999887 566777
Q ss_pred HHHHHh
Q 027577 139 VDACSS 144 (221)
Q Consensus 139 ~~al~~ 144 (221)
.+.+..
T Consensus 86 ~~~~~~ 91 (245)
T TIGR00112 86 SQLLGG 91 (245)
T ss_pred HHHcCC
Confidence 776653
No 453
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.98 E-value=0.023 Score=46.29 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=33.1
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCC
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV 68 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~ 68 (221)
..|++++|.|||+|.+|..+++.|...|.. +.++|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 468899999999999999999999999985 8888865
No 454
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=95.97 E-value=0.044 Score=46.62 Aligned_cols=91 Identities=23% Similarity=0.188 Sum_probs=59.5
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CCCCEEEEeCC
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTP 101 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDvVv~~~p 101 (221)
-.|.+|.|.|.|.+|..+++.++..|++ |++..+.....+.....|+..+ .++ .++. ...|+++-+..
T Consensus 128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g 207 (312)
T cd08269 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVG 207 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence 3588999999999999999999999999 8888765544444455554211 112 1222 23788877654
Q ss_pred CChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
.. ......+..|+++..+++++.
T Consensus 208 ~~-----~~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 208 HQ-----WPLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred CH-----HHHHHHHHHhccCCEEEEEcc
Confidence 11 122345667788888887763
No 455
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.96 E-value=0.02 Score=50.39 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=44.3
Q ss_pred CEEEEEcc-CHHHHHHHHHHccCC-------CeEEEEcCCCCC--hh-----HHH-----hcCceecCCHHhhcCCCCEE
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPFN-------CNLLYHDRVKMD--PQ-----LEK-----ETGAKFEEDLDTMLPKCDIV 96 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~G-------~~V~~~d~~~~~--~~-----~~~-----~~g~~~~~~l~ell~~aDvV 96 (221)
.+|+|+|. |.+|..++..|...+ .+|.++|+.+.. .+ ..+ ...+....++.+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 37999998 999999999987644 479999985421 11 110 00111235667889999999
Q ss_pred EEeCC
Q 027577 97 VVNTP 101 (221)
Q Consensus 97 v~~~p 101 (221)
+.+.-
T Consensus 83 I~tAG 87 (325)
T cd01336 83 ILVGA 87 (325)
T ss_pred EEeCC
Confidence 98764
No 456
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.96 E-value=0.014 Score=50.20 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=45.9
Q ss_pred CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCC
Q 027577 37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP 101 (221)
Q Consensus 37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p 101 (221)
++|.|.| .|.||+.+++.|...|++|++.+++..........++.. .++++++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4789998 599999999999999999999998653322111122221 1245667788999887764
No 457
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=95.96 E-value=0.028 Score=49.77 Aligned_cols=89 Identities=20% Similarity=0.163 Sum_probs=58.0
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecC-------CHHhhc-----CCCCEEEEeCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDTML-----PKCDIVVVNTP 101 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~-------~l~ell-----~~aDvVv~~~p 101 (221)
.|.+|.|+|.|.+|...++.++.+|. +|++.+++....+.++++|+..+- ++.+.+ ..+|+|+-++.
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g 265 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIG 265 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCC
Confidence 48999999999999999999999999 699998876666666666653211 121211 13677777664
Q ss_pred CChhhhhcchHHHHhcCCCC-CEEEEcC
Q 027577 102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA 128 (221)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~g-a~lIn~s 128 (221)
... ...+.+..++++ ..++.++
T Consensus 266 ~~~-----~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 266 NVK-----VMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred ChH-----HHHHHHHhhccCCCeEEEEc
Confidence 211 123345566664 5666554
No 458
>PRK08324 short chain dehydrogenase; Validated
Probab=95.92 E-value=0.021 Score=54.99 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=34.8
Q ss_pred cCCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577 32 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM 70 (221)
Q Consensus 32 ~~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~ 70 (221)
..+.|+++.|.| .|.||+.+++.|...|++|++.+++..
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 357899999999 599999999999999999999998753
No 459
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.90 E-value=0.031 Score=49.36 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=48.6
Q ss_pred CEEEEEcc-CHHHHHHHHHHccCC-CeEEEE-cCCCCChhHHH-hc------C----ce--ecCC-HHhhcCCCCEEEEe
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPFN-CNLLYH-DRVKMDPQLEK-ET------G----AK--FEED-LDTMLPKCDIVVVN 99 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~G-~~V~~~-d~~~~~~~~~~-~~------g----~~--~~~~-l~ell~~aDvVv~~ 99 (221)
++|+|+|. |.+|+.+++.+.... +++... +.......... .. + .. .+.+ .++.+.++|+|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 47999995 999999999997765 676655 43221111110 00 0 01 0111 12345789999999
Q ss_pred CCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 100 ~p~~~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
+|.... ..+. . .....|..+|+.|
T Consensus 81 ~p~~~s-~~~~-~---~~~~~G~~VIDls 104 (341)
T TIGR00978 81 LPSEVA-EEVE-P---KLAEAGKPVFSNA 104 (341)
T ss_pred CCHHHH-HHHH-H---HHHHCCCEEEECC
Confidence 994322 1111 2 1234577777765
No 460
>PRK10083 putative oxidoreductase; Provisional
Probab=95.90 E-value=0.039 Score=47.81 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=60.7
Q ss_pred CCCCEEEEEccCHHHHHHHHHHcc-CCCe-EEEEcCCCCChhHHHhcCceec-----CCHHhhcC----CCCEEEEeCCC
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKP-FNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP----KCDIVVVNTPL 102 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~-~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~----~aDvVv~~~p~ 102 (221)
-.|.+|.|+|.|.+|..+++.++. +|.+ +++.++++.+.+.+.+.|+..+ .++.+.+. +.|+++-++..
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~ 238 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACH 238 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCC
Confidence 358899999999999999999986 6986 6777776655566666666422 12233332 24567666542
Q ss_pred ChhhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577 103 TEKTRGMFDKDRIAKMKKGVLIVNNARG 130 (221)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg 130 (221)
+. ...+.+..++++..+|+++..
T Consensus 239 -~~----~~~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 239 -PS----ILEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred -HH----HHHHHHHHhhcCCEEEEEccC
Confidence 11 124456778888888888643
No 461
>PLN02827 Alcohol dehydrogenase-like
Probab=95.89 E-value=0.038 Score=49.29 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=57.9
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-C------CHHhhc----C-CCCEEEEeCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E------DLDTML----P-KCDIVVVNTP 101 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-~------~l~ell----~-~aDvVv~~~p 101 (221)
.|.+|.|+|.|.+|...++.++.+|.+ |++.++++...+.++++|+..+ + +..+.+ . ..|+|+-++.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 272 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVG 272 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCC
Confidence 589999999999999999999999985 7788876655566666675321 1 111111 1 3677777664
Q ss_pred CChhhhhcchHHHHhcCCCC-CEEEEcC
Q 027577 102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA 128 (221)
Q Consensus 102 ~~~~t~~~i~~~~~~~mk~g-a~lIn~s 128 (221)
... .+ ...+..++++ ..++.++
T Consensus 273 ~~~----~~-~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 273 DTG----IA-TTALQSCSDGWGLTVTLG 295 (378)
T ss_pred ChH----HH-HHHHHhhccCCCEEEEEC
Confidence 211 11 2345566676 6666654
No 462
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=95.87 E-value=0.11 Score=46.69 Aligned_cols=99 Identities=21% Similarity=0.170 Sum_probs=56.5
Q ss_pred CEEEEEcc-CHHHHHHHHHHccCCC-------eEEEE--cCCCCChh-----HHHhc-----CceecCCHHhhcCCCCEE
Q 027577 37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYH--DRVKMDPQ-----LEKET-----GAKFEEDLDTMLPKCDIV 96 (221)
Q Consensus 37 ~~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~--d~~~~~~~-----~~~~~-----g~~~~~~l~ell~~aDvV 96 (221)
.||+|||. |++|..+|-.+...|. .+..+ |.+....+ ..+.. .+....+..+.+++||+|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV 124 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA 124 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence 58999999 9999999998865543 24444 65443221 11111 222223445778999999
Q ss_pred EEeCCC--Ch-hhh--------hcc---hHHHHhcCCCCCEEEEcCCCCccCHHH
Q 027577 97 VVNTPL--TE-KTR--------GMF---DKDRIAKMKKGVLIVNNARGAIMDTQA 137 (221)
Q Consensus 97 v~~~p~--~~-~t~--------~~i---~~~~~~~mk~ga~lIn~srg~~vd~~a 137 (221)
+++... .+ +++ .++ .....+.-++++++|.++ .++|.-.
T Consensus 125 VitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t 177 (387)
T TIGR01757 125 LLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNA 177 (387)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHH
Confidence 997642 11 111 111 111222234788888887 5555444
No 463
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=95.87 E-value=0.016 Score=43.93 Aligned_cols=119 Identities=20% Similarity=0.276 Sum_probs=66.7
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEE
Q 027577 47 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN 126 (221)
Q Consensus 47 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn 126 (221)
+.....+.|+. |++|.+++.. .. +++.+.++++|+++.... + .++++.++.++.=..|..
T Consensus 7 ~~~~~~~~l~~-~~~v~~~~~~--~~-----------~~~~~~l~~~d~ii~~~~-~-----~~~~~~l~~~~~Lk~I~~ 66 (133)
T PF00389_consen 7 LPDEEIERLEE-GFEVEFCDSP--SE-----------EELAERLKDADAIIVGSG-T-----PLTAEVLEAAPNLKLIST 66 (133)
T ss_dssp -SHHHHHHHHH-TSEEEEESSS--SH-----------HHHHHHHTTESEEEESTT-S-----TBSHHHHHHHTT-SEEEE
T ss_pred CCHHHHHHHHC-CceEEEeCCC--CH-----------HHHHHHhCCCeEEEEcCC-C-----CcCHHHHhccceeEEEEE
Confidence 34445556666 6677777721 11 134567788999987654 1 366777777744445555
Q ss_pred cCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC-CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCC
Q 027577 127 NARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA-PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGED 203 (221)
Q Consensus 127 ~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~-~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~ 203 (221)
.+-| + |.-++..+ .+.+|. ..-+-..-+. .+++- |+|.+ .++...+.+|+.+|++|++
T Consensus 67 ~~~G-~-d~id~~~a-~~~gI~--V~n~~g~~~~aVAE~a--------------~~T~e~~~~~~~~~~~ni~~~l~g~~ 127 (133)
T PF00389_consen 67 AGAG-V-DNIDLEAA-KERGIP--VTNVPGYNAEAVAEHA--------------GYTDEARERMAEIAAENIERFLNGEP 127 (133)
T ss_dssp SSSS-C-TTB-HHHH-HHTTSE--EEE-TTTTHHHHHHHH--------------TGBHHHHHHHHHHHHHHHHHHHTTST
T ss_pred cccc-c-CcccHHHH-hhCeEE--EEEeCCcCCcchhccc--------------hhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4444 3 44344444 444454 2221111110 01111 78888 7777889999999999987
Q ss_pred C
Q 027577 204 F 204 (221)
Q Consensus 204 ~ 204 (221)
+
T Consensus 128 ~ 128 (133)
T PF00389_consen 128 P 128 (133)
T ss_dssp -
T ss_pred C
Confidence 5
No 464
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.86 E-value=0.039 Score=48.21 Aligned_cols=89 Identities=20% Similarity=0.194 Sum_probs=59.8
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CCCCEEEEeCCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL 102 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDvVv~~~p~ 102 (221)
.|++|.|.|.|.+|..+++.++..|.+ |++.+++....+.++++|+..+ .++ .++. ...|+++-++..
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~ 245 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG 245 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCC
Confidence 488999999999999999999999995 8888876555555566665321 111 1222 247888776652
Q ss_pred ChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
. . .-.+.+..++++..+|+++
T Consensus 246 ~-~----~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 246 Q-D----TFEQALKVLKPGGTISNVN 266 (351)
T ss_pred H-H----HHHHHHHHhhcCCEEEEec
Confidence 1 1 1234566678888888765
No 465
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.85 E-value=0.029 Score=49.60 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=51.7
Q ss_pred CCCEEEEEcc-CHHHHHHHHHHcc--CC-CeEEEEcCCCCChhH--HHhcCceecCCHHhh-cCCCCEEEEeCCCChhhh
Q 027577 35 EGKTVGTVGC-GRIGKLLLQRLKP--FN-CNLLYHDRVKMDPQL--EKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTR 107 (221)
Q Consensus 35 ~g~~vgIIG~-G~iG~~iA~~l~~--~G-~~V~~~d~~~~~~~~--~~~~g~~~~~~l~el-l~~aDvVv~~~p~~~~t~ 107 (221)
.+.+|+|||. |.+|+.+.+.|.. +- .++..+......-+. +....... .++++. ++++|++++++|..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v-~~~~~~~~~~~Dvvf~a~p~~---- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTV-QDAAEFDWSQAQLAFFVAGRE---- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEE-EeCchhhccCCCEEEECCCHH----
Confidence 4679999995 9999999999987 43 355544322111110 11111222 244443 37899999999932
Q ss_pred hcchHHHHhc-CCCCCEEEEcC
Q 027577 108 GMFDKDRIAK-MKKGVLIVNNA 128 (221)
Q Consensus 108 ~~i~~~~~~~-mk~ga~lIn~s 128 (221)
+..+.... .+.|+.+||.|
T Consensus 78 --~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 78 --ASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred --HHHHHHHHHHHCCCEEEECC
Confidence 22222222 25689999988
No 466
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=95.85 E-value=0.049 Score=46.59 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=37.0
Q ss_pred CCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577 36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (221)
Q Consensus 36 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (221)
+.+|.|.|. |.+|..+++.++..|.+|++.+++....+.+.+.|.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~ 192 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGA 192 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC
Confidence 568999997 999999999999999999988887655555555554
No 467
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.85 E-value=0.049 Score=50.13 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=52.4
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhcCceec------C--
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE------E-- 84 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~------~-- 84 (221)
-.+++|.|||.|.+|...|..|+..|++|.++++.+.. .+.+.+.|+... .
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 218 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI 218 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCcc
Confidence 37899999999999999999999999999999865421 233455665421 1
Q ss_pred CHHhhcCCCCEEEEeCCCCh
Q 027577 85 DLDTMLPKCDIVVVNTPLTE 104 (221)
Q Consensus 85 ~l~ell~~aDvVv~~~p~~~ 104 (221)
.++++....|.|++++...+
T Consensus 219 ~~~~~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 219 SLDDLLEDYDAVFLGVGTYR 238 (467)
T ss_pred CHHHHHhcCCEEEEEeCCCC
Confidence 34555567999999986543
No 468
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.83 E-value=0.049 Score=47.32 Aligned_cols=87 Identities=21% Similarity=0.174 Sum_probs=57.8
Q ss_pred CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecC-----CHHh--hc--CCCCEEEEeCCCCh
Q 027577 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLDT--ML--PKCDIVVVNTPLTE 104 (221)
Q Consensus 35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~-----~l~e--ll--~~aDvVv~~~p~~~ 104 (221)
.|.+|.|.|. |.+|..+++.++..|.+|++.+.+. ..+.+++.|+..+. ...+ .. +..|+++-+... +
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-~ 254 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG-P 254 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH-H
Confidence 5889999998 9999999999999999988777544 44455555542211 1111 11 347888776651 1
Q ss_pred hhhhcchHHHHhcCCCCCEEEEcC
Q 027577 105 KTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
.....+..++++..+|+++
T Consensus 255 -----~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 255 -----LFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred -----HHHHHHHHhccCCEEEEec
Confidence 2244567778888887764
No 469
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=95.78 E-value=0.036 Score=46.43 Aligned_cols=87 Identities=23% Similarity=0.430 Sum_probs=60.6
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH----hcCce--e-cCCHHhhcC---CCCEEEE-----
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK----ETGAK--F-EEDLDTMLP---KCDIVVV----- 98 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~----~~g~~--~-~~~l~ell~---~aDvVv~----- 98 (221)
+.|++|.=||+| |..++..+...|.+|++.|.++...+.++ +.++. + ..+.+++.. +.|+|++
T Consensus 58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 789999999998 55788888889999999999876666554 22332 1 234566664 6899876
Q ss_pred eCCCChhhhhcchHHHHhcCCCCCEEEE
Q 027577 99 NTPLTEKTRGMFDKDRIAKMKKGVLIVN 126 (221)
Q Consensus 99 ~~p~~~~t~~~i~~~~~~~mk~ga~lIn 126 (221)
|+| +|+. +-....+.+|||.+++-
T Consensus 136 Hv~-dp~~---~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 136 HVP-DPES---FLRACAKLVKPGGILFL 159 (243)
T ss_pred ccC-CHHH---HHHHHHHHcCCCcEEEE
Confidence 455 2221 44557778899877754
No 470
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.77 E-value=0.04 Score=50.29 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=66.0
Q ss_pred EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhcCceec--CCHH-----hhcCCCCEEEEeCCCChh
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFE--EDLD-----TMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~--~~l~-----ell~~aDvVv~~~p~~~~ 105 (221)
+|.|||+|..|.+.|+.|...|++|.++|+..... +.....|+... ...+ +.+.+.|.|+......+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 68999999999999999999999999999764321 12334466432 1111 356789988875432222
Q ss_pred hhh----------cchH-HHH-hcCCC-CCEEEEcCCCCccCHHHHHHHHHhC
Q 027577 106 TRG----------MFDK-DRI-AKMKK-GVLIVNNARGAIMDTQAVVDACSSG 145 (221)
Q Consensus 106 t~~----------~i~~-~~~-~~mk~-ga~lIn~srg~~vd~~al~~al~~g 145 (221)
... ++.+ +.+ ..+++ ..+-|--+.|+--...-|...|+..
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~ 134 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAA 134 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence 111 1221 222 33333 3455666678777676666777653
No 471
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=95.77 E-value=0.032 Score=43.38 Aligned_cols=87 Identities=22% Similarity=0.309 Sum_probs=51.9
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~ 113 (221)
..|++|++||+ =.++++.++..+.++.++|+++.... ...+.......++++++||+|+++-. .-..+-+ ..
T Consensus 9 ~~~~~V~~VG~---f~P~~~~l~~~~~~v~v~d~~~~~~~--~~~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti-~~ 80 (147)
T PF04016_consen 9 GPGDKVGMVGY---FQPLVEKLKERGAEVRVFDLNPDNIG--EEPGDVPDEDAEEILPWADVVIITGS--TLVNGTI-DD 80 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG----SSCT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH-HH
T ss_pred cCCCEEEEEcC---cHHHHHHHhcCCCCEEEEECCCCCCC--CCCCcCCHHHHHHHHccCCEEEEEee--eeecCCH-HH
Confidence 56999999996 12377888888999999998762211 11111134567889999999988753 1111112 24
Q ss_pred HHhcCCCCCEEEEcC
Q 027577 114 RIAKMKKGVLIVNNA 128 (221)
Q Consensus 114 ~~~~mk~ga~lIn~s 128 (221)
.++..++++.++=.+
T Consensus 81 iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 81 ILELARNAREVILYG 95 (147)
T ss_dssp HHHHTTTSSEEEEES
T ss_pred HHHhCccCCeEEEEe
Confidence 555566565555444
No 472
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.76 E-value=0.057 Score=45.81 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=61.5
Q ss_pred CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-cCCHHhhc-CCCCEEEEeCCCChhhhhcch
Q 027577 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTML-PKCDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~~l~ell-~~aDvVv~~~p~~~~t~~~i~ 111 (221)
.|.++.|.|. |.+|+.+++.++.+|.+|+..+++....+.+++.|+.. ....+++. ...|+++-++.. . ..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~~~g~----~--~~ 205 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVDSVGG----P--QL 205 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEECCCc----H--HH
Confidence 5899999998 99999999999999999998887655555555566521 11111222 247777766541 1 23
Q ss_pred HHHHhcCCCCCEEEEcCC
Q 027577 112 KDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~sr 129 (221)
...+..|+++..+|+++.
T Consensus 206 ~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 206 ARALELLAPGGTVVSVGS 223 (305)
T ss_pred HHHHHHhcCCCEEEEEec
Confidence 456778888888888764
No 473
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=95.76 E-value=0.053 Score=46.89 Aligned_cols=90 Identities=24% Similarity=0.313 Sum_probs=60.0
Q ss_pred CCCEEEEEccCHHHHHHHHHHcc-CCCeEEEEcCCCCChhHHHhcCceec------CCHH----hhcCCCCEEEEeCCCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE------EDLD----TMLPKCDIVVVNTPLT 103 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~----ell~~aDvVv~~~p~~ 103 (221)
.|.+|.|.|.|.+|..+++.++. +|.+|++.++++...+.+++.|+..+ .+.. +.....|+++++.. .
T Consensus 162 ~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~-~ 240 (338)
T PRK09422 162 PGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAV-A 240 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEEeCC-C
Confidence 57899999999999999999997 59999999887666666666665321 1111 22234575655543 1
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
.. .-...++.++++..++.++.
T Consensus 241 ~~----~~~~~~~~l~~~G~~v~~g~ 262 (338)
T PRK09422 241 KA----AFNQAVDAVRAGGRVVAVGL 262 (338)
T ss_pred HH----HHHHHHHhccCCCEEEEEee
Confidence 21 23455677788888887753
No 474
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=95.75 E-value=0.12 Score=44.97 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=49.0
Q ss_pred CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh-h--------HHHhcCce--ecCCHHhhcCCCCEEEEeC
Q 027577 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-Q--------LEKETGAK--FEEDLDTMLPKCDIVVVNT 100 (221)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~--------~~~~~g~~--~~~~l~ell~~aDvVv~~~ 100 (221)
.+.|+||++||- -++.++++..+..+|++|.+..|....+ + .++..|.. ..+++ +.++.+|+|..-.
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 588999999996 4688999999999999999998754221 1 12233543 34565 5789999998744
No 475
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=95.75 E-value=0.043 Score=47.62 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=61.6
Q ss_pred CCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec----CCH----Hhhc--CCCCEEEEeCCC
Q 027577 34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE----EDL----DTML--PKCDIVVVNTPL 102 (221)
Q Consensus 34 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~~l----~ell--~~aDvVv~~~p~ 102 (221)
..|.+|.|.|.|.+|..+++.++..|+ +|++.+......+.+.++|+..+ .+. .++. ...|+++-+...
T Consensus 166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~ 245 (344)
T cd08284 166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAVGG 245 (344)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 358999999999999999999999997 78888665444444455563211 111 1222 347888777652
Q ss_pred ChhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577 103 TEKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (221)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg~ 131 (221)
. ......+..|+++..+|.++...
T Consensus 246 ~-----~~~~~~~~~l~~~g~~v~~g~~~ 269 (344)
T cd08284 246 A-----AALDLAFDLVRPGGVISSVGVHT 269 (344)
T ss_pred H-----HHHHHHHHhcccCCEEEEECcCC
Confidence 1 12344567788888888887543
No 476
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.72 E-value=0.061 Score=44.35 Aligned_cols=37 Identities=30% Similarity=0.297 Sum_probs=32.7
Q ss_pred CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK 69 (221)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~ 69 (221)
.+.++++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899999995 8999999999999999999888754
No 477
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=95.71 E-value=0.055 Score=47.00 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=53.6
Q ss_pred EEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-HH----Hh-----cCceecCCHHhhcCCCCEEEEeCCCC--h-h
Q 027577 41 TVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LE----KE-----TGAKFEEDLDTMLPKCDIVVVNTPLT--E-K 105 (221)
Q Consensus 41 IIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~----~~-----~g~~~~~~l~ell~~aDvVv~~~p~~--~-~ 105 (221)
|||.|.+|..+|..+...+. ++..+|......+ .+ .. ..+....+-.+.+++||+|+++.-.. + .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 69999999999999876665 6999998653221 11 11 11222223356789999999986431 1 1
Q ss_pred hh--------hcch--HHHHhcCCCCCEEEEcC
Q 027577 106 TR--------GMFD--KDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 106 t~--------~~i~--~~~~~~mk~ga~lIn~s 128 (221)
++ .++. .+.+....|.+++|+++
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 11 1111 11233356889999987
No 478
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.70 E-value=0.0076 Score=44.90 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=58.2
Q ss_pred HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----C----CHHhhcC--CCCEEEEeCCCChhhhhcchHHHH
Q 027577 47 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----E----DLDTMLP--KCDIVVVNTPLTEKTRGMFDKDRI 115 (221)
Q Consensus 47 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~----~l~ell~--~aDvVv~~~p~~~~t~~~i~~~~~ 115 (221)
||...++.++.+|.+|++.++++...+.++++|+..+ . .+.++.. ..|+|+-|++. ++ .....+
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-~~----~~~~~~ 76 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-GD----TLQEAI 76 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-HH----HHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc-HH----HHHHHH
Confidence 7888888899999999999998777778888885432 1 1224444 49999999872 22 334567
Q ss_pred hcCCCCCEEEEcCCCC
Q 027577 116 AKMKKGVLIVNNARGA 131 (221)
Q Consensus 116 ~~mk~ga~lIn~srg~ 131 (221)
..++++..++.++-..
T Consensus 77 ~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 77 KLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHEEEEEEEEEESSTS
T ss_pred HHhccCCEEEEEEccC
Confidence 7899999999887543
No 479
>PRK12861 malic enzyme; Reviewed
Probab=95.70 E-value=0.31 Score=47.57 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=97.3
Q ss_pred ccCCCCCEEEEEccCHHHHHHHHHHccCCC---eEEEEcCCC-----C----C---hhHHHhcCceecCCHHhhcCCCCE
Q 027577 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVK-----M----D---PQLEKETGAKFEEDLDTMLPKCDI 95 (221)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~---~V~~~d~~~-----~----~---~~~~~~~g~~~~~~l~ell~~aDv 95 (221)
+..|...||.|.|.|.-|..+++.+...|. +++.+|+.. . . ...++.. ...+|.|+++.+|+
T Consensus 184 gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~---~~~~L~eai~~adv 260 (764)
T PRK12861 184 GKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQET---DARTLAEVIGGADV 260 (764)
T ss_pred CCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhc---CCCCHHHHHhcCCE
Confidence 467889999999999999999999999998 689888543 1 1 1122221 23589999999997
Q ss_pred EEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEEC
Q 027577 96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT 175 (221)
Q Consensus 96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~t 175 (221)
++= +. ..+++.++.++.|.+..+|.=.|.-..--..+.... ..|... .+.- ..+.| =+..|+++-
T Consensus 261 liG-~S----~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe~a~~-~~g~ai-vaTG-------rs~~p-nQ~NN~l~F 325 (764)
T PRK12861 261 FLG-LS----AGGVLKAEMLKAMAARPLILALANPTPEIFPELAHA-TRDDVV-IATG-------RSDYP-NQVNNVLCF 325 (764)
T ss_pred EEE-cC----CCCCCCHHHHHHhccCCEEEECCCCCccCCHHHHHh-cCCCEE-EEeC-------CcCCC-Cccceeeec
Confidence 754 33 247899999999999999999987664211122222 334422 2221 11111 245689999
Q ss_pred CCCCcCCHH-------HHHHHHHHHHHHHHHc
Q 027577 176 PHVSGTTID-------LRYAAGVKDMLDRYFK 200 (221)
Q Consensus 176 PH~a~~t~~-------~~~~~~~~~~~~~~~~ 200 (221)
|-++-.... +.|.....+.|..+..
T Consensus 326 Pgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~ 357 (764)
T PRK12861 326 PYIFRGALDVGATTITREMEIAAVHAIAGLAE 357 (764)
T ss_pred chhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence 988543322 3443444455555443
No 480
>PLN02214 cinnamoyl-CoA reductase
Probab=95.69 E-value=0.032 Score=48.98 Aligned_cols=69 Identities=25% Similarity=0.231 Sum_probs=48.5
Q ss_pred CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChh--HHHhc-----Cce-------ecCCHHhhcCCCCEEE
Q 027577 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--LEKET-----GAK-------FEEDLDTMLPKCDIVV 97 (221)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~--~~~~~-----g~~-------~~~~l~ell~~aDvVv 97 (221)
.+.+++|.|.|. |.||+.+++.|...|++|.+.+|+..... ..... .+. ...+++++++.+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 467899999996 99999999999999999999887643211 01110 111 1134567788899988
Q ss_pred EeCC
Q 027577 98 VNTP 101 (221)
Q Consensus 98 ~~~p 101 (221)
-+..
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 7764
No 481
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.67 E-value=0.033 Score=46.50 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=47.3
Q ss_pred CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH--hcCcee-----c---CCHHhhc-CCCCEEEEeC
Q 027577 33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--ETGAKF-----E---EDLDTML-PKCDIVVVNT 100 (221)
Q Consensus 33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~--~~g~~~-----~---~~l~ell-~~aDvVv~~~ 100 (221)
.+.+++|.|+| .|.+|+.+++.|...|++|++..|+........ ..++.. . .++.+.+ ..+|+|+.+.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~ 93 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICAT 93 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECC
Confidence 46789999999 599999999999999999998887643221111 112221 1 1233445 5799999876
Q ss_pred CC
Q 027577 101 PL 102 (221)
Q Consensus 101 p~ 102 (221)
+.
T Consensus 94 g~ 95 (251)
T PLN00141 94 GF 95 (251)
T ss_pred CC
Confidence 54
No 482
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.64 E-value=0.033 Score=50.84 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=67.7
Q ss_pred EEEEccCHHHHH-HHHHHccCCCeEEEEcCCCCC-hhHHHhcCceecC-CHHhhcCCCCEEEEeCCC---Chhhh-----
Q 027577 39 VGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEE-DLDTMLPKCDIVVVNTPL---TEKTR----- 107 (221)
Q Consensus 39 vgIIG~G~iG~~-iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~-~l~ell~~aDvVv~~~p~---~~~t~----- 107 (221)
|-+||.|..|.+ +|+.|+..|++|.++|..... .+.+++.|+.... .-.+.++++|+|+..--- +|...
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 679999999998 999999999999999975422 2233445665432 123456789998876322 22211
Q ss_pred --hcch-HHHH-hcCC-CCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577 108 --GMFD-KDRI-AKMK-KGVLIVNNARGAIMDTQAVVDACSSGH 146 (221)
Q Consensus 108 --~~i~-~~~~-~~mk-~ga~lIn~srg~~vd~~al~~al~~g~ 146 (221)
.++. .+.+ ..++ ...+-|--+.|+--...-+...|+...
T Consensus 82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 125 (448)
T TIGR01082 82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125 (448)
T ss_pred CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence 1222 2233 2232 234556667888877777777787644
No 483
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=95.63 E-value=0.046 Score=47.26 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=46.0
Q ss_pred CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH---h-c----Cc-------eecCCHHhhcCCCCEEEE
Q 027577 35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---E-T----GA-------KFEEDLDTMLPKCDIVVV 98 (221)
Q Consensus 35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~---~-~----g~-------~~~~~l~ell~~aDvVv~ 98 (221)
.||++.|.| .|.||+.+++.|...|++|++.+++........ . . .+ ....+++++++.+|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 378999999 599999999999999999988776543221110 0 0 11 112345677888999887
Q ss_pred eCC
Q 027577 99 NTP 101 (221)
Q Consensus 99 ~~p 101 (221)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 764
No 484
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.63 E-value=0.089 Score=45.47 Aligned_cols=107 Identities=11% Similarity=0.066 Sum_probs=68.8
Q ss_pred CCEEEEEc-cCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcCC--CCEEEEeCCCChhhhhcch
Q 027577 36 GKTVGTVG-CGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 36 g~~vgIIG-~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDvVv~~~p~~~~t~~~i~ 111 (221)
..+|.|.| .|.+|..+.+.+...|.+ |..+++..-.. .-.|++.+.+++++-+. .|+.++++|. +.+...+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~---~v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l~ 81 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGT---TVLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAIF 81 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcc---eecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHHH
Confidence 56899999 699999999999998888 33345431011 23477778899998876 7999999992 22333332
Q ss_pred HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~ 148 (221)
+..+.=-+.++++..+-++ -++++|.+..++..++
T Consensus 82 -e~~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~gir 116 (286)
T TIGR01019 82 -EAIDAGIELIVCITEGIPV-HDMLKVKRYMEESGTR 116 (286)
T ss_pred -HHHHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCE
Confidence 2222111234444433333 3567888888887766
No 485
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.62 E-value=0.03 Score=50.47 Aligned_cols=84 Identities=18% Similarity=0.178 Sum_probs=55.4
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------hH----HHhcC----cee-
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------QL----EKETG----AKF- 82 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~~----~~~~g----~~~- 82 (221)
..|.+.+|.|||+|.+|..+|+.|...|. ++.++|...... +. ..+.+ +..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 46889999999999999999999999887 477887542110 00 01111 111
Q ss_pred ---c--CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHh
Q 027577 83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116 (221)
Q Consensus 83 ---~--~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~ 116 (221)
. .+..++++++|+|+.|+ .+..++..+++....
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~ 155 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVL 155 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHH
Confidence 1 22356788899888765 456677777665544
No 486
>PLN02427 UDP-apiose/xylose synthase
Probab=95.62 E-value=0.033 Score=49.63 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=48.2
Q ss_pred cccCCCCCEEEEEc-cCHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhc-------Ccee-------cCCHHhhcCCC
Q 027577 30 RAYDLEGKTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKET-------GAKF-------EEDLDTMLPKC 93 (221)
Q Consensus 30 ~~~~l~g~~vgIIG-~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~-------g~~~-------~~~l~ell~~a 93 (221)
.+..+..|||.|.| .|.||+.+++.|... |++|++++++.......... +++. ..+++++++++
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 35567788999999 599999999999887 58999999754222111111 1211 12356677889
Q ss_pred CEEEEeC
Q 027577 94 DIVVVNT 100 (221)
Q Consensus 94 DvVv~~~ 100 (221)
|+|+-+.
T Consensus 88 d~ViHlA 94 (386)
T PLN02427 88 DLTINLA 94 (386)
T ss_pred CEEEEcc
Confidence 9887655
No 487
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.60 E-value=0.033 Score=48.93 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=48.6
Q ss_pred ccCCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-Hh----cCcee-------cCCHHhhcCCCCEEE
Q 027577 31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KE----TGAKF-------EEDLDTMLPKCDIVV 97 (221)
Q Consensus 31 ~~~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~----~g~~~-------~~~l~ell~~aDvVv 97 (221)
+++-++++|.|.| .|.||+.+++.|...|++|++.+++....... .. .++.. ...+++++++.|+|+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 5678899999999 69999999999999999999887754322111 11 01211 123456677889887
Q ss_pred EeCC
Q 027577 98 VNTP 101 (221)
Q Consensus 98 ~~~p 101 (221)
-+..
T Consensus 85 h~A~ 88 (353)
T PLN02896 85 HVAA 88 (353)
T ss_pred ECCc
Confidence 6653
No 488
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=95.60 E-value=0.027 Score=49.47 Aligned_cols=37 Identities=30% Similarity=0.251 Sum_probs=33.1
Q ss_pred CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577 33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK 69 (221)
Q Consensus 33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~ 69 (221)
.+++|+|.|.| .|.||+.+++.|...|.+|+++|+..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46789999999 59999999999999999999999753
No 489
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.60 E-value=0.042 Score=48.74 Aligned_cols=87 Identities=17% Similarity=0.322 Sum_probs=50.5
Q ss_pred CCCEEEEEcc-CHHHHHHHHHHcc-CCCe---EEEEcCC-C--CChhHH-HhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577 35 EGKTVGTVGC-GRIGKLLLQRLKP-FNCN---LLYHDRV-K--MDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (221)
Q Consensus 35 ~g~~vgIIG~-G~iG~~iA~~l~~-~G~~---V~~~d~~-~--~~~~~~-~~~g~~~~~~l~ell~~aDvVv~~~p~~~~ 105 (221)
.+.+|||||. |.+|+.+.+.|.. -.+. +..+... . ...... .+.-+... +.++ ++++|++++++|.. .
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~-~~~~-~~~~Divf~a~~~~-~ 80 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEA-KINS-FEGVDIAFFSAGGE-V 80 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeC-CHHH-hcCCCEEEECCChH-H
Confidence 3579999995 9999999999984 4555 4444322 1 111110 01112222 3344 47899999999832 2
Q ss_pred hhhcchHHHHhcCCCCCEEEEcC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
...+ ... ..+.|+.+||.|
T Consensus 81 s~~~-~~~---~~~~G~~VID~S 99 (347)
T PRK06728 81 SRQF-VNQ---AVSSGAIVIDNT 99 (347)
T ss_pred HHHH-HHH---HHHCCCEEEECc
Confidence 2222 111 235688899888
No 490
>PRK06182 short chain dehydrogenase; Validated
Probab=95.59 E-value=0.028 Score=47.35 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=45.4
Q ss_pred CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee----cCC---HHhhcC-------CCCEEEEe
Q 027577 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF----EED---LDTMLP-------KCDIVVVN 99 (221)
Q Consensus 35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~----~~~---l~ell~-------~aDvVv~~ 99 (221)
.++++.|.|. |.||+.+++.|...|++|++.+|+....+.....++.. +.+ ++++++ ..|+|+.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ 81 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN 81 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4789999995 89999999999999999999988653322222222221 122 233333 67999887
Q ss_pred CC
Q 027577 100 TP 101 (221)
Q Consensus 100 ~p 101 (221)
..
T Consensus 82 ag 83 (273)
T PRK06182 82 AG 83 (273)
T ss_pred CC
Confidence 64
No 491
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=95.59 E-value=0.047 Score=46.92 Aligned_cols=88 Identities=23% Similarity=0.186 Sum_probs=58.6
Q ss_pred CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CCCCEEEEeCCCC
Q 027577 35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT 103 (221)
Q Consensus 35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDvVv~~~p~~ 103 (221)
.|.+|.|.| .|.+|..+++.++.+|++|++.+++....+.++++|+..+ .++.+.+ ...|+|+-++..
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~- 221 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGG- 221 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCH-
Confidence 588999999 6999999999999999999888876655566666665321 1221111 235777665541
Q ss_pred hhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 104 EKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 104 ~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
+ .....+..++++..++.++
T Consensus 222 ~-----~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 222 E-----FSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred H-----HHHHHHHhhccCCEEEEEc
Confidence 1 1244566677777777764
No 492
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.58 E-value=0.03 Score=38.42 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=30.2
Q ss_pred EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM 70 (221)
Q Consensus 38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~ 70 (221)
+|.|||.|.+|-.+|..++.+|.+|.++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 588999999999999999999999999988653
No 493
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=95.54 E-value=0.067 Score=47.10 Aligned_cols=89 Identities=19% Similarity=0.164 Sum_probs=63.3
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceecCCH----------HhhcC-CCCEEEEeCCC
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDL----------DTMLP-KCDIVVVNTPL 102 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l----------~ell~-~aDvVv~~~p~ 102 (221)
.|.+++|+|+|.+|-+..+.++..|.. |++.|.++.+.+.++++|...+-+. .++-. .+|+.+-++-.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~ 264 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGN 264 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCC
Confidence 589999999999999999999999985 9999999888888999987643222 22333 58888887763
Q ss_pred ChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 103 ~~~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
.+ .-++.++...++...|-++
T Consensus 265 ~~-----~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 265 VE-----VMRQALEATHRGGTSVIIG 285 (366)
T ss_pred HH-----HHHHHHHHHhcCCeEEEEe
Confidence 32 2234455555554444444
No 494
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.52 E-value=0.11 Score=45.00 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=69.6
Q ss_pred CCEEEEEcc-CHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcCC--CCEEEEeCCCChhhhhcch
Q 027577 36 GKTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKTRGMFD 111 (221)
Q Consensus 36 g~~vgIIG~-G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDvVv~~~p~~~~t~~~i~ 111 (221)
..+|.|.|. |.+|+.+.+.|..+|++ ++.+++..-.. .-.|+..+.+++++-+. .|+.++++|. +.+...+.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~---~v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l~ 83 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGT---TVLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAIL 83 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCC---eEeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHHH
Confidence 568999995 99999999999998886 44556641011 13477778899998887 8999999992 22333332
Q ss_pred HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 027577 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150 (221)
Q Consensus 112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a 150 (221)
+..+.=-+.++++..+- ..-+++.|.+..+++.++-.
T Consensus 84 -e~~~~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girvl 120 (291)
T PRK05678 84 -EAIDAGIDLIVCITEGI-PVLDMLEVKAYLERKKTRLI 120 (291)
T ss_pred -HHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEE
Confidence 23221112334444332 33334488888888877733
No 495
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=95.51 E-value=0.063 Score=47.42 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=50.0
Q ss_pred CC-CCCEEEEEccC-------HHHHHHHHHHccCCCeEEEEcC-CCC--ChhH-------HHhcC--ceecCCHHhhcCC
Q 027577 33 DL-EGKTVGTVGCG-------RIGKLLLQRLKPFNCNLLYHDR-VKM--DPQL-------EKETG--AKFEEDLDTMLPK 92 (221)
Q Consensus 33 ~l-~g~~vgIIG~G-------~iG~~iA~~l~~~G~~V~~~d~-~~~--~~~~-------~~~~g--~~~~~~l~ell~~ 92 (221)
.+ .|+||+|++.| ++.++++..+..+|++|.+..| ... ..+. +...| +....++++++++
T Consensus 165 ~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~ 244 (335)
T PRK04523 165 TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAG 244 (335)
T ss_pred CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCC
Confidence 36 79999876543 7899999999999999999988 432 2111 12334 4456899999999
Q ss_pred CCEEEEeC
Q 027577 93 CDIVVVNT 100 (221)
Q Consensus 93 aDvVv~~~ 100 (221)
+|+|..-.
T Consensus 245 aDvvy~~~ 252 (335)
T PRK04523 245 ADVVYAKS 252 (335)
T ss_pred CCEEEece
Confidence 99998754
No 496
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.51 E-value=0.065 Score=49.30 Aligned_cols=70 Identities=26% Similarity=0.410 Sum_probs=54.8
Q ss_pred cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhcCcee--------
Q 027577 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKF-------- 82 (221)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~-------- 82 (221)
....|++|+|||.|.-|.+.|..|...|+.|++|++.... .+.+...|++.
T Consensus 119 ~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~ 198 (457)
T COG0493 119 GSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR 198 (457)
T ss_pred CCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC
Confidence 3567899999999999999999999999999999876532 12233345431
Q ss_pred cCCHHhhcCCCCEEEEeCC
Q 027577 83 EEDLDTMLPKCDIVVVNTP 101 (221)
Q Consensus 83 ~~~l~ell~~aDvVv~~~p 101 (221)
--++++++++.|.|++++.
T Consensus 199 ~it~~~L~~e~Dav~l~~G 217 (457)
T COG0493 199 DITLEELLKEYDAVFLATG 217 (457)
T ss_pred cCCHHHHHHhhCEEEEecc
Confidence 2478999999999999875
No 497
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=95.50 E-value=0.061 Score=46.58 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=59.4
Q ss_pred CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecCC-----HHhhc---CCCCEEEEeCCCChh
Q 027577 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEED-----LDTML---PKCDIVVVNTPLTEK 105 (221)
Q Consensus 35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~-----l~ell---~~aDvVv~~~p~~~~ 105 (221)
.|.+|.|.|.|.+|+.+++.++.+|. +|++.+++....+.+.+.+...+-+ +.++. ...|+++-+.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~- 243 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPA- 243 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCCHH-
Confidence 78999999999999999999999998 7888887654444545555422111 11222 22678777654211
Q ss_pred hhhcchHHHHhcCCCCCEEEEcCC
Q 027577 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (221)
Q Consensus 106 t~~~i~~~~~~~mk~ga~lIn~sr 129 (221)
...+.+..|+++..+|+++.
T Consensus 244 ----~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 244 ----ALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred ----HHHHHHHHHhcCCEEEEEec
Confidence 12345677788888887753
No 498
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.49 E-value=0.027 Score=48.37 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=35.1
Q ss_pred ccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK 69 (221)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~ 69 (221)
...+.++++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45788999999995 9999999999999999999999864
No 499
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.47 E-value=0.021 Score=50.86 Aligned_cols=66 Identities=20% Similarity=0.123 Sum_probs=44.0
Q ss_pred CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce-------ecCCHHhhcCCCCEEEEeC
Q 027577 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNT 100 (221)
Q Consensus 35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------~~~~l~ell~~aDvVv~~~ 100 (221)
.+|+|.|.|. |.||+.+++.|...|++|+++++.............. ...++..+++++|+|+-+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 4789999996 9999999999999999999998743211000000111 1122344567899888665
No 500
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=95.46 E-value=0.078 Score=45.69 Aligned_cols=88 Identities=20% Similarity=0.182 Sum_probs=57.4
Q ss_pred CCEEEEEc-cCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceec----CCHHhhc-----CCCCEEEEeCCCCh
Q 027577 36 GKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE----EDLDTML-----PKCDIVVVNTPLTE 104 (221)
Q Consensus 36 g~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~----~~l~ell-----~~aDvVv~~~p~~~ 104 (221)
|.+|.|+| .|.+|+.+++.++..| .+|++.+.+....+.+.+.|+..+ .+..+.+ +..|+++-+++..
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~~~~- 228 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDTD- 228 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEccCcH-
Confidence 78999999 5999999999999999 999998876655555555554211 1111111 2467776665421
Q ss_pred hhhhcchHHHHhcCCCCCEEEEcC
Q 027577 105 KTRGMFDKDRIAKMKKGVLIVNNA 128 (221)
Q Consensus 105 ~t~~~i~~~~~~~mk~ga~lIn~s 128 (221)
......+..++++..+++++
T Consensus 229 ----~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 229 ----QHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred ----HHHHHHHHHhcCCCEEEEec
Confidence 12234466677777777764
Done!