Query 027578
Match_columns 221
No_of_seqs 224 out of 569
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 20:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmh_B Partitioning defective- 97.2 0.0011 3.6E-08 50.3 6.9 71 126-196 5-76 (86)
2 1vd2_A Protein kinase C, IOTA 96.9 0.0028 9.4E-08 48.0 7.1 59 126-186 5-64 (89)
3 2kkc_A Sequestosome-1; P62, PB 95.5 0.031 1.1E-06 43.2 6.5 61 126-186 4-80 (102)
4 2ktr_A Sequestosome-1; autopha 95.1 0.056 1.9E-06 42.8 6.8 61 126-186 19-95 (117)
5 1q1o_A Cell division control p 94.6 0.11 3.7E-06 40.1 7.1 70 127-196 5-86 (98)
6 1pqs_A Cell division control p 93.2 0.061 2.1E-06 39.6 3.2 54 143-196 6-65 (77)
7 1oey_A P67-PHOX, neutrophil cy 92.4 0.7 2.4E-05 34.4 8.0 70 128-200 6-78 (83)
8 2bkf_A Zinc-finger protein NBR 89.1 1.3 4.5E-05 33.5 6.8 55 128-184 7-61 (87)
9 1wj6_A KIAA0049 protein, RSGI 87.4 1.4 4.7E-05 34.2 6.2 65 127-195 14-78 (101)
10 1oey_J P40-PHOX, neutrophil cy 87.3 0.84 2.9E-05 35.7 4.9 41 144-186 28-68 (107)
11 1e8p_A Endoglucanase, dockerin 56.1 3.2 0.00011 28.1 0.6 15 169-183 19-33 (46)
12 2npt_A Dual specificity mitoge 35.3 83 0.0028 24.3 5.7 58 128-186 15-73 (106)
13 3brc_A Conserved protein of un 34.9 9.6 0.00033 31.5 0.4 10 9-18 101-110 (156)
14 2j4m_A Endoglucanase 45A; dock 32.6 9.9 0.00034 29.4 0.1 13 170-182 21-33 (100)
15 3o27_A Putative uncharacterize 30.9 24 0.00084 25.5 2.0 27 157-183 32-59 (68)
16 3ry0_A Putative tautomerase; o 27.7 39 0.0013 22.2 2.5 40 151-190 20-59 (65)
17 1wgr_A Growth factor receptor- 26.8 1.7E+02 0.0058 22.0 6.2 39 126-165 8-46 (100)
18 1wjn_A Tubulin-folding protein 26.7 1.7E+02 0.0058 20.6 6.7 41 135-177 21-61 (97)
19 3m21_A Probable tautomerase HP 25.3 89 0.003 20.5 4.0 40 151-190 23-62 (67)
20 2dzi_A Ubiquitin-like protein 24.8 1.5E+02 0.0052 19.4 5.6 47 126-174 6-53 (81)
21 3mb2_A 4-oxalocrotonate tautom 23.7 48 0.0017 22.3 2.4 40 151-190 21-60 (72)
22 3abf_A 4-oxalocrotonate tautom 23.5 68 0.0023 20.4 3.0 40 151-190 21-60 (64)
23 1otf_A 4-oxalocrotonate tautom 22.7 51 0.0017 20.8 2.3 38 151-188 20-57 (62)
24 2qsi_A Putative hydrogenase ex 21.9 55 0.0019 25.7 2.7 53 127-197 68-120 (137)
25 2kj6_A Tubulin folding cofacto 21.2 2.4E+02 0.0082 20.4 6.5 53 127-179 12-67 (97)
26 2opa_A Probable tautomerase YW 21.0 63 0.0022 20.4 2.4 36 151-187 20-56 (61)
27 1ndd_A NEDD8, protein (ubiquit 20.8 1.7E+02 0.006 18.7 5.0 43 130-174 3-46 (76)
28 2i1s_A Hypothetical protein; m 20.6 82 0.0028 25.4 3.6 40 126-165 7-48 (188)
29 2x4k_A 4-oxalocrotonate tautom 20.5 46 0.0016 20.8 1.7 34 151-184 23-57 (63)
30 3bux_B E3 ubiquitin-protein li 20.0 1E+02 0.0035 28.2 4.4 37 147-183 248-295 (329)
No 1
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=97.17 E-value=0.0011 Score=50.31 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=56.4
Q ss_pred CcceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCC-ChHHHhhcce
Q 027578 126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDV-PWDMFVDSCK 196 (221)
Q Consensus 126 ~~~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDv-PW~~Fv~svk 196 (221)
+..-||...|.+--=-.||-....+|++|+..|+++|.+..+.+++.|.|.|||++-+=++ -..+=+.+++
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEeeecCHHHHHHHHHhCC
Confidence 4577898888884444666677899999999999999987789999999999999988766 2333345665
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.91 E-value=0.0028 Score=48.04 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=46.5
Q ss_pred CcceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCC-ceEeEEecCCCCeEEecCC
Q 027578 126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI-DYVPTYEDKDGDWMLVGDV 186 (221)
Q Consensus 126 ~~~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~-~~~l~YeD~eGD~mLVGDv 186 (221)
+..=||++..|.-+ .+.+..--+|++|.+.|..+|..... .+++.|.|.|||+.-+-..
T Consensus 5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSH
T ss_pred CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCH
Confidence 34678999999744 44444456999999999999997543 6999999999999776543
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.54 E-value=0.031 Score=43.19 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=46.7
Q ss_pred CcceEEEEEcCc----ccceeeccCC-----------cCCHHHHHHHHHhhhccCC-CceEeEEecCCCCeEEecCC
Q 027578 126 NVAFVKVSMDGA----PYLRKVDLKL-----------YKSYQELSDALGKMFSSFT-IDYVPTYEDKDGDWMLVGDV 186 (221)
Q Consensus 126 ~~~~vKV~MdG~----~igRkvDL~~-----------~~sY~eL~~~L~~MF~~~~-~~~~l~YeD~eGD~mLVGDv 186 (221)
...-||++..|. .--|.+-|.. ..+|++|...+.++|.... ..|++.|.|.|||+.-+-+.
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSH
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCH
Confidence 367789998762 2445555532 2489999999999997544 47999999999999988766
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=95.08 E-value=0.056 Score=42.84 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=45.9
Q ss_pred CcceEEEEEcCc----ccceeeccC-----------CcCCHHHHHHHHHhhhccCC-CceEeEEecCCCCeEEecCC
Q 027578 126 NVAFVKVSMDGA----PYLRKVDLK-----------LYKSYQELSDALGKMFSSFT-IDYVPTYEDKDGDWMLVGDV 186 (221)
Q Consensus 126 ~~~~vKV~MdG~----~igRkvDL~-----------~~~sY~eL~~~L~~MF~~~~-~~~~l~YeD~eGD~mLVGDv 186 (221)
...-||++..|. .=-|++-|. .-.+|++|...+.++|.... ..|++.|.|.|||+.-+-..
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSH
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCH
Confidence 367899999751 233555443 24599999999999996433 58999999999999888765
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=94.65 E-value=0.11 Score=40.10 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=53.9
Q ss_pred cceEEEEEcCc------ccceeeccCCcCCHHHHHHHHHhhhccCC-----CceEeEEecCCCCeEEecCC-ChHHHhhc
Q 027578 127 VAFVKVSMDGA------PYLRKVDLKLYKSYQELSDALGKMFSSFT-----IDYVPTYEDKDGDWMLVGDV-PWDMFVDS 194 (221)
Q Consensus 127 ~~~vKV~MdG~------~igRkvDL~~~~sY~eL~~~L~~MF~~~~-----~~~~l~YeD~eGD~mLVGDv-PW~~Fv~s 194 (221)
..-|||+-+.. .=.|.|=...--+|++|+..+.+-|.... ...++-|+|.|||+...++. =|++-+.+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 46788887742 12366767788899999999999999642 23799999999999877765 79988887
Q ss_pred ce
Q 027578 195 CK 196 (221)
Q Consensus 195 vk 196 (221)
++
T Consensus 85 ~~ 86 (98)
T 1q1o_A 85 LA 86 (98)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 6
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=93.21 E-value=0.061 Score=39.57 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=42.7
Q ss_pred eccCCcCCHHHHHHHHHhhhccC-----CCceEeEEecCCCCeEEecC-CChHHHhhcce
Q 027578 143 VDLKLYKSYQELSDALGKMFSSF-----TIDYVPTYEDKDGDWMLVGD-VPWDMFVDSCK 196 (221)
Q Consensus 143 vDL~~~~sY~eL~~~L~~MF~~~-----~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~svk 196 (221)
|=...--+|++|+..+.+-|..+ ....++-|+|.|||+...++ .=|++-+.++|
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 33444567999999999999965 35789999999999987665 47998888763
No 7
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=92.36 E-value=0.7 Score=34.42 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=58.5
Q ss_pred ceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEec-CCCCeEEecCCChHHHhhcce--eeEE
Q 027578 128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYED-KDGDWMLVGDVPWDMFVDSCK--RLRI 200 (221)
Q Consensus 128 ~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD-~eGD~mLVGDvPW~~Fv~svk--RLrI 200 (221)
.=|||+.. +.-.|....=-+|.+|...|.+-+......-+|-|.| .+|.|++.+|.=|+.-...++ ||++
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEE
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEE
Confidence 45677766 7778888888899999999999999776688999999 688889999999998887754 5655
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=89.06 E-value=1.3 Score=33.46 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=44.2
Q ss_pred ceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEec
Q 027578 128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVG 184 (221)
Q Consensus 128 ~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVG 184 (221)
.-+||..-|...---|.-..--++++|...+..+|+.. .++|.|.|.|||-.-|=
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~DEenD~v~i~ 61 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSIN 61 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEEEEC
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEEcCCCCEEEEe
Confidence 45789999985444464445778999999999999964 67999999999988764
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=87.38 E-value=1.4 Score=34.20 Aligned_cols=65 Identities=8% Similarity=0.063 Sum_probs=50.2
Q ss_pred cceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCCChHHHhhcc
Q 027578 127 VAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDMFVDSC 195 (221)
Q Consensus 127 ~~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDvPW~~Fv~sv 195 (221)
..-+||..-|...---|.-..--++++|...+..+|+.. .++|.|.|.|||-.-|= -+.+|-+.+
T Consensus 14 ~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~i~--Sq~E~eEAl 78 (101)
T 1wj6_A 14 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSIN--SQGEYEEAL 78 (101)
T ss_dssp CEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEECCC--SHHHHHHHH
T ss_pred cEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEEEe--cHHHHHHHH
Confidence 456799999986554575555778999999999999974 67999999999998773 355555443
No 10
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.34 E-value=0.84 Score=35.75 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=35.8
Q ss_pred ccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCC
Q 027578 144 DLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDV 186 (221)
Q Consensus 144 DL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDv 186 (221)
||+.--.|.+|+.-..+-|.. .+..|-|.|.|||+.-+=|.
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~--~DIaLNYrD~eGDLIrildd 68 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQR--EDIALNYRDAEGDLVRLLSD 68 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCC--SSEEEEEECTTSCEEECCSH
T ss_pred ccccCCCHHHHHHHHHHHhcc--cceeeeeecCCCCEEEEcch
Confidence 678888999999999999994 47899999999999877655
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=56.14 E-value=3.2 Score=28.05 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=12.1
Q ss_pred eEeEEecCCCCeEEe
Q 027578 169 YVPTYEDKDGDWMLV 183 (221)
Q Consensus 169 ~~l~YeD~eGD~mLV 183 (221)
-.++|+|.||+|=.-
T Consensus 19 c~V~YtD~dG~WGVe 33 (46)
T 1e8p_A 19 TKVEYTDASGQWGVQ 33 (46)
T ss_dssp SCEEEEETTEEEEEE
T ss_pred ceEEEEcCCCccccC
Confidence 358999999999643
No 12
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=35.30 E-value=83 Score=24.26 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=41.7
Q ss_pred ceEEEEEc-CcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCC
Q 027578 128 AFVKVSMD-GAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDV 186 (221)
Q Consensus 128 ~~vKV~Md-G~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDv 186 (221)
.-+.+... |..+--.||-...=+|.+|+.++.+..-.-+ --.+-|||.+||.+-|--+
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT-~TAFeYEDE~gDRITVRSD 73 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEAT-TTAFEYEDEDGDRITVRSD 73 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSC-CSEEEEECTTSCEEEECSH
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccce-eeeeeeccccCCeeEEcch
Confidence 44555555 5567778887777899999999998776433 3466799999999888543
No 13
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=34.91 E-value=9.6 Score=31.47 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=8.3
Q ss_pred cccCCCCCCC
Q 027578 9 LRLGLPGGNG 18 (221)
Q Consensus 9 LrLGLPG~~~ 18 (221)
=|||.||+++
T Consensus 101 GRLGvPGSGS 110 (156)
T 3brc_A 101 GRLGVPGSGS 110 (156)
T ss_dssp EECSSTTSCE
T ss_pred ccccCCCCcc
Confidence 3999999874
No 14
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=32.59 E-value=9.9 Score=29.38 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.3
Q ss_pred EeEEecCCCCeEE
Q 027578 170 VPTYEDKDGDWML 182 (221)
Q Consensus 170 ~l~YeD~eGD~mL 182 (221)
.++|+|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 6899999999964
No 15
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=30.93 E-value=24 Score=25.45 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=20.0
Q ss_pred HHHhhhccC-CCceEeEEecCCCCeEEe
Q 027578 157 ALGKMFSSF-TIDYVPTYEDKDGDWMLV 183 (221)
Q Consensus 157 ~L~~MF~~~-~~~~~l~YeD~eGD~mLV 183 (221)
+..+-+++. ..++.++++|++|+.+|+
T Consensus 32 eI~kaLgIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 32 DIAEALDIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp HHHHHTTCCTTCCEEEEEEEETTEEEEE
T ss_pred HHHHHhCCCCCCEEEEEEecCCCeEEEE
Confidence 455555653 238999999999999886
No 16
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=27.74 E-value=39 Score=22.18 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCCChHH
Q 027578 151 YQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDM 190 (221)
Q Consensus 151 Y~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDvPW~~ 190 (221)
++.|.++|.+-|++......+++++.+.+-+-+|..++.+
T Consensus 20 ~~~it~~~~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~~e 59 (65)
T 3ry0_A 20 GEALTAAAHETLGTPVEAVRVIVEETPPERWFVGGRSVAE 59 (65)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEEHHH
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEEHHH
Confidence 5677777777787765555566666665555667777654
No 17
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=26.84 E-value=1.7e+02 Score=22.02 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=32.4
Q ss_pred CcceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccC
Q 027578 126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSF 165 (221)
Q Consensus 126 ~~~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~ 165 (221)
...+|||+++.. -.+.|+...--.=.++.+.|..-+.+.
T Consensus 8 ~k~vvkvf~~Dg-ssksi~V~~~~Ta~dv~~~L~~K~~~~ 46 (100)
T 1wgr_A 8 RPHVVKVYSEDG-ACRSVEVAAGATARHVCEMLVQRAHAL 46 (100)
T ss_dssp SCEEEEEEETTS-CEEEEEECTTCCHHHHHHHHHCSSSCC
T ss_pred CCEEEEEEecCC-CEEEEEECCCCcHHHHHHHHHHHcCCC
Confidence 457999999766 458999999999999999988877753
No 18
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.74 E-value=1.7e+02 Score=20.63 Aligned_cols=41 Identities=10% Similarity=0.171 Sum_probs=33.0
Q ss_pred cCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCC
Q 027578 135 DGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKD 177 (221)
Q Consensus 135 dG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~e 177 (221)
+|..+-++|+ ..-.-.+|...|+..|++....-+|.|.|.+
T Consensus 21 ~~~~~e~~l~--~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~ 61 (97)
T 1wjn_A 21 ERQILEKQLP--DSMTVQKVKGLLSRLLKVPVSELLLSYESSK 61 (97)
T ss_dssp SSCCEEEEEE--TTSBHHHHHHHHHTTTTCCTTTCEEEEECTT
T ss_pred CCcEEEEECC--CCCCHHHHHHHHHHHHCCChhHeEEEEEcCC
Confidence 5667777777 4568899999999999987778888888753
No 19
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=25.35 E-value=89 Score=20.54 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCCChHH
Q 027578 151 YQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDM 190 (221)
Q Consensus 151 Y~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDvPW~~ 190 (221)
|+.|.++|.+-|++....-.+++++.+-+-+-+|..+..+
T Consensus 23 ~~~lt~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~~e 62 (67)
T 3m21_A 23 IEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHH 62 (67)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEEECCTTTEEETTEEHHH
T ss_pred HHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCEEHHH
Confidence 6677777777777765555555555554444456665543
No 20
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.77 E-value=1.5e+02 Score=19.42 Aligned_cols=47 Identities=6% Similarity=0.047 Sum_probs=34.8
Q ss_pred CcceEEEE-EcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEe
Q 027578 126 NVAFVKVS-MDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYE 174 (221)
Q Consensus 126 ~~~~vKV~-MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~Ye 174 (221)
..+.+.|. ..|..+ .|++..-..-.+|...++..+++....-.|.|.
T Consensus 6 ~~m~i~vk~~~g~~~--~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 6 SGMQLTVKALQGREC--SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp SSEEEEEEETTSCEE--EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CcEEEEEEeCCCCEE--EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 34555555 356544 467777789999999999999987777888884
No 21
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=23.69 E-value=48 Score=22.28 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCCChHH
Q 027578 151 YQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDM 190 (221)
Q Consensus 151 Y~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDvPW~~ 190 (221)
|..|.++|.+.|++......+++++.+.+-+-+|..+..+
T Consensus 21 ~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~~e 60 (72)
T 3mb2_A 21 ARALSAAAAAAFDVPLAEVRLIIQEVPPTHWTVGGISMAE 60 (72)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEEECGGGEEETTEETTC
T ss_pred HHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEEHHH
Confidence 5677777778888766566667777765555556666543
No 22
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=23.49 E-value=68 Score=20.43 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCCChHH
Q 027578 151 YQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDM 190 (221)
Q Consensus 151 Y~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDvPW~~ 190 (221)
|.+|.+.|.+.+++....-.+.++|.+.+-+-+|..++.+
T Consensus 21 ~~~lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~~~~ 60 (64)
T 3abf_A 21 VRRLTEMASRLLGEPYEEVRVILYEVRRDQWAAGGVLFSD 60 (64)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEEECGGGEEETTEEHHH
T ss_pred HHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEEhHh
Confidence 5566666666666654455566666665434445555443
No 23
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=22.75 E-value=51 Score=20.84 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCCCh
Q 027578 151 YQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPW 188 (221)
Q Consensus 151 Y~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDvPW 188 (221)
|..|.++|.+.|++......+++.|.+.+-+-+|..++
T Consensus 20 ~~~i~~~l~~~lg~p~~~v~v~i~e~~~~~w~~~G~~~ 57 (62)
T 1otf_A 20 IRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGGEPA 57 (62)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEEEECGGGEEETTEET
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEEeCHHHeEECCEEH
Confidence 66777788888887655555556666544334444443
No 24
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=21.89 E-value=55 Score=25.69 Aligned_cols=53 Identities=8% Similarity=0.099 Sum_probs=43.6
Q ss_pred cceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCCChHHHhhccee
Q 027578 127 VAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDMFVDSCKR 197 (221)
Q Consensus 127 ~~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDvPW~~Fv~svkR 197 (221)
-.|+||..|-. .+|..-|++..+--.+.|.|-+=-.-++|-.||+.+....+.
T Consensus 68 v~~~KVdvDe~------------------~~la~~ygV~siPTlilFkdG~~v~~~vG~~~k~~l~~~l~~ 120 (137)
T 2qsi_A 68 LVAAEVAAEAE------------------RGLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGA 120 (137)
T ss_dssp EEEEEECGGGH------------------HHHHHHHTCCSSSEEEEEECCEEEEEEESCCCHHHHHHHHHH
T ss_pred cEEEEEECCCC------------------HHHHHHcCCccCCEEEEEECCEEEEEEeCCCCHHHHHHHHHH
Confidence 46888877654 689999999888888889888888899999999987776654
No 25
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=21.24 E-value=2.4e+02 Score=20.45 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=37.9
Q ss_pred cceEEEEEcCcc---cceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCC
Q 027578 127 VAFVKVSMDGAP---YLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGD 179 (221)
Q Consensus 127 ~~~vKV~MdG~~---igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD 179 (221)
..+|+|+.--.. .--.+++.....-.+|...|+..+++....-+|.|.+++|.
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~ 67 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGS 67 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSC
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCc
Confidence 456666554211 12335556678999999999999999888889999887554
No 26
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=20.99 E-value=63 Score=20.38 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhccCCCceEeEEecCCC-CeEEecCCC
Q 027578 151 YQELSDALGKMFSSFTIDYVPTYEDKDG-DWMLVGDVP 187 (221)
Q Consensus 151 Y~eL~~~L~~MF~~~~~~~~l~YeD~eG-D~mLVGDvP 187 (221)
|..|.+.|.+.|+.......+.+.|.+. +|.. |..+
T Consensus 20 ~~~i~~~l~~~lg~~~~~v~V~i~e~~~~~w~~-gG~~ 56 (61)
T 2opa_A 20 VEKVTEAVKETTGASEEKIVVFIEEMRKDHYAV-AGKR 56 (61)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEE-TTEE
T ss_pred HHHHHHHHHHHhCcCcCeEEEEEEEcCHHHeeE-CCEE
Confidence 6677777788788765555555666654 5554 4443
No 27
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=20.78 E-value=1.7e+02 Score=18.66 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=32.1
Q ss_pred EEEEE-cCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEe
Q 027578 130 VKVSM-DGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYE 174 (221)
Q Consensus 130 vKV~M-dG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~Ye 174 (221)
+.|.. +|..+ .+++.....-.+|...++..+++....-.+.|.
T Consensus 3 i~vk~~~g~~~--~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 3 IKVKTLTGKEI--EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp EEEECTTSCEE--EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEECCCCCEE--EEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 44443 56544 466677788999999999999987667888884
No 28
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=20.62 E-value=82 Score=25.45 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=35.9
Q ss_pred CcceEEEEEcCc--ccceeeccCCcCCHHHHHHHHHhhhccC
Q 027578 126 NVAFVKVSMDGA--PYLRKVDLKLYKSYQELSDALGKMFSSF 165 (221)
Q Consensus 126 ~~~~vKV~MdG~--~igRkvDL~~~~sY~eL~~~L~~MF~~~ 165 (221)
....+||..+|. +|=|.|.+..--+..+|...|...|+-.
T Consensus 7 ~iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw~ 48 (188)
T 2i1s_A 7 KVYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWE 48 (188)
T ss_dssp EEEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTCC
T ss_pred cEEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 356789999986 7999999999999999999999999954
No 29
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=20.53 E-value=46 Score=20.84 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhhccCCCceEeEEecCC-CCeEEec
Q 027578 151 YQELSDALGKMFSSFTIDYVPTYEDKD-GDWMLVG 184 (221)
Q Consensus 151 Y~eL~~~L~~MF~~~~~~~~l~YeD~e-GD~mLVG 184 (221)
.+.|.++|.+.|+.......+.++|.+ ++|..-|
T Consensus 23 ~~~l~~~l~~~lg~p~~~v~v~i~e~~~~~~~~~G 57 (63)
T 2x4k_A 23 VSEVTDAVEKTTGANRQAIHVVIEEMKPNHYGVAG 57 (63)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETT
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECC
Confidence 456777788888876555555555555 5554443
No 30
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=20.02 E-value=1e+02 Score=28.18 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=28.8
Q ss_pred CcCCHHHHHHHHHhh--------hcc-CCC--ceEeEEecCCCCeEEe
Q 027578 147 LYKSYQELSDALGKM--------FSS-FTI--DYVPTYEDKDGDWMLV 183 (221)
Q Consensus 147 ~~~sY~eL~~~L~~M--------F~~-~~~--~~~l~YeD~eGD~mLV 183 (221)
+|-+|+|..+.|++- |.. ++. .|.|.|.+.||+.++.
T Consensus 248 aFlTydEv~~~L~~~~~kpGsYIfR~ScTrlGqwAIgyV~~~~~I~qt 295 (329)
T 3bux_B 248 AFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQT 295 (329)
T ss_dssp TTCCHHHHHHHHGGGTTSTTEEEEEECSSSTTSEEEEEECTTSCEEEE
T ss_pred heeeHHHHHHHHHHhcCCCCcEEEEeccCccCceEEEEECCCCceeee
Confidence 378899999999982 221 122 8999999999999875
Done!