BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027581
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6IRQ7|RL4_RHOCS 50S ribosomal protein L4 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rplD PE=3 SV=1
Length = 206
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 59/77 (76%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N NE G + LA +VF +P R+DI+ R+V WQLAKR+QGTH TK ISE++GT KKPW
Sbjct: 5 VKNLNNETVGEIELADEVFGLPTRQDILTRMVLWQLAKRRQGTHKTKGISEIAGTTKKPW 64
Query: 163 RQKGTGRARHGTLRGPQ 179
RQKGTGRAR G+ R PQ
Sbjct: 65 RQKGTGRARQGSTRSPQ 81
>sp|Q2W2J2|RL4_MAGSA 50S ribosomal protein L4 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplD PE=3 SV=1
Length = 206
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 55/77 (71%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + LA ++F VP+R DI+ R V WQLAKRQ G H TKTISE+SGT KKP+
Sbjct: 5 VISLDNQTVGEIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQ 179
QKG GRAR G+LR Q
Sbjct: 65 AQKGGGRARQGSLRSAQ 81
>sp|Q2RQW1|RL4_RHORT 50S ribosomal protein L4 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplD PE=3 SV=1
Length = 206
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 56/77 (72%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ VF +P+R D++HR+VRWQLA+RQ GTH TK ISE+SGT KP+
Sbjct: 5 VKTLDGKDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTTAKPF 64
Query: 163 RQKGTGRARHGTLRGPQ 179
+QKGTG AR G+ R PQ
Sbjct: 65 KQKGTGHARQGSKRSPQ 81
>sp|Q5PA59|RL4_ANAMM 50S ribosomal protein L4 OS=Anaplasma marginale (strain St. Maries)
GN=rplD PE=3 SV=1
Length = 208
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 57/79 (72%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE G + L+ +VF V +R+D++ VV WQLAKR+ GTH T+ IS+VSGT K
Sbjct: 3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQ 179
P+RQK TGRAR G+LR PQ
Sbjct: 63 PYRQKHTGRARQGSLRSPQ 81
>sp|B9KJ69|RL4_ANAMF 50S ribosomal protein L4 OS=Anaplasma marginale (strain Florida)
GN=rplD PE=3 SV=1
Length = 208
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 57/79 (72%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE G + L+ +VF V +R+D++ VV WQLAKR+ GTH T+ IS+VSGT K
Sbjct: 3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQ 179
P+RQK TGRAR G+LR PQ
Sbjct: 63 PYRQKHTGRARQGSLRSPQ 81
>sp|Q11HQ3|RL4_MESSB 50S ribosomal protein L4 OS=Mesorhizobium sp. (strain BNC1) GN=rplD
PE=3 SV=1
Length = 206
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT +D G + ++ ++F + R+DI+HRVVRWQLAKRQQGTH K +E++ TG K
Sbjct: 3 LKVTTLAGKDAGKVEVSDEIFGLDPREDILHRVVRWQLAKRQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQGWYYNARSKAQKPC 193
+RQKGTGRARH + R PQ + KA P
Sbjct: 63 MYRQKGTGRARHSSARAPQ---FRGGGKAHGPV 92
>sp|A0PXU7|RL4_CLONN 50S ribosomal protein L4 OS=Clostridium novyi (strain NT) GN=rplD
PE=3 SV=1
Length = 206
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 4/95 (4%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N + G + LA VF V + +D++H+VV QLA ++QG S KT +EVSG
Sbjct: 1 MPTVDLYNIEGQKVGDLQLAETVFAVEVNEDVLHQVVVAQLANKRQGNQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQGWYYNARSKAQKP 192
GKKPWRQKGTGRAR G++R PQ W + A KP
Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQ-WIHGGVVFAPKP 94
>sp|P61061|RL4_BDEBA 50S ribosomal protein L4 OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=rplD PE=3 SV=1
Length = 209
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 56/76 (73%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N+ E G + LA DVF+ P++K+++H VV+WQLA R+QGTH TKT VSG GKK
Sbjct: 4 VNVLNWKKEKVGSVELAADVFETPVKKEVLHTVVQWQLAARRQGTHMTKTKGLVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLR 176
P++QKGTG AR G+ R
Sbjct: 64 PFKQKGTGGARQGSSR 79
>sp|B1I1I9|RL4_DESAP 50S ribosomal protein L4 OS=Desulforudis audaxviator (strain
MP104C) GN=rplD PE=3 SV=1
Length = 207
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN + G + L+ VF P+ ++H VV QLA R+QGTH TKT SEV G
Sbjct: 1 MPTAAVFNIEGQQVGEIELSEAVFGQPVNDAVLHEVVVMQLANRRQGTHDTKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGP 178
G+KPWRQKGTGRARHGT+R P
Sbjct: 61 GRKPWRQKGTGRARHGTIRSP 81
>sp|Q8UE19|RL4_AGRT5 50S ribosomal protein L4 OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=rplD PE=3 SV=1
Length = 206
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 3/95 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH TK SEVS TG K
Sbjct: 3 LNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQGWYYNARSKAQKPCYK 195
++QKGTGRARH + R PQ + KA P +
Sbjct: 63 MYKQKGTGRARHHSARAPQ---FRGGGKAHGPVVR 94
>sp|Q890P0|RL4_CLOTE 50S ribosomal protein L4 OS=Clostridium tetani (strain
Massachusetts / E88) GN=rplD PE=3 SV=1
Length = 206
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 4/95 (4%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G L+ VF V + K+++H+V+ QLA ++QGT S+KT +EVSG
Sbjct: 1 MPTVGLFNKEGQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQGWYYNARSKAQKP 192
G+KPWRQKGTGRAR G++R PQ W A KP
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQ-WIKGGVVFAPKP 94
>sp|Q5Z1W2|RL4_NOCFA 50S ribosomal protein L4 OS=Nocardia farcinica (strain IFM 10152)
GN=rplD PE=3 SV=1
Length = 230
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 56/82 (68%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+LV+PV + G + L ++FDV ++H+VV QLA +QGTH+TKT EVSG
Sbjct: 15 NLVLPVKEAGGKSNGTVELPAEIFDVTANIALMHQVVTAQLAAARQGTHATKTRGEVSGG 74
Query: 158 GKKPWRQKGTGRARHGTLRGPQ 179
GKKP+RQKGTGRAR G+ R PQ
Sbjct: 75 GKKPYRQKGTGRARQGSTRAPQ 96
>sp|B9JVN8|RL4_AGRVS 50S ribosomal protein L4 OS=Agrobacterium vitis (strain S4 / ATCC
BAA-846) GN=rplD PE=3 SV=1
Length = 206
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V D G + L+ +F + R+DII R+VRWQLAK+QQGTH TKT +EVS TG K
Sbjct: 3 LNVKTLEGTDAGTVSLSDAIFGLEPRQDIIARMVRWQLAKKQQGTHKTKTRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQGWYYNARSKAQKPCYK 195
++QKGTGRARH + R PQ + KA P +
Sbjct: 63 MYKQKGTGRARHHSARAPQ---FRGGGKAHGPVVR 94
>sp|A9H3R2|RL4_GLUDA 50S ribosomal protein L4 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rplD PE=3 SV=1
Length = 204
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 51/77 (66%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G VL ++F V R DI+ RVV WQLAKR+ GTH K + EVSGT KKP+
Sbjct: 5 IKTLDNGSAGTAVLPDEIFGVTPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQ 179
RQKGTG AR G+LR PQ
Sbjct: 65 RQKGTGSARQGSLRAPQ 81
>sp|Q1RHM2|RL4_RICBR 50S ribosomal protein L4 OS=Rickettsia bellii (strain RML369-C)
GN=rplD PE=3 SV=1
Length = 207
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ N NE+ G + L D+F V IR DII +VV WQ AK GTH TKT+SEVSGT KKP
Sbjct: 5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQ 179
++QKGTG AR G+LR Q
Sbjct: 65 FKQKGTGNARQGSLRSVQ 82
>sp|A8GVB5|RL4_RICB8 50S ribosomal protein L4 OS=Rickettsia bellii (strain OSU 85-389)
GN=rplD PE=3 SV=1
Length = 207
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ N NE+ G + L D+F V IR DII +VV WQ AK GTH TKT+SEVSGT KKP
Sbjct: 5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQ 179
++QKGTG AR G+LR Q
Sbjct: 65 FKQKGTGNARQGSLRSVQ 82
>sp|Q92QG9|RL4_RHIME 50S ribosomal protein L4 OS=Rhizobium meliloti (strain 1021)
GN=rplD PE=3 SV=1
Length = 206
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH +K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKSKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQGWYYNARSKAQKPCYK 195
++QKGTGRARH + R PQ + KA P +
Sbjct: 63 MYKQKGTGRARHHSARAPQ---FRGGGKAHGPVVR 94
>sp|Q8R7V5|RL4_THETN 50S ribosomal protein L4 OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=rplD PE=3 SV=1
Length = 206
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 53/79 (67%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N E G + L VF VP+ ++H+ V LA ++QGTHSTKT EV G G+K
Sbjct: 4 VPVYNVKGEQVGEIELKDSVFGVPVNVAVMHQAVVNYLANQRQGTHSTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQ 179
PWRQKGTGRAR G++R PQ
Sbjct: 64 PWRQKGTGRARQGSIRAPQ 82
>sp|A6U860|RL4_SINMW 50S ribosomal protein L4 OS=Sinorhizobium medicae (strain WSM419)
GN=rplD PE=3 SV=1
Length = 206
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQGWYYNARSKAQKPCYK 195
++QKGTGRARH + R PQ + KA P +
Sbjct: 63 MYKQKGTGRARHHSARAPQ---FRGGGKAHGPVVR 94
>sp|A9IW26|RL4_BART1 50S ribosomal protein L4 OS=Bartonella tribocorum (strain CIP
105476 / IBS 506) GN=rplD PE=3 SV=1
Length = 206
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 64/98 (65%), Gaps = 5/98 (5%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +FD+ R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GHEAGKLKVSESIFDLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQGWYYNARSKAQKPCYK 195
G K ++QKGTGRARH + R PQ + KA P ++
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQ---FRGGGKAHGPVFR 94
>sp|Q5FTY4|RL4_GLUOX 50S ribosomal protein L4 OS=Gluconobacter oxydans (strain 621H)
GN=rplD PE=3 SV=1
Length = 204
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 52/77 (67%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G + L ++F V R DI+ RVV WQLAKR+ GTH TK + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGSVALPEEIFAVTPRSDIMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQ 179
RQKGTG AR G+LR PQ
Sbjct: 65 RQKGTGSARQGSLRAPQ 81
>sp|Q98N56|RL4_RHILO 50S ribosomal protein L4 OS=Rhizobium loti (strain MAFF303099)
GN=rplD PE=3 SV=1
Length = 206
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 61/95 (64%), Gaps = 3/95 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ ++F + R+DI+ RVVRWQLAK+QQGTH K +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQGWYYNARSKAQKPCYK 195
++QKGTGRARH + R PQ + KA P +
Sbjct: 63 MYKQKGTGRARHHSARAPQ---FRGGGKAHGPVVR 94
>sp|C3MAY1|RL4_RHISN 50S ribosomal protein L4 OS=Rhizobium sp. (strain NGR234) GN=rplD
PE=3 SV=1
Length = 206
Score = 87.0 bits (214), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EV+ TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQGWYYNARSKAQKPCYK 195
++QKGTGRARH + R PQ + KA P +
Sbjct: 63 MYKQKGTGRARHHSARAPQ---FRGGGKAHGPVVR 94
>sp|Q2GED8|RL4_NEOSM 50S ribosomal protein L4 OS=Neorickettsia sennetsu (strain
Miyayama) GN=rplD PE=3 SV=1
Length = 214
Score = 87.0 bits (214), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 52/76 (68%), Gaps = 6/76 (7%)
Query: 110 DKGFMVLAGDV------FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
D G LAG V + P R D++ V+ WQLAKR+ GTH TK ISEVSGT +KP+R
Sbjct: 10 DFGASSLAGSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTTRKPYR 69
Query: 164 QKGTGRARHGTLRGPQ 179
QKGTGRAR G+LR PQ
Sbjct: 70 QKGTGRARQGSLRAPQ 85
>sp|Q6A6M7|RL4_PROAC 50S ribosomal protein L4 OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=rplD PE=3 SV=1
Length = 301
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 56/85 (65%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+++ I V + + G L GD+FDV +IH+VV QLA +QGTH+TKT +V
Sbjct: 1 MNETKTIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQ 179
SG GKKPWRQKGTGRAR G+ R PQ
Sbjct: 61 SGGGKKPWRQKGTGRARQGSTRAPQ 85
>sp|Q2JFH5|RL4_FRASC 50S ribosomal protein L4 OS=Frankia sp. (strain CcI3) GN=rplD PE=3
SV=1
Length = 245
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 51/70 (72%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L G VFDVP+ +IH+VV QLA +QGTH TKT EV G G+KP+RQKGTGR
Sbjct: 25 EGGSVELPGGVFDVPLNIPLIHQVVVAQLAAARQGTHDTKTRGEVRGGGRKPYRQKGTGR 84
Query: 170 ARHGTLRGPQ 179
AR G+LR PQ
Sbjct: 85 ARQGSLRAPQ 94
>sp|Q2GL58|RL4_ANAPZ 50S ribosomal protein L4 OS=Anaplasma phagocytophilum (strain HZ)
GN=rplD PE=3 SV=1
Length = 208
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 53/79 (67%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N NE G + L VF + R+D++ VV WQLAKR+ GTH K IS++SGT K
Sbjct: 3 VNIVNIANEVVGSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQ 179
P+RQK TGRAR G+LR PQ
Sbjct: 63 PYRQKHTGRARQGSLRSPQ 81
>sp|A3DJH3|RL4_CLOTH 50S ribosomal protein L4 OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=rplD PE=3 SV=1
Length = 208
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 50/68 (73%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + + K IH+V+ QLA R+QGT STKT SEV G G+KPWRQKGTGRAR
Sbjct: 15 GEINLRDDIFGIEVNKHAIHQVIVNQLANRRQGTQSTKTKSEVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQ 179
HG++R Q
Sbjct: 75 HGSIRSAQ 82
>sp|B8I7Y0|RL4_CLOCE 50S ribosomal protein L4 OS=Clostridium cellulolyticum (strain ATCC
35319 / DSM 5812 / JCM 6584 / H10) GN=rplD PE=3 SV=1
Length = 207
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N E G + L+ +VF + KD +H VV QLA R+QGT STKT SEV G
Sbjct: 1 MPKVDLYNMKGEVVGDIQLSDNVFGTDVNKDALHAVVVNQLANRRQGTQSTKTKSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQ 179
GKKPWRQKGTGRAR G++R Q
Sbjct: 61 GKKPWRQKGTGRARQGSIRSAQ 82
>sp|Q2K9L5|RL4_RHIEC 50S ribosomal protein L4 OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=rplD PE=3 SV=1
Length = 206
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQGWYYNARSKAQKPCYK 195
K ++QKGTGRARH + R PQ + KA P +
Sbjct: 61 AKMYKQKGTGRARHHSARAPQ---FRGGGKAHGPVVR 94
>sp|P61067|RL4_ONYPE 50S ribosomal protein L4 OS=Onion yellows phytoplasma (strain OY-M)
GN=rplD PE=3 SV=1
Length = 207
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 3/81 (3%)
Query: 101 IPVTNFFNEDKGFM---VLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N N+ F+ VLA VFD+ + +++ VV Q A +QGTH+TKT + V+G
Sbjct: 1 MPKINILNQQGDFVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGP 178
GKKPWRQKGTGRARHG++R P
Sbjct: 61 GKKPWRQKGTGRARHGSIRSP 81
>sp|Q68W79|RL4_RICTY 50S ribosomal protein L4 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rplD PE=3 SV=1
Length = 207
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQ----GWYY--NARSKAQKPCYKVEQEGAA-AWVEDCS 209
++QKGTG AR G+LR Q G + RS A K KV + G A E C+
Sbjct: 65 FKQKGTGNARQGSLRSIQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKCA 119
>sp|A0LIJ1|RL4_SYNFM 50S ribosomal protein L4 OS=Syntrophobacter fumaroxidans (strain
DSM 10017 / MPOB) GN=rplD PE=3 SV=1
Length = 207
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN ++ G + L+ VF VP+R ++H VV +QLAKR+ GT TK S+V+G
Sbjct: 1 MPTVDIFNTNRDVVGQLELSDAVFAVPLRPHVLHEVVLYQLAKRRAGTVKTKGRSDVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGP 178
GKKPWRQKGTGRAR GT R P
Sbjct: 61 GKKPWRQKGTGRARAGTSRSP 81
>sp|C6C186|RL4_DESAD 50S ribosomal protein L4 OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplD PE=3
SV=1
Length = 206
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 55/78 (70%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + + ++ G M LA +VF+VP++ +I+H VVR QLA ++QGTH+TKT G G K
Sbjct: 4 ITIYDQTKKEVGSMDLAPEVFEVPVKPEILHLVVRSQLAAKRQGTHATKTRGMKRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGP 178
PWRQKGTGRAR G+ R P
Sbjct: 64 PWRQKGTGRARAGSTRSP 81
>sp|B3PWS2|RL4_RHIE6 50S ribosomal protein L4 OS=Rhizobium etli (strain CIAT 652)
GN=rplD PE=3 SV=1
Length = 206
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQGWYYNARSKAQKPCYK 195
K ++QKGTGRARH + R PQ + KA P +
Sbjct: 61 AKMYKQKGTGRARHHSARAPQ---FRGGGKAHGPVVR 94
>sp|B5ZYT6|RL4_RHILW 50S ribosomal protein L4 OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=rplD PE=3 SV=1
Length = 206
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQGWYYNARSKAQKPCYK 195
+QKGTGRARH + R PQ + KA P +
Sbjct: 65 KQKGTGRARHHSARAPQ---FRGGGKAHGPVVR 94
>sp|A7GJ73|RL4_CLOBL 50S ribosomal protein L4 OS=Clostridium botulinum (strain Langeland
/ NCTC 10281 / Type F) GN=rplD PE=3 SV=1
Length = 206
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQGWYYNARSKAQKP 192
G KPWRQKGTGRAR G++R PQ W + A KP
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQ-WIHGGVVFAPKP 94
>sp|C1FMV0|RL4_CLOBJ 50S ribosomal protein L4 OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=rplD PE=3 SV=1
Length = 206
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQGWYYNARSKAQKP 192
G KPWRQKGTGRAR G++R PQ W + A KP
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQ-WIHGGVVFAPKP 94
>sp|A5I7K5|RL4_CLOBH 50S ribosomal protein L4 OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=rplD PE=3 SV=1
Length = 206
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQGWYYNARSKAQKP 192
G KPWRQKGTGRAR G++R PQ W + A KP
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQ-WIHGGVVFAPKP 94
>sp|A7FZ68|RL4_CLOB1 50S ribosomal protein L4 OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=rplD PE=3 SV=1
Length = 206
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQGWYYNARSKAQKP 192
G KPWRQKGTGRAR G++R PQ W + A KP
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQ-WIHGGVVFAPKP 94
>sp|Q1MIE0|RL4_RHIL3 50S ribosomal protein L4 OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=rplD PE=3 SV=1
Length = 206
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQGWYYNARSKAQKPCYK 195
+QKGTGRARH + R PQ + KA P +
Sbjct: 65 KQKGTGRARHHSARAPQ---FRGGGKAHGPVVR 94
>sp|Q3A9R7|RL4_CARHZ 50S ribosomal protein L4 OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=rplD PE=3 SV=1
Length = 206
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 52/78 (66%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N G + L ++F P+ K +++ V LA +++GTH TKT EVSG G+K
Sbjct: 4 VPVYNMEGAQVGEIELKDEIFGAPVNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGP 178
PWRQKGTGRARHG++R P
Sbjct: 64 PWRQKGTGRARHGSIRSP 81
>sp|B0K5P4|RL4_THEPX 50S ribosomal protein L4 OS=Thermoanaerobacter sp. (strain X514)
GN=rplD PE=3 SV=1
Length = 206
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 51/79 (64%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L VF VP+ ++H V LA ++QGTHSTKT EV G G+K
Sbjct: 4 VAVYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQ 179
PWRQKGTGRAR G++R PQ
Sbjct: 64 PWRQKGTGRARQGSIRAPQ 82
>sp|B0KCK1|RL4_THEP3 50S ribosomal protein L4 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=rplD PE=3 SV=1
Length = 206
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 51/79 (64%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L VF VP+ ++H V LA ++QGTHSTKT EV G G+K
Sbjct: 4 VAVYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQ 179
PWRQKGTGRAR G++R PQ
Sbjct: 64 PWRQKGTGRARQGSIRAPQ 82
>sp|C3KVQ0|RL4_CLOB6 50S ribosomal protein L4 OS=Clostridium botulinum (strain 657 /
Type Ba4) GN=rplD PE=3 SV=1
Length = 206
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQGWYYNARSKAQKP 192
G KPWRQKGTGRAR G++R PQ W + A KP
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQ-WIHGGIVFAPKP 94
>sp|Q4UMS8|RL4_RICFE 50S ribosomal protein L4 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rplD PE=3 SV=1
Length = 207
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQ 179
++QKGTG AR G+LR Q
Sbjct: 65 FKQKGTGNARQGSLRSVQ 82
>sp|Q1BDA6|RL4_MYCSS 50S ribosomal protein L4 OS=Mycobacterium sp. (strain MCS) GN=rplD
PE=3 SV=1
Length = 219
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 50/68 (73%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG GKKP+RQKGTGRAR
Sbjct: 16 GSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75
Query: 172 HGTLRGPQ 179
G+ R PQ
Sbjct: 76 QGSTRAPQ 83
>sp|A1UBN7|RL4_MYCSK 50S ribosomal protein L4 OS=Mycobacterium sp. (strain KMS) GN=rplD
PE=3 SV=1
Length = 219
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 50/68 (73%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG GKKP+RQKGTGRAR
Sbjct: 16 GSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75
Query: 172 HGTLRGPQ 179
G+ R PQ
Sbjct: 76 QGSTRAPQ 83
>sp|A3PVC2|RL4_MYCSJ 50S ribosomal protein L4 OS=Mycobacterium sp. (strain JLS) GN=rplD
PE=3 SV=1
Length = 219
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 50/68 (73%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG GKKP+RQKGTGRAR
Sbjct: 16 GSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75
Query: 172 HGTLRGPQ 179
G+ R PQ
Sbjct: 76 QGSTRAPQ 83
>sp|Q5GSU5|RL4_WOLTR 50S ribosomal protein L4 OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=rplD PE=3 SV=1
Length = 204
Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 50/77 (64%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N D G L +F V + I+H +VRWQLAKR+ GTH K IS+VSGT KP+
Sbjct: 5 LVNLSNNDVGTTQLNPLIFSVEQKLSILHDIVRWQLAKRRAGTHKVKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQ 179
QK TGRAR G+LR PQ
Sbjct: 65 SQKRTGRARQGSLRSPQ 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,646,381
Number of Sequences: 539616
Number of extensions: 3462561
Number of successful extensions: 7822
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7037
Number of HSP's gapped (non-prelim): 784
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)