BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027582
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 251 bits (642), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 152/216 (70%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA + ++CLIPCA
Sbjct: 251 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 310
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+
Sbjct: 311 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 370
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 371 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 430
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 431 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 251 bits (642), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 152/216 (70%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA + ++CLIPCA
Sbjct: 170 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 229
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+
Sbjct: 230 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 289
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 290 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 349
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 350 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 385
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 251 bits (641), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 152/216 (70%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA + ++CLIPCA
Sbjct: 158 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 217
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+
Sbjct: 218 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 277
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 278 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 337
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 338 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 373
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 251 bits (641), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 152/216 (70%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA + ++CLIPCA
Sbjct: 158 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 217
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+
Sbjct: 218 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 277
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 278 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 337
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 338 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 373
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 251 bits (641), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 152/216 (70%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA + ++CLIPCA
Sbjct: 158 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 217
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+
Sbjct: 218 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 277
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 278 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 337
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 338 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 373
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 242 bits (617), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 148/216 (68%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA + ++CLIPCA
Sbjct: 251 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 310
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
IDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+
Sbjct: 311 IDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKT 370
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G LTGE+
Sbjct: 371 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGEL 430
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ L +VL L+ HQ R VTDE+V F R L
Sbjct: 431 KKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 466
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 241 bits (616), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 148/216 (68%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA + ++CLIPCA
Sbjct: 251 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 310
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
IDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+
Sbjct: 311 IDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKT 370
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G LTGE+
Sbjct: 371 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGEL 430
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ L +VL L+ HQ R VTDE+V F R L
Sbjct: 431 KKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 466
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 241 bits (615), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 148/216 (68%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA + ++CLIPCA
Sbjct: 204 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 263
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
IDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+
Sbjct: 264 IDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKT 323
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G LTGE+
Sbjct: 324 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGEL 383
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ L +VL L+ HQ R VTDE+V F R L
Sbjct: 384 KKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 419
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 134/210 (63%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
++++ K ++ +++ IFGF ++GK +FP VQA G+ + CL+P A
Sbjct: 168 ILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHA 227
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
IDQDPYFRM RDVAPR+GY KP+ I S F P+LQG KMSAS NS+I+V D+
Sbjct: 228 IDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRN 287
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
YAFSGGQ + E R+LGANL+VD+ +YL F +EDD +LE I K+Y +G ML+GE+
Sbjct: 288 KIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEI 347
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAF 210
K L + L +L + HQ R A+ D+++ F
Sbjct: 348 KSILVQELVKLTKNHQKNREAINDDVIAKF 377
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
pdb|3I05|B Chain B, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
Length = 395
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 134/215 (62%), Gaps = 2/215 (0%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXX-GKDHLRCLIPC 59
+ K+ + T ++V G FGF ED+ G+ FP +QA ++ CLIP
Sbjct: 171 VAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQ 230
Query: 60 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXX 119
AIDQDPYFR+TRD+APR+GY KPA+I S FFP L G GKMS+S +A+ +TD+
Sbjct: 231 AIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSS-GTAVLLTDTEKMVK 289
Query: 120 XXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGE 179
+AFSGG + + H LGAN+EVD+P+++LSFFLEDD EL +KKEY G ++TGE
Sbjct: 290 DKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGE 349
Query: 180 VKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 214
VK+ L +T + + HQ R VTDE V F + R
Sbjct: 350 VKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTR 384
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet
pdb|3KT3|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT6|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT8|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
Length = 438
Score = 189 bits (480), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 130/216 (60%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
+V+V++ +T + +FGF D IGK F +Q D CLIPCA
Sbjct: 197 VVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCA 256
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
IDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+
Sbjct: 257 IDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQK 316
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
YAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y +G +L+GE+
Sbjct: 317 KINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEM 376
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ + L E V+ Q RA V +E +D FM L
Sbjct: 377 KKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl
Trna Synthetase
Length = 432
Score = 189 bits (480), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 130/216 (60%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
+V+V++ +T + +FGF D IGK F +Q D CLIPCA
Sbjct: 197 VVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCA 256
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
IDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+
Sbjct: 257 IDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQK 316
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
YAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y +G +L+GE+
Sbjct: 317 KINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEM 376
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ + L E V+ Q RA V +E +D FM L
Sbjct: 377 KKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
pdb|3TZE|B Chain B, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
Length = 406
Score = 167 bits (423), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 128/213 (60%), Gaps = 3/213 (1%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCA 60
++K++K + N+ + +FGF +IG+V FP + G CL+P A
Sbjct: 194 ILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAA 250
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXX 120
+DQDP+FR+ RD A +G KP+ I S P L+G KMSASDPNS+IY+ D+
Sbjct: 251 VDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRK 310
Query: 121 XXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE + Y G + + E+
Sbjct: 311 KIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEM 370
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 213
K++ V+ E V R+Q +R VTD+ + AF+ +
Sbjct: 371 KEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDI 403
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 105/162 (64%)
Query: 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 114
CLI I+QDPYFR+ RD+APR+G+ K A + F P LQG KMSASDPNSAIY+TD+
Sbjct: 289 CLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDT 348
Query: 115 XXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGG 174
YAFSGG+++ E HR GA+L VD+ V+YL F++DDAELE +K +Y G
Sbjct: 349 PAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGK 408
Query: 175 MLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
+LTGEVK L +L L++ H R V M+++F + L
Sbjct: 409 LLTGEVKATLIGILQGLIKEHAERRDKVDTTMIESFTVKKEL 450
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 130 bits (326), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 111/210 (52%), Gaps = 12/210 (5%)
Query: 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAI 61
+ +AK + ++ +FGFT + IG + FP +Q + RCLIP AI
Sbjct: 166 IPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFF----------ERKRCLIPAAI 215
Query: 62 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXX 121
DQDPY+R+ RD A +GY+K A + S F P+L +GKMSAS P +AIY+TDS
Sbjct: 216 DQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKK 275
Query: 122 XXXYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEV 180
+ +GG+ +++ R+ G E + K+L FF EDD +L+ G + GE
Sbjct: 276 VWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGEC 335
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAF 210
K+ L + E ++ HQ R +++V+ F
Sbjct: 336 KRYLISKIQEFLKEHQRRRKKA-EKLVEKF 364
>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|B Chain B, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|C Chain C, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|D Chain D, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|E Chain E, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|F Chain F, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
Length = 386
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 3/209 (1%)
Query: 4 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQ 63
V K YN V F F D+IGK++ P + RCL+ +I
Sbjct: 177 VEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKN 234
Query: 64 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXX 123
+ + +A + + +P ++ P L G T SD NS I ++D+
Sbjct: 235 VQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNS-ILLSDNAKQVERKIN 293
Query: 124 XYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 183
AFSGG+ + E H+KLG ++D+ + L+ F D+A+++ ++++Y G +L+GE+K+
Sbjct: 294 KLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKI 353
Query: 184 LAKVLTELVERHQVARAAVTDEMVDAFMA 212
++ + + + + + +T + A+++
Sbjct: 354 VSASMKDFIVAYDAKKKPITTAYLKAYIS 382
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 10/147 (6%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIG----YHKPALIESSFFPALQGETGKMSASDPNSAIYV 111
++P DQDP+ R+TRD+A R+ +PA P L G KMS+S P+S I++
Sbjct: 211 VVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGR--KMSSSRPDSTIFL 268
Query: 112 TDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFF--LEDDAELEHIKKE 169
TD A +GG+ + E R+LG EV V ++ + + DD E++HI
Sbjct: 269 TDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEV-CSVYHMDLYHLMPDDGEVKHIYTS 326
Query: 170 YGAGGMLTGEVKQRLAKVLTELVERHQ 196
G +L GE KQ + L + HQ
Sbjct: 327 CRLGKILCGECKQIAWEKLERFLAEHQ 353
>pdb|2DLC|X Chain X, Crystal Structure Of The Ternary Complex Of Yeast
Tyrosyl-Trna Synthetase
Length = 394
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 60 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 109
+DQ F + + P +GY K A + + P L + GKMSASDPNS I
Sbjct: 189 GVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGL-AQGGKMSASDPNSKI 237
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 112
++P DQ + +TRD+A R + E+ +L T KMS SDPN Y+T
Sbjct: 128 IVPVGEDQKQHIELTRDLAERFNKRYFTIPEARRIMSLVDPTKKMSKSDPNPKAYIT 184
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 26/156 (16%)
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------------ETGKMSASDP 105
+DQ + RDVA ++G KP I + +LQG KMS S P
Sbjct: 185 MDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244
Query: 106 NSAIYVTDSXXXXXXXXXXYAFSG----GQESVELHRKL-----GANLEVDIPVKYLSFF 156
+A++V DS G +E+ R + G L VD P KY
Sbjct: 245 ETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPV 304
Query: 157 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 192
+ E ++++Y G + ++K +A+ L E+V
Sbjct: 305 --EYTSYEELERDYTDGRLHPLDLKNAVAESLIEVV 338
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 6 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDP 65
+C+ Y +G + G +++PP+ A ++P DQ
Sbjct: 89 QCIVY---IGELERMTQVSAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQ 134
Query: 66 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 112
+ +TRD+A R ++K +L T KMS SDPN Y+T
Sbjct: 135 HIELTRDLAER--FNKRYFTIPERIMSLVDPTKKMSKSDPNPKAYIT 179
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 63/154 (40%), Gaps = 14/154 (9%)
Query: 55 CLIPCAIDQDPYFRMTRDVAPRI-GYHKPALIES----SFFPALQGETG--KMSASDPNS 107
L+P DQ P TR++ R + P L E S P L G G KMS S N
Sbjct: 164 TLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGN- 222
Query: 108 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDAELEHI 166
AI + DS G ++ N PV +L F D A ++ +
Sbjct: 223 AIALGDSADEVARKVMGMYTDPGHLRASDPGRVEGN-----PVFTFLDAFDPDPARVQAL 277
Query: 167 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 200
K +Y AGG+ +VK+ L VL ++ + RA
Sbjct: 278 KDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRA 311
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 63/154 (40%), Gaps = 14/154 (9%)
Query: 55 CLIPCAIDQDPYFRMTRDVAPRI-GYHKPALIES----SFFPALQGETG--KMSASDPNS 107
L+P DQ P TR++ R + P L E S P L G G KMS S N
Sbjct: 144 TLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGN- 202
Query: 108 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDAELEHI 166
AI + DS G ++ N PV +L F D A ++ +
Sbjct: 203 AIALGDSADEVARKVMGMYTDPGHLRASDPGRVEGN-----PVFTFLDAFDPDPARVQAL 257
Query: 167 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 200
K +Y AGG+ +VK+ L VL ++ + RA
Sbjct: 258 KDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRA 291
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 20/113 (17%)
Query: 6 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDP 65
+C+ Y +G + G +++PP+ A ++P DQ
Sbjct: 89 QCIVY---IGELERMTQVSAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQ 134
Query: 66 YFRMTRDVAPRIGYHKPALIESSF------FPALQGETGKMSASDPNSAIYVT 112
+ +TRD+A R + E+ +L T KMS SDPN Y+T
Sbjct: 135 HIELTRDLAERFNKRYFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 20/113 (17%)
Query: 6 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDP 65
+C+ Y +G + G +++PP+ A ++P DQ
Sbjct: 89 QCIVY---IGELERMTQVSAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQ 134
Query: 66 YFRMTRDVAPRIGYHKPALIESSF------FPALQGETGKMSASDPNSAIYVT 112
+ +TRD+A R + E+ +L T KMS SDPN Y+T
Sbjct: 135 HIELTRDLAERFNKRYFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 20/113 (17%)
Query: 6 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDP 65
+C+ Y +G + G +++PP+ A ++P DQ
Sbjct: 89 QCIVY---IGELERMTQVSAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQ 134
Query: 66 YFRMTRDVAPRIGYHKPALIESSF------FPALQGETGKMSASDPNSAIYVT 112
+ +TRD+A R + E+ +L T KMS SDPN Y+T
Sbjct: 135 HIELTRDLAERFNKRYFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 16/109 (14%)
Query: 6 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDP 65
+C+ Y +G + G +++PP+ A ++P DQ
Sbjct: 94 QCIVY---IGELERMTQVSAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQ 139
Query: 66 YFRMTRDVAPRIGYHKPALIES--SFFPALQGETGKMSASDPNSAIYVT 112
+ +TRD+A R A I + +L T KMS SDPN Y+T
Sbjct: 140 HIELTRDLAERFFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 188
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 61 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDS 114
+DQ + R+ IG KP ++ L+ KMS SDP+SAI++ D+
Sbjct: 191 LDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDT 245
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 106
++P DQ + +TRD+A R Y + I + P +L T KMS SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPN 199
Query: 107 SAIYVT 112
Y+T
Sbjct: 200 PKAYIT 205
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 106
++P DQ + +TRD+A R Y + I + P +L T KMS SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPN 199
Query: 107 SAIYVT 112
Y+T
Sbjct: 200 PKAYIT 205
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 106
++P DQ + +TRD+A R Y + I + P +L T K S SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPN 199
Query: 107 SAIYVT 112
Y+T
Sbjct: 200 PKAYIT 205
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 26 GKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPA 83
G +++PP+ A G D L+P DQ + +TR++A R Y+
Sbjct: 155 GLLTYPPLMAADILLY-------GTD----LVPPGEDQKQHLELTRNLAERFNKKYNDIF 203
Query: 84 LIESSFFP-------ALQGETGKMSASDPNSAIYVT 112
I P +L KMS SDPN Y+T
Sbjct: 204 TIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYIT 239
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 106
++P DQ + +TRD+A R Y + I + P +L T K S SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPN 199
Query: 107 SAIYVT 112
Y+T
Sbjct: 200 PKAYIT 205
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 60 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 106
IDQ + R+ PR+GY P + + L G+ KMS+S N
Sbjct: 177 GIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDGQ--KMSSSKGN 221
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 82 PALIESSFFPALQGETGKMSASDPNSAIYVTDS 114
P ++ P L KMS SD NSAI++ DS
Sbjct: 230 PVILSHGMLPGLLEGQEKMSKSDENSAIFMDDS 262
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 171 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 204
G G ++T E+ + AK+L+E +ER V+ A VT+
Sbjct: 129 GKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN 162
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 30.0 bits (66), Expect = 0.99, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 60 AIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDS 114
+DQ + R+ IG KP ++ L+ K S SDP+SAI+ D+
Sbjct: 190 GLDQRKVNXLAREYCDLIGRKLKPVILSHHXLAGLKQGQAKXSKSDPDSAIFXEDT 245
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 60 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 114
IDQ + + A G P + +L G KMS SDP AI++ D+
Sbjct: 193 GIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 66 YFRMTRDVAPRIG----YHKPALIESSFFPALQG 95
Y R R V P+ G Y+ +LI S+ FP LQG
Sbjct: 268 YRRGVRSVDPKTGKEILYNLESLINSAVFPGLQG 301
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 66 YFRMTRDVAPRIG----YHKPALIESSFFPALQG 95
Y R R V P+ G Y+ +LI S+ FP LQG
Sbjct: 268 YRRGVRSVDPKTGKEILYNLESLINSAVFPGLQG 301
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 66 YFRMTRDVAPRIG----YHKPALIESSFFPALQG 95
Y R R V P+ G Y+ +LI S+ FP LQG
Sbjct: 268 YRRGVRSVDPKTGKEILYNLESLINSAVFPGLQG 301
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 66 YFRMTRDVAPRIG----YHKPALIESSFFPALQG 95
Y R R V P+ G Y+ +LI S+ FP LQG
Sbjct: 255 YRRGVRSVDPKTGKEILYNLESLINSAVFPGLQG 288
>pdb|1SQJ|A Chain A, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
pdb|1SQJ|B Chain B, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
Length = 789
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 72 DVAPRIGYHKPALIESSFFPALQGETG-KMSASDPNSAIYVT 112
D+ PR+G PA + FPA G G + A++PN + +T
Sbjct: 274 DITPRVGNSSPAPYNNQTFPA-GGFCGLSVDATNPNRLVVIT 314
>pdb|2EBS|A Chain A, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
pdb|2EBS|B Chain B, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
Length = 789
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 72 DVAPRIGYHKPALIESSFFPALQGETG-KMSASDPNSAIYVT 112
D+ PR+G PA + FPA G G + A++PN + +T
Sbjct: 274 DITPRVGNSSPAPYNNQTFPA-GGFCGLSVDATNPNRLVVIT 314
>pdb|3G1T|A Chain A, Crystal Structure Of Short Chain Dehydrogenase From
Salmonella Enterica Subsp. Enterica Serovar Typhi Str.
Ct18
Length = 258
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 16/36 (44%)
Query: 71 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 106
R VA RI H P L L GE G MS DP
Sbjct: 82 RQVADRIAAHYPRLDGVLHNAGLLGEIGPMSEQDPQ 117
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 138 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH-- 195
R+LGA+ + +P Y+ E + + + AG GE+ A+V+TE+V
Sbjct: 25 RELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFD 84
Query: 196 ------QVARAAVTDEMVDAFMAVR 214
+ A VT ++ A +AVR
Sbjct: 85 KVPAAIEGCDAVVTTGLLPAAVAVR 109
>pdb|1PN3|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PN3|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PNV|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
pdb|1PNV|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
Length = 404
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 138 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH-- 195
R+LGA+ + +P Y+ E + + + AG GE+ A+V+TE+V
Sbjct: 25 RELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFD 84
Query: 196 ------QVARAAVTDEMVDAFMAVRPL 216
+ A VT ++ A +AVR +
Sbjct: 85 KVPAAIEGCDAVVTTGLLPAAVAVRSM 111
>pdb|3PSI|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(239-1451)
Length = 1219
Score = 27.3 bits (59), Expect = 7.4, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 157 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 204
L+D +LE +KK M G++K R T++ ER+Q RA +TD
Sbjct: 64 LQDIYDLEDLKKNL----MTEGDMKIRK----TDIPERYQELRAGITD 103
>pdb|3PSF|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(236-1259)
Length = 1030
Score = 26.9 bits (58), Expect = 8.6, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 157 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 204
L+D +LE +KK M G++K R T++ ER+Q RA +TD
Sbjct: 67 LQDIYDLEDLKKNL----MTEGDMKIRK----TDIPERYQELRAGITD 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,803,122
Number of Sequences: 62578
Number of extensions: 203262
Number of successful extensions: 597
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 56
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)