BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027582
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus
GN=WARS PE=2 SV=3
Length = 475
Score = 293 bits (750), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 136/216 (62%), Positives = 169/216 (78%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F G+ ++CLIPCA
Sbjct: 255 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFHGQADIQCLIPCA 314
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK
Sbjct: 315 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 374
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 375 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYSSGAMLTGEL 434
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ L VL LV HQ R VTDEMV FM R L
Sbjct: 435 KKELIDVLQPLVAEHQARRKEVTDEMVKEFMTPRQL 470
>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1
SV=2
Length = 471
Score = 290 bits (741), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 133/216 (61%), Positives = 169/216 (78%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCA
Sbjct: 251 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 310
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK
Sbjct: 311 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 370
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 371 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 430
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 431 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466
>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2
SV=2
Length = 472
Score = 290 bits (741), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 133/216 (61%), Positives = 169/216 (78%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCA
Sbjct: 252 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 311
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK
Sbjct: 312 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 371
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 372 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 431
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 432 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 467
>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars
PE=1 SV=2
Length = 481
Score = 289 bits (740), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 137/220 (62%), Positives = 170/220 (77%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP VQA PSF +SFP +F + ++CLIPCA
Sbjct: 255 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCA 314
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK+
Sbjct: 315 IDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKS 374
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
K+NK+AFSGG+++VE HR+ G N EVD+ YL+FFLEDD LE I+K+Y +G MLTGE+
Sbjct: 375 KVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIRKDYTSGAMLTGEL 434
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 220
K+ L VL L+ HQ R AVT+E V FMA R L F
Sbjct: 435 KKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQLSFHF 474
>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1
SV=3
Length = 476
Score = 289 bits (739), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 134/220 (60%), Positives = 170/220 (77%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCA
Sbjct: 256 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDVQCLIPCA 315
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK
Sbjct: 316 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 375
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
K+NK+AFSGG+++VE HR+ G N +VD+ YL+FFLEDD +LE I+++Y +G MLTGE+
Sbjct: 376 KVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRRDYTSGAMLTGEL 435
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 220
K+ L +VL L+ HQ R VTDE+V FM R L F
Sbjct: 436 KKELIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSYDF 475
>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1
SV=2
Length = 481
Score = 288 bits (737), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/220 (61%), Positives = 169/220 (76%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP VQA PSF +SFP +F + ++CLIPCA
Sbjct: 255 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCA 314
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK+
Sbjct: 315 IDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKS 374
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
K+NK+AFSGG+++VE HR+ G N EVD+ YL+FFLEDD LE I+K+Y +G MLTGE+
Sbjct: 375 KVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIRKDYTSGAMLTGEL 434
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 220
K+ L VL L+ HQ R AVT+E V FM R L F
Sbjct: 435 KKTLIDVLQPLIAEHQARRKAVTEETVKEFMTPRQLSFHF 474
>sp|Q55DZ8|SYWC_DICDI Tryptophan--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=trpS PE=3 SV=1
Length = 400
Score = 263 bits (671), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 122/220 (55%), Positives = 160/220 (72%), Gaps = 4/220 (1%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD----HLRCL 56
++K+A+CV N++ IFGF D IGK +FPPVQA P FP SFPH+F D ++RCL
Sbjct: 179 VLKIARCVNLNQIQNIFGFKESDAIGKFTFPPVQAAPCFPDSFPHIFPLNDPEIKNIRCL 238
Query: 57 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 116
IPCAIDQDPYFRMTRD+A RIG+ KPALI S FFPALQG KMSASD NSA+Y++D+
Sbjct: 239 IPCAIDQDPYFRMTRDIAHRIGHQKPALIHSKFFPALQGHNTKMSASDTNSAVYLSDTPD 298
Query: 117 AIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGML 176
+K+KI K+AFSGG + E K GA+L VDI +YL+F LEDD +L+ I Y G M+
Sbjct: 299 QVKDKIKKHAFSGGGATKEEQEKNGADLSVDITYEYLTFMLEDDEQLKDIAHRYSTGKMM 358
Query: 177 TGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
TGE+KQ L ++ +++ RH+ ARA +TDE++ FM++R L
Sbjct: 359 TGEIKQILIDLMNKIIIRHKEARAKITDEVLSTFMSIRKL 398
>sp|Q09692|SYWC_SCHPO Tryptophan--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wrs1 PE=1 SV=1
Length = 395
Score = 242 bits (617), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 112/211 (53%), Positives = 151/211 (71%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+V++AKC+T N+ FGFT D IGK+ F +QA PSF SSFPH+F+G + CLIPCA
Sbjct: 177 VVRIAKCITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSFPHIFNGAKDIPCLIPCA 236
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFR+TRDV+ R+ + KPAL+ S FFPALQG KMSAS +SAI++TD+ IKN
Sbjct: 237 IDQDPYFRLTRDVSGRLKFKKPALLHSRFFPALQGPQSKMSASKDSSAIFMTDTPNKIKN 296
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
KIN++AFSGG ++E+HR+ G N +VD+ +YLSFFL+DD +L+ + Y AG + TGE+
Sbjct: 297 KINRHAFSGGGATIEIHREKGGNPDVDVAYQYLSFFLDDDEKLKQLYNTYKAGTLSTGEM 356
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFM 211
K K+L + V Q AR+ V + +D FM
Sbjct: 357 KGECIKLLQQFVSDFQAARSKVDEATLDMFM 387
>sp|Q12109|SYWC_YEAST Tryptophan--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=WRS1 PE=1 SV=1
Length = 432
Score = 223 bits (568), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 145/211 (68%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+V+V++ +T + +FGF D IGK F +Q +FPSSFP++ D CLIPCA
Sbjct: 197 VVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCA 256
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+ K I+
Sbjct: 257 IDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQK 316
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
KINKYAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y +G +L+GE+
Sbjct: 317 KINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEM 376
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFM 211
K+ + L E V+ Q RA V +E +D FM
Sbjct: 377 KKLCIETLQEFVKAFQERRAQVDEETLDKFM 407
>sp|O96771|SYW_ENCCU Tryptophan--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU11_0530 PE=1 SV=2
Length = 385
Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 140/213 (65%), Gaps = 3/213 (1%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
++K++K + N+ + +FGF +IG+V FP + P F SSF F GK + CL+P A
Sbjct: 173 ILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFR--FIGKGAM-CLVPAA 229
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
+DQDP+FR+ RD A +G KP+ I S P L+G KMSASDPNS+IY+ D+ I+
Sbjct: 230 VDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRK 289
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
KI YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE + Y G + + E+
Sbjct: 290 KIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEM 349
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 213
K++ V+ E V R+Q +R VTD+ + AF+ +
Sbjct: 350 KEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDI 382
>sp|Q4JBG7|SYW_SULAC Tryptophan--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=trpS PE=3 SV=1
Length = 381
Score = 187 bits (475), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 131/210 (62%), Gaps = 12/210 (5%)
Query: 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 61
VK+AK +T+N+V FG +IG + +P +Q VP+ +F + RCLIP I
Sbjct: 167 VKIAKKLTFNEVRATFGLDTSSNIGIIFYPALQIVPT-------MFEKR---RCLIPAGI 216
Query: 62 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 121
DQDPY+R+ RD+A +GY K A I S F P L G GKMS+S P +AIY+TD K ++ K
Sbjct: 217 DQDPYWRLQRDIAESLGYFKAAQIHSKFLPPLTGPEGKMSSSQPETAIYLTDDPKTVERK 276
Query: 122 INKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEV 180
I KYAFSGGQ +VELHRK G N ++D+ ++L F E DD + I+++Y +G MLTGE+
Sbjct: 277 IMKYAFSGGQATVELHRKYGGNPDIDVAFQWLYMFFEPDDQRIRKIEEDYRSGAMLTGEL 336
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAF 210
KQ L L +E H+ R D +V+ F
Sbjct: 337 KQILVDKLNAFLEEHREKREKAKD-LVNVF 365
>sp|Q976M1|SYW_SULTO Tryptophan--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=trpS PE=3 SV=2
Length = 381
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 135/210 (64%), Gaps = 12/210 (5%)
Query: 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 61
+K+AK +T+++V FG +IG + +P +Q P+ +F + RCLIP I
Sbjct: 167 IKIAKKLTFSEVRATFGLDTSSNIGIIWYPALQIAPT-------MFEKR---RCLIPAGI 216
Query: 62 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 121
DQDPY+R+ RD+A +GY+K A I S F P L G GKMS+S P +AIY+TD K ++ K
Sbjct: 217 DQDPYWRLQRDIAESLGYYKAAQIHSKFLPPLTGPEGKMSSSQPETAIYLTDDPKTVERK 276
Query: 122 INKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEV 180
I KYAFSGGQ ++ELHRK G N ++D+ ++L F E DD +++ I+++Y +G +LTGE+
Sbjct: 277 IMKYAFSGGQPTIELHRKYGGNPDIDVSFQWLYMFFEPDDNKIKKIEEDYRSGALLTGEL 336
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAF 210
KQ L + L + +E H+ R ++V+ F
Sbjct: 337 KQILIEKLNDFLEEHRQKREEAK-KLVNVF 365
>sp|Q97ZX0|SYW_SULSO Tryptophan--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=trpS PE=3 SV=2
Length = 380
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/192 (46%), Positives = 125/192 (65%), Gaps = 11/192 (5%)
Query: 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 61
VK+AK +T+++V FG +IG + +P +Q P+ +F K RCLIP I
Sbjct: 166 VKIAKKLTFSEVRATFGLDASSNIGLIFYPALQIAPT-------MFEKK---RCLIPAGI 215
Query: 62 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 121
DQDPY+R+ RD+A +GY+K A I S F P L G GKMS+S+P +AIY+ D K ++ K
Sbjct: 216 DQDPYWRLQRDIAESLGYYKAAQIHSKFLPPLTGPEGKMSSSNPETAIYLVDDPKTVERK 275
Query: 122 INKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEV 180
I KYAFSGGQ ++ELHRK G N E+D+P ++L +F EDD ++ I++EY +G MLTGE+
Sbjct: 276 IMKYAFSGGQPTIELHRKYGGNPEIDVPFQWLYYFFEEDDNRIKEIEEEYRSGKMLTGEL 335
Query: 181 KQRLAKVLTELV 192
KQ L L +
Sbjct: 336 KQILIDKLNNFL 347
>sp|A3MX72|SYW_PYRCJ Tryptophan--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=trpS PE=3 SV=1
Length = 374
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 124/208 (59%), Gaps = 7/208 (3%)
Query: 3 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAID 62
KVAK +T+N V FGFT +IG + +P +Q +F P G+ LIPCAID
Sbjct: 167 KVAKKLTWNTVKATFGFTDSTNIGLIFYPSLQIAVAF---LPTELHGRP-TPVLIPCAID 222
Query: 63 QDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 122
QDPYFR+ RD+A +GY KPA + S F AL GE+ KMSAS+PNSAIY D K I+ KI
Sbjct: 223 QDPYFRLARDIAESLGYPKPATLYSKFIMALTGES-KMSASNPNSAIYTIDDEKTIRRKI 281
Query: 123 NKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQ 182
A++GG+ + E R+LG N +V Y F DDA +E I +G +L GE KQ
Sbjct: 282 AN-AYTGGRPTAEEQRRLGGNPDVCPVYHYHMLFDPDDASVEKIYHSCKSGALLCGECKQ 340
Query: 183 RLAKVLTELVERHQVARAAVTDEMVDAF 210
L + + + V++HQ AR D+ VDA+
Sbjct: 341 MLYEKIRKFVKQHQEAREKARDK-VDAY 367
>sp|Q8U453|SYW_PYRFU Tryptophan--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=trpS PE=3 SV=1
Length = 385
Score = 154 bits (388), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 122/210 (58%), Gaps = 12/210 (5%)
Query: 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 61
+ +AK + ++ +FGFT + IG + FP +QA P+F F K RCLIP AI
Sbjct: 166 IPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQAAPTF-------FEKK---RCLIPAAI 215
Query: 62 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 121
DQDPY+R+ RD A +GY+K A + S FFP L G GKMSAS P +AIY+TD+ + K
Sbjct: 216 DQDPYWRLQRDFAESLGYYKTAALHSKFFPPLTGLEGKMSASKPETAIYLTDNPEEAGKK 275
Query: 122 INKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEV 180
I K+A +GGQ +++ R+ G N E + K+L F E DD +L G +L GE
Sbjct: 276 IWKFALTGGQPTLKEQREKGGNPEKCVVFKWLEIFFEPDDKKLMERYYACKNGELLCGEC 335
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAF 210
K+ L + + E ++ HQ R +++V+ F
Sbjct: 336 KRYLIQRVQEFLKEHQEKRKKA-EKLVEKF 364
>sp|Q8ZTU5|SYW_PYRAE Tryptophan--tRNA ligase OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=trpS
PE=3 SV=1
Length = 375
Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 12/208 (5%)
Query: 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ-AVPSFPSSFPHLFSGKDHLRCLIPCA 60
V+VAK +T+N V FGFT +IG + +P +Q AV P+ ++ LIPCA
Sbjct: 166 VRVAKKLTWNTVKATFGFTDSTNIGLIFYPSLQIAVAFLPTEL-----RREATPVLIPCA 220
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFR+ RD+A +GY KP+ + S F AL GE+ KMSAS+P+SAIY D K ++
Sbjct: 221 IDQDPYFRLARDIADALGYPKPSTLYSKFIMALTGES-KMSASNPDSAIYTLDDEKTVRR 279
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
K+ AF+GG+ + E RK G N EV Y F DDA +E I+++ +G +L GE
Sbjct: 280 KVMN-AFTGGRPTAEEQRKYGGNPEVCPVFHYHMLFDPDDASVEKIRQDCKSGALLCGEC 338
Query: 181 K----QRLAKVLTELVERHQVARAAVTD 204
K +++ K L E ER + AR V +
Sbjct: 339 KLKLHEKITKFLKEHRERREKARGKVDE 366
>sp|B6YUH1|SYW_THEON Tryptophan--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=trpS PE=3 SV=1
Length = 384
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 114/199 (57%), Gaps = 11/199 (5%)
Query: 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 61
+ +AK + ++ +FGFT + IG + +P +QA P+F F K RCLIP AI
Sbjct: 165 IPIAKKINFSMAKAVFGFTEQSKIGMIFYPAIQAAPTF-------FEKK---RCLIPAAI 214
Query: 62 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 121
DQDPY+R+ RD A +GY+K A I S F P L G GKMSAS P +AIY+TD + + K
Sbjct: 215 DQDPYWRLQRDFAESLGYYKTAAIHSKFVPGLMGLEGKMSASKPETAIYLTDDPEEVGRK 274
Query: 122 INKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEV 180
I KYA +GG+ + + R+ G E + K+L FF EDD +L G +L G+
Sbjct: 275 IWKYALTGGRATAKEQREKGGEPEKCVVFKWLEIFFEEDDKKLMERYHACKNGELLCGQC 334
Query: 181 KQRLAKVLTELVERHQVAR 199
K+ L K + E ++ HQ R
Sbjct: 335 KRYLIKKVQEFLKEHQKKR 353
>sp|A4WL99|SYW_PYRAR Tryptophan--tRNA ligase OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=trpS PE=3 SV=1
Length = 374
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 12/208 (5%)
Query: 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ-AVPSFPSSFPHLFSGKDHLRCLIPCA 60
V+VAK +T+N V FGFT +IG + +P +Q AV P+ K+ LIPCA
Sbjct: 166 VRVAKKLTWNTVKATFGFTDSSNIGLIFYPSLQIAVAFLPTEL-----KKEPTPVLIPCA 220
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFR+ RD+A + Y KP + S F AL GE+ KMSAS+P+SAIY D K +K+
Sbjct: 221 IDQDPYFRLARDIADSLSYPKPTTLYSKFIMALTGES-KMSASNPDSAIYTMDDDKTVKH 279
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
KI AF+GG+ + E RK G N ++ Y F DDA +E I+++ +G +L GE
Sbjct: 280 KILN-AFTGGRPTAEEQRKYGGNPDICPVFHYHMLFDPDDASVEKIRQDCKSGALLCGEC 338
Query: 181 K----QRLAKVLTELVERHQVARAAVTD 204
K ++++K L E ER + AR V +
Sbjct: 339 KLKLHEKISKFLKEHRERREKARGKVDE 366
>sp|Q9UY11|SYW_PYRAB Tryptophan--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=trpS PE=3 SV=1
Length = 385
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 117/206 (56%), Gaps = 11/206 (5%)
Query: 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 61
+ +AK + ++ +FGFT + IG + FP +Q P+F + RCLIP AI
Sbjct: 166 IPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFF----------EKRRCLIPAAI 215
Query: 62 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 121
DQDPY+R+ RD A +GY+K A I S F P+L +GKMSAS P +AIY+TDS + ++ K
Sbjct: 216 DQDPYWRLQRDFAESLGYYKTAAIHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKK 275
Query: 122 INKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEV 180
+ K+A +GG+ +++ R+ G E + K+L FF EDD +L+ G + GE
Sbjct: 276 VWKFALTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGEC 335
Query: 181 KQRLAKVLTELVERHQVARAAVTDEM 206
K+ L + E ++ HQ R ++
Sbjct: 336 KRYLISKIQEFLKEHQKRRKKAEKQI 361
>sp|O59584|SYW_PYRHO Tryptophan--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=trpS PE=1 SV=2
Length = 386
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 121/210 (57%), Gaps = 12/210 (5%)
Query: 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 61
+ +AK + ++ +FGFT + IG + FP +Q P+F F K RCLIP AI
Sbjct: 166 IPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTF-------FERK---RCLIPAAI 215
Query: 62 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 121
DQDPY+R+ RD A +GY+K A + S F P+L +GKMSAS P +AIY+TDS + ++ K
Sbjct: 216 DQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKK 275
Query: 122 INKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEV 180
+ K+ +GG+ +++ R+ G E + K+L FF EDD +L+ G + GE
Sbjct: 276 VWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGEC 335
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAF 210
K+ L + E ++ HQ R +++V+ F
Sbjct: 336 KRYLISKIQEFLKEHQRRRKKA-EKLVEKF 364
>sp|Q5JEP3|SYW_PYRKO Tryptophan--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=trpS PE=3 SV=1
Length = 384
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 111/197 (56%), Gaps = 11/197 (5%)
Query: 4 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 63
+AK + ++ +FGF + IG + +P +QA P+F F K RCLIP AIDQ
Sbjct: 167 IAKKINFSMARAVFGFNEQSKIGMIFYPAIQAAPTF-------FEKK---RCLIPAAIDQ 216
Query: 64 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 123
DPY+R+ RD A +GY+K A I S F P L GKMSAS P +A+Y+TD + KI
Sbjct: 217 DPYWRLQRDFAESLGYYKTAAIHSKFVPGLTSLEGKMSASKPETAVYLTDDPEEAGKKIW 276
Query: 124 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQ 182
K+A +GGQ +++ R+ G N E + K+ F E DD +L + AG + G+ K+
Sbjct: 277 KFALTGGQPTLKEQREKGGNPEKCVVFKWFEIFFEPDDEKLMERYRACKAGELTCGQCKR 336
Query: 183 RLAKVLTELVERHQVAR 199
L + + + ++ HQ R
Sbjct: 337 ELIERVQKFLKEHQKKR 353
>sp|C6A032|SYW_THESM Tryptophan--tRNA ligase OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=trpS PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 115/208 (55%), Gaps = 15/208 (7%)
Query: 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 61
+ +AK VTY+ +FGF + IG + FP +QA P+F F K R LIP AI
Sbjct: 165 IPIAKKVTYSMAKAVFGFNEQSKIGMIFFPAIQAAPTF-------FEEK---RSLIPAAI 214
Query: 62 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 121
DQDPY+R+ RD A +GY+K A + S F P L G GKMSAS P +AIY+TD + K
Sbjct: 215 DQDPYWRIQRDFAESLGYYKTAALHSKFVPGLMGLGGKMSASKPETAIYLTDDPEEAGKK 274
Query: 122 INKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA---GGMLTG 178
I KYA +GG+ + + R+LG + + K+L F E D + + + Y A G +L G
Sbjct: 275 IWKYALTGGRATAKEQRELGGEPDKCVVFKWLEIFFEPDE--KKLLERYIACKNGEILCG 332
Query: 179 EVKQRLAKVLTELVERHQVARAAVTDEM 206
+ K+ L + + ++ HQ R E+
Sbjct: 333 QCKRYLIEKVQNFLKEHQEKREKAKKEI 360
>sp|Q9HN66|SYW2_HALSA Tryptophan--tRNA ligase 2 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS2 PE=3 SV=1
Length = 380
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 114/193 (59%), Gaps = 12/193 (6%)
Query: 23 DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--H 80
D++G+ +P VQ P L G+ L+P A+DQDP+ R++RDVA + Y
Sbjct: 177 DNVGQAFYPAVQTAHLL---LPQLVHGEHE--TLVPIAVDQDPHVRVSRDVAAKARYPVG 231
Query: 81 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKL 140
KP + F P+L G GKMS+S +I +TDS ++ K+ +A++GG+ SVE HR
Sbjct: 232 KPGALLMQFLPSLAG-PGKMSSS-AGVSIRLTDSPDTVREKVRTHAYTGGRASVEEHRAK 289
Query: 141 GANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVAR 199
G D+P +YLS F E DDAEL I++EY AG +L+GE+K A +TE + HQ R
Sbjct: 290 GGVPAEDVPFQYLSAFFEPDDAELARIEREYRAGDLLSGELKDLAADRITEFLAAHQRRR 349
Query: 200 AAVTD--EMVDAF 210
AA+ D E +DAF
Sbjct: 350 AALGDVTEALDAF 362
>sp|Q8TYF7|SYW_METKA Tryptophan--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=trpS PE=3 SV=1
Length = 374
Score = 117 bits (293), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 112/211 (53%), Gaps = 12/211 (5%)
Query: 4 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 63
+A +T+N V +GFTGE ++G P VQA P G R L+P +DQ
Sbjct: 159 LAGRLTWNTVKNTYGFTGETNMGHAFAPIVQAADIL---HPQEIEGPH--RVLVPVGVDQ 213
Query: 64 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 123
DP+ R+TRD+A + KPA F L G GKMS+S PN+AI++TD + K K+
Sbjct: 214 DPHLRLTRDIAEKEDLIKPASTYHRFMTGLTG--GKMSSSKPNTAIFLTDDPETAKEKVW 271
Query: 124 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED----DAELEHIKKEYGAGGMLTGE 179
A +GG ++E HR+ G N + + + + + L D D +L I+K+ G ++ GE
Sbjct: 272 N-AKTGGGATLEEHREHGGNPDECVVYELMVYHLADRIGGDEKLREIRKKCREGDIICGE 330
Query: 180 VKQRLAKVLTELVERHQVARAAVTDEMVDAF 210
K+ + + L E++E + R V DE+ D
Sbjct: 331 CKRMVGEALAEILEELERRREDVRDELPDLL 361
>sp|Q58810|SYW_METJA Tryptophan--tRNA ligase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=trpS PE=3 SV=1
Length = 370
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 108/204 (52%), Gaps = 12/204 (5%)
Query: 4 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 63
++K ++++ I+GF GE +IG V P VQ S + ++P IDQ
Sbjct: 160 LSKRTNWSEMKAIYGFKGETNIGHVFAPIVQVADILHPQLDENLSPE-PKPVVVPVGIDQ 218
Query: 64 DPYFRMTRDVAPRIGYHK---PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
DP+ R+TRD+A R K P+ F L G GKMS+S P +AI++TD K +K
Sbjct: 219 DPHIRLTRDIANRAKEFKFIPPSSTYHRFMTGLLG--GKMSSSKPETAIFLTDDEKTVKK 276
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVK-YLSFFLEDDAELEHIKKEYGAGGMLTGE 179
KI A +GG+E++E H+K G E + + +L + DD EL I ++ +G + G+
Sbjct: 277 KIFS-AKTGGRETLEEHKKYGGVPEECVVYELFLYHLILDDKELAEIYQKCRSGELTCGK 335
Query: 180 VK----QRLAKVLTELVERHQVAR 199
K +R+ + L +L E+ + A+
Sbjct: 336 CKKMAYERVVEFLKDLKEKREQAK 359
>sp|O26352|SYW_METTH Tryptophan--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=trpS PE=3 SV=1
Length = 364
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 11/201 (5%)
Query: 4 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 63
+A V +N++ I+GFTG + + P +Q L + ++P DQ
Sbjct: 157 LAGKVNFNELRAIYGFTGSTSMAHMYAPIIQVSDILHPQLDELGGPRP---VIVPVGPDQ 213
Query: 64 DPYFRMTRDVAPRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 119
DP+ R+TRD+A R G+ P+ F L G GKMS++ P SAI+++D+ + +
Sbjct: 214 DPHIRLTRDIAARFRDRYGFILPSSTYHRFMGGLTG--GKMSSNRPKSAIFLSDTPEEAE 271
Query: 120 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTG 178
KI + A +GG+E+++ R+LG E I + L + + D+ LE I + G ++ G
Sbjct: 272 AKI-RNAKTGGRETLKEQRELGGVPEECIIYETLLYHMSGSDSRLEEIYESCRNGTLMCG 330
Query: 179 EVKQRLAKVLTELVERHQVAR 199
E K A+ + + E V R
Sbjct: 331 ECKNNTAEFIRKFFEELSVKR 351
>sp|Q9Y924|SYW_AERPE Tryptophan--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=trpS PE=1
SV=2
Length = 372
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 12/156 (7%)
Query: 47 FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----YHKPALIESSFFPALQGETGKMSA 102
+ G H+ ++P DQDP+ R+TRD+A R+ +PA P L G KMS+
Sbjct: 204 YGGYRHV--VVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGR--KMSS 259
Query: 103 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF--LEDD 160
S P+S I++TD + +NK+ + A +GG+ + E R+LG EV V ++ + + DD
Sbjct: 260 SRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEV-CSVYHMDLYHLMPDD 317
Query: 161 AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 196
E++HI G +L GE KQ + L + HQ
Sbjct: 318 GEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQ 353
>sp|A2BLD4|SYW_HYPBU Tryptophan--tRNA ligase OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=trpS PE=3 SV=1
Length = 373
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 8/159 (5%)
Query: 55 CLIPCAIDQDPYFRMTRDVAPR----IGYHKPALIESSFFPALQGETGKMSASDPNSAIY 110
++P DQDP+ R+TRD+A R +G +PA F L G KMS+S P I+
Sbjct: 211 VVVPVGADQDPHIRLTRDIAARFENELGLRRPASTYHRFQTGLDG--NKMSSSRPEYTIF 268
Query: 111 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLE-VDIPVKYLSFFLEDDAELEHIKKE 169
+TD K+ + A +GG+ +VE R+LG E + YL +EDD +L I ++
Sbjct: 269 LTDPVDIAVRKLKR-ALTGGRATVEEQRRLGGEPEKCTVYEFYLYHLIEDDTQLRKIYED 327
Query: 170 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVD 208
+L G K+ A++L + +E HQ D +++
Sbjct: 328 CRGSRLLCGPDKEYAAELLAKFLEEHQRRLERARDRVLE 366
>sp|Q8PWV5|SYW_METMA Tryptophan--tRNA ligase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=trpS PE=3 SV=2
Length = 491
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 82 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLG 141
PA F LQG GKMS+S P+S I +TD K K+ K A +GG ++E +KLG
Sbjct: 360 PASTYHRFMSGLQG--GKMSSSIPDSHIALTDDPKEGAKKV-KRAKTGGCITLEEQKKLG 416
Query: 142 ANL-EVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 200
E + L +EDD EL I++E G + G KQ A+ + E ++ HQ R
Sbjct: 417 GKPDECSVFELMLFHLIEDDEELLEIREECIYGTRMCGSCKQLAAEKMQEFLKDHQEKRE 476
Query: 201 AVTDEM 206
+++
Sbjct: 477 LAREQL 482
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 8 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 67
V ++++ I+GF+GE + + QA K ++P DQDP+
Sbjct: 162 VNFSELSAIYGFSGETSLSHMLSVATQAADILQPQLEEFGGSKP---VVVPVGPDQDPHL 218
Query: 68 RMTRDVAPRI 77
R+TR +A ++
Sbjct: 219 RLTRGLAGKM 228
>sp|Q8TUA1|SYW_METAC Tryptophan--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=trpS PE=3 SV=1
Length = 437
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 8/150 (5%)
Query: 68 RMTRDVAPRIGYHK---PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 124
++ R+V G + PA F LQG GKMS+S P S I +TDS K K+ K
Sbjct: 289 KLVREVTVEFGGYAFIPPASTYHRFMSGLQG--GKMSSSIPESQIALTDSPKEGAKKV-K 345
Query: 125 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQR 183
A +GG ++E +KLG E + + F L D EL IK+E +G + G KQ
Sbjct: 346 RAKTGGCVTLEEQKKLGGKPEECSVFELMLFHLIASDEELLEIKQECISGTRMCGSCKQL 405
Query: 184 LAKVLTELVERHQVARAAVTDEMVDAFMAV 213
A+ + E ++ HQ R + E +D + +
Sbjct: 406 AAEKMQEFLKDHQEKR-ELAREHLDEYRII 434
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 8 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 67
V ++++ I+GF+GE + + QA P L ++P DQDP+
Sbjct: 162 VNFSELSAIYGFSGETSLSHMLSVATQAADILQ---PQLEEFGGPKPVVVPVGPDQDPHL 218
Query: 68 RMTRDVAPRI 77
R+TR +A ++
Sbjct: 219 RLTRGLAGKM 228
>sp|O28579|SYW_ARCFU Tryptophan--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=trpS PE=3 SV=1
Length = 420
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 68 RMTRDVAPRIG---YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 124
R R + IG + P+ F L G GKMS+S P S I + D + K+ K
Sbjct: 276 RAVRKIEVEIGGFAFIPPSSTYHRFTTGLTG--GKMSSSKPESYISLLDPPEEGAKKVMK 333
Query: 125 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED-DAELEHIKKEYGAGGMLTGEVKQR 183
AF+GG+ + E R+LG + + + SF L D D EL I+ E G +L G+ K+
Sbjct: 334 -AFTGGRATAEEQRRLGGEPDRCVVFELYSFHLIDSDEELNQIEAECREGRLLCGKCKKM 392
Query: 184 LAKVLTELVERHQVARAAV 202
A+++ ++ HQ AV
Sbjct: 393 AAELVKSFLKEHQEKMEAV 411
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 8 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 67
V ++++ I+GF + + K+ +QA P L ++P DQDP+
Sbjct: 159 VNFSELRAIYGFNSDTSLAKMFVTAIQAADIL---HPQLSDFGGPKPVVVPVGADQDPHM 215
Query: 68 RMTRDVAPRI 77
R+TRD+A RI
Sbjct: 216 RLTRDLAARI 225
>sp|Q9HN83|SYW1_HALSA Tryptophan--tRNA ligase 1 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS1 PE=3 SV=1
Length = 513
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 78 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELH 137
G+ P+ + F L G GKMS+S+P S I + D + +K+ A +GG+++
Sbjct: 374 GFVPPSSVYHRFMTGLTG--GKMSSSEPASHISLLDDPETGADKVAA-ATTGGRDTAAEQ 430
Query: 138 RKLGANLEVDIPVKYLSFFL---EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 194
R+ G + D PV L +L +DDA E + E G L G K++ A ++ + +E
Sbjct: 431 RERGGEPD-DCPVYELYAYLLAGDDDALAEEVYAECANGDRLCGGCKEQAADLMAQFLET 489
Query: 195 HQVARAAVTD 204
HQ R A D
Sbjct: 490 HQENREAARD 499
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 16 IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 75
I+GF G+ + + Q +P L + K +IP DQDP+ R RD+A
Sbjct: 182 IYGFGGDTDVSHMQSVVTQMADIL---YPQLDAPK---PTVIPVGPDQDPHVRFARDLAE 235
Query: 76 RIGYHK 81
R Y K
Sbjct: 236 RTRYFK 241
>sp|Q978Y8|SYW_THEVO Tryptophan--tRNA ligase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=trpS
PE=3 SV=1
Length = 426
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 82 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLG 141
P+ L+G GKMS+S P+S I + D + K KI + A +GG+++ E RKLG
Sbjct: 299 PSATYQKLMKGLKG--GKMSSSVPDSLISMNDDVEEAKRKIMR-ALTGGRDTEEEQRKLG 355
Query: 142 ANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTG----EVKQRLAKVLTELVERHQV 197
E ++ ++DD + + +E +G + G E+ +++ L ++ E+ ++
Sbjct: 356 GEPEKCPVFDLYNYEIDDDKYVNEVFEECKSGKRMCGYCKREIADKMSIFLKDIKEKREI 415
Query: 198 ARAAVT 203
AR ++
Sbjct: 416 AREKLS 421
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 4 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 63
+ N++ ++GFT + I ++ P +QA + + + G ++P DQ
Sbjct: 149 LGNWTNMNELKALYGFTDSNDILHINAPLIQAADVLHTQLNN-YGGP--APTVVPVGFDQ 205
Query: 64 DPYFRMTRDVAPRI 77
DP+ R+ RD+A R+
Sbjct: 206 DPHIRLMRDLAKRM 219
>sp|P36421|SYYC_YEAST Tyrosine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TYS1 PE=1 SV=3
Length = 394
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 60 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 119
+DQ F + + P +GY K A + + P L + GKMSASDPNS I + + K +K
Sbjct: 189 GVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGL-AQGGKMSASDPNSKIDLLEEPKQVK 247
Query: 120 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 155
KIN S G +VE + L V P++ L F
Sbjct: 248 KKINSAFCSPG--NVEENGLLSFVQYVIAPIQELKF 281
>sp|Q9YA64|SYY_AERPE Tyrosine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=tyrS PE=1 SV=1
Length = 364
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 43/222 (19%)
Query: 1 MVKVAKCVTYNKV---VGIFGFTGED---HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR 54
+++VAK + +V + I G E+ K+ +P +Q F G
Sbjct: 130 VIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVSDIFYMDLDIALGG----- 184
Query: 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------------ETGK 99
+DQ + RDVA ++G KP I + +LQG K
Sbjct: 185 ------MDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVK 238
Query: 100 MSASDPNSAIYVTDSAKAIKNKINKYAFSG----GQESVELHRKL-----GANLEVDIPV 150
MS S P +A++V DS I+ KI K G +E+ R + G L VD P
Sbjct: 239 MSKSKPETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPA 298
Query: 151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 192
KY + E ++++Y G + ++K +A+ L E+V
Sbjct: 299 KYGGPV--EYTSYEELERDYTDGRLHPLDLKNAVAESLIEVV 338
>sp|O84589|SYW_CHLTR Tryptophan--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=trpS PE=3 SV=1
Length = 346
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPA---LQGE---------TGKMSAS 103
L+P D + + +TRD+A + FP LQGE GKMS S
Sbjct: 151 LVPVGKDNEAHVELTRDIAKTFNR-----LYGEVFPEPDILQGELTALVGTNGQGKMSKS 205
Query: 104 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL 163
N+AIY++D AK ++ KI K + +H +E + Y F E+
Sbjct: 206 -ANNAIYLSDDAKTVQEKIRKLYTDPNR----IHATTPGRVEGNPLFIYHDLFNPHKEEV 260
Query: 164 EHIKKEYGAGGMLTGEVKQRLAK 186
E K Y G + EVK RLA+
Sbjct: 261 EEFKTRYRQGCIRDVEVKARLAE 283
>sp|Q6L2J1|SYY_PICTO Tyrosine--tRNA ligase OS=Picrophilus torridus (strain ATCC 700027 /
DSM 9790 / JCM 10055 / NBRC 100828) GN=tyrS PE=3 SV=1
Length = 329
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 46/218 (21%)
Query: 1 MVKVAKCVTYNKV---VGIFGFTGED---HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR 54
++KVAK + ++ + I G + ED K +P +Q F G
Sbjct: 122 LLKVAKNASLLRIRRSLPIMGRSEEDADRDFSKYIYPLMQVTDIFYLDVDFALGG----- 176
Query: 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGET-----GKMSASDPNSAI 109
+DQ + RD+A R+ KP + + +L+G KMS S+P+SAI
Sbjct: 177 ------MDQRHAHMLARDIAERMNIKKPVSVHTPLLSSLKGSGRMDSFKKMSKSEPDSAI 230
Query: 110 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF-FLED--------- 159
++TDS IK KI K A+ +E + N +DI +KY+ F + D
Sbjct: 231 FMTDSNDDIKRKI-KNAYCPMKE-------VNGNPVIDI-LKYIIFPYYNDKISIKRPES 281
Query: 160 -----DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 192
D +++ + + Y +G + ++K + ++L +++
Sbjct: 282 KGGPVDVDMDSLTRMYISGEIHPVDLKNAVGELLCDII 319
>sp|Q9PJF5|SYW_CHLMU Tryptophan--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=trpS PE=3 SV=1
Length = 346
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPA---LQGE---------TGKMSAS 103
L+P D + + +TRD+A + S FP LQGE GKMS S
Sbjct: 151 LVPVGKDNEAHVELTRDIAKTFNR-----LYGSVFPEPDILQGELTSLVGTNGQGKMSKS 205
Query: 104 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL 163
N+AIY++D K ++ KI K + +H +E + Y F E+
Sbjct: 206 -ANNAIYLSDDEKTVQEKIRKMYTDPNR----VHATTPGRVEGNPLFIYHDLFNPHKEEV 260
Query: 164 EHIKKEYGAGGMLTGEVKQRLAK 186
E K Y G + EVK RLA+
Sbjct: 261 EEFKTRYRQGCIKDVEVKARLAE 283
>sp|Q9HIW5|SYW_THEAC Tryptophan--tRNA ligase OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=trpS PE=3 SV=1
Length = 426
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 73 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 132
+AP Y K L+G GKMS+S P+S I + D K + KI +GG++
Sbjct: 297 IAPSATYQK-------LMKGLKG--GKMSSSVPDSLISLNDDPKEARRKIMA-GMTGGRD 346
Query: 133 SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTG----EVKQRLAKVL 188
+ E R+LG + ++ ++DD ++ + + G + G E+ R+A L
Sbjct: 347 TEEEQRRLGGEPDRCPIFDLYNYEIDDDKHVKEVYDDCRNGKRMCGFCKREIADRMASWL 406
Query: 189 TELVERHQVARAAVT 203
++L ++ + AR ++
Sbjct: 407 SDLSKKREEAREKLS 421
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 11 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT 70
+++ ++GFT + ++ P +QA + + G ++P DQDP+ R+
Sbjct: 156 SELRSLYGFTDTHDLLHINAPLIQAADVLHTQMKK-YGGP--APTVVPVGFDQDPHLRLM 212
Query: 71 RDVAPRI 77
RD+A R+
Sbjct: 213 RDLAKRM 219
>sp|Q821H9|SYW_CHLCV Tryptophan--tRNA ligase OS=Chlamydophila caviae (strain GPIC)
GN=trpS PE=3 SV=1
Length = 345
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 22/159 (13%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP---ALQGE---------TGKMSAS 103
L+P D + + +TRD+A + FP LQGE GKMS S
Sbjct: 152 LVPVGKDNEAHIELTRDIARNFNR-----LYGEIFPEPETLQGELTSLVGIDGQGKMSKS 206
Query: 104 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL 163
N+AIY++D I++K+ + + +H +E + Y F + E+
Sbjct: 207 -ANNAIYLSDDDATIEDKVRRMYTDPNR----IHASTPGRVEGNPLFIYHDIFNPNKEEV 261
Query: 164 EHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 202
E K Y G + E+K RLA+ L ++ + RA +
Sbjct: 262 EEFKTRYRQGCIKDVEIKTRLAEELIRFLQPFREKRAEL 300
>sp|P0DG61|SYW_STRPQ Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=trpS PE=3 SV=1
Length = 340
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 24/153 (15%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------SSFFPALQGETGKMSAS 103
L+P DQ P TR++ YH L+E + P L G KMS S
Sbjct: 148 LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKS 206
Query: 104 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--EDDA 161
N IY++D A ++ K+ +E ++ N+ YL F ED A
Sbjct: 207 LGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM----VFHYLDIFARKEDQA 261
Query: 162 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 194
++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 262 DIEAMKEHYQRGGL--GDVKTK--RYLLDILER 290
>sp|P67598|SYW_STRP8 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=trpS PE=3 SV=1
Length = 340
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 24/153 (15%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------SSFFPALQGETGKMSAS 103
L+P DQ P TR++ YH L+E + P L G KMS S
Sbjct: 148 LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKS 206
Query: 104 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--EDDA 161
N IY++D A ++ K+ +E ++ N+ YL F ED A
Sbjct: 207 LGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM----VFHYLDIFARKEDQA 261
Query: 162 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 194
++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 262 DIEAMKEHYQRGGL--GDVKTK--RYLLDILER 290
>sp|Q5X9A2|SYW_STRP6 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=trpS PE=3 SV=2
Length = 340
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 24/153 (15%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------SSFFPALQGETGKMSAS 103
L+P DQ P TR++ YH L+E + P L G KMS S
Sbjct: 148 LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKS 206
Query: 104 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--EDDA 161
N IY++D A ++ K+ +E ++ N+ YL F ED A
Sbjct: 207 LGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM----VFHYLDIFARKEDQA 261
Query: 162 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 194
++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 262 DIEAMKEHYQRGGL--GDVKTK--RYLLDILER 290
>sp|P0DG60|SYW_STRP3 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=trpS PE=3 SV=1
Length = 340
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 24/153 (15%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------SSFFPALQGETGKMSAS 103
L+P DQ P TR++ YH L+E + P L G KMS S
Sbjct: 148 LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKS 206
Query: 104 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--EDDA 161
N IY++D A ++ K+ +E ++ N+ YL F ED A
Sbjct: 207 LGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM----VFHYLDIFARKEDQA 261
Query: 162 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 194
++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 262 DIEAMKEHYQRGGL--GDVKTK--RYLLDILER 290
>sp|Q99XH4|SYW_STRP1 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M1
GN=trpS PE=3 SV=1
Length = 340
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 24/153 (15%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------SSFFPALQGETGKMSAS 103
L+P DQ P TR++ YH L+E + P L G KMS S
Sbjct: 148 LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKS 206
Query: 104 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--EDDA 161
N IY++D A ++ K+ +E ++ N+ YL F ED A
Sbjct: 207 LGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM----VFHYLDIFARKEDQA 261
Query: 162 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 194
++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 262 DIEAMKEHYQIGGL--GDVKTK--RYLLDILER 290
>sp|Q3IQU8|SYY_NATPD Tyrosine--tRNA ligase OS=Natronomonas pharaonis (strain DSM 2160 /
ATCC 35678) GN=tyrS PE=3 SV=1
Length = 345
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 60 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 119
IDQ + + R+ P GY KPA + + L G GKMSAS+ S I +TD +AI
Sbjct: 182 GIDQRGIYMLAREQLPDHGYDKPACVFAPLLSGLSG--GKMSASEAGSKINLTDDGEAID 239
Query: 120 NKIN 123
KI
Sbjct: 240 EKIG 243
>sp|Q9HKT3|SYY_THEAC Tyrosine--tRNA ligase OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=tyrS PE=3 SV=1
Length = 332
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 41/159 (25%)
Query: 60 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETG-----KMSASDPNSAIYVTDS 114
+DQ + RD+A ++ K + +L+G KMS SDPNSAI VTD
Sbjct: 175 GMDQRHAHMLARDIAEKMKRKKVVSVHGFLLSSLKGNARMDNFVKMSKSDPNSAILVTDH 234
Query: 115 AKAIKNKINKYAFSGGQE--------------------SVELHRKLGANLEVDIPVKYLS 154
+ I+ KIN A+ Q+ S+E+H G+N +++
Sbjct: 235 MEDIERKINA-AYCPPQQVEGNPVAEIMKYIIIPYYGKSIEIH---GSNGVINLD----- 285
Query: 155 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
+E+ + Y G + ++K ++A +L E+VE
Sbjct: 286 -------SVENFDQAYQRGEIQPADLKHKVATILNEMVE 317
>sp|Q979Z1|SYY_THEVO Tyrosine--tRNA ligase OS=Thermoplasma volcanium (strain ATCC 51530
/ DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=tyrS PE=3
SV=1
Length = 331
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 21/148 (14%)
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETG-----KMSASDPNSAIYVTDSA 115
+DQ + RD+A ++ K + +L+G T KMS SDPNSAI + D
Sbjct: 175 MDQRHAHMLARDIADKMKVKKAVSVHGYLLSSLKGNTRMDNFVKMSKSDPNSAILINDEY 234
Query: 116 KAIKNKINKYAFS-----GGQESVELHRKL-----GANLEVDIPVKYLSFFLEDDAELEH 165
K I+ K+N AF G E+ + + G ++ ++ P + ++
Sbjct: 235 KDIERKVNA-AFCPPEKVDGNPLAEIMKYVLIPYYGRDIIIEKPSGNVRI-----ENVDQ 288
Query: 166 IKKEYGAGGMLTGEVKQRLAKVLTELVE 193
+ +Y +G + E+K+ + +L E++E
Sbjct: 289 FQNDYISGKIAPTELKKAMIPILDEMIE 316
>sp|Q9RVD6|SYW2_DEIRA Tryptophan--tRNA ligase 2 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=trpS2 PE=1 SV=1
Length = 351
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 69/155 (44%), Gaps = 16/155 (10%)
Query: 55 CLIPCAIDQDPYFRMTRDVAPRI-GYHKPALIES----SFFPALQGETG--KMSASDPNS 107
L+P DQ P TR++ R + P L E S P L G G KMS S N
Sbjct: 164 TLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGN- 222
Query: 108 AIYVTDSAKAIKNKI-NKYAFSGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDAELEH 165
AI + DSA + K+ Y G + + R G PV +L F D A ++
Sbjct: 223 AIALGDSADEVARKVMGMYTDPGHLRASDPGRVEGN------PVFTFLDAFDPDPARVQA 276
Query: 166 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 200
+K +Y AGG+ +VK+ L VL ++ + RA
Sbjct: 277 LKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRA 311
>sp|Q5V4J1|SYY_HALMA Tyrosine--tRNA ligase OS=Haloarcula marismortui (strain ATCC 43049
/ DSM 3752 / JCM 8966 / VKM B-1809) GN=tyrS PE=3 SV=1
Length = 346
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 60 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 119
+DQ + ++R++ P G P + + L G GKMSASD S + +TDS +
Sbjct: 181 GVDQRGIYMLSREILPDHGGESPICLFAPLLSGLSG--GKMSASDEASKVNLTDSPDEVD 238
Query: 120 NKINKYAFSGGQ 131
KIN+ G+
Sbjct: 239 EKINQAYCPAGE 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,120,958
Number of Sequences: 539616
Number of extensions: 3492402
Number of successful extensions: 9814
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 9657
Number of HSP's gapped (non-prelim): 188
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)