Query 027582
Match_columns 221
No_of_seqs 175 out of 1141
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 12:04:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02486 aminoacyl-tRNA ligase 100.0 7.8E-58 1.7E-62 415.7 18.3 216 2-217 168-383 (383)
2 COG0180 TrpS Tryptophanyl-tRNA 100.0 1.5E-56 3.4E-61 395.6 15.0 196 2-215 107-312 (314)
3 KOG2145 Cytoplasmic tryptophan 100.0 1.1E-54 2.4E-59 375.0 15.1 218 1-220 180-397 (397)
4 PRK12285 tryptophanyl-tRNA syn 100.0 4.2E-53 9.2E-58 383.5 16.5 199 2-215 157-366 (368)
5 PRK00927 tryptophanyl-tRNA syn 100.0 2.3E-53 5E-58 381.6 14.3 198 2-215 100-310 (333)
6 PRK12282 tryptophanyl-tRNA syn 100.0 4E-52 8.6E-57 373.3 14.9 197 2-215 102-309 (333)
7 PLN02886 aminoacyl-tRNA ligase 100.0 1E-51 2.2E-56 375.0 14.3 196 1-215 144-364 (389)
8 PRK12556 tryptophanyl-tRNA syn 100.0 2.3E-51 5.1E-56 368.0 15.7 193 1-215 103-311 (332)
9 PRK12284 tryptophanyl-tRNA syn 100.0 9.1E-51 2E-55 371.5 14.8 193 1-215 102-311 (431)
10 TIGR00233 trpS tryptophanyl-tR 100.0 6.4E-50 1.4E-54 358.5 17.6 197 4-214 96-307 (328)
11 PRK12283 tryptophanyl-tRNA syn 100.0 2.2E-49 4.9E-54 359.6 15.5 196 1-215 101-376 (398)
12 KOG2713 Mitochondrial tryptoph 100.0 1.2E-49 2.7E-54 342.6 11.5 196 1-215 115-324 (347)
13 PRK08560 tyrosyl-tRNA syntheta 100.0 1E-46 2.2E-51 338.1 13.1 177 3-202 125-323 (329)
14 cd00806 TrpRS_core catalytic c 100.0 1.8E-45 3.8E-50 323.6 14.1 172 4-190 93-279 (280)
15 PTZ00126 tyrosyl-tRNA syntheta 100.0 3.4E-44 7.3E-49 326.7 14.2 177 3-202 166-366 (383)
16 PTZ00348 tyrosyl-tRNA syntheta 100.0 8.1E-44 1.7E-48 342.0 14.9 188 4-203 133-341 (682)
17 PF00579 tRNA-synt_1b: tRNA sy 100.0 5.2E-40 1.1E-44 289.8 5.5 177 2-193 109-292 (292)
18 cd00805 TyrRS_core catalytic c 100.0 5.1E-38 1.1E-42 274.8 9.9 156 3-190 106-268 (269)
19 KOG2144 Tyrosyl-tRNA synthetas 100.0 5.7E-37 1.2E-41 264.8 11.9 182 3-204 134-336 (360)
20 cd00395 Tyr_Trp_RS_core cataly 100.0 5.9E-35 1.3E-39 256.0 9.8 157 4-190 107-272 (273)
21 PTZ00348 tyrosyl-tRNA syntheta 100.0 7.5E-33 1.6E-37 266.3 13.4 177 1-200 472-661 (682)
22 PRK05912 tyrosyl-tRNA syntheta 100.0 6E-33 1.3E-37 255.3 12.2 166 4-202 140-318 (408)
23 PRK13354 tyrosyl-tRNA syntheta 100.0 6.1E-32 1.3E-36 248.6 13.2 166 4-203 138-317 (410)
24 TIGR00234 tyrS tyrosyl-tRNA sy 99.9 5.2E-24 1.1E-28 194.4 8.5 148 3-195 134-295 (377)
25 COG0162 TyrS Tyrosyl-tRNA synt 99.8 4.7E-20 1E-24 168.7 12.8 166 3-202 135-310 (401)
26 cd00802 class_I_aaRS_core cata 99.0 3.2E-10 7E-15 89.9 2.7 65 30-104 78-143 (143)
27 KOG2623 Tyrosyl-tRNA synthetas 98.8 7.1E-09 1.5E-13 94.0 7.5 161 4-194 185-351 (467)
28 cd00808 GluRS_core catalytic c 98.4 3.3E-07 7.2E-12 79.2 4.2 104 5-124 84-191 (239)
29 PRK00750 lysK lysyl-tRNA synth 97.8 3.2E-05 7E-10 73.7 6.4 56 55-113 236-293 (510)
30 cd00418 GlxRS_core catalytic c 97.1 0.00049 1.1E-08 59.3 4.2 86 29-124 93-182 (230)
31 cd00674 LysRS_core_class_I cat 97.0 0.00037 8E-09 63.6 2.4 59 49-113 226-288 (353)
32 COG0162 TyrS Tyrosyl-tRNA synt 96.5 0.004 8.6E-08 57.8 5.4 128 74-204 207-359 (401)
33 PRK01406 gltX glutamyl-tRNA sy 95.5 0.037 8.1E-07 52.5 6.9 66 55-124 209-280 (476)
34 cd00668 Ile_Leu_Val_MetRS_core 94.9 0.02 4.3E-07 51.0 2.8 54 56-112 229-285 (312)
35 TIGR00464 gltX_bact glutamyl-t 94.9 0.27 5.8E-06 46.7 10.5 66 55-124 199-270 (470)
36 PRK01611 argS arginyl-tRNA syn 94.8 0.021 4.4E-07 54.5 2.9 59 56-117 276-339 (507)
37 PRK05743 ileS isoleucyl-tRNA s 94.5 0.027 5.9E-07 57.4 3.1 56 48-110 543-602 (912)
38 PRK14895 gltX glutamyl-tRNA sy 94.3 0.097 2.1E-06 50.1 6.0 121 55-190 198-332 (513)
39 cd00817 ValRS_core catalytic c 94.1 0.036 7.9E-07 51.0 2.7 55 56-113 299-356 (382)
40 cd00818 IleRS_core catalytic c 93.8 0.047 1E-06 49.4 2.8 53 56-112 255-311 (338)
41 cd00671 ArgRS_core catalytic c 93.5 0.078 1.7E-06 44.7 3.5 45 58-104 164-211 (212)
42 cd00812 LeuRS_core catalytic c 93.4 0.042 9.1E-07 49.1 1.8 54 56-113 227-288 (314)
43 TIGR00456 argS arginyl-tRNA sy 93.0 0.08 1.7E-06 51.2 3.1 63 56-124 331-396 (566)
44 TIGR00392 ileS isoleucyl-tRNA 92.6 0.083 1.8E-06 53.5 2.7 53 56-112 567-623 (861)
45 PRK14900 valS valyl-tRNA synth 92.6 0.087 1.9E-06 54.6 2.9 65 56-124 494-567 (1052)
46 PRK04156 gltX glutamyl-tRNA sy 92.4 0.09 2E-06 50.9 2.6 68 27-105 277-344 (567)
47 PRK13804 ileS isoleucyl-tRNA s 92.3 0.09 2E-06 54.0 2.5 57 48-111 581-641 (961)
48 PLN02286 arginine-tRNA ligase 92.2 0.42 9E-06 46.5 6.9 67 55-124 330-402 (576)
49 TIGR00467 lysS_arch lysyl-tRNA 92.1 0.075 1.6E-06 51.0 1.7 55 55-111 227-285 (515)
50 PRK05729 valS valyl-tRNA synth 92.0 0.1 2.2E-06 53.1 2.5 54 56-113 476-533 (874)
51 PRK11893 methionyl-tRNA synthe 91.9 0.073 1.6E-06 50.4 1.3 63 56-124 257-328 (511)
52 PTZ00419 valyl-tRNA synthetase 91.6 0.13 2.9E-06 53.0 2.8 55 49-110 537-595 (995)
53 PRK13208 valS valyl-tRNA synth 91.5 0.13 2.8E-06 51.7 2.7 52 56-112 489-545 (800)
54 PRK00260 cysS cysteinyl-tRNA s 91.4 0.095 2.1E-06 49.5 1.5 52 56-113 223-279 (463)
55 PLN02381 valyl-tRNA synthetase 91.4 0.12 2.5E-06 53.8 2.2 55 49-110 607-665 (1066)
56 PLN02843 isoleucyl-tRNA synthe 91.3 0.14 3E-06 52.7 2.7 56 48-110 562-621 (974)
57 PF00133 tRNA-synt_1: tRNA syn 91.3 0.086 1.9E-06 51.3 1.1 57 49-111 513-572 (601)
58 PRK00133 metG methionyl-tRNA s 90.9 1.2 2.5E-05 44.1 8.6 52 56-113 287-342 (673)
59 TIGR00435 cysS cysteinyl-tRNA 90.7 0.13 2.8E-06 48.7 1.7 61 45-112 214-277 (465)
60 PLN02943 aminoacyl-tRNA ligase 90.5 0.16 3.4E-06 52.3 2.2 69 49-124 535-612 (958)
61 TIGR03838 queuosine_YadB gluta 90.2 0.44 9.5E-06 42.1 4.5 68 55-124 187-254 (272)
62 PRK12300 leuS leucyl-tRNA synt 90.1 0.18 4E-06 51.4 2.2 53 56-112 533-589 (897)
63 PLN02959 aminoacyl-tRNA ligase 90.0 0.24 5.3E-06 51.5 3.1 57 49-113 670-731 (1084)
64 TIGR00422 valS valyl-tRNA synt 89.9 0.21 4.4E-06 50.8 2.4 69 49-124 477-554 (861)
65 PRK05710 glutamyl-Q tRNA(Asp) 89.8 0.29 6.2E-06 43.9 3.0 50 55-106 194-243 (299)
66 PRK06039 ileS isoleucyl-tRNA s 89.8 0.22 4.8E-06 51.3 2.6 56 49-111 544-603 (975)
67 PRK12418 cysteinyl-tRNA synthe 89.7 0.26 5.7E-06 45.6 2.8 62 45-112 209-273 (384)
68 TIGR00395 leuS_arch leucyl-tRN 89.7 0.19 4.1E-06 51.5 2.0 64 56-124 576-649 (938)
69 PRK12267 methionyl-tRNA synthe 89.7 1.3 2.9E-05 43.5 7.9 63 56-124 257-328 (648)
70 cd00814 MetRS_core catalytic c 89.0 0.2 4.4E-06 44.8 1.4 53 56-112 238-292 (319)
71 cd00672 CysRS_core catalytic c 88.8 0.22 4.7E-06 42.3 1.5 63 45-113 123-187 (213)
72 TIGR00396 leuS_bact leucyl-tRN 88.5 0.23 5.1E-06 50.3 1.7 60 49-112 519-616 (842)
73 COG0008 GlnS Glutamyl- and glu 88.4 0.28 6.1E-06 46.6 2.0 49 55-105 208-256 (472)
74 PF01921 tRNA-synt_1f: tRNA sy 88.2 0.064 1.4E-06 49.1 -2.3 67 55-124 236-311 (360)
75 TIGR03447 mycothiol_MshC cyste 87.9 0.34 7.4E-06 45.2 2.2 52 57-111 245-299 (411)
76 PRK12268 methionyl-tRNA synthe 87.5 0.4 8.6E-06 46.1 2.5 55 55-113 289-347 (556)
77 PLN02563 aminoacyl-tRNA ligase 86.8 0.29 6.3E-06 50.4 1.2 41 49-92 615-664 (963)
78 PLN02882 aminoacyl-tRNA ligase 86.6 0.51 1.1E-05 49.5 2.9 51 56-110 570-624 (1159)
79 KOG0432 Valyl-tRNA synthetase 86.5 0.53 1.1E-05 47.6 2.8 24 83-109 579-602 (995)
80 COG0018 ArgS Arginyl-tRNA synt 86.4 0.8 1.7E-05 44.6 3.9 72 49-122 332-405 (577)
81 COG1384 LysS Lysyl-tRNA synthe 85.7 0.52 1.1E-05 45.0 2.2 60 49-114 228-291 (521)
82 PLN02224 methionine-tRNA ligas 85.2 5.3 0.00012 39.3 9.0 65 56-124 324-395 (616)
83 PTZ00402 glutamyl-tRNA synthet 84.8 0.64 1.4E-05 45.4 2.4 66 29-105 229-294 (601)
84 TIGR00398 metG methionyl-tRNA 84.2 0.63 1.4E-05 44.5 2.1 54 56-113 285-340 (530)
85 PRK00390 leuS leucyl-tRNA synt 84.2 0.46 9.9E-06 48.0 1.1 52 49-112 522-582 (805)
86 PRK12451 arginyl-tRNA syntheta 83.5 1.3 2.8E-05 43.0 3.9 63 50-117 323-388 (562)
87 PTZ00427 isoleucine-tRNA ligas 83.4 0.87 1.9E-05 48.0 2.8 53 49-109 672-729 (1205)
88 COG0060 IleS Isoleucyl-tRNA sy 81.1 2.4 5.2E-05 43.5 4.9 57 56-121 558-619 (933)
89 PLN03233 putative glutamate-tR 80.9 1 2.3E-05 43.3 2.2 65 29-104 187-251 (523)
90 COG0495 LeuS Leucyl-tRNA synth 80.6 15 0.00032 37.4 10.2 54 57-113 530-592 (814)
91 PRK12558 glutamyl-tRNA synthet 79.9 1.6 3.5E-05 41.2 3.1 70 55-126 198-271 (445)
92 PLN02627 glutamyl-tRNA synthet 79.8 1.7 3.7E-05 42.0 3.2 68 55-124 251-322 (535)
93 PTZ00399 cysteinyl-tRNA-synthe 79.7 0.69 1.5E-05 45.7 0.5 66 32-113 258-328 (651)
94 PF01406 tRNA-synt_1e: tRNA sy 79.6 0.94 2E-05 40.6 1.3 50 57-111 210-263 (300)
95 cd02156 nt_trans nucleotidyl t 79.2 0.96 2.1E-05 33.5 1.1 44 56-104 59-105 (105)
96 cd09287 GluRS_non_core catalyt 79.2 1.3 2.9E-05 38.4 2.1 67 28-105 106-172 (240)
97 PF00750 tRNA-synt_1d: tRNA sy 78.9 1 2.2E-05 41.1 1.3 69 49-120 236-308 (354)
98 PRK12410 glutamylglutaminyl-tR 78.1 1.5 3.2E-05 41.3 2.2 134 55-204 192-343 (433)
99 PRK14536 cysS cysteinyl-tRNA s 74.1 1.7 3.6E-05 41.6 1.4 52 57-111 237-290 (490)
100 PLN02946 cysteine-tRNA ligase 74.0 1.1 2.4E-05 43.5 0.1 50 58-111 282-334 (557)
101 COG0215 CysS Cysteinyl-tRNA sy 72.6 1.7 3.7E-05 41.2 1.1 58 58-119 226-292 (464)
102 PF00749 tRNA-synt_1c: tRNA sy 72.3 1.3 2.8E-05 39.8 0.2 68 55-124 201-274 (314)
103 PLN02859 glutamine-tRNA ligase 72.1 2.9 6.2E-05 42.2 2.6 67 28-105 439-505 (788)
104 PRK14535 cysS cysteinyl-tRNA s 68.5 1.8 4E-05 42.9 0.4 23 85-111 497-519 (699)
105 COG0525 ValS Valyl-tRNA synthe 68.3 3.3 7E-05 42.3 2.0 51 56-110 481-535 (877)
106 PF09334 tRNA-synt_1g: tRNA sy 67.8 1.3 2.9E-05 40.9 -0.7 53 55-111 284-338 (391)
107 PLN02907 glutamate-tRNA ligase 67.0 3.5 7.5E-05 41.3 2.0 65 29-104 389-453 (722)
108 PRK14534 cysS cysteinyl-tRNA s 66.8 2.3 5E-05 40.6 0.7 52 56-111 236-290 (481)
109 PLN02610 probable methionyl-tR 65.1 3.3 7.1E-05 42.0 1.4 65 56-124 304-378 (801)
110 cd00807 GlnRS_core catalytic c 64.7 4.7 0.0001 35.0 2.1 68 27-105 103-170 (238)
111 COG0143 MetG Methionyl-tRNA sy 63.9 24 0.00052 34.4 6.9 66 56-124 291-362 (558)
112 KOG0437 Leucyl-tRNA synthetase 63.2 16 0.00035 37.0 5.6 37 98-135 709-745 (1080)
113 PRK05347 glutaminyl-tRNA synth 50.6 12 0.00026 36.4 2.5 66 29-105 210-276 (554)
114 KOG0433 Isoleucyl-tRNA synthet 45.2 20 0.00043 36.2 3.0 59 55-121 568-630 (937)
115 COG2442 Uncharacterized conser 43.7 63 0.0014 23.1 4.8 47 141-190 21-71 (79)
116 TIGR00440 glnS glutaminyl-tRNA 41.5 20 0.00043 34.7 2.4 66 29-105 181-247 (522)
117 COG0112 GlyA Glycine/serine hy 40.8 88 0.0019 29.3 6.4 23 108-132 237-259 (413)
118 KOG1149 Glutamyl-tRNA syntheta 37.9 24 0.00053 33.5 2.3 94 28-124 211-310 (524)
119 KOG3046 Transcription factor, 37.0 91 0.002 25.0 5.1 37 167-203 100-137 (147)
120 TIGR00463 gltX_arch glutamyl-t 37.0 20 0.00044 35.0 1.7 66 29-104 269-334 (560)
121 PRK07217 replication factor A; 34.8 1.1E+02 0.0023 27.8 5.8 51 161-212 6-59 (311)
122 PF06825 HSBP1: Heat shock fac 33.6 1.4E+02 0.0031 19.8 4.9 27 183-209 3-29 (54)
123 PRK14703 glutaminyl-tRNA synth 24.3 54 0.0012 33.3 2.3 65 29-104 212-278 (771)
124 PF04255 DUF433: Protein of un 23.8 1.2E+02 0.0027 19.8 3.3 25 159-185 30-54 (56)
125 KOG0434 Isoleucyl-tRNA synthet 23.4 51 0.0011 33.3 1.9 74 21-106 532-608 (1070)
126 KOG4117 Heat shock factor bind 23.3 2.4E+02 0.0052 19.6 4.6 27 183-209 16-42 (73)
127 PHA02713 hypothetical protein; 22.4 6.5E+02 0.014 24.3 9.3 98 107-219 67-184 (557)
128 PF10158 LOH1CR12: Tumour supp 21.9 2E+02 0.0044 22.5 4.7 43 177-221 83-129 (131)
129 PF09748 Med10: Transcription 21.8 1.3E+02 0.0027 23.4 3.5 32 170-201 95-127 (128)
130 PF09164 VitD-bind_III: Vitami 21.6 73 0.0016 22.2 1.8 25 165-191 1-25 (68)
131 PTZ00437 glutaminyl-tRNA synth 20.7 68 0.0015 31.5 2.1 67 28-105 226-292 (574)
No 1
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=7.8e-58 Score=415.67 Aligned_cols=216 Identities=85% Similarity=1.326 Sum_probs=204.9
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCC
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK 81 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~ 81 (221)
++|+|++|++++++++||.++.++|+++||+|||||+|+.+||-++....+++|+||||+||+||++|||++|+|||+.+
T Consensus 168 ~~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia~r~~~~k 247 (383)
T PLN02486 168 VKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRLGYYK 247 (383)
T ss_pred HHHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHHHHhCCCC
Confidence 57899999999999999988899999999999999999999988876666688999999999999999999999999999
Q ss_pred ccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCChH
Q 027582 82 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDA 161 (221)
Q Consensus 82 p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~~ 161 (221)
|.+++++++|||+|+++|||||++||+|+|+|+|++|++||++|||||++.+++++++.|++|+++++|+||.+|.++++
T Consensus 248 p~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~ 327 (383)
T PLN02486 248 PALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDA 327 (383)
T ss_pred cceeccccccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCch
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999986678
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCCC
Q 027582 162 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP 217 (221)
Q Consensus 162 ~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~~ 217 (221)
++++++++|++|+++|++||+.|++.|+++|+|+|||+++++++.|++++..++++
T Consensus 328 ~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~~~~~~~~~~~~~~~~~ 383 (383)
T PLN02486 328 ELERIKKEYGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP 383 (383)
T ss_pred HHHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 89999999999999999999999999999999999999999999999999998763
No 2
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-56 Score=395.60 Aligned_cols=196 Identities=32% Similarity=0.492 Sum_probs=178.0
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC---
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--- 78 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n--- 78 (221)
++|+|+++||++....+ +++++|++.||+|||| |||+|++ |+||||.||+||+|||||||+|||
T Consensus 107 gel~r~~~fKdk~~~~~--~~~~~Gl~~YPvlqAA--------DILl~~a---~~VPVG~DQ~qHleLtRDiA~rfn~~y 173 (314)
T COG0180 107 GELERMTQFKDKSAKKG--ESIPIGLLTYPVLQAA--------DILLYQA---TLVPVGEDQDQHLELTRDIARRFNHLY 173 (314)
T ss_pred HHHHhhcCcchhhhccc--ccccccchhccHHHHH--------HhhhccC---CeeccCCCchHHHHHHHHHHHHHHhhc
Confidence 57888888888887664 4789999999999999 9999999 789999999999999999999999
Q ss_pred ---CCCccccccC--cccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582 79 ---YHKPALIESS--FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 153 (221)
Q Consensus 79 ---~~~p~~l~~~--~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l 153 (221)
+++|..+.+. ++|||+|+ +|||||++||+|+|+|+|++|++||++ |+||+ .+..++.+ +|+|++||+|+||
T Consensus 174 ~~~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~-~~td~-~~~~~~~~-~g~Pe~~~l~~~~ 249 (314)
T COG0180 174 GEVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIKK-AATDG-PTLIEYRK-GGKPEVCNLFEIY 249 (314)
T ss_pred CCccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHHHH-hccCC-CCccccCC-CCCCCcchHHHHH
Confidence 6899888876 99999998 899999999999999999999999999 99999 34444444 9999999999999
Q ss_pred hhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582 154 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 215 (221)
Q Consensus 154 ~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~ 215 (221)
.+|.. +++.+++++.|++|+++|++||+.|++.|+++|+||||||++++++ +++++|..+.
T Consensus 250 ~~~~~-~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~~il~~g~ 312 (314)
T COG0180 250 SAFFE-DDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLDDILRKGA 312 (314)
T ss_pred HHhcC-CCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhccC
Confidence 99974 6677799999999999999999999999999999999999999887 7999998764
No 3
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-54 Score=375.04 Aligned_cols=218 Identities=66% Similarity=1.103 Sum_probs=212.8
Q ss_pred CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC
Q 027582 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH 80 (221)
Q Consensus 1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~ 80 (221)
++++++.+|++++++.+||+++.++|.+.+|..||||||++|||.|+....|++|++|+.+||+|++++|||+|+|++++
T Consensus 180 ivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyFRmtRDvA~rlg~~ 259 (397)
T KOG2145|consen 180 IVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYFRMTRDVAPRLGYP 259 (397)
T ss_pred HHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCChHHHhhhhhhhhhCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCCh
Q 027582 81 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDD 160 (221)
Q Consensus 81 ~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~ 160 (221)
+|+.+++.++|.|+|.+.|||.|+|||+|||+|++++|++||.+|||+++++++++|++.||||+|++.|+||++|.+++
T Consensus 260 Kpali~stffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD 339 (397)
T KOG2145|consen 260 KPALIHSTFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDD 339 (397)
T ss_pred CcceeehhhchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred HhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCCCCCC
Q 027582 161 AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 220 (221)
Q Consensus 161 ~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~~~~~ 220 (221)
..+|++..+|.+|.|..|++|+.+.+.|.++++.+|+++++++++.|++++..+++ .|
T Consensus 340 ~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtde~ld~Fm~~r~l--~~ 397 (397)
T KOG2145|consen 340 DKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTDETLDAFMDPRKL--SF 397 (397)
T ss_pred HHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCcccC--CC
Confidence 99999999999999999999999999999999999999999999999999999855 55
No 4
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.2e-53 Score=383.55 Aligned_cols=199 Identities=39% Similarity=0.699 Sum_probs=186.4
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccc------cCCCCcccccCCCCchHHHHHHHHHHH
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS------GKDHLRCLIPCAIDQDPYFRMTRDVAP 75 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~------~~ad~~~~vpvG~DQ~~h~~laR~ia~ 75 (221)
..|++.+|++++++.+||+++.|+|+++||+|||| |||. +++ |+||||+||+||+||||++|+
T Consensus 157 ~~l~~~~t~~~l~r~~~f~~~~~~g~~~YP~lQaA--------Dil~~~~~~~~~~---~lvPvG~DQ~~h~~ltRdiA~ 225 (368)
T PRK12285 157 FELAKKVNFSELKAIYGFTGETNIGHIFYPATQAA--------DILHPQLEEGPKP---TLVPVGIDQDPHIRLTRDIAE 225 (368)
T ss_pred HHHHhhCcHHHHHHhhCCCCCCchhhhhhhHHHHH--------HHHhhcccccCCc---eEEEeccchHHHHHHHHHHHH
Confidence 35789999999999999988899999999999999 8877 666 789999999999999999999
Q ss_pred Hh----CCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHH
Q 027582 76 RI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK 151 (221)
Q Consensus 76 ~~----n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~ 151 (221)
|| |+++|.+++++++|||+| +|||||+++|+|+|+|+|++|++||++ ||||++.+.+++++.++||+++++++
T Consensus 226 r~n~~~gf~~P~~l~~~~lpgL~G--~KMSkS~~~s~I~L~D~p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~~~~v~~ 302 (368)
T PRK12285 226 RLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPDECVVYE 302 (368)
T ss_pred HHhhhcCCCCchhHhhhcccCCCC--CcCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCCcccccccccCCCCCcchHHH
Confidence 99 789999999999999999 699999999999999999999999999 99999998888899999999999999
Q ss_pred HHhhhc-CChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCC
Q 027582 152 YLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRP 215 (221)
Q Consensus 152 ~l~~~~-~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~ 215 (221)
|+++|. .+++++++++++|++|+++|++||+.|++.|+++|+|+|+|++++++ .|++++...+
T Consensus 303 ~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~~~-~~~~~~~~~~ 366 (368)
T PRK12285 303 LLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEARE-ILEKYLYDGK 366 (368)
T ss_pred HHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccc
Confidence 999987 46789999999999999999999999999999999999999999998 8888877653
No 5
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.3e-53 Score=381.60 Aligned_cols=198 Identities=25% Similarity=0.352 Sum_probs=180.9
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-- 79 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~-- 79 (221)
.+|+|+++|+++.+.. .++.++|+|+||+|||| |||++++ |+||||+||+||+||||+||+|||+
T Consensus 100 ~~l~r~~~~k~~~~~~--~~~~~~g~~~YP~lQaa--------Dil~~~~---divpvG~DQ~~h~elaRdia~~~n~~~ 166 (333)
T PRK00927 100 GELERMTQFKDKSAKQ--KENVSAGLFTYPVLMAA--------DILLYKA---DLVPVGEDQKQHLELTRDIARRFNNLY 166 (333)
T ss_pred HHHHhhhhHHHHHhcc--CCCCCcHhhhcHHHHHH--------HHHhcCC---CEEeeccchHHHHHHHHHHHHHhhhhc
Confidence 5788999999886542 46789999999999999 9999999 5799999999999999999999994
Q ss_pred ----CCccccc---cCcccCCCCCCCCcCCCCCC--CceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582 80 ----HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV 150 (221)
Q Consensus 80 ----~~p~~l~---~~~lp~L~g~~~KMSkS~~~--s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~ 150 (221)
++|..++ +++||||+|+++|||||+++ |+|+|+|+|++|++||++ |+||+..+.+++++.+++|+++|++
T Consensus 167 ~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~-a~td~~~~~~~~~~~~~~p~~~~l~ 245 (333)
T PRK00927 167 GEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLL 245 (333)
T ss_pred cccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHh-CCCCCCcccccccCCCCCCccccHH
Confidence 5777665 38999999987799999986 899999999999999999 9999988777889999999999999
Q ss_pred HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582 151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 215 (221)
Q Consensus 151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~ 215 (221)
+|+++|+ +.++++++++|.+|+++|++||+.||+.|+++|+|+|+||+++++| +|+++|..+.
T Consensus 246 ~~~~~~~--~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~~G~ 310 (333)
T PRK00927 246 TIYSALS--GESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILAEGA 310 (333)
T ss_pred HHHHHhC--CCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 9999995 6789999999999999999999999999999999999999999976 8999998764
No 6
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=4e-52 Score=373.27 Aligned_cols=197 Identities=27% Similarity=0.404 Sum_probs=176.8
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-- 79 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~-- 79 (221)
++++|++|+|++....|+.++.++|+++||+|||| |||+|++ |+||||+||+||+||||++|+|||+
T Consensus 102 ~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaa--------DIl~~~~---d~vpvG~DQ~~h~~laRdiA~~~n~~~ 170 (333)
T PRK12282 102 ARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAA--------DITAFKA---TLVPVGDDQLPMIEQTREIVRRFNSLY 170 (333)
T ss_pred HHHhhchHHHHHHhccCCCCCCcchhhcchHHHHH--------HHHhhCC---CEEEeccccHHHHHHHHHHHHHHhhhc
Confidence 57889999999877766667889999999999999 9999999 5799999999999999999999993
Q ss_pred CCcccc-------ccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHH
Q 027582 80 HKPALI-------ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 152 (221)
Q Consensus 80 ~~p~~l-------~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~ 152 (221)
.+|.++ ++++||||+|+ +|||||+++ +|+|+|+|++|++||++ |+||+.. .+++++++|+++|+++|
T Consensus 171 ~~~~~~~p~~~~~~~~~i~~L~g~-~KMSKS~~~-~I~L~D~pe~I~kKI~~-A~td~~~---~~~~~~~~~~~~~l~~~ 244 (333)
T PRK12282 171 GTDVLVEPEALLPEAGRLPGLDGK-AKMSKSLGN-AIYLSDDADTIKKKVMS-MYTDPNH---IRVEDPGKVEGNVVFTY 244 (333)
T ss_pred CCccccCchhcccCCCcccCCCCC-CcCCCCCCC-eeeeeCCHHHHHHHHHh-CcCCCCC---ccCCCCCCCCcChHHHH
Confidence 333322 46899999985 799999964 99999999999999999 9999852 45788999999999999
Q ss_pred HhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582 153 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 215 (221)
Q Consensus 153 l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~ 215 (221)
+++|.++++++++++++|.+|++++++||+.|++.|+++|+|+|+||++++++ +|+++|..+.
T Consensus 245 ~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~vl~~G~ 309 (333)
T PRK12282 245 LDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEILKAGS 309 (333)
T ss_pred HHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 99997567899999999999999999999999999999999999999999876 8999998764
No 7
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=1e-51 Score=375.02 Aligned_cols=196 Identities=22% Similarity=0.299 Sum_probs=174.6
Q ss_pred CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC-
Q 027582 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY- 79 (221)
Q Consensus 1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~- 79 (221)
+++|+|++|||++.+..| .++.++|+|+||+|||| |||+|++| +||||+||+||+||||+||+|||+
T Consensus 144 ~g~L~R~~q~K~k~~~~~-~~~~~~gll~YPvLqAA--------DILl~~a~---~VPVG~DQ~qH~eLtRdiA~rfN~~ 211 (389)
T PLN02886 144 IGWLNKMIQFKEKSRKAG-DENVGVGLLTYPVLMAS--------DILLYQAD---LVPVGEDQKQHLELTRDIAERVNNL 211 (389)
T ss_pred HHHHHhcchHHHHHHhcC-CCCCChHhhhChHHHHh--------hhhhcCCC---eEEEccchHHHHHHHHHHHHHHhhh
Confidence 368999999999988765 35689999999999999 99999995 799999999999999999999985
Q ss_pred -----------------CCccccc---cCcccCCCCCCCCcCCCCCC--CceecCCCHHHHHHHHhhccccCCcchhhhh
Q 027582 80 -----------------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELH 137 (221)
Q Consensus 80 -----------------~~p~~l~---~~~lp~L~g~~~KMSkS~~~--s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~ 137 (221)
+.|..++ +++||||+|+++|||||+++ |+|+|+|+|++|++||++ |+||+...++
T Consensus 212 y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~e~I~kKI~~-a~TD~~~~i~-- 288 (389)
T PLN02886 212 YGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKR-CKTDSFPGLE-- 288 (389)
T ss_pred ccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCHHHHHHHHhc-CCCCCCCCcc--
Confidence 3555554 35899999887899999974 899999999999999999 9999986443
Q ss_pred hhcCCCccchhHHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582 138 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 215 (221)
Q Consensus 138 ~~~~~~p~v~~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~ 215 (221)
++++++|+++|++.+|..|+ +.++++++++|. + +++++||+.|++.|+++|+||||||+++++| +|+++|.++.
T Consensus 289 ~~~p~~p~v~nl~~i~~~~~--~~~~eei~~~~~-~-~~~g~~K~~Lae~I~~~L~Pirer~~~l~~d~~~l~~iL~~Ga 364 (389)
T PLN02886 289 FDNPERPECNNLLSIYQLVT--GKTKEEVLAECG-D-MRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPSYLDSVLKEGA 364 (389)
T ss_pred CCCCCCcccccHHHHHHHcc--CCCHHHHHHHhc-C-CCCchHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 67889999999999999994 678999999996 4 7999999999999999999999999999986 8999998763
No 8
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-51 Score=368.02 Aligned_cols=193 Identities=19% Similarity=0.283 Sum_probs=171.8
Q ss_pred CccccccccHHHHHHhh-----CCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHH
Q 027582 1 MVKVAKCVTYNKVVGIF-----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 75 (221)
Q Consensus 1 ~~~l~r~~t~k~~~~~~-----g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~ 75 (221)
+++|+||+|||++.... |+.++.++|+|+||+|||| |||+|++ |+||||+||+||+||||++|+
T Consensus 103 ~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAA--------DIl~~~~---d~VpvG~DQ~qhleLtRdiA~ 171 (332)
T PRK12556 103 KGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAA--------DILLFQA---THVPVGKDQIQHIEIARDIAT 171 (332)
T ss_pred HHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhh--------hhhhccC---CEEEeccccHHHHHHHHHHHH
Confidence 36899999999987532 3445689999999999999 9999999 579999999999999999999
Q ss_pred HhC------CCCcccc---ccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccc
Q 027582 76 RIG------YHKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV 146 (221)
Q Consensus 76 ~~n------~~~p~~l---~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v 146 (221)
||| ++.|..+ +++++|||+| +|||||++| +|+|+|+|++|++||++ |+||+.. .+.+++|++
T Consensus 172 rfn~~yg~~f~~P~~~~~~~~~~l~gLdg--~KMSKS~~n-~I~L~D~p~~I~kKI~k-a~Td~~~-----~~~~~~p~~ 242 (332)
T PRK12556 172 YFNHTFGDTFTLPEYVIQEEGAILPGLDG--RKMSKSYGN-VIPLFAEQEKLRKLIFK-IKTDSSL-----PNEPKDPET 242 (332)
T ss_pred HHHHhccccCCCceeccccccccccCCCC--CCCCCCCCC-cccccCCHHHHHHHHHH-hccCCCc-----ccCCCCcch
Confidence 999 5778766 5799999999 599999974 89999999999999999 9999864 235789999
Q ss_pred hhHHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582 147 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 215 (221)
Q Consensus 147 ~~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~ 215 (221)
+|+++|+++|.+ .+++++++++|.+ +++|++||+.||+.|+++|+|+|+||++++++ +|+++|..+.
T Consensus 243 ~~l~~i~~~~~~-~~~~eei~~~y~~-~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~~~~il~~G~ 311 (332)
T PRK12556 243 SALFTIYKEFAT-EEEVQSMREKYET-GIGWGDVKKELFRVVDRELAGPREKYAMYMNEPSLLDEALEKGA 311 (332)
T ss_pred hHHHHHHHHHCC-chhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 999999999963 4679999999986 59999999999999999999999999999976 8999998763
No 9
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.1e-51 Score=371.51 Aligned_cols=193 Identities=19% Similarity=0.233 Sum_probs=168.2
Q ss_pred CccccccccHHHHHHhh---CCC--CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHH
Q 027582 1 MVKVAKCVTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 75 (221)
Q Consensus 1 ~~~l~r~~t~k~~~~~~---g~~--~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~ 75 (221)
+++|+|++|||++.... |++ +++++|+|+||+|||| |||+|++| +||||.||+||+||||+||+
T Consensus 102 ~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAA--------DILly~ad---~VPVG~DQ~qHlELaRdIA~ 170 (431)
T PRK12284 102 KGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAA--------DILMFNAH---KVPVGRDQIQHIEMARDIAQ 170 (431)
T ss_pred HHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHh--------hhhhcCCC---EEEEcchhHHHHHHHHHHHH
Confidence 36899999999886433 332 4579999999999999 99999995 79999999999999999999
Q ss_pred HhCC-------CCcccc---ccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCcc
Q 027582 76 RIGY-------HKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLE 145 (221)
Q Consensus 76 ~~n~-------~~p~~l---~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~ 145 (221)
|||+ +.|..+ ++++||||+| +|||||++ |+|+|+|+|++|++||++ |+||+..+ .++++|+
T Consensus 171 rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg--~KMSKS~~-n~I~L~Ds~~~I~kKI~~-A~TDs~~~-----~~~~~pe 241 (431)
T PRK12284 171 RFNHLYGGEFFVLPEAVIEESVATLPGLDG--RKMSKSYD-NTIPLFAPREELKKAIFS-IVTDSRAP-----GEPKDTE 241 (431)
T ss_pred HHhhhcCCcccCCCccccccccccccCCCC--ccccCCCC-CEeeecCCHHHHHHHHhc-CCCCCCCC-----CCCCCCC
Confidence 9994 345333 3589999998 69999996 599999999999999999 99998753 2468899
Q ss_pred chhHHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582 146 VDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 215 (221)
Q Consensus 146 v~~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~ 215 (221)
+||+++|+++|+ +.+++++++++|.+| ++|++||+.|++.|+++|+||||||+++++| +|++||.++.
T Consensus 242 ~snLl~i~~~~~-~~~~~eel~~~~~~g-~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~l~~iL~~Ga 311 (431)
T PRK12284 242 GSALFQLYQAFA-TPEETAAFRQALADG-IGWGDAKQRLFERIDRELAPMRERYEALIARPADIEDILLAGA 311 (431)
T ss_pred cchHHHHHHHhC-CcchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 999999999996 346799999999845 9999999999999999999999999999986 8999998763
No 10
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=6.4e-50 Score=358.52 Aligned_cols=197 Identities=37% Similarity=0.573 Sum_probs=168.9
Q ss_pred ccccccHHHHHHhhCCC-----CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582 4 VAKCVTYNKVVGIFGFT-----GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 78 (221)
Q Consensus 4 l~r~~t~k~~~~~~g~~-----~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n 78 (221)
|++.+|+.++.+..++. ++.++|+|+||+|||| |||+|++| +||||+||+||+||||++|+|||
T Consensus 96 l~~~~t~~~l~r~~~~k~k~~~~~~~~g~l~YP~lqaa--------Dil~~~~d---~vpvG~DQ~~h~elaRdia~r~n 164 (328)
T TIGR00233 96 LSCQVTFGELKRMTQFKDKSQAENVPIGLFSYPVLQAA--------DILLYQAD---LVPVGIDQDQHLELTRDLAERFN 164 (328)
T ss_pred HHccCCHHHHHhccCcchhccCCCCCchhhcchHHHHh--------hhhhcCCC---eeecccccHHHHHHHHHHHHHhh
Confidence 55666666666655443 3459999999999999 99999996 79999999999999999999999
Q ss_pred ------CCCcccccc---CcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcc-hhhhhhhcCCCccchh
Q 027582 79 ------YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-SVELHRKLGANLEVDI 148 (221)
Q Consensus 79 ------~~~p~~l~~---~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~-~~~~~~~~~~~p~v~~ 148 (221)
+++|..+++ +.||||+| +|||||++||+|+|+|+|++|++||++ |+||++. +..++...+++|++++
T Consensus 165 ~~~~~~f~~P~~l~~~~~~~l~gl~~--~KMSKS~~~s~I~L~D~~e~I~~KI~~-a~td~~~~~~~~~~~~~g~~~l~~ 241 (328)
T TIGR00233 165 KKFKNFFPKPESLISKFFPRLMGLSG--KKMSKSDPNSAIFLTDTPKQIKKKIRK-AATDGGRVTLFEHREKGGVPNLLV 241 (328)
T ss_pred hhcCcccCCChhhhccccCCCCCCCC--CcCCCCCCCCeEeecCCHHHHHHHHHh-cCCCCCCCcccCcCCCCCCchHHH
Confidence 688988875 55777776 699999999999999999999999999 9999874 3333445566777777
Q ss_pred HHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcC
Q 027582 149 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 214 (221)
Q Consensus 149 ~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~ 214 (221)
++.++.++..+++++++++++|.+|+++|++||+.|+++|+++|+|+|+||+++++++|+++|..+
T Consensus 242 i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~~~~~~l~~g 307 (328)
T TIGR00233 242 IYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEEILDKILEPG 307 (328)
T ss_pred HHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776556789999999999999999999999999999999999999999999999999875
No 11
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-49 Score=359.62 Aligned_cols=196 Identities=21% Similarity=0.251 Sum_probs=171.0
Q ss_pred CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC
Q 027582 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH 80 (221)
Q Consensus 1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~ 80 (221)
+++|.|++|||++....+..++.++|+++||+|||| |||+|++ ++||||+||+||+||||+||+|||..
T Consensus 101 ~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAA--------DILl~~a---~iVPVG~DQ~qHleLaRdIA~rfN~~ 169 (398)
T PRK12283 101 LGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSA--------DILIYRA---GLVPVGEDQVPHVEMTREIARRFNHL 169 (398)
T ss_pred HHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHH--------HHHhcCC---CEeeeccccHHHHHHHHHHHHHHHHh
Confidence 357899999999987543345689999999999999 9999999 47999999999999999999998852
Q ss_pred ----------------------------------------------------------------------------Cccc
Q 027582 81 ----------------------------------------------------------------------------KPAL 84 (221)
Q Consensus 81 ----------------------------------------------------------------------------~p~~ 84 (221)
.|..
T Consensus 170 yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 249 (398)
T PRK12283 170 YGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKIILPEPQA 249 (398)
T ss_pred cCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCCcccCCCcc
Confidence 2332
Q ss_pred --cccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCChHh
Q 027582 85 --IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAE 162 (221)
Q Consensus 85 --l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~~~ 162 (221)
..+++||||+| +|||||++ |+|+|+|+|++|++||++ |+||+.. +++..+++|++||+++|+++|+ +.++
T Consensus 250 ~~~~~~~I~gLdg--~KMSKS~~-n~I~L~Ds~~~I~kKI~~-a~TDs~~---~~~~~~g~Pe~~nl~~i~~~~~-~~~~ 321 (398)
T PRK12283 250 LLTEASKMPGLDG--QKMSKSYG-NTIGLREDPESVTKKIRT-MPTDPAR---VRRTDPGDPEKCPVWQLHQVYS-DEET 321 (398)
T ss_pred cccCCCcccCCCC--CcCCCCCC-CeeeCcCCHHHHHHHHHh-CCCCCcc---cccCCCCCCCcCHHHHHHHHhC-CChH
Confidence 22589999988 69999976 599999999999999999 9998753 3466679999999999999995 3457
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582 163 LEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 215 (221)
Q Consensus 163 ~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~ 215 (221)
++++.++|++|+++|++||+.|++.|+++|+|||||+.+++++ +|++||+.+.
T Consensus 322 ~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~ 376 (398)
T PRK12283 322 KEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGC 376 (398)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999876 8999998763
No 12
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-49 Score=342.60 Aligned_cols=196 Identities=22% Similarity=0.294 Sum_probs=177.6
Q ss_pred CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC-
Q 027582 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY- 79 (221)
Q Consensus 1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~- 79 (221)
+++|+||+|||+++++.+ ....++|+|+||+|||| |||+|++ ++||||.||.||+||+|.+|++||.
T Consensus 115 mg~L~rm~Q~KeKs~~~~-~~~~~vGLftYPvLqAA--------DILLYks---ThVPVGeDQsQHleL~r~lA~~fN~~ 182 (347)
T KOG2713|consen 115 MGRLARMPQWKEKSERFK-VGDVPVGLFTYPVLQAA--------DILLYKS---THVPVGEDQSQHLELARHLAQAFNKT 182 (347)
T ss_pred hHHHHhhHHHHhhhhhhc-cCccceeeecchhHhhh--------hHhhhcc---ccccCCccHHHHHHHHHHHHHHHhhh
Confidence 578999999999998664 35689999999999999 9999999 7899999999999999999999995
Q ss_pred ------CCccccc---cCcccCCCCCCCCcCCCCC--CCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchh
Q 027582 80 ------HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI 148 (221)
Q Consensus 80 ------~~p~~l~---~~~lp~L~g~~~KMSkS~~--~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~ 148 (221)
|.|..+. +.+|++|..|.+|||||++ .|+|+|+|+|+.|.+||+| |.||... ...|+++++|+|+|
T Consensus 183 Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~k-a~TD~~~--~vtYd~~~RpgvsN 259 (347)
T KOG2713|consen 183 YGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKK-AQTDNTS--GVTYDPANRPGVSN 259 (347)
T ss_pred ccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHH-Hhccccc--ceeeCCccccchhH
Confidence 6665543 6899999999999999997 4799999999999999999 9999654 55699999999999
Q ss_pred HHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC
Q 027582 149 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 215 (221)
Q Consensus 149 ~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~ 215 (221)
++++++.. ++.+++|+.+.++ + ++++++|..||++|++.|+|||++|+++.++ +|+++|+.+-
T Consensus 260 Llni~aaV--t~~s~eeV~~~~a-~-~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~~Ga 324 (347)
T KOG2713|consen 260 LLNIYAAV--TGKSIEEVVEESA-N-MSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLEEGA 324 (347)
T ss_pred HHHHHHHH--cCCCHHHHHHHhc-c-CCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHHHhH
Confidence 99999999 5778999999876 4 8999999999999999999999999999986 9999998763
No 13
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1e-46 Score=338.09 Aligned_cols=177 Identities=27% Similarity=0.420 Sum_probs=158.6
Q ss_pred cccccccHHHHHHh---hCCC-CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582 3 KVAKCVTYNKVVGI---FGFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 78 (221)
Q Consensus 3 ~l~r~~t~k~~~~~---~g~~-~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n 78 (221)
+|++.+|+.++.+. +++. ++.++|+|+||+|||| |||.|++| +||||.||+||++|||++|+|||
T Consensus 125 ~l~~~~~~~~l~r~~~~~~~~~~~~~~g~l~YP~lqaa--------Dil~~~ad---~vpvG~DQ~~h~~l~Rdia~~~n 193 (329)
T PRK08560 125 KLAKNTTLARARRSMTIMGRRMEEPDVSKLVYPLMQVA--------DIFYLDVD---IAVGGMDQRKIHMLAREVLPKLG 193 (329)
T ss_pred HHHhhccHHHHHHhhhhhcccCCCCCHHHHHHHHHHHH--------HHHHhCCC---EEEechhHHHHHHHHHHhhHhcC
Confidence 47889999998873 4443 3469999999999999 99999995 79999999999999999999999
Q ss_pred CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcC
Q 027582 79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE 158 (221)
Q Consensus 79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~ 158 (221)
+.+|.++++++||||+|+++|||||+|+|+|+|+|+|++|++||++ ||||++ +++.+++++|+++|..
T Consensus 194 ~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I~~KI~k-A~t~~~-----------~~~~n~v~~~~~~~~~ 261 (329)
T PRK08560 194 YKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRKIKK-AYCPPG-----------EVEGNPVLEIAKYHIF 261 (329)
T ss_pred CCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCCHHHHHHHHHh-ccCCCC-----------CcCCCcHHHHHHHHhh
Confidence 9999999999999999987799999988899999999999999999 999763 4666778889888753
Q ss_pred C------------------hHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582 159 D------------------DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 202 (221)
Q Consensus 159 ~------------------~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~ 202 (221)
+ .+++++++++|++|+++|++||+.||++|+++|+|||++|++-
T Consensus 262 ~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~ 323 (329)
T PRK08560 262 PRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLIEILEPVREYLEEG 323 (329)
T ss_pred ccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2 1579999999999999999999999999999999999999864
No 14
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=1.8e-45 Score=323.58 Aligned_cols=172 Identities=44% Similarity=0.697 Sum_probs=150.3
Q ss_pred ccccccHHHHHHhhCCC------CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHh
Q 027582 4 VAKCVTYNKVVGIFGFT------GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 77 (221)
Q Consensus 4 l~r~~t~k~~~~~~g~~------~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~ 77 (221)
|++.+|++++.+..+++ ++.++|+|+||+|||| |||++++ |+||||.||+||+|+||++|+||
T Consensus 93 l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lqaa--------Dil~~~~---~~vpvG~DQ~~h~~l~Rdia~r~ 161 (280)
T cd00806 93 LSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAA--------DILLYKA---CLVPVGIDQDPHLELTRDIARRF 161 (280)
T ss_pred HhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHHHh--------hhhhccC---CEEeeccccHHHHHHHHHHHHHh
Confidence 44555555555544443 3789999999999999 9999999 68999999999999999999999
Q ss_pred C------CCCcccccc--CcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhH
Q 027582 78 G------YHKPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIP 149 (221)
Q Consensus 78 n------~~~p~~l~~--~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~ 149 (221)
| +++|..+++ ++||||+|+++|||||+++|+|+|+|+|++|++||++ |+||+..+ ++++.+++|+++|+
T Consensus 162 n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~-a~td~~~~--~~~~~~~~~~~~~l 238 (280)
T cd00806 162 NKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMK-AATDGGRT--EHRRDGGGPGVSNL 238 (280)
T ss_pred ccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHh-ccCCCCCc--eecCCCCCCCcChH
Confidence 9 789999887 9999999987899999998899999999999999999 99999864 56899999999999
Q ss_pred HHHHhhhc-CChHhHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 027582 150 VKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 190 (221)
Q Consensus 150 ~~~l~~~~-~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~ 190 (221)
++||++|. .+.++++++ ++|+.|++++++||+.||+.|++
T Consensus 239 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~K~~lae~i~~ 279 (280)
T cd00806 239 VEIYSAFFNDDDEELEEI-DEYRSGGLGYGECKKLLAEAIQE 279 (280)
T ss_pred HHHHHHHhCCCHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHh
Confidence 99999875 344555555 89999999999999999999986
No 15
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.4e-44 Score=326.75 Aligned_cols=177 Identities=24% Similarity=0.386 Sum_probs=150.6
Q ss_pred cccccccHHHHHH---hhCCC--CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHh
Q 027582 3 KVAKCVTYNKVVG---IFGFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 77 (221)
Q Consensus 3 ~l~r~~t~k~~~~---~~g~~--~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~ 77 (221)
.+++.+|++++++ .+++. ++.++|+|+||+|||| ||+.+++| +||||.||+||++|||++|++|
T Consensus 166 ~la~~~tl~r~~r~~~~~~r~~~~~~~~g~l~YP~LQaa--------Dil~l~ad---ivpvG~DQ~~~~~LaRdia~~~ 234 (383)
T PTZ00126 166 DIARSFNITRIKRCSQIMGRSEGDEQPCAQILYPCMQCA--------DIFYLKAD---ICQLGMDQRKVNMLAREYCDKK 234 (383)
T ss_pred HHhccCCHHHHHhhhhhhccccCCCCCchhhhhhHHHhh--------hhhccCCC---EEEeCccHHHHHHHHHHHHHHh
Confidence 4678889998875 33443 3468999999999999 99999996 6999999999999999999999
Q ss_pred CC-CCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhh
Q 027582 78 GY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF 156 (221)
Q Consensus 78 n~-~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~ 156 (221)
|+ ++|.++++++||||+++++|||||++||+|+|+|+|++|++||++ ||||++.. ++|| ++.|++++
T Consensus 235 ~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~Dspe~I~kKI~k-A~t~p~~~-------~~np----v~~~~~~~ 302 (383)
T PTZ00126 235 KIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNRKIKK-AYCPPGVI-------EGNP----ILAYFKSI 302 (383)
T ss_pred CCCCCceeecccccccCCCCCCCCCcCCCCCeecCCCCHHHHHHHHHh-CcCCCCCC-------CCCc----chhhhhhc
Confidence 95 688888899999997556899999999999999999999999999 99987532 3455 44555542
Q ss_pred cC------------------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582 157 LE------------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 202 (221)
Q Consensus 157 ~~------------------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~ 202 (221)
.. +..++++++++|.+|.++|++||++||++|+++|+|||++|+.-
T Consensus 303 ~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~p~dlK~~lae~i~~~L~PIRe~~~~~ 366 (383)
T PTZ00126 303 VFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYLSGALHPGDLKPALAKYLNLMLQPVRDHFQNN 366 (383)
T ss_pred ccccccceeEeccccccCccCcCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 10 12589999999999999999999999999999999999999854
No 16
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.1e-44 Score=342.00 Aligned_cols=188 Identities=20% Similarity=0.291 Sum_probs=158.7
Q ss_pred ccccccHHHHHH---hhCCCC-CCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC
Q 027582 4 VAKCVTYNKVVG---IFGFTG-EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY 79 (221)
Q Consensus 4 l~r~~t~k~~~~---~~g~~~-~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~ 79 (221)
+++.+|+.++++ .+|+.+ +.++|+++||+|||| |||.+++| +||||.||+||+||||++|++||.
T Consensus 133 v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAA--------DIl~l~ad---ivpvG~DQ~qh~eLaRdia~~~g~ 201 (682)
T PTZ00348 133 IGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCA--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGR 201 (682)
T ss_pred HHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhh--------cccccCCC---EEEeCccHHHHHHHHHHHHHHhCC
Confidence 445555555544 355544 479999999999999 99999996 699999999999999999999995
Q ss_pred -CCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCc----cchhHHHHHh
Q 027582 80 -HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANL----EVDIPVKYLS 154 (221)
Q Consensus 80 -~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p----~v~~~~~~l~ 154 (221)
++|.++++++||||+|+++|||||+++|+|+|+|+|++|++||++ ||||+..........+++| +.+++++|++
T Consensus 202 ~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~Dspe~I~kKI~k-A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~ 280 (682)
T PTZ00348 202 KLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQ 280 (682)
T ss_pred CCCceecccccCcCCCCCCCcCCCCCCCCeecccCCHHHHHHHHHh-CCCCCCcCcccccCCCCCccccCCCCcHHHHHH
Confidence 588888899999999767899999998899999999999999999 9999863212224557777 7789999988
Q ss_pred hhcC--C----------hHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027582 155 FFLE--D----------DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 203 (221)
Q Consensus 155 ~~~~--~----------~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~ 203 (221)
++.. . ++++++++++|++|+++|++||++|+++|+++|+|||++|+.-.
T Consensus 281 ~~if~~~g~~~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l~~~L~PIRe~~~~~~ 341 (682)
T PTZ00348 281 CVVYARPGAVATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEVNALLEPVRQHFASNP 341 (682)
T ss_pred HHhccccchhcccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 8731 1 26799999999999999999999999999999999999998653
No 17
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=5.2e-40 Score=289.84 Aligned_cols=177 Identities=33% Similarity=0.522 Sum_probs=156.3
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC-
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH- 80 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~- 80 (221)
.+|+|++++++++++++.+++.++|+|+||+|||| ||+.+++| +||||.||++|++++|++|+|+|+.
T Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaa--------D~~~l~~~---~~~~G~DQ~~~~~l~rd~a~k~~~~~ 177 (292)
T PF00579_consen 109 FSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAA--------DILLLKAD---LVPGGIDQRGHIELARDLARKFNYKE 177 (292)
T ss_dssp HHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHH--------HHHHTTHS---EEEEEGGGHHHHHHHHHHHHHHTHHS
T ss_pred cchhhhhhhcccccccccccCcceeeEEccccccc--------ceeeeccc---cccccchHHHHHHHHHHHHhhhcccc
Confidence 35778888888777776556799999999999999 99999996 7999999999999999999999987
Q ss_pred ---CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchh-HHHHHhhh
Q 027582 81 ---KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI-PVKYLSFF 156 (221)
Q Consensus 81 ---~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~-~~~~l~~~ 156 (221)
+|..++++++|+|+|. +|||||++|++|+|+|++++|++||++ |+|++.. +.++....++.+++ ++.++..+
T Consensus 178 ~~~~p~~l~~~~l~~l~G~-~KMSKS~~ns~I~L~d~~~~i~~Ki~~-a~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~ 253 (292)
T PF00579_consen 178 IFPKPAGLTSPLLPGLDGQ-KKMSKSDPNSAIFLDDSPEEIRKKIKK-AFCDPDR--ENPRLLKGRPFISPFLIERLEAF 253 (292)
T ss_dssp TSSS-EEEEETCBBSTTSS-SBTTTTTTGGS-BTTTTHHHHHHHHHH-SHTSTTS--HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccCchheeeccccccCCc-cccCccCCccEEEEeccchhHHHHHHH-HhhCCCc--ccccccccCCCCCHHHHHHHHHh
Confidence 9999999999999995 499999999999999999999999999 9999987 44567778899998 88888887
Q ss_pred cCCh--HhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhH
Q 027582 157 LEDD--AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193 (221)
Q Consensus 157 ~~~~--~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~ 193 (221)
..+. .+++++.++|.+|.+|++++|++++++++++|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 254 HGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp HHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 5322 368999999999999999999999999999885
No 18
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=5.1e-38 Score=274.83 Aligned_cols=156 Identities=27% Similarity=0.354 Sum_probs=136.5
Q ss_pred cccccccHHHHHHhhCC------CCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHH
Q 027582 3 KVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 76 (221)
Q Consensus 3 ~l~r~~t~k~~~~~~g~------~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~ 76 (221)
++++.+++.++.+..++ .++.++|+|+||+|||| ||+.+++ |+||||.||++|++++|++|+|
T Consensus 106 ~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaa--------Di~~l~~---~l~~~G~DQ~~~i~~~rd~a~r 174 (269)
T cd00805 106 RLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAY--------DFVYLDV---DLQLGGSDQRGNITLGRDLIRK 174 (269)
T ss_pred HHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh--------hHHHHhC---CeeEecHHHHHHHHHHHHHHHH
Confidence 46777777777764432 35689999999999999 9999999 5799999999999999999999
Q ss_pred hCCCCccccccCcccCCCCCCCCcCCCCCCCc-eecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhh
Q 027582 77 IGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 155 (221)
Q Consensus 77 ~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~-I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~ 155 (221)
||+.+|..+++++||||+| +|||||++|+. |++.|+|++|++||++ |+|| ++.+++.++.+
T Consensus 175 ~~~~~~~~l~~~ll~~l~G--~KMSKS~~~~~~i~l~dsp~~i~~Ki~~-a~~~---------------~v~~~l~~~~~ 236 (269)
T cd00805 175 LGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDP---------------DVLEFLKLFTF 236 (269)
T ss_pred hCCCCcEEEeeccccCCCC--CcccCCCCCcccccCCCCHHHHHHHHHc-CCcH---------------HHHHHHHHHHc
Confidence 9999999999999999999 59999999866 7999999999999999 9996 24566666666
Q ss_pred hcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 027582 156 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 190 (221)
Q Consensus 156 ~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~ 190 (221)
+ +.++++|++++|.+|.+ ++++|+.||++|++
T Consensus 237 ~--~~~~~eel~~~~~~~~~-~~~~K~~la~~i~~ 268 (269)
T cd00805 237 L--DYEEIEELEEEHAEGPL-PRDAKKALAEELTK 268 (269)
T ss_pred C--CHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Confidence 5 67899999999998876 99999999999986
No 19
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-37 Score=264.83 Aligned_cols=182 Identities=24% Similarity=0.301 Sum_probs=155.8
Q ss_pred cccccccHHHHHHh--hC--CCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582 3 KVAKCVTYNKVVGI--FG--FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 78 (221)
Q Consensus 3 ~l~r~~t~k~~~~~--~g--~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n 78 (221)
++++.+|-++.++. .+ ..++..++.++||+|||+ |++.+++|+ +.+|+|||..+.+||++++.+|
T Consensus 134 rl~~~~~~hdak~agaevvkqve~plls~llYP~MQal--------De~~L~vD~---qfgGvDQRKIf~~A~eylp~l~ 202 (360)
T KOG2144|consen 134 RLSSNVTQHDAKKAGAEVVKQVENPLLSGLLYPGMQAL--------DEFYLEVDA---QFGGVDQRKIFVLAEEYLPDLG 202 (360)
T ss_pred HHHhhccHhHHHHhhhhHHHhhcchhhhhhhhhhHHHh--------hHHHHhhhH---HhcCccHHHHHHHHHHhhhhhC
Confidence 45666666666653 22 246688999999999999 999999984 7999999999999999999999
Q ss_pred CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchh----HHHHHh
Q 027582 79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI----PVKYLS 154 (221)
Q Consensus 79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~----~~~~l~ 154 (221)
+.+|.++++||||||++ ++|||||+++|.|+|.|+|++|.+||++ |||.++.. ++|++.+. +|.++.
T Consensus 203 ykKrihLmnpMvPGL~q-~~KMSsSd~~SkIdllD~~~~V~kKI~k-AfCePg~v-------e~Ng~L~fvkyvvfP~~~ 273 (360)
T KOG2144|consen 203 YKKRIHLMNPMVPGLAQ-GEKMSSSDPLSKIDLLDEPADVNKKIKK-AFCEPGNV-------EGNGCLSFVKYVVFPIFE 273 (360)
T ss_pred cccceeecCCCCccccc-cCccccCCcccccccccCHHHHHHHHHH-hcCCCCCc-------CCCcHHHHHHHHHhhhHH
Confidence 99999999999999996 4899999999999999999999999999 99998753 57887753 445554
Q ss_pred hhcC-------------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 027582 155 FFLE-------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 204 (221)
Q Consensus 155 ~~~~-------------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~ 204 (221)
.+.. +..++||++++|.+|.+||+|||+.|+.+|+++|+|||+.++..-+
T Consensus 274 e~~~~~i~r~ek~GG~~tf~syed~e~~y~~~~lhPgDLK~~l~~alN~lL~~ir~~~~~~~~ 336 (360)
T KOG2144|consen 274 EFGVEVIDRPEKFGGNKTFKSYEDIEKDYEEGELHPGDLKKGLEKALNELLQPIREEFSNWPE 336 (360)
T ss_pred hcCceeecchhhcCCcchhHHHHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 4321 2478999999999999999999999999999999999999988544
No 20
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=5.9e-35 Score=256.01 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=130.1
Q ss_pred ccccccHHHHHHhhCCC----CCCcccccchhhhhccCCCCCCCCcccccCCCCcc-cccCCCCchHHHHHHHHHHHHhC
Q 027582 4 VAKCVTYNKVVGIFGFT----GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRIG 78 (221)
Q Consensus 4 l~r~~t~k~~~~~~g~~----~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~-~vpvG~DQ~~h~~laR~ia~~~n 78 (221)
+++.+++.++.+..++. ++.++|+|+||+|||| |||.++++..| +||||.||+||+++||++|+|||
T Consensus 107 l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaa--------D~l~l~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n 178 (273)
T cd00395 107 LGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAA--------DFLLLNTTEGCDIQPGGSDQWGNITLGRELARRFN 178 (273)
T ss_pred HHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHH--------HHHHHhcccCCcEEEecHHHHHHHHHHHHHHHHhC
Confidence 56677777776654432 3689999999999999 99999885555 89999999999999999999998
Q ss_pred -CCCccccccCcccCCCCCCCCcCCCCCCCc--eecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhh
Q 027582 79 -YHKPALIESSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 155 (221)
Q Consensus 79 -~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~--I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~ 155 (221)
+++|..+++|+||||+| .|||||++|+. |+++|+|++|++||++ |+ .++++.|+++
T Consensus 179 ~~~~p~~l~~p~l~~l~G--~KMSKS~~~~i~l~~~~dsp~~i~~ki~~-a~------------------d~~v~~~~~~ 237 (273)
T cd00395 179 GFTIAEGLTIPLVTKLDG--PKFGKSESGPKWLDTEKTSPYEFYQFWIN-AV------------------DSDVINILKY 237 (273)
T ss_pred CCCCCeEEeeccccCCCC--CcCCCCCCCCccccccCCCHHHHHHHHHc-cc------------------HhHHHHHHHH
Confidence 57898888999999999 49999998743 4479999999999999 85 2556788888
Q ss_pred hcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 027582 156 FLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 190 (221)
Q Consensus 156 ~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~ 190 (221)
|+. +.+++++|.+++.+| .+++++|+.||+.|++
T Consensus 238 ~t~~~~~ei~~i~~~~~~~-~~~~~~K~~La~~i~~ 272 (273)
T cd00395 238 FTFLSKEEIERLEQEQYEA-PGYRVAQKTLAEEVTK 272 (273)
T ss_pred HcCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHh
Confidence 763 566777777777656 4789999999999986
No 21
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.5e-33 Score=266.34 Aligned_cols=177 Identities=15% Similarity=0.182 Sum_probs=152.5
Q ss_pred CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC
Q 027582 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH 80 (221)
Q Consensus 1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~ 80 (221)
|++++|.+|++++++.+| .+..++|+++||+|||+ ||+.+++|+ +.+|+|||..++|||+++++.+
T Consensus 472 v~~ia~~~tl~r~~r~~g-~~~~~~s~~iYP~MQ~~--------Di~~L~~di---~~gG~DQRki~mlAre~~~~~~-- 537 (682)
T PTZ00348 472 VIGIARKNLLSHVEELYG-GELRNAGQVIAALMRVA--------TALMLSASH---VISTSLDGGINEFAREYTKGRI-- 537 (682)
T ss_pred HHHHHHhccHHHHHHHhc-CCcccHHHHHHHHHHHH--------HHHhcCCCe---eecChhHHHHHHHHHHhccccc--
Confidence 467899999999999986 45569999999999999 999999974 7999999999999999999755
Q ss_pred CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhc---
Q 027582 81 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--- 157 (221)
Q Consensus 81 ~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~--- 157 (221)
+|..++++++|+|.++..+|++|+++|+|+|.|++++|++||++ |||+++. .+||.++.+-.++..+.
T Consensus 538 ~~~~~~~~~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki~k-A~Cpp~~--------~~Npvl~~~~y~~~~~~~~~ 608 (682)
T PTZ00348 538 ECIQALEGRVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNE--------EANPVISVAQHLLAQQGALS 608 (682)
T ss_pred cchhhcCCCCccccccccccCCCCCCCeeeecCCHHHHHHHHHh-CCCCCCC--------CCCcHHHHHHHHhcCCCeEE
Confidence 45556788999999777899999889999999999999999999 9998853 36998765433322221
Q ss_pred -C---------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 027582 158 -E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 200 (221)
Q Consensus 158 -~---------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~ 200 (221)
+ ...+++||+++|.+|++||+|||.+++++|+++|+|+|++++
T Consensus 609 i~R~e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 609 IERGEANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred EecccccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 136899999999999999999999999999999999999997
No 22
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=6e-33 Score=255.29 Aligned_cols=166 Identities=23% Similarity=0.254 Sum_probs=139.3
Q ss_pred ccccccHHHHHH------hhCCCCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHH
Q 027582 4 VAKCVTYNKVVG------IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDV 73 (221)
Q Consensus 4 l~r~~t~k~~~~------~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~i 73 (221)
+.+.+|++++.+ +++..++.++|+|+||+|||| |++.+ +++ ++|||.||++|++++||+
T Consensus 140 v~~~~~v~~m~~~~~~k~r~~~~~~is~~ef~Yp~LQa~--------D~l~l~~~~~~~---i~~gG~DQ~~ni~~grdl 208 (408)
T PRK05912 140 LGKHFTVNRMLERDDFKKRLREGQGISFTEFLYPLLQGY--------DFVALNKRYGCD---LQLGGSDQWGNILSGRDL 208 (408)
T ss_pred HhhhccHHHHhhcchHHHHhccCCCCchhhhhhHHHHHh--------hHHHHhccCCCC---EEeccHHHHHHHHHHHHH
Confidence 567777777754 333235689999999999999 99998 774 799999999999999999
Q ss_pred HHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582 74 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV 150 (221)
Q Consensus 74 a~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~ 150 (221)
|+|+|..++..++.|+|||++| +|||||+ +|+|+|+| +|+++++||++ + + ++++++++
T Consensus 209 a~r~~~~~~~~l~~plL~~~~G--~KMsKS~-~naI~L~d~~tsp~~i~qki~~-~-~--------------D~~v~~~l 269 (408)
T PRK05912 209 QRRYGGKPQFGLTMPLLTGLDG--KKMGKSE-GNAVWLDEEKTSPYEMYQKWMN-I-S--------------DADVWRYL 269 (408)
T ss_pred HHHhCCCCeEEEecCCcCCCCC--CcccCCC-CCceeCCCCCCCHHHHHHHHhc-C-C--------------hHHHHHHH
Confidence 9999987777788999999998 7999998 56999999 99999999999 5 2 23455555
Q ss_pred HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582 151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 202 (221)
Q Consensus 151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~ 202 (221)
.++.++ +.+++++++++|++|. +++++|+.||+.|+++++...+..+..
T Consensus 270 ~~~t~~--~~~ei~~l~~~~~~g~-~~~~~Kk~LA~~v~~~lhg~~~~~~a~ 318 (408)
T PRK05912 270 KLLTFL--SLEEIEELEEELAEGP-NPREAKKVLAEEITALVHGEEAAEAAE 318 (408)
T ss_pred HHHhcC--CHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 555554 6788999999998786 999999999999999999987765543
No 23
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=99.97 E-value=6.1e-32 Score=248.63 Aligned_cols=166 Identities=19% Similarity=0.197 Sum_probs=139.5
Q ss_pred ccccccHHHHHH------hhCCCCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHH
Q 027582 4 VAKCVTYNKVVG------IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDV 73 (221)
Q Consensus 4 l~r~~t~k~~~~------~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~i 73 (221)
+.+++|++++.+ +++..+++++|+|+||+|||| |++.+ +++ ++|||.||++|++++||+
T Consensus 138 v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~--------D~~~l~~~~~~~---iq~gG~DQ~~ni~~grdl 206 (410)
T PRK13354 138 YGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAY--------DFVHLNRKEDVD---LQIGGTDQWGNILMGRDL 206 (410)
T ss_pred HHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhh--------hHHHHhccCCCC---EEEecHHHHHHHHHHHHH
Confidence 455556665543 443235678999999999999 99998 774 689999999999999999
Q ss_pred HHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCC---HHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582 74 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS---AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV 150 (221)
Q Consensus 74 a~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~---p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~ 150 (221)
|+|+|..+|..++.|+|+|++| .|||||.+ ++|+|+|+ |+++++||++ + +| +.++
T Consensus 207 ~~r~~~~~~~~lt~PlL~g~dG--~KMsKS~~-naI~L~d~~tsp~~i~qki~~-~-~D-----------------~~v~ 264 (410)
T PRK13354 207 QRKLEGEEQFGLTMPLLEGADG--TKMGKSAG-GAIWLDPEKTSPYEFYQFWMN-I-DD-----------------RDVV 264 (410)
T ss_pred HHHhCCCCceEeccCCccCCCC--CccCCCCC-CceeccCCCCCHHHHHHHHHc-C-Ch-----------------HHHH
Confidence 9999998898889999999999 49999986 49999999 9999999999 5 11 2346
Q ss_pred HHHhhhcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027582 151 KYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 203 (221)
Q Consensus 151 ~~l~~~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~ 203 (221)
.|+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+...
T Consensus 265 ~~l~~~t~l~~~ei~~l~~~~~~~~-~~~~~Kk~LA~~v~~~vhg~~~~~~a~~ 317 (410)
T PRK13354 265 KYLKLFTDLSPDEIDELEAQLETEP-NPRDAKKVLAEEITKFVHGEEAAEEAEK 317 (410)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 78888864 6789999999999874 5999999999999999999888766543
No 24
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=99.90 E-value=5.2e-24 Score=194.39 Aligned_cols=148 Identities=22% Similarity=0.158 Sum_probs=120.8
Q ss_pred cccccccHHHHHHhhCC----CCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582 3 KVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 78 (221)
Q Consensus 3 ~l~r~~t~k~~~~~~g~----~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n 78 (221)
++++.+|++++.++.++ .++.++++|+||+|||+ |++.+++| ++|+|.||++|++.+|++|+++|
T Consensus 134 ~~~~~~tv~~m~~~~~~~~R~~~~is~~ef~YpllQa~--------D~~~l~~d---i~~gG~DQ~~ni~~g~dLar~~~ 202 (377)
T TIGR00234 134 DLGKIFSVNRMLRRDAFSSRLERGISLSEFIYPLLQAY--------DFVYLNVD---LQIGGSDQWGNIRKGRDLIRRNL 202 (377)
T ss_pred HHhCceEHHHHHcccHHHHHHhcCCCchhhhhHHHHHH--------HHHHHcCC---eeEecchhHHHHHHHHHHHHHhc
Confidence 36788888888876543 24689999999999999 99999996 69999999999999999999999
Q ss_pred CCCccccccCcccCCCCCCCCcCCCCC----------CCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchh
Q 027582 79 YHKPALIESSFFPALQGETGKMSASDP----------NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI 148 (221)
Q Consensus 79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~----------~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~ 148 (221)
...+..+..+++++++| .|||||.+ +++|++.|+|+++.+||++ |||+..
T Consensus 203 ~~~~~~~t~pLl~~~dg--~KmgKS~~~~i~l~~~~~~~~i~~~d~~D~~~~Ki~k-~~t~~~----------------- 262 (377)
T TIGR00234 203 PSLGFGLTVPLLTPADG--EKMGKSGGGAVSLDEGKYDFYQFWINTPDEDVKKILK-LFTFLG----------------- 262 (377)
T ss_pred CCCceeeceeeecCCCC--CCccCCCCCcccCCccHhhhhhhhcCCcHHHHHHHHH-HcCCCc-----------------
Confidence 76666677899999997 69999953 3678888889999999999 999754
Q ss_pred HHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHH
Q 027582 149 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH 195 (221)
Q Consensus 149 ~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pi 195 (221)
.+++++|.+ ..+ -++...|..+|..+++.++.-
T Consensus 263 -----------~~ei~~l~~--~~~-~~~~~~q~~la~ei~~~vhg~ 295 (377)
T TIGR00234 263 -----------LEEIEALVE--LKG-PSPREVKENLAKEITKYVHGE 295 (377)
T ss_pred -----------HHHHHHHHH--hcc-cCHHHHHHHHHHHHHHHhcCH
Confidence 235566644 223 578889999998888887653
No 25
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=4.7e-20 Score=168.67 Aligned_cols=166 Identities=22% Similarity=0.218 Sum_probs=127.1
Q ss_pred cccccccHHHHHHhhC------CCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHH
Q 027582 3 KVAKCVTYNKVVGIFG------FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 76 (221)
Q Consensus 3 ~l~r~~t~k~~~~~~g------~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~ 76 (221)
++.+++|++++.++.. ...++++.+|+||+|||+ |++.+++| +..+|.||+.++.++|++++|
T Consensus 135 ~~g~~~sv~rml~~d~~~~R~~~~~~is~~Ef~YpLmQay--------D~~~L~~d---lq~GG~DQ~~ni~~grdl~rr 203 (401)
T COG0162 135 DVGKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAY--------DFVYLNKD---LQLGGSDQWGNILAGRDLIRR 203 (401)
T ss_pred HHHhHccHHHHHHhhhHHHHhccCCCCchhhhhhHHHHHH--------HHHHHccc---hhcCChHHHHHHHHHHHHHHH
Confidence 4568889998887532 223589999999999999 99999997 589999999999999999999
Q ss_pred hCCCCccccccCcccCCCCCCCCcCCCCCCCceec-CCC--HHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582 77 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYV-TDS--AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 153 (221)
Q Consensus 77 ~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L-~D~--p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l 153 (221)
+|..++.++++|+|+|++| +|||||..| ++++ .+. |-++.+++++ . + . ..+..|+
T Consensus 204 ~g~~~~~~lt~PLL~~ldG--~KmgKs~~~-a~~~~s~~~Sp~~~yq~~~~-i--~----D------------~~~~~~~ 261 (401)
T COG0162 204 LGQKKVVGLTTPLLTGLDG--KKMGKSEGG-AVWLDSEKTSPYDFYQYWMN-I--E----D------------ADVKRFL 261 (401)
T ss_pred hCCCCeEEEEeccccCCCC--CcccccCCC-ceEccCCCCCcHhhhhcHhc-C--c----H------------HHHHHHH
Confidence 9999999999999999999 499999865 3333 333 5666666666 2 0 0 1223444
Q ss_pred hhhcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582 154 SFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 202 (221)
Q Consensus 154 ~~~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~ 202 (221)
..++. ..+++++|.+....+. ++.+.|+.||..++...+.-...++.+
T Consensus 262 ~~~t~l~~~eI~~i~~~~~~~~-~~r~~k~~LA~e~~~~~hG~~~a~~a~ 310 (401)
T COG0162 262 KLLTFLSLEEIEEIEKYVLKGP-EPREAKKLLAKEVTKLVHGEEAAEAAE 310 (401)
T ss_pred HHhCcCChHHHHHHHHHhhcCC-ChHHHHHHHHHHhhHhhcCHHHHHHHH
Confidence 44432 2368888888777665 888999999999999888866555543
No 26
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.96 E-value=3.2e-10 Score=89.87 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=57.0
Q ss_pred hhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC-CccccccCcccCCCCCCCCcCCCC
Q 027582 30 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASD 104 (221)
Q Consensus 30 YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~-~p~~l~~~~lp~L~g~~~KMSkS~ 104 (221)
||+.|+| |++.+.....+++++|.||.+|++..+++++++|.. +|..++.++|.+.+| +|||||.
T Consensus 78 y~~~~~a--------~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g--~KmSks~ 143 (143)
T cd00802 78 YMFLQAA--------DFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADG--TKMSKSK 143 (143)
T ss_pred HHHHHHH--------HHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCC--CcCCCCC
Confidence 9999999 998877744457999999999999999999999854 688888999999876 6999994
No 27
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=7.1e-09 Score=93.97 Aligned_cols=161 Identities=15% Similarity=0.099 Sum_probs=111.0
Q ss_pred ccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccc-cCCCCcccccCCCCchHHHHHHHHHHHHhCCC--
Q 027582 4 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS-GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-- 80 (221)
Q Consensus 4 l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~-~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~-- 80 (221)
+..|..-..++.+..-.++.++.+|+|-+|||. |.+. |+..=.|++.+|.||+.|++.+-|+.+|+-..
T Consensus 185 vgsMLar~SV~~RLes~~GlSftEFtYQ~lQAY--------Dfy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~ 256 (467)
T KOG2623|consen 185 VGSMLARDSVKSRLESPNGLSFTEFTYQLLQAY--------DFYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQA 256 (467)
T ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHH--------hHHHHHHhcCeeEEecccccccccchHHHHHHHhccccc
Confidence 334444444555554355689999999999999 9884 33322258899999999999999999998642
Q ss_pred CccccccCcccCCCCCCCCcCCCCCCCceecCCC---HHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhc
Q 027582 81 KPALIESSFFPALQGETGKMSASDPNSAIYVTDS---AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL 157 (221)
Q Consensus 81 ~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~---p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~ 157 (221)
.+.-+..|+|.+-+| .|..||.+| +|||+-+ |-.+++-.-+ +- +-+++-++.++.++
T Consensus 257 ~vfGlT~PLlTsstG--~KlGKSaGn-AvWLdp~~tspy~lYQfF~~-~p---------------Dd~v~k~LklfTfl- 316 (467)
T KOG2623|consen 257 FVFGLTFPLLTSSTG--AKLGKSAGN-AVWLDPSKTSPYHLYQFFAS-LP---------------DDDVEKFLKLFTFL- 316 (467)
T ss_pred ceeeeeeeeEecCcc--hhhccCCCc-eEEecCccCCcHHHHHHHHh-Cc---------------hhHHHHHHHHHhcC-
Confidence 344466788888888 699999987 9999864 8888887777 31 11233333444444
Q ss_pred CChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHH
Q 027582 158 EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 194 (221)
Q Consensus 158 ~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~p 194 (221)
+-+++++|.+.-.+. -...-.-+.||+.+..+++.
T Consensus 317 -~l~eI~~I~~~H~k~-P~~r~aQ~~LA~eVTr~VHG 351 (467)
T KOG2623|consen 317 -PLEEIKQILEEHRKE-PSQRIAQKLLAAEVTRMVHG 351 (467)
T ss_pred -CHHHHHHHHHHHhcC-hhhhhHHHHHHHHHHHHHcc
Confidence 455677666655432 23444567788888888776
No 28
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.37 E-value=3.3e-07 Score=79.21 Aligned_cols=104 Identities=12% Similarity=0.015 Sum_probs=81.5
Q ss_pred cccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccc
Q 027582 5 AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPAL 84 (221)
Q Consensus 5 ~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~ 84 (221)
.|...++++.+..-. .+ -|..+|++.+++ |...++. ++|+.|.|+..|...-+.+++.||.+.|..
T Consensus 84 ~r~~~y~~~~~~L~~-~g--dg~ptY~~a~~v--------DD~~~~i---thViRG~D~~~~t~~q~~l~~aLg~~~p~~ 149 (239)
T cd00808 84 ERLEIYRKYAEKLLE-KG--DGFPTYHLANVV--------DDHLMGI---THVIRGEEHLSSTPKQILLYEALGWEPPKF 149 (239)
T ss_pred CCHHHHHHHHHHHHH-cC--CCCcccccHHHH--------hHHhcCC---CEEEEChhhhhChHHHHHHHHHcCCCCCce
Confidence 355566666554311 11 389999999999 8888988 789999999999999999999999999998
Q ss_pred cccCcccCCCCCCCCcCCCCCCCceecC----CCHHHHHHHHhh
Q 027582 85 IESSFFPALQGETGKMSASDPNSAIYVT----DSAKAIKNKINK 124 (221)
Q Consensus 85 l~~~~lp~L~g~~~KMSkS~~~s~I~L~----D~p~~I~~KI~k 124 (221)
.+.+++++.+| .||||+..+.+|.-. -+|+.|..-+..
T Consensus 150 ~h~pll~~~~g--~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 150 AHLPLILNPDG--KKLSKRKGDTSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred EeeccccCCCC--CcccCCCCCccHHHHHHCCCCHHHHHHHHHH
Confidence 88899999988 699999876444322 347777666655
No 29
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=97.83 E-value=3.2e-05 Score=73.69 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=48.0
Q ss_pred ccccCCCCchH-HHHHHHHHHH-HhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 55 CLIPCAIDQDP-YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 55 ~~vpvG~DQ~~-h~~laR~ia~-~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
++.|.|.||.. +..+++.+++ .+|.+.|..+.+.++..-+| +|||||.+| .|.+.|
T Consensus 236 d~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G--~KMSKSkGN-~i~~~d 293 (510)
T PRK00750 236 DFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKG--EKISKSKGN-VITIED 293 (510)
T ss_pred CEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCC--CcccccCCC-ccCHHH
Confidence 46899999999 9999999999 99998898887777776555 799999875 887765
No 30
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=97.15 E-value=0.00049 Score=59.26 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=63.8
Q ss_pred chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCc
Q 027582 29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 108 (221)
Q Consensus 29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~ 108 (221)
.||..+=|.+. .|.+ .+. |+|..|.|+..+...-+.+++.+|.++|...|.++|.+.+| +||||++.+.+
T Consensus 93 g~p~Y~la~vv----DD~~-~gI---ThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g--~KLSKr~~~~~ 162 (230)
T cd00418 93 GYPLYNFVHPV----DDAL-MGI---THVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDG--TKLSKRKLNTT 162 (230)
T ss_pred CCccccccccc----cccc-cCC---CEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCC--CCccCcCCCcC
Confidence 45555555322 2554 444 68999999999999999999999999999999999999887 69999987544
Q ss_pred eecC----CCHHHHHHHHhh
Q 027582 109 IYVT----DSAKAIKNKINK 124 (221)
Q Consensus 109 I~L~----D~p~~I~~KI~k 124 (221)
|.=. -.|+.|..-+..
T Consensus 163 i~~~r~~G~~p~ai~~~l~~ 182 (230)
T cd00418 163 LRALRRRGYLPEALRNYLAL 182 (230)
T ss_pred HHHHHHCCCcHHHHHHHHHH
Confidence 4222 346666655554
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=97.01 E-value=0.00037 Score=63.60 Aligned_cols=59 Identities=27% Similarity=0.373 Sum_probs=46.9
Q ss_pred cCCCCcccccCCCCchHH---HHHHHHHHH-HhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 49 GKDHLRCLIPCAIDQDPY---FRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~h---~~laR~ia~-~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
++.| +-|+|.||..| +...+.+|+ .||.+.|..+...++- +.|. +|||||.+| .|.+.|
T Consensus 226 l~Vd---~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~-l~gg-~KMSKSkGn-vI~~~d 288 (353)
T cd00674 226 LGVD---FEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIG-LKGG-GKMSSSKGN-VITPSD 288 (353)
T ss_pred cCCC---EEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEE-eCCC-CccCCCCCC-cCCHHH
Confidence 5554 68999999999 999999999 9999888776666653 5553 699999875 777654
No 32
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.004 Score=57.77 Aligned_cols=128 Identities=16% Similarity=0.094 Sum_probs=82.1
Q ss_pred HHHhCCCCccccc--cCc-ccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcc-----hhhh-hhhcCCCc
Q 027582 74 APRIGYHKPALIE--SSF-FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-----SVEL-HRKLGANL 144 (221)
Q Consensus 74 a~~~n~~~p~~l~--~~~-lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~-----~~~~-~~~~~~~p 144 (221)
.+.++..-|.+.. ..+ =-+..| .+||+|+++|.|.+.+.+..|..|++. +||.... .+.+ .......+
T Consensus 207 ~~~~~lt~PLL~~ldG~KmgKs~~~--a~~~~s~~~Sp~~~yq~~~~i~D~~~~-~~~~~~t~l~~~eI~~i~~~~~~~~ 283 (401)
T COG0162 207 KKVVGLTTPLLTGLDGKKMGKSEGG--AVWLDSEKTSPYDFYQYWMNIEDADVK-RFLKLLTFLSLEEIEEIEKYVLKGP 283 (401)
T ss_pred CCeEEEEeccccCCCCCcccccCCC--ceEccCCCCCcHhhhhcHhcCcHHHHH-HHHHHhCcCChHHHHHHHHHhhcCC
Confidence 3445555565543 222 223333 699999999999999999999999999 9997651 1111 11111111
Q ss_pred cchhHHHHHhh------hcC--ChHhHHHHHHHHhcC---CCChHHHHH-----HHHHHHHHHhHHHHHHHHHHhH
Q 027582 145 EVDIPVKYLSF------FLE--DDAELEHIKKEYGAG---GMLTGEVKQ-----RLAKVLTELVERHQVARAAVTD 204 (221)
Q Consensus 145 ~v~~~~~~l~~------~~~--~~~~~eel~~~y~~g---~~~~~~lK~-----~lae~l~~~l~pire~~~~~~~ 204 (221)
+...+-.++.. +.. ..+..++.+..|.+| .+++.++|. .++..+...|.|.|........
T Consensus 284 ~~r~~k~~LA~e~~~~~hG~~~a~~a~~~~~~~F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr~i~ 359 (401)
T COG0162 284 EPREAKKLLAKEVTKLVHGEEAAEAAEEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARRLIQ 359 (401)
T ss_pred ChHHHHHHHHHHhhHhhcCHHHHHHHHHHHHHHHhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHhhcc
Confidence 11111111111 111 135688899999988 899999999 8888888889999988776443
No 33
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=95.52 E-value=0.037 Score=52.50 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=53.0
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC------CHHHHHHHHhh
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 124 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D------~p~~I~~KI~k 124 (221)
++|..|.||..|.-.-..+.+.+|.+.|...|.+++.+++| +||||.++ .+.+.+ .|+.+..-+.+
T Consensus 209 thvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g--~klSKR~g--~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 209 THVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDG--KKLSKRHG--ATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred CEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccCcCC--ccCHHHHHHCCCCHHHHHHHHHH
Confidence 57889999999999999999999998898888888888888 69999976 444432 46666655544
No 34
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=94.90 E-value=0.02 Score=51.00 Aligned_cols=54 Identities=20% Similarity=0.079 Sum_probs=35.8
Q ss_pred cccCCCCch-HHHHHHHHHHHHhCCC-Cc-cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582 56 LIPCAIDQD-PYFRMTRDVAPRIGYH-KP-ALIESSFFPALQGETGKMSASDPNSAIYVT 112 (221)
Q Consensus 56 ~vpvG~DQ~-~h~~laR~ia~~~n~~-~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~ 112 (221)
+..+|.||. +|++...-.+..++.. .| .++.+.++-.-.| +|||||.+| .|.+.
T Consensus 229 i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~KmSKS~gn-~v~~~ 285 (312)
T cd00668 229 WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGG--QKMSKSKGN-VIDPS 285 (312)
T ss_pred EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCC--ccccccCCC-cCCHH
Confidence 568999999 8877666666656543 23 3334566653333 699999986 77664
No 35
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=94.87 E-value=0.27 Score=46.65 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=53.5
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC------CHHHHHHHHhh
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 124 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D------~p~~I~~KI~k 124 (221)
++|..|.||..|...-..+.+.+|.+.|...|.+++.+++| +||||..+ .+.|.+ .|+.+..-+..
T Consensus 199 thvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g--~kLSKR~g--~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 199 THVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG--KKLSKRDG--ATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred CEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC--ccccccCC--CccHHHHHHCCCCHHHHHHHHHH
Confidence 57889999999999999999999998898888888888888 69999976 444432 46666666655
No 36
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=94.82 E-value=0.021 Score=54.51 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=42.5
Q ss_pred cccCCCCchHHHHHHHHHHHHhCCCCcc---ccc--cCcccCCCCCCCCcCCCCCCCceecCCCHHH
Q 027582 56 LIPCAIDQDPYFRMTRDVAPRIGYHKPA---LIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKA 117 (221)
Q Consensus 56 ~vpvG~DQ~~h~~laR~ia~~~n~~~p~---~l~--~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~ 117 (221)
+-.+|.||..|+.-...+++.+|...+. ++| ..++-+=+| +|||||.+| .|.+.|=-++
T Consensus 276 i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g--~KMSkR~Gn-~i~l~dll~~ 339 (507)
T PRK01611 276 IYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEG--VKMSTRAGN-VVTLDDLLDE 339 (507)
T ss_pred EEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCC--CcccCCCCc-eeEHHHHHHH
Confidence 4489999999999999999999986442 233 234434344 699999986 8877654444
No 37
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=94.54 E-value=0.027 Score=57.44 Aligned_cols=56 Identities=25% Similarity=0.109 Sum_probs=39.4
Q ss_pred ccCCCCcccccCCCCch---HHHHHHHHHHHHhCCCCcc-ccccCcccCCCCCCCCcCCCCCCCcee
Q 027582 48 SGKDHLRCLIPCAIDQD---PYFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIY 110 (221)
Q Consensus 48 ~~~ad~~~~vpvG~DQ~---~h~~laR~ia~~~n~~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~ 110 (221)
.+.+| +...|.||. .|-.+-..++- +|.+.+. ++.+.++...+| +|||||.+| .|.
T Consensus 543 ~~P~D---l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G--~KMSKSlGN-vId 602 (912)
T PRK05743 543 GYPAD---LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKG--RKMSKSLGN-VID 602 (912)
T ss_pred CCCce---EEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCC--CCCCCCCCC-cCC
Confidence 35565 578999997 55666666665 6654453 445788888787 799999987 554
No 38
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=94.28 E-value=0.097 Score=50.14 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=81.0
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCcee-c---CCCHHHHHHHHhhccccCC
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-V---TDSAKAIKNKINKYAFSGG 130 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L---~D~p~~I~~KI~k~A~td~ 130 (221)
++|..|.||..|.-.-..+.+.+|...|...|.++|.+++| +||||..+...|. + -=.|+.|..-+.....+.+
T Consensus 198 thVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g--~KLSKR~g~~~i~~~r~~G~~Peai~n~la~LG~s~~ 275 (513)
T PRK14895 198 THIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG--AKLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWSHG 275 (513)
T ss_pred CEEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCC--CccccccCchhHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 57889999999999999999999999999999999999988 7999998743332 1 1237777777664222211
Q ss_pred cchhhhhhhcCCCccchhHHHHHhhhc----------CChHhHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 027582 131 QESVELHRKLGANLEVDIPVKYLSFFL----------EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 190 (221)
Q Consensus 131 ~~~~~~~~~~~~~p~v~~~~~~l~~~~----------~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~ 190 (221)
+.++..+-.++..|. .+.+.+..+...|-. .+...++...+...+.+
T Consensus 276 ------------~~e~~~~~el~~~F~~~~v~~s~~~FD~~KL~wlN~~yi~-~l~~~el~~~~~~~l~~ 332 (513)
T PRK14895 276 ------------DDEIISMTQAIDWFNLDSLGKSPSKLDFAKMNSLNAHYLR-MLDNDSLTSKTVEILEQ 332 (513)
T ss_pred ------------CcCCCCHHHHHhhCCHHhCcCCcCcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 111212222233221 045678888888864 47788877766665543
No 39
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=94.09 E-value=0.036 Score=50.96 Aligned_cols=55 Identities=20% Similarity=0.104 Sum_probs=33.4
Q ss_pred cccCCCCchHHHHHH-HHHHHHhCCCCc--cccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 56 LIPCAIDQDPYFRMT-RDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 56 ~vpvG~DQ~~h~~la-R~ia~~~n~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
+...|.||...+-.. --.+..+....| .++.+.++.+++| +|||||.+| .|.+.|
T Consensus 299 ~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g--~KMSKS~Gn-~v~~~d 356 (382)
T cd00817 299 LLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDG--RKMSKSLGN-VIDPLD 356 (382)
T ss_pred eeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCC--CCccccCCC-CCCHHH
Confidence 468899997543322 222222222234 4455778877777 799999986 776643
No 40
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=93.79 E-value=0.047 Score=49.42 Aligned_cols=53 Identities=26% Similarity=0.158 Sum_probs=34.0
Q ss_pred cccCCCCch---HHHHHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582 56 LIPCAIDQD---PYFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 112 (221)
Q Consensus 56 ~vpvG~DQ~---~h~~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~ 112 (221)
+...|.||. -|..+..-++ -.+...| .++.+.++...+| +|||||.+| .|.+.
T Consensus 255 ~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g--~KmSKS~gn-~i~~~ 311 (338)
T cd00818 255 FILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDG--RKMSKSLGN-YVDPQ 311 (338)
T ss_pred EEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCC--CCCCCCCCC-cCCHH
Confidence 467899997 4545544444 3343332 3445677766677 699999987 77764
No 41
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=93.50 E-value=0.078 Score=44.69 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=35.2
Q ss_pred cCCCCchHHHHHHHHHHHHhCCC-Cccc--cccCcccCCCCCCCCcCCCC
Q 027582 58 PCAIDQDPYFRMTRDVAPRIGYH-KPAL--IESSFFPALQGETGKMSASD 104 (221)
Q Consensus 58 pvG~DQ~~h~~laR~ia~~~n~~-~p~~--l~~~~lp~L~g~~~KMSkS~ 104 (221)
.+|.||..|+.-.+.+++.+|.+ .|.. +..++|..-+| +||||..
T Consensus 164 v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~--~kmS~R~ 211 (212)
T cd00671 164 VVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKE--GKMSTRA 211 (212)
T ss_pred EECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCC--CCCCCCC
Confidence 89999999999999999999975 3333 33467765445 6999975
No 42
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=93.41 E-value=0.042 Score=49.13 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=33.0
Q ss_pred cccCCCCchHHH----HHHHHHHHHhCC---CCcc-ccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 56 LIPCAIDQDPYF----RMTRDVAPRIGY---HKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 56 ~vpvG~DQ~~h~----~laR~ia~~~n~---~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
+-.+|.||.+++ ..-..++...++ +.|. ++.+.+|- ++| +|||||.+| .|.+.|
T Consensus 227 i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g--~KmSkS~Gn-~v~~~d 288 (314)
T cd00812 227 IYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEG--EKMSKSKGN-VVTPDE 288 (314)
T ss_pred eeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCc--cccCCcCCC-CCCHHH
Confidence 457899997644 344444444553 3343 33345554 566 799999986 777653
No 43
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=92.97 E-value=0.08 Score=51.21 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=46.6
Q ss_pred cccCCCCchHHHHHHHHHHHHhCCCCcc-cccc--CcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582 56 LIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 124 (221)
Q Consensus 56 ~vpvG~DQ~~h~~laR~ia~~~n~~~p~-~l~~--~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k 124 (221)
+-.+|.||..|+.-...++..+|++.|. +.++ -++. + .|||||.+| .|.+.|=.++..++...
T Consensus 331 I~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~---~--~kmSkr~Gn-~V~~~dll~~~~~ra~~ 396 (566)
T TIGR00456 331 IYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVP---L--GSMKTRRGN-VISLDNLLDEASKRAGN 396 (566)
T ss_pred EEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEE---C--CCCCccCCc-eeeHHHHHHHHHHHHHH
Confidence 4579999999999999999999987664 3333 2332 2 499999975 99998766665554444
No 44
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=92.59 E-value=0.083 Score=53.54 Aligned_cols=53 Identities=26% Similarity=0.206 Sum_probs=33.6
Q ss_pred cccCCCCchH---HHHHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582 56 LIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 112 (221)
Q Consensus 56 ~vpvG~DQ~~---h~~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~ 112 (221)
+...|.||.. |..+-.-++- ++.+.| .++.+.++...+| +|||||.+| .|...
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~-~~~~P~k~v~~hG~vl~~~G--~KMSKSkGN-vI~p~ 623 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTAL-FGQAPYKNVITHGFTLDEKG--RKMSKSLGN-VVDPL 623 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHH-cCCCChHhhEecceEECCCC--CCcCCCCCC-CCCHH
Confidence 5789999975 4344433332 454443 3344677776666 799999986 66553
No 45
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=92.58 E-value=0.087 Score=54.62 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=44.0
Q ss_pred cccCCCCchHHHHHHHHHHHHhCC--CCc--cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582 56 LIPCAIDQDPYFRMTRDVAPRIGY--HKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 124 (221)
Q Consensus 56 ~vpvG~DQ~~h~~laR~ia~~~n~--~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k 124 (221)
+...|.||. ++=++|-++..+.+ ..| .++.+.+|..-+| +|||||.+| .|+..| .+|.++--+..
T Consensus 494 ~~~~G~Dii-~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G--~KMSKSkGN-vIdP~dvIe~yGaDalR~~L~~ 567 (1052)
T PRK14900 494 VMETGHDII-FFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKG--QKMSKTKGN-VIDPLVITEQYGADALRFTLAA 567 (1052)
T ss_pred hhcccccHH-hHHHHHHHHHHHHhcCCCccceeEecccEECCCC--CCccCCCCC-CCCHHHHHHHhCcHHHHHHHHh
Confidence 457899998 45777888765532 345 4556788877777 799999986 776654 35555554444
No 46
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=92.43 E-value=0.09 Score=50.93 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=54.0
Q ss_pred ccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCC
Q 027582 27 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 105 (221)
Q Consensus 27 ~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~ 105 (221)
-..||.++=|.++- |. +.+. |+|..|.|...+-..=.-+.+.||.+.|...|.++|. ++| .|||||..
T Consensus 277 ~~i~PtY~fA~~VD----D~-l~GI---THViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~-~~g--~kLSKR~~ 344 (567)
T PRK04156 277 YRVWPTYNFAVAVD----DH-LLGV---THVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLK-IEG--FVLSTSKI 344 (567)
T ss_pred eEEEEEeccCceee----ec-CCCC---CeEEcccccccChHHHHHHHHHcCCCCceEEEcceec-CCC--ceeecccc
Confidence 34588888775552 43 3444 7899999999998888899999999999999999886 566 69999973
No 47
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=92.27 E-value=0.09 Score=54.01 Aligned_cols=57 Identities=21% Similarity=0.113 Sum_probs=35.3
Q ss_pred ccCCCCcccccCCCCchH---HHHHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceec
Q 027582 48 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 48 ~~~ad~~~~vpvG~DQ~~---h~~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
.+.+| +...|.||.. |-.+..-++ -.|.+.+ .++.|.++...+| +|||||.+| .|..
T Consensus 581 ~~PaD---~~~eG~Di~rgWF~s~ll~s~~-~~~~~P~k~V~~HG~vld~~G--~KMSKSlGN-vIdP 641 (961)
T PRK13804 581 KWPAD---LYLEGSDQHRGWFNSSLLESCG-TRGRAPYKAVLTHGFTLDEKG--EKMSKSLGN-TVSP 641 (961)
T ss_pred CCCce---EEEEEcccccHHHHHHHHHHHH-hcCCCChhhEEEeccEECCCC--CCccCCCCC-cCCH
Confidence 45665 5689999974 333322222 1122222 5556788888788 799999987 6654
No 48
>PLN02286 arginine-tRNA ligase
Probab=92.17 E-value=0.42 Score=46.50 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=49.2
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCc------cccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKP------ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 124 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p------~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k 124 (221)
.+-.+|.||..|+.-...+++.+|+..+ .++...+|-+++| +||||-.++ .|.|.|=-++..++.+.
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g--~kmStR~G~-~v~L~dlldea~~~a~~ 402 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG--KRFRTRSGE-VVRLVDLLDEAKSRSKA 402 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC--CcccCCCCC-eeEHHHHHHHHHHHHHH
Confidence 3557899999999999999999997522 2344567866776 699988775 89887766655444444
No 49
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=92.15 E-value=0.075 Score=50.98 Aligned_cols=55 Identities=25% Similarity=0.396 Sum_probs=33.4
Q ss_pred ccccCCCCchHHH---HHHHHHHH-HhCCCCccccccCcccCCCCCCCCcCCCCCCCceec
Q 027582 55 CLIPCAIDQDPYF---RMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 55 ~~vpvG~DQ~~h~---~laR~ia~-~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
++-|.|.|+...- ....++|+ -||...|..+..-++ .|+|.++|||||.+| .|.+
T Consensus 227 ~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v-~L~~~g~KMSKS~Gn-~itl 285 (515)
T TIGR00467 227 TFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWI-SLKGKGGKMSSSKGD-VISV 285 (515)
T ss_pred ccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEE-EEcCCCccccCCCCC-CccH
Confidence 3579999975422 44566665 676656654332222 155555799999886 5554
No 50
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=91.99 E-value=0.1 Score=53.07 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=37.7
Q ss_pred cccCCCCchHHHHHHHHHHHHhCC--CCc--cccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 56 LIPCAIDQDPYFRMTRDVAPRIGY--HKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 56 ~vpvG~DQ~~h~~laR~ia~~~n~--~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
+...|.||..+ =++|-++..... ..| .++.+.++-..+| +|||||.+| .|...|
T Consensus 476 ~~~~G~Dii~~-W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKSlGN-vIdP~d 533 (874)
T PRK05729 476 VLVTGFDIIFF-WVARMIMMGLHFTGQVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDPLD 533 (874)
T ss_pred cccccccccch-HHHHHHHHHHHhcCCCchhheEEeeeEECCCC--CCcccCCCC-CCCHHH
Confidence 46889999874 566666655432 345 4556788888888 799999986 676543
No 51
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=91.85 E-value=0.073 Score=50.35 Aligned_cols=63 Identities=24% Similarity=0.224 Sum_probs=38.5
Q ss_pred cccCCCCchHHH---HHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582 56 LIPCAIDQDPYF---RMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 124 (221)
Q Consensus 56 ~vpvG~DQ~~h~---~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k 124 (221)
+...|.||..++ ..+.-.| .+.+.| .++.+.++- ++| +|||||.+| .|.+.| +++.++=-+.+
T Consensus 257 ~~~~G~D~~~~h~~~~~a~~~a--~~~~~p~~~~~~g~v~-~~G--~KMSKS~GN-~i~~~dll~~~g~DalR~~ll~ 328 (511)
T PRK11893 257 VHLIGKDILRFHAVYWPAFLMA--AGLPLPKRVFAHGFLT-LDG--EKMSKSLGN-VIDPFDLVDEYGVDAVRYFLLR 328 (511)
T ss_pred ceEecccccccchhHHHHHHHh--CCCCCCCEEEeeccEE-ECC--eeecccCCc-EEcHHHHHHHcCcHHHHHHHHh
Confidence 367899998852 2233333 255556 344566665 566 799999986 887744 34555444433
No 52
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=91.55 E-value=0.13 Score=52.95 Aligned_cols=55 Identities=25% Similarity=0.210 Sum_probs=38.8
Q ss_pred cCCCCcccccCCCCchHHHHHHHHHHHHhCC--CCc--cccccCcccCCCCCCCCcCCCCCCCcee
Q 027582 49 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--HKP--ALIESSFFPALQGETGKMSASDPNSAIY 110 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~ 110 (221)
|.+| +...|.||.. +=++|-++....+ ..| .++.|.++-+-+| +|||||.+| .|.
T Consensus 537 ~P~d---~~~~G~Dii~-~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G--~KMSKSlGN-vId 595 (995)
T PTZ00419 537 FPTS---LLETGSDILF-FWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQG--EKMSKSKGN-VID 595 (995)
T ss_pred CCCc---EEEechhHHh-HHHHHHHHHHHHhcCCCChHHHhccceEECCCC--CCcccCCCC-cCC
Confidence 4564 5688999876 5666666665533 456 4566888888787 799999987 553
No 53
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=91.52 E-value=0.13 Score=51.73 Aligned_cols=52 Identities=23% Similarity=0.194 Sum_probs=32.2
Q ss_pred cccCCCCchHHHHHHHHHHHH---hCCCCc--cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582 56 LIPCAIDQDPYFRMTRDVAPR---IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 112 (221)
Q Consensus 56 ~vpvG~DQ~~h~~laR~ia~~---~n~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~ 112 (221)
+...|.||... -+.+-++.. ++. .| .++.+.++...+| +|||||.+| .|...
T Consensus 489 ~~~~G~Di~~~-w~~~~l~~~~~~~~~-~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~ 545 (800)
T PRK13208 489 LRPQGHDIIRT-WLFYTILRAYLLTGK-LPWKNIMISGMVLDPDG--KKMSKSKGN-VVTPE 545 (800)
T ss_pred EEEeecchhhh-HHHHHHHHHHHhcCC-CCcceEEEeeEEECCCC--CCCCCCCCC-CCCHH
Confidence 45789999862 223333222 232 34 3445777777777 799999986 66653
No 54
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=91.43 E-value=0.095 Score=49.50 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=31.0
Q ss_pred cccCCCCch-HHHHHHHHHHH---HhCCCCccc-cccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 56 LIPCAIDQD-PYFRMTRDVAP---RIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 56 ~vpvG~DQ~-~h~~laR~ia~---~~n~~~p~~-l~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
+-++|.|.. +|+ .++||. -+|.|-+.+ +|+.+| .++| +|||||.+| .|.+.|
T Consensus 223 ih~gG~DlifpHh--~neiaqs~a~~g~p~~~~w~H~g~v-~~~G--~KMSKS~GN-~i~~~d 279 (463)
T PRK00260 223 IHGGGADLIFPHH--ENEIAQSEAATGKPFANYWMHNGFV-TVNG--EKMSKSLGN-FFTIRD 279 (463)
T ss_pred eecCccccCCCch--HhHHHHHHHhcCCCcceEEEEccEE-ccCC--CcccCcCCC-CCCHHH
Confidence 458999953 454 455665 245222223 344444 4777 699999986 666543
No 55
>PLN02381 valyl-tRNA synthetase
Probab=91.37 E-value=0.12 Score=53.76 Aligned_cols=55 Identities=22% Similarity=0.205 Sum_probs=39.6
Q ss_pred cCCCCcccccCCCCchHHHHHHHHHHHHhCC--CCc--cccccCcccCCCCCCCCcCCCCCCCcee
Q 027582 49 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--HKP--ALIESSFFPALQGETGKMSASDPNSAIY 110 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~ 110 (221)
|.+| +..-|.||. ++=++|-+...+.. ..| .++.+.+|-+-+| +|||||.+| .|.
T Consensus 607 ~P~d---~~~~G~Dii-~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G--~KMSKS~GN-vId 665 (1066)
T PLN02381 607 YPTS---VLETGHDIL-FFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG--RKMSKSLGN-VID 665 (1066)
T ss_pred CCCe---eeeecchhh-hhHHHHHHHHHHHhCCCCchHHheecceEECCCC--CCCCCCCCC-CCC
Confidence 5565 467899998 56677777665433 455 4566888888888 799999987 554
No 56
>PLN02843 isoleucyl-tRNA synthetase
Probab=91.34 E-value=0.14 Score=52.73 Aligned_cols=56 Identities=25% Similarity=0.135 Sum_probs=35.5
Q ss_pred ccCCCCcccccCCCCchH---HHHHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCcee
Q 027582 48 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIY 110 (221)
Q Consensus 48 ~~~ad~~~~vpvG~DQ~~---h~~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~ 110 (221)
.+.+| +...|.||.. |-++..-++ -.|.+.+ .++.|.++..-+| +|||||.+| .|.
T Consensus 562 ~~PaD---l~~eG~Di~rgWf~s~l~~~~~-~~g~~Pfk~v~~HG~vld~~G--~KMSKSlGN-vI~ 621 (974)
T PLN02843 562 SYPAD---LYLEGSDQHRGWFQSSLLTSVA-TKGKAPYKSVLTHGFVLDEKG--FKMSKSLGN-VVD 621 (974)
T ss_pred CCCce---eeeeeccccchHHHHHHHHHHH-hcCCCccceEEEeccEECCCC--CCcCCCCCC-cCC
Confidence 45565 5689999987 334443332 2444222 4455777777777 799999986 554
No 57
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=91.28 E-value=0.086 Score=51.34 Aligned_cols=57 Identities=25% Similarity=0.122 Sum_probs=32.1
Q ss_pred cCCCCcccccCCCCchHH-HHHHHHHHHHhCCCCc--cccccCcccCCCCCCCCcCCCCCCCceec
Q 027582 49 GKDHLRCLIPCAIDQDPY-FRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~h-~~laR~ia~~~n~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
|.+| +...|.||... +....-+...+.-..| .++.+.++...+| +|||||.+| .|..
T Consensus 513 ~P~D---~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p 572 (601)
T PF00133_consen 513 YPVD---LYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDG--RKMSKSKGN-VIDP 572 (601)
T ss_dssp SSBS---EEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTS--SB-BTTTTB---BH
T ss_pred CCcc---cccCCccchhhHHHHhHhhccccccCCchheeeecccccccce--eecccCCCc-ccCH
Confidence 4554 56789999753 3333333333333333 5566788888888 799999987 6643
No 58
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=90.88 E-value=1.2 Score=44.15 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=33.8
Q ss_pred cccCCCCchHHHHH---HHHHHHHhCCCCcccc-ccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 56 LIPCAIDQDPYFRM---TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 56 ~vpvG~DQ~~h~~l---aR~ia~~~n~~~p~~l-~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
+..+|.|-..++.+ |.-+| .|++.|..+ .+.++.. +| +|||||.+| .|+..|
T Consensus 287 v~~iGkDi~~fH~i~wpa~l~a--~g~~lP~~v~~hg~v~~-~G--~KMSKS~GN-vV~p~d 342 (673)
T PRK00133 287 YHFIGKDIIYFHTLFWPAMLEG--AGYRLPTNVFAHGFLTV-EG--AKMSKSRGT-FIWART 342 (673)
T ss_pred EEEEeecchhHHHHHHHHHHHh--CCCCCCCEEeeeccEEe-cC--CcccccCCc-ccCHHH
Confidence 45689999886533 44444 466666443 3566655 66 799999986 676543
No 59
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=90.71 E-value=0.13 Score=48.69 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=36.5
Q ss_pred cccccCCCCcccccCCCCc-hHHHHHHHHHHHH-hCCCCccc-cccCcccCCCCCCCCcCCCCCCCceecC
Q 027582 45 HLFSGKDHLRCLIPCAIDQ-DPYFRMTRDVAPR-IGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVT 112 (221)
Q Consensus 45 Dil~~~ad~~~~vpvG~DQ-~~h~~laR~ia~~-~n~~~p~~-l~~~~lp~L~g~~~KMSkS~~~s~I~L~ 112 (221)
.+|...-| +-.+|.|. -+|++--+-.+.- +|.+-+.. +++.+| .++| +|||||.+| .|.+.
T Consensus 214 ~~lg~~~D---ih~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v-~~~g--~KMSKS~GN-~i~~~ 277 (465)
T TIGR00435 214 KYLGDQID---IHGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFL-MIDN--EKMSKSLGN-FFTVR 277 (465)
T ss_pred HhcCCCce---eeccccccccchHHHHHHHHHHhcCCCCCcEEEEeeEE-EecC--ccccccCCC-cCCHH
Confidence 45544444 45899998 4676655555443 45333333 344443 4777 699999986 66553
No 60
>PLN02943 aminoacyl-tRNA ligase
Probab=90.48 E-value=0.16 Score=52.25 Aligned_cols=69 Identities=22% Similarity=0.226 Sum_probs=44.8
Q ss_pred cCCCCcccccCCCCchHHHHHHHHHHHHhCC--CCc--cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHH
Q 027582 49 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--HKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK 119 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~ 119 (221)
|.+| +...|.||. .+=++|-++..... ..| .++.|.++...+| +|||||.+| .|...| .++.++
T Consensus 535 yP~d---l~~~G~Dii-~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~~i~~ygaDalR 607 (958)
T PLN02943 535 YPTT---VLETGHDIL-FFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQG--RKMSKTLGN-VIDPLDTIKEFGTDALR 607 (958)
T ss_pred CCCe---EEEEeehHH-HHHHHHHHHhhhhhcCCCChheEEEeccEECCCC--CcccCcCCC-CCCHHHHHHhcCChHHH
Confidence 4454 457799998 46777766643332 335 3455778877888 799999986 776543 355565
Q ss_pred HHHhh
Q 027582 120 NKINK 124 (221)
Q Consensus 120 ~KI~k 124 (221)
--+..
T Consensus 608 ~~l~~ 612 (958)
T PLN02943 608 FTLAL 612 (958)
T ss_pred HHHHh
Confidence 54444
No 61
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=90.20 E-value=0.44 Score=42.11 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=52.5
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 124 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k 124 (221)
|+|.-|.|....--.=.-|.+.||.+.|...|.|+|.+.+| +|+||++....|.=.+.++.+..-+..
T Consensus 187 ThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKR~~~~~i~~~~~~~~~~~~l~~ 254 (272)
T TIGR03838 187 THVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADG--EKLSKQNGAPALDLSHPLPALLAALRF 254 (272)
T ss_pred CEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhCCCC--CeeeccCCccchhcCCcHHHHHHHHHH
Confidence 68999999988877778888999999999999999999998 699999865444333444444444443
No 62
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=90.08 E-value=0.18 Score=51.41 Aligned_cols=53 Identities=21% Similarity=0.145 Sum_probs=31.5
Q ss_pred cccCCCCchH-HHHHHHHHHHH-hCC-CCc-cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582 56 LIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 112 (221)
Q Consensus 56 ~vpvG~DQ~~-h~~laR~ia~~-~n~-~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~ 112 (221)
+...|.||.. |+-...-...- |+. +-| .++.+.++.. +| +|||||.+| .|...
T Consensus 533 ~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G--~KMSKS~GN-vVdp~ 589 (897)
T PRK12300 533 WRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EG--KKMSKSKGN-VIPLR 589 (897)
T ss_pred EEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CC--ccccCcCCC-CCCHH
Confidence 4688999966 54444322211 221 334 4445666665 66 799999987 66543
No 63
>PLN02959 aminoacyl-tRNA ligase
Probab=90.02 E-value=0.24 Score=51.53 Aligned_cols=57 Identities=19% Similarity=0.070 Sum_probs=32.9
Q ss_pred cCCCCcccccCCCCchHHHHHHHHHHHH---hCC-CCcc-ccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 49 GKDHLRCLIPCAIDQDPYFRMTRDVAPR---IGY-HKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~---~n~-~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
|.+| +...|.||.... ++.-+... ++. |-|. ++.+.+|. ++| +|||||.+| .|.+.|
T Consensus 670 yP~D---l~~sG~Dii~~w-l~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G--~KMSKSkGN-vI~p~d 731 (1084)
T PLN02959 670 YPFD---LRVSGKDLIQNH-LTFAIYNHTAIWAEEHWPRGFRCNGHLM-LNS--EKMSKSTGN-FLTLRQ 731 (1084)
T ss_pred CCCe---EEEecccHHHHH-HHHHHHHHHHhcCCCCCCceEEEccEEe-cCC--cCccccCCC-cCCHHH
Confidence 4554 457899996653 23333332 221 2222 33455555 666 799999986 666543
No 64
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=89.89 E-value=0.21 Score=50.75 Aligned_cols=69 Identities=22% Similarity=0.182 Sum_probs=42.8
Q ss_pred cCCCCcccccCCCCchHHHHHHHHHHHHhC--CCCc--cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHH
Q 027582 49 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK 119 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n--~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~ 119 (221)
+.+| +...|.||... -++|-++-... -..| .++.+.++...+| +|||||.+| .|.+.| ..+.++
T Consensus 477 ~P~d---~~~~G~Dii~f-w~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKS~GN-~i~p~~~i~~ygaDalR 549 (861)
T TIGR00422 477 YPTD---LLVTGYDIIFF-WVARMIFRSLALTGQVPFKEVYIHGLVRDEQG--RKMSKSLGN-VIDPLDVIEKYGADALR 549 (861)
T ss_pred CCcc---eeecchhhhhH-HHHHHHHHHHHhcCCCchheEEEeeEEECCCC--CCCCcCCCC-CCCHHHHHHHhChHHHH
Confidence 4454 56899999765 34455554322 1345 4556788888787 799999986 676543 244444
Q ss_pred HHHhh
Q 027582 120 NKINK 124 (221)
Q Consensus 120 ~KI~k 124 (221)
--+..
T Consensus 550 ~~l~~ 554 (861)
T TIGR00422 550 FTLAS 554 (861)
T ss_pred HHHHh
Confidence 44443
No 65
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=89.79 E-value=0.29 Score=43.86 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=44.5
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCC
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 106 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~ 106 (221)
|+|.=|.|....-..=.-+.+.||.+.|...|.|+|.+.+| +|+||++..
T Consensus 194 ThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKr~~~ 243 (299)
T PRK05710 194 THVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNADG--QKLSKQNGA 243 (299)
T ss_pred CEEEeChhhhhcCHHHHHHHHHcCCCCCeEEEeecccCCCC--CcccccCCc
Confidence 68999999988877778899999999999999999999998 699999753
No 66
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=89.78 E-value=0.22 Score=51.28 Aligned_cols=56 Identities=20% Similarity=0.004 Sum_probs=33.4
Q ss_pred cCCCCcccccCCCCchHHHHHHHHHHH---HhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceec
Q 027582 49 GKDHLRCLIPCAIDQDPYFRMTRDVAP---RIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~---~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
+.+| +...|.||... =+.+-++. -+|.+.+ .++.+.++...+| +|||||.+| .|..
T Consensus 544 ~Pad---~~~~G~Di~r~-Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G--~KMSKSlGN-vIdP 603 (975)
T PRK06039 544 FPAD---FIVEGIDQTRG-WFYTLLALSTALFDRPPYKNVLVHGHVLDEDG--QKMSKSLGN-YVDP 603 (975)
T ss_pred CCce---EEEechhhHhh-HHHHHHHHHHHhcCCCcccEEEEeeeEECCCC--CCcCCCCCC-cCCH
Confidence 4454 56789999753 12222222 2343222 3445677776677 799999986 6654
No 67
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=89.72 E-value=0.26 Score=45.62 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=35.2
Q ss_pred cccccCCCCcccccCCCCch-HHHHHHHHHHHH-hCC-CCccccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582 45 HLFSGKDHLRCLIPCAIDQD-PYFRMTRDVAPR-IGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVT 112 (221)
Q Consensus 45 Dil~~~ad~~~~vpvG~DQ~-~h~~laR~ia~~-~n~-~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~ 112 (221)
.+|.-.-|| --+|.|-. +|+|--+-.... +|. +-+.+..+.-+...+| +|||||.+| .|.+.
T Consensus 209 ~~lg~~~DI---H~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G--~KMSKSlGN-~i~~~ 273 (384)
T PRK12418 209 NRLGSGFDI---QGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDG--EKMSKSRGN-LVFVS 273 (384)
T ss_pred HHcCCCccc---ccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCC--CcccCcCCC-cCCHH
Confidence 454443443 35777754 566554444433 343 2233444444556677 799999986 77664
No 68
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=89.71 E-value=0.19 Score=51.54 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=37.3
Q ss_pred cccCCCCchH-HHHHHHHHHHHhCCC---Cc-cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582 56 LIPCAIDQDP-YFRMTRDVAPRIGYH---KP-ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 124 (221)
Q Consensus 56 ~vpvG~DQ~~-h~~laR~ia~~~n~~---~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k 124 (221)
+...|.||.+ |+....-.. ...++ -| .++++.++.. +| +|||||.+| .|.+.| +++.++=-+..
T Consensus 576 ~~~~GkDii~~H~~~~i~~~-~a~~~~~~~Pk~i~~~G~vl~-~G--~KMSKSlGN-vI~p~d~i~~yGaDalRl~Ll~ 649 (938)
T TIGR00395 576 WRISGKDLIPNHLTFYIFHH-VAIFPEKFWPRGIVVNGYVML-EG--KKMSKSKGN-VLTLEQAVEKFGADVARLYIAD 649 (938)
T ss_pred EEEEeeccccchHHHHHHHH-HHcCCccccCcEEEEeceEEe-CC--ccccCcCCC-CCCHHHHHHHcChHHHHHHHHh
Confidence 4688999976 555442221 12222 23 4445666654 66 799999986 776543 35555555554
No 69
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=89.71 E-value=1.3 Score=43.46 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=36.4
Q ss_pred cccCCCCchHHHH-H--HHHHHHHhCCCCccccc-cCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582 56 LIPCAIDQDPYFR-M--TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 124 (221)
Q Consensus 56 ~vpvG~DQ~~h~~-l--aR~ia~~~n~~~p~~l~-~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k 124 (221)
+...|.||..++- + +.-+ -.|++.|..+. +.++. +.| +|||||.+| .|+..| +++.++=-+.+
T Consensus 257 ~~~~GkDii~fH~i~wpa~l~--~~~~~~p~~v~~hg~l~-~eg--~KMSKS~GN-~i~p~d~l~~ygaD~lR~~L~~ 328 (648)
T PRK12267 257 VHLVGKDILRFHAIYWPIMLM--ALGLPLPKKVFAHGWWL-MKD--GKMSKSKGN-VVDPEELVDRYGLDALRYYLLR 328 (648)
T ss_pred eEEEeeeecchhHHHHHHHHH--hCCCCCCcEEEecceEE-ECC--ceecccCCc-ccCHHHHHHHcCCcHHHHHHHh
Confidence 4578999987433 2 2222 24566665443 44443 345 799999986 776644 34555544443
No 70
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=88.98 E-value=0.2 Score=44.79 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=31.6
Q ss_pred cccCCCCchHHHHHHH-HHHHHhCCCCccccc-cCcccCCCCCCCCcCCCCCCCceecC
Q 027582 56 LIPCAIDQDPYFRMTR-DVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVT 112 (221)
Q Consensus 56 ~vpvG~DQ~~h~~laR-~ia~~~n~~~p~~l~-~~~lp~L~g~~~KMSkS~~~s~I~L~ 112 (221)
+..+|.|+..++.+.- -+..-.+.+.|..+. +.++ .++| +|||||.+| .|.+.
T Consensus 238 v~~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~-~~~g--~kmSkS~gn-~i~~~ 292 (319)
T cd00814 238 VHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYL-TVEG--KKMSKSRGN-VVDPD 292 (319)
T ss_pred EEEEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeE-EECC--eeecccCCc-ccCHH
Confidence 5689999988642211 122234555454443 4443 4456 699999986 77764
No 71
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=88.80 E-value=0.22 Score=42.31 Aligned_cols=63 Identities=19% Similarity=0.072 Sum_probs=36.9
Q ss_pred cccccCCCCcccccCCCCch-HHHHHHHHHHHH-hCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 45 HLFSGKDHLRCLIPCAIDQD-PYFRMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 45 Dil~~~ad~~~~vpvG~DQ~-~h~~laR~ia~~-~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
..|...-| +--+|.|.. +|++--.-.... +|.+.+....+.-+-.++| +|||||.+| .|.+.|
T Consensus 123 ~~lg~~~d---ih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g--~KMSKs~Gn-~v~~~d 187 (213)
T cd00672 123 KYLGETFD---IHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDG--EKMSKSLGN-FITVRD 187 (213)
T ss_pred HHcCCCcc---EEeecCCCCcChHHHHHHHHHHHhCCCCCcEEEEEEEEeccC--cchhhcCCC-ccCHHH
Confidence 44443344 346788865 566655544443 4543343444434456777 699999986 676654
No 72
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=88.52 E-value=0.23 Score=50.34 Aligned_cols=60 Identities=22% Similarity=0.135 Sum_probs=36.9
Q ss_pred cCCCCcccccCCCCc-hHHHHHHHHHHHHh---C---CCCc--cccccCcccC----CCCC-----------------C-
Q 027582 49 GKDHLRCLIPCAIDQ-DPYFRMTRDVAPRI---G---YHKP--ALIESSFFPA----LQGE-----------------T- 97 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ-~~h~~laR~ia~~~---n---~~~p--~~l~~~~lp~----L~g~-----------------~- 97 (221)
+.+| +...|.|| .-|+-.+|-....+ + ..+| .++.+.++-+ -+|. +
T Consensus 519 ~PvD---~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 595 (842)
T TIGR00396 519 LPVD---LYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGG 595 (842)
T ss_pred CCCc---EeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCC
Confidence 4565 57999999 67777777654322 2 1345 3445667766 4441 0
Q ss_pred -------CCcCCCCCCCceecC
Q 027582 98 -------GKMSASDPNSAIYVT 112 (221)
Q Consensus 98 -------~KMSkS~~~s~I~L~ 112 (221)
.|||||.+| .|.+.
T Consensus 596 ~~~~~~~~KMSKS~GN-~v~p~ 616 (842)
T TIGR00396 596 ELVVVGYEKMSKSKGN-GIDPQ 616 (842)
T ss_pred cccccchhhhhhcCCC-cCCHH
Confidence 199999986 66553
No 73
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=88.37 E-value=0.28 Score=46.60 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=44.1
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCC
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 105 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~ 105 (221)
|+|..|.|+..+-..=+-+.+.||.+.|...|.++|.+-+| +||||++.
T Consensus 208 THviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~~g--~kLSKr~~ 256 (472)
T COG0008 208 THVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDG--KKLSKRKG 256 (472)
T ss_pred ceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecCCC--CeecCccC
Confidence 68999999999988889999999999999999999998444 69999986
No 74
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=88.22 E-value=0.064 Score=49.13 Aligned_cols=67 Identities=24% Similarity=0.444 Sum_probs=32.3
Q ss_pred ccccCCCCchH---HHHHHHHHH-HHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582 55 CLIPCAIDQDP---YFRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 124 (221)
Q Consensus 55 ~~vpvG~DQ~~---h~~laR~ia-~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k 124 (221)
++-|.|.|+.. -...+.+|| +=||.+.|..+..-++ ++.|. +|||||.+| .|.+.| +|+.++--+-+
T Consensus 236 dfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~-~~~g~-~kmSsSkG~-~~t~~e~L~~~~PE~lr~l~~~ 311 (360)
T PF01921_consen 236 DFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFF-LDKGG-GKMSSSKGN-GITPEEWLEYAPPESLRYLMAR 311 (360)
T ss_dssp SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--E-EES----------------HHHHHTTS-HHHHHHHHHC
T ss_pred eeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEE-EeCCC-cccccCCCC-ccCHHHHHHhcCHHHHHHHHcc
Confidence 46899999888 899999999 6789888877664432 34553 599999986 555543 56666654444
No 75
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=87.93 E-value=0.34 Score=45.25 Aligned_cols=52 Identities=23% Similarity=0.162 Sum_probs=30.0
Q ss_pred ccCCCCch-HHHHHHHHHHHH-hCC-CCccccccCcccCCCCCCCCcCCCCCCCceec
Q 027582 57 IPCAIDQD-PYFRMTRDVAPR-IGY-HKPALIESSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 57 vpvG~DQ~-~h~~laR~ia~~-~n~-~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
--+|.|-. +|+|--+-...- +|. +-+....+......+| +|||||.+| .|.+
T Consensus 245 h~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G--~KMSKSlGN-~i~~ 299 (411)
T TIGR03447 245 QGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDG--EKMSKSLGN-LVFV 299 (411)
T ss_pred ccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCC--CCccCcCCC-CCCH
Confidence 35677743 566544444333 343 2233444444556677 799999986 7766
No 76
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=87.48 E-value=0.4 Score=46.09 Aligned_cols=55 Identities=25% Similarity=0.409 Sum_probs=33.0
Q ss_pred ccccCCCCchHHHH-HHHHHHHHhC--CCCc-cccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 55 CLIPCAIDQDPYFR-MTRDVAPRIG--YHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~-laR~ia~~~n--~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
.+...|.|+.+++. +--.+..-.+ .+.| .++.+.++. ++| +|||||.+| .|...|
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~G--~KMSKS~GN-~I~p~d 347 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LEG--GKFSKSRGW-GIWVDD 347 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-ECC--eeeccCCCc-ccCHHH
Confidence 35678999986443 3333333333 4445 344456664 566 799999986 666543
No 77
>PLN02563 aminoacyl-tRNA ligase
Probab=86.84 E-value=0.29 Score=50.37 Aligned_cols=41 Identities=10% Similarity=-0.023 Sum_probs=26.3
Q ss_pred cCCCCcccccCCCCc-hHHHHHHHHHHHHhC------CCCcc--ccccCcccC
Q 027582 49 GKDHLRCLIPCAIDQ-DPYFRMTRDVAPRIG------YHKPA--LIESSFFPA 92 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ-~~h~~laR~ia~~~n------~~~p~--~l~~~~lp~ 92 (221)
+.+| +..+|.|| .-|+-.+|-....+- ..+|. ++.+.+|-+
T Consensus 615 ~PvD---~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~ 664 (963)
T PLN02563 615 MPVD---LYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILG 664 (963)
T ss_pred CCCc---EeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeec
Confidence 5565 57999999 578777887765432 14553 344566654
No 78
>PLN02882 aminoacyl-tRNA ligase
Probab=86.64 E-value=0.51 Score=49.53 Aligned_cols=51 Identities=22% Similarity=0.100 Sum_probs=33.5
Q ss_pred cccCCCCchHHHHHHHHHHHH---hCCCCcc-ccccCcccCCCCCCCCcCCCCCCCcee
Q 027582 56 LIPCAIDQDPYFRMTRDVAPR---IGYHKPA-LIESSFFPALQGETGKMSASDPNSAIY 110 (221)
Q Consensus 56 ~vpvG~DQ~~h~~laR~ia~~---~n~~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~ 110 (221)
++.-|.||.... +.+-++-. ||.+.|. ++.+.++-.=+| +|||||.+| .|.
T Consensus 570 ~i~eG~Dq~RgW-f~~ll~~s~~l~~~~pfk~VivhG~vlde~G--~KMSKSlGN-vId 624 (1159)
T PLN02882 570 FVAEGLDQTRGW-FYTLMVLSTALFDKPAFKNLICNGLVLAEDG--KKMSKSLKN-YPD 624 (1159)
T ss_pred EEEEecchhhhH-HHHHHHHHHHhcCCCCcceeEEccEEECCCC--CCcccCCCC-CCC
Confidence 678999998854 44444443 4555443 344677665566 799999986 553
No 79
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.53 E-value=0.53 Score=47.57 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=19.9
Q ss_pred cccccCcccCCCCCCCCcCCCCCCCce
Q 027582 83 ALIESSFFPALQGETGKMSASDPNSAI 109 (221)
Q Consensus 83 ~~l~~~~lp~L~g~~~KMSkS~~~s~I 109 (221)
.++.|++|-.-+| .|||||.+| .|
T Consensus 579 ~V~LH~mVRDa~G--RKMSKSLGN-VI 602 (995)
T KOG0432|consen 579 EVLLHGLVRDAHG--RKMSKSLGN-VI 602 (995)
T ss_pred heeechhhccccc--cccchhhcc-cc
Confidence 4567899999998 699999987 44
No 80
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.36 E-value=0.8 Score=44.61 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=50.4
Q ss_pred cCCCCcccccCCCCchHHHHHHHHHHHHhCCCCcc-ccccCcccCC-CCCCCCcCCCCCCCceecCCCHHHHHHHH
Q 027582 49 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPAL-QGETGKMSASDPNSAIYVTDSAKAIKNKI 122 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~-~l~~~~lp~L-~g~~~KMSkS~~~s~I~L~D~p~~I~~KI 122 (221)
+++|. .+--+|.||..|+.-.+.++...|+..+. .+.+-.+... .|...||||-.++ .|.|.|=-+++.+|-
T Consensus 332 ~~~d~-~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~-~vtl~dllde~~era 405 (577)
T COG0018 332 RGFDK-LIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN-VVTLDDLLDEAGERA 405 (577)
T ss_pred cCCCE-EEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc-eEEHHHHHHHHHHHh
Confidence 34543 45679999999999999999999996663 3332222222 2233689999886 999988877777444
No 81
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=85.71 E-value=0.52 Score=45.01 Aligned_cols=60 Identities=27% Similarity=0.369 Sum_probs=39.9
Q ss_pred cCCCCcccccCCCCchH---HHHHHHHHHH-HhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCC
Q 027582 49 GKDHLRCLIPCAIDQDP---YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 114 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~---h~~laR~ia~-~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~ 114 (221)
++.| +-|-|.|+.- -..-+++|++ =||++.|..+..-. -+|+| ++|||||.++ .|.+.|=
T Consensus 228 lgVd---~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~-i~lkg-~~~mSsSkG~-~i~~~dw 291 (521)
T COG1384 228 LGVD---FEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEW-ILLKG-GGKMSSSKGN-VISLSDW 291 (521)
T ss_pred cCcc---cccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEE-EEecC-CcccccCCCc-EEcHHHH
Confidence 4553 5788988653 3456677777 57877776655432 34556 4799999875 7776653
No 82
>PLN02224 methionine-tRNA ligase
Probab=85.16 E-value=5.3 Score=39.29 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=36.8
Q ss_pred cccCCCCchHHHHH-HHHHHHHhCCCCccccc-cCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582 56 LIPCAIDQDPYFRM-TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 124 (221)
Q Consensus 56 ~vpvG~DQ~~h~~l-aR~ia~~~n~~~p~~l~-~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k 124 (221)
+-.+|.|-.+++-+ --...-..|.+-|..+. +.++ .++| +|||||.+| .|+..| +++.++=-+.+
T Consensus 324 v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l-~~eG--~KMSKS~GN-~i~p~e~l~~ygaD~~R~yLl~ 395 (616)
T PLN02224 324 LHLIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFL-TKDG--MKMGKSLGN-TLEPFELVQKFGPDAVRYFFLR 395 (616)
T ss_pred eEEEeecccccHHHHHHHHHHHCCCCCCcEEEecccE-ecCC--ccccccCCc-cCCHHHHHHHcCcHHHHHHHHh
Confidence 45678898875222 11112224566664443 5554 5677 799999986 776554 34444444443
No 83
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=84.75 E-value=0.64 Score=45.41 Aligned_cols=66 Identities=11% Similarity=-0.029 Sum_probs=53.1
Q ss_pred chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCC
Q 027582 29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 105 (221)
Q Consensus 29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~ 105 (221)
.||..+=|.+.- |.+ .+. |+|..|.|...+-..=.-+.+.||.+.|...+.++ .+++| .||||+..
T Consensus 229 gyPtYdfA~vVD----D~l-~gI---THvlRg~E~l~~tp~q~~L~~aLg~~~P~~~h~~r-Ln~~g--~kLSKRkl 294 (601)
T PTZ00402 229 AYPTYDFCCPII----DSV-EGV---THALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSR-LNMEY--SVMSKRKL 294 (601)
T ss_pred eeeccCcceeeE----ccc-cCC---ceEeechhhhhCcHHHHHHHHHhCCCCceEEEEee-EcCCC--CcccccCC
Confidence 788888775554 543 222 78999999999988888999999999999988886 47887 69999974
No 84
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=84.21 E-value=0.63 Score=44.46 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=33.3
Q ss_pred cccCCCCchHHHHHH-HHHHHHhCCCCccc-cccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 56 LIPCAIDQDPYFRMT-RDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 56 ~vpvG~DQ~~h~~la-R~ia~~~n~~~p~~-l~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
+...|.|..+++-+- --+..-.+++.|.. +.+.++. +.| +|||||.+| .|.+.|
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~-~~g--~KmSKS~Gn-~i~~~d 340 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLT-VEG--GKMSKSLGN-VVDPSD 340 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEE-ECC--ceecccCCc-eecHHH
Confidence 568999999864332 12233345555533 3455554 345 799999986 786654
No 85
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=84.16 E-value=0.46 Score=48.02 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=33.0
Q ss_pred cCCCCcccccCCCCc-hHHHHHHHHHHHHhC------CCCc--cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582 49 GKDHLRCLIPCAIDQ-DPYFRMTRDVAPRIG------YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 112 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ-~~h~~laR~ia~~~n------~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~ 112 (221)
|.+| +...|.|| .-|+-.+|-....+- ...| .++++.+| |||||.+| .|...
T Consensus 522 ~P~D---ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v--------KMSKS~GN-~i~p~ 582 (805)
T PRK00390 522 LPVD---QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV--------KMSKSKGN-VVDPD 582 (805)
T ss_pred CCCc---EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE--------EeCCCCCC-CCCHH
Confidence 4565 57899999 577777775543221 1344 34455665 99999987 66543
No 86
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=83.52 E-value=1.3 Score=42.98 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=44.5
Q ss_pred CCCCcccccCCCCchHHHHHHHHHHHHhCCCCcc-c--cccCcccCCCCCCCCcCCCCCCCceecCCCHHH
Q 027582 50 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA-L--IESSFFPALQGETGKMSASDPNSAIYVTDSAKA 117 (221)
Q Consensus 50 ~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~-~--l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~ 117 (221)
+.|. .+-.+|.||..|+.-...+++.+|+..+. + +...+|- +.| +||||-.++ .|.|.|=-++
T Consensus 323 ~~d~-~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g--~kmStR~G~-~v~l~dLlde 388 (562)
T PRK12451 323 GFDK-ALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDG--KKMSTRKGR-VVLLEEVLEE 388 (562)
T ss_pred CCCE-EEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCC--CCCcCCCCC-eeEHHHHHHH
Confidence 4442 35589999999999999999999975332 2 2334453 455 699999885 8887655444
No 87
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=83.37 E-value=0.87 Score=48.02 Aligned_cols=53 Identities=23% Similarity=0.156 Sum_probs=34.0
Q ss_pred cCCCCcccccCCCCchHHH---HHHHHHHHHhCCCCc--cccccCcccCCCCCCCCcCCCCCCCce
Q 027582 49 GKDHLRCLIPCAIDQDPYF---RMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAI 109 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~h~---~laR~ia~~~n~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I 109 (221)
|.+| +++-|.||.... ++..-++ -||. .| .++.+.++..-+| +|||||.+| .|
T Consensus 672 fPaD---~i~eG~Dq~rgWf~s~l~~s~~-l~~~-~PfK~VlvHG~Vld~dG--~KMSKSlGN-vI 729 (1205)
T PTZ00427 672 FPAD---FIAEGLDQTRGWFYTLLVISTL-LFDK-APFKNLICNGLVLASDG--KKMSKRLKN-YP 729 (1205)
T ss_pred CCce---EEEEecchhccHHHHHHHHHHH-hcCC-CCcceeEEccEEEcCCC--CCcccCCCC-CC
Confidence 4565 578999998632 2333332 3443 34 4455777777777 799999986 55
No 88
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.15 E-value=2.4 Score=43.54 Aligned_cols=57 Identities=25% Similarity=0.326 Sum_probs=36.2
Q ss_pred cccCCCCchH---HHHHHHHHHHHhCCCCc--cccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHH
Q 027582 56 LIPCAIDQDP---YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 121 (221)
Q Consensus 56 ~vpvG~DQ~~---h~~laR~ia~~~n~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~K 121 (221)
++.=|.||.. |--|.--.| -||. .| .++.+.++..=+| +|||||.+| +| +|.+|.+|
T Consensus 558 ~~lEGsDQ~RGWF~Ssl~~s~a-~~~~-aPYk~vltHGfvlDe~G--rKMSKSlGN-~v----~P~~V~~~ 619 (933)
T COG0060 558 FYLEGSDQTRGWFYSSLLTSTA-LFGR-APYKNVLTHGFVLDEKG--RKMSKSLGN-VV----DPQDVIDK 619 (933)
T ss_pred EEEEeccccchhHHHHHHHHHH-HcCC-chHHHHhhcccEECCCC--CCccccCCC-cC----CHHHHHHh
Confidence 5788999964 333333332 3442 34 5677888877777 799999987 44 45555554
No 89
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=80.93 E-value=1 Score=43.30 Aligned_cols=65 Identities=8% Similarity=0.011 Sum_probs=51.0
Q ss_pred chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCC
Q 027582 29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 104 (221)
Q Consensus 29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~ 104 (221)
.||..+=|.+.- |.+. +. |+|..|.|...+-..=.-+.+.+|.+.|.. +++...++.| .||||+.
T Consensus 187 ~~PtY~fA~~VD----D~l~-gI---THviRg~E~~~~t~~q~~l~~aLg~~~P~~-~~f~rln~~~--~kLSKR~ 251 (523)
T PLN03233 187 AYPTYDLACPIV----DSIE-GV---THALRTTEYDDRDAQFFWIQKALGLRRPRI-HAFARMNFMN--TVLSKRK 251 (523)
T ss_pred ceeccCCceeee----cccc-CC---CeEEechhhhcCCHHHHHHHHHhCCCCCee-eeeEEECCCC--CcccccC
Confidence 488888886665 5432 22 789999999999888888999999988886 4466677777 6999996
No 90
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=80.62 E-value=15 Score=37.43 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=33.2
Q ss_pred ccCCCCchH-HHHHHHHHHHHhC---C---CCcc--ccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 57 IPCAIDQDP-YFRMTRDVAPRIG---Y---HKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 57 vpvG~DQ~~-h~~laR~ia~~~n---~---~~p~--~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
-.+|+|+.. |+..+|-.-+-+. + .+|. ++...+|.+-.| +|||||.+| .|.+.+
T Consensus 530 yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g--~KMSKSKgN-~v~p~~ 592 (814)
T COG0495 530 YIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEG--EKMSKSKGN-VVDPEE 592 (814)
T ss_pred eecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCC--CccccccCC-CCCHHH
Confidence 368888876 5566665544332 1 3343 334567766655 699999986 666544
No 91
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=79.94 E-value=1.6 Score=41.20 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=54.2
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCce-ecC---CCHHHHHHHHhhcc
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI-YVT---DSAKAIKNKINKYA 126 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I-~L~---D~p~~I~~KI~k~A 126 (221)
|+|.-|.|....--.=.-|.+.||.+.|...|.|+|-+-+| +|+||.++..+| .+- =.|+.|..-+....
T Consensus 198 THViRG~d~l~~t~~q~~l~~alg~~~P~f~H~pli~~~~g--~KLSKR~g~~sv~~~r~~G~~Peai~n~la~lG 271 (445)
T PRK12558 198 THIIRGEDHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADG--KGLSKRLGGLSIRSLREDGIEPMAIASLLARLG 271 (445)
T ss_pred CEEEechhhhhCCHHHHHHHHHhCCCCCeEEEcccccCCCc--ccccccCCCcCHHHHHHCCCCHHHHHHHHHHHc
Confidence 68999999888777777788889999999999999999887 699999864333 122 24788887776633
No 92
>PLN02627 glutamyl-tRNA synthetase
Probab=79.76 E-value=1.7 Score=42.00 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=52.7
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCcee-cC---CCHHHHHHHHhh
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VT---DSAKAIKNKINK 124 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L~---D~p~~I~~KI~k 124 (221)
|+|.-|.|....--.=.-|.+.||.+.|...|.|+|.+-+| +||||.++...|. +. =.|+.|..-+..
T Consensus 251 THViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g--~KLSKR~~~~~v~~~r~~G~~PeAi~nyla~ 322 (535)
T PLN02627 251 THVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDR--SKLSKRHGATSVGQFREMGYLPDAMVNYLAL 322 (535)
T ss_pred cEEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCC--CccccccCCccHHHHHHCCCCHHHHHHHHHH
Confidence 68999999887777777788899999999999999999887 6999998633221 21 247777777665
No 93
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=79.70 E-value=0.69 Score=45.70 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=40.1
Q ss_pred hhhccCCCCCCCCcccccCCCCcccccCCCCch-HHH--HHHHHHHHHhCC-CCc-cccccCcccCCCCCCCCcCCCCCC
Q 027582 32 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQD-PYF--RMTRDVAPRIGY-HKP-ALIESSFFPALQGETGKMSASDPN 106 (221)
Q Consensus 32 ~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~-~h~--~laR~ia~~~n~-~~p-~~l~~~~lp~L~g~~~KMSkS~~~ 106 (221)
..||. |||....|| --+|+|-. ||+ |+|.--|- +|. +-+ ..+|+.+| .++| .|||||.+|
T Consensus 258 sam~~--------~~lg~~~DI---h~gG~DL~FPHHeNEiAQseA~-~~~~~~v~y~~H~G~L-~i~G--~KMSKSLGN 322 (651)
T PTZ00399 258 SAMAS--------NILGDPIDI---HSGGIDLKFPHHDNELAQSEAY-FDKHQWVNYFLHSGHL-HIKG--LKMSKSLKN 322 (651)
T ss_pred HHHHH--------HHcCCccee---eccCCCCCCCcchhHHHHHHHh-hCCCCCCcEEEEEEEE-Eecc--chhhhcCCC
Confidence 46777 888877765 47899973 563 44444333 342 222 23444553 4666 699999986
Q ss_pred CceecCC
Q 027582 107 SAIYVTD 113 (221)
Q Consensus 107 s~I~L~D 113 (221)
.|.+.|
T Consensus 323 -fItp~d 328 (651)
T PTZ00399 323 -FITIRQ 328 (651)
T ss_pred -cccHHH
Confidence 666543
No 94
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=79.63 E-value=0.94 Score=40.61 Aligned_cols=50 Identities=24% Similarity=0.168 Sum_probs=26.1
Q ss_pred ccCCCCch-HHHHHHHHHHHHhCCCCccc---cccCcccCCCCCCCCcCCCCCCCceec
Q 027582 57 IPCAIDQD-PYFRMTRDVAPRIGYHKPAL---IESSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 57 vpvG~DQ~-~h~~laR~ia~~~n~~~p~~---l~~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
--+|+|-. ||+|=-+-.++...- +|.+ +|+.+|. ++| +|||||.+| .|.+
T Consensus 210 H~GG~DL~FPHHENEiAqs~a~~g-~~~a~~W~H~g~l~-~~g--~KMSKSlgN-~~~i 263 (300)
T PF01406_consen 210 HGGGIDLIFPHHENEIAQSEAATG-KPFANYWMHNGHLN-VDG--EKMSKSLGN-FITI 263 (300)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHHS-S-SEEEEEEE--EE-ETT--CE--TTTT----BH
T ss_pred EccccccCCCCccchHHHHHHhhC-chHHHHHHHHHHHh-hcC--ccccccCCC-EEEH
Confidence 45677754 688776666665432 4433 4555543 356 799999976 6665
No 95
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=79.21 E-value=0.96 Score=33.55 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=30.6
Q ss_pred cccCCCCchHHHHHHHHHHHHhCC---CCccccccCcccCCCCCCCCcCCCC
Q 027582 56 LIPCAIDQDPYFRMTRDVAPRIGY---HKPALIESSFFPALQGETGKMSASD 104 (221)
Q Consensus 56 ~vpvG~DQ~~h~~laR~ia~~~n~---~~p~~l~~~~lp~L~g~~~KMSkS~ 104 (221)
+++.|.|+.+++++.|. .+.|. +.|..+..+..+ +++ ..||||+
T Consensus 59 ~~~~G~~~~~~~~~e~~--~~~n~~l~~~~e~v~~~~~~-~~~--~~iSSs~ 105 (105)
T cd02156 59 ISVCGEDFQQNRELYRW--VKDNITLPVDPEQVELPRLN-LET--TVMSKRK 105 (105)
T ss_pred HHHHHhhhhhchhHHHH--HHHhcCCCCCCeEEEccccc-cCc--eeeccCC
Confidence 68999999999999997 23232 445555555444 555 5899984
No 96
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=79.16 E-value=1.3 Score=38.38 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=51.4
Q ss_pred cchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCC
Q 027582 28 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 105 (221)
Q Consensus 28 l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~ 105 (221)
+.||..+=|.+.- |.+ .+. ++|..|.|-..+-..=.-+.+.||.+.|...|.|+|.. .| .||||.+.
T Consensus 106 ~i~ptY~la~vVD----D~~-~gI---ThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~-~~--~kLSKR~~ 172 (240)
T cd09287 106 RVWPTLNFAVAVD----DHL-LGV---THVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKI-EG--GKLSTSKI 172 (240)
T ss_pred EEEEccccceeee----ccc-cCC---CeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecC-CC--Ceeccccc
Confidence 4577777664333 543 333 68999999998888888899999999999999888863 45 79999973
No 97
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=78.86 E-value=1 Score=41.06 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=43.2
Q ss_pred cCCCCcccccCCCCchHHHHHHHHHHHHhCCC-C-ccc--cccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHH
Q 027582 49 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-K-PAL--IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~-~-p~~--l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~ 120 (221)
+++|. .+-.+|.||..|+.-...+++.+|+. + ..+ +...++-+-+|. .|||+..++ .|.|.|=-++..+
T Consensus 236 ~~~d~-~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk-~~mstR~G~-~i~l~dllde~~~ 308 (354)
T PF00750_consen 236 YGFDK-IIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGK-VKMSTRKGN-VITLDDLLDEAVE 308 (354)
T ss_dssp SS-SE-EEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBE-ESS-TTTTS-STBHHHHHHHHHH
T ss_pred hcccc-EEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCC-ccccCCCCC-ceEHHHHHHHHHH
Confidence 55653 45689999999999999999999972 1 122 223444444552 379999876 8887544343333
No 98
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=78.05 E-value=1.5 Score=41.30 Aligned_cols=134 Identities=19% Similarity=0.116 Sum_probs=79.9
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCcee-c---CCCHHHHHHHHhhccccC
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIY-V---TDSAKAIKNKINKYAFSG 129 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L---~D~p~~I~~KI~k~A~td 129 (221)
|+|.=|.|....--.=.-|.+.||.+.| ...|.|++.+-+| +|+||.++..+|. + -=.|+.|..-+.....+.
T Consensus 192 ThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpli~~~~g--~KLSKR~~~~~v~~~r~~G~~PeAi~n~l~~lG~~~ 269 (433)
T PRK12410 192 SLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNEEG--KKMSKRDNASSVKWLLEQGFLPSAIANYLILLGNKT 269 (433)
T ss_pred CEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEeeeeeCCCC--CeeecccChhhHHHHHHCCCCHHHHHHHHHHhCCCC
Confidence 6899999998877777778889999764 8889999999888 7999998643222 1 123666766665522111
Q ss_pred CcchhhhhhhcCCCccchhHHHHHhhhc----------CChHhHHHHHHHHhcCCCChHHHHHHHH---HHHHHHhHHHH
Q 027582 130 GQESVELHRKLGANLEVDIPVKYLSFFL----------EDDAELEHIKKEYGAGGMLTGEVKQRLA---KVLTELVERHQ 196 (221)
Q Consensus 130 ~~~~~~~~~~~~~~p~v~~~~~~l~~~~----------~~~~~~eel~~~y~~g~~~~~~lK~~la---e~l~~~l~pir 196 (221)
+ .++..+-.++..|. .+.+.+..+...|-.. +...++...+. +.+...+.-+|
T Consensus 270 ~-------------~e~~~~~eli~~F~~~~i~~~~~~~d~~kL~~~N~~~i~~-~~~~~l~~~~~~~~~~~~~~~~l~~ 335 (433)
T PRK12410 270 P-------------KEIFTLEEAIEWFDIEKISKSPAKFDLKKLRFINREHLKM-LDDERLSKLLGFKDKDLGGLAKLYL 335 (433)
T ss_pred c-------------ccccCHHHHHHhCCHhhCCCccccCCHHHHHHHHHHHHHh-CCHHHHHHHHhhhhHHHHHHHHHHH
Confidence 1 01111112222221 0345566666666543 56666655442 23455556666
Q ss_pred HHHHHHhH
Q 027582 197 VARAAVTD 204 (221)
Q Consensus 197 e~~~~~~~ 204 (221)
+|.+.+.+
T Consensus 336 ~r~~~l~d 343 (433)
T PRK12410 336 QEASTLNE 343 (433)
T ss_pred HhcCcHHH
Confidence 66665443
No 99
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=74.08 E-value=1.7 Score=41.64 Aligned_cols=52 Identities=15% Similarity=-0.006 Sum_probs=29.2
Q ss_pred ccCCCCch-HHHHHHHHHHHH-hCCCCccccccCcccCCCCCCCCcCCCCCCCceec
Q 027582 57 IPCAIDQD-PYFRMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 57 vpvG~DQ~-~h~~laR~ia~~-~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
--+|.|-. ||+|--.-.+.. .|.+-+....+.....++| +|||||.+| .|.+
T Consensus 237 H~GG~DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g--~KMSKSlGN-~itl 290 (490)
T PRK14536 237 HIGGVDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNK--GKMSKSAGQ-FLTL 290 (490)
T ss_pred EeccccCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecC--ccccccCCC-cccH
Confidence 45666643 566554444433 2433333333333345666 699999986 7776
No 100
>PLN02946 cysteine-tRNA ligase
Probab=74.01 E-value=1.1 Score=43.53 Aligned_cols=50 Identities=18% Similarity=0.090 Sum_probs=27.3
Q ss_pred cCCCCch-HHHHHHHHHHHH-hCCCC-ccccccCcccCCCCCCCCcCCCCCCCceec
Q 027582 58 PCAIDQD-PYFRMTRDVAPR-IGYHK-PALIESSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 58 pvG~DQ~-~h~~laR~ia~~-~n~~~-p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
-+|+|-. ||+|--+..... .|.+- ..-+|+.+|. ++| +|||||.+| .|.+
T Consensus 282 ~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v~-~~G--~KMSKSlGN-~itl 334 (557)
T PLN02946 282 GGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVT-VDS--EKMSKSLGN-FFTI 334 (557)
T ss_pred ccccccCCCcccchHHHHHHHhCCCCCceeeEeeEEE-eCC--CCcCCcCCC-cCCH
Confidence 4666643 455544333332 23211 1235666766 777 799999876 5544
No 101
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.58 E-value=1.7 Score=41.16 Aligned_cols=58 Identities=24% Similarity=0.228 Sum_probs=32.5
Q ss_pred cCCCC-chHHHHHHHHHHHHhCCCCccc---cccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHH
Q 027582 58 PCAID-QDPYFRMTRDVAPRIGYHKPAL---IESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK 119 (221)
Q Consensus 58 pvG~D-Q~~h~~laR~ia~~~n~~~p~~---l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~ 119 (221)
-+|.| +-||+|=-.--++-..-.+|.+ +|+.+| ..+| +|||||.+| -|.+.| +|++++
T Consensus 226 gGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l-~i~g--eKMSKSLGN-fiti~d~l~~~~p~~lR 292 (464)
T COG0215 226 GGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFL-NIDG--EKMSKSLGN-FITVRDLLKKYDPEVLR 292 (464)
T ss_pred cCcccccCCCcccHHHHHHhhhCCCcceeEeEEccee-eecC--cCcccccCC-eeEHHHHHhhcCHHHHH
Confidence 35555 4577764433333333224533 455554 3456 799999986 776654 465555
No 102
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=72.34 E-value=1.3 Score=39.78 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=50.9
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCce------ecCCCHHHHHHHHhh
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI------YVTDSAKAIKNKINK 124 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I------~L~D~p~~I~~KI~k 124 (221)
|+|.-|.|....-..=.-|.+.||.+.|...|.+.+.+.+| +|+||++....| .-.++|+.+..-+++
T Consensus 201 THViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g--~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~ 274 (314)
T PF00749_consen 201 THVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDG--KKLSKRKGAKSIELGDYREWGDPPEATLNYLAR 274 (314)
T ss_dssp SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTS--SBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHH
T ss_pred CeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCC--cEechhhccccccccccccCCCCHHHHHHHHHH
Confidence 78999999998888888899999998899999999999888 799999864332 223445555544444
No 103
>PLN02859 glutamine-tRNA ligase
Probab=72.10 E-value=2.9 Score=42.18 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=53.7
Q ss_pred cchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCC
Q 027582 28 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 105 (221)
Q Consensus 28 l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~ 105 (221)
.+||..-=|.+.. |.+.. - |||.+|.|...+-..=.-+...||...|...+.++ .+++| .||||...
T Consensus 439 ~iyPtYdFA~~vd----D~leg-I---THvLRg~E~~~~~~~y~wl~~aLg~~~P~~~~f~r-Ln~~~--t~LSKRkl 505 (788)
T PLN02859 439 CIYPSYDYAHCIV----DSLEN-I---THSLCTLEFETRRASYYWLLDSLGLYQPYVWEYSR-LNVTN--TVMSKRKL 505 (788)
T ss_pred EEEeccccccccc----ccccC-C---ceEeechhhhcCCHHHHHHHHHcCCCCCcEEeeee-ECCCC--CcccCcCc
Confidence 4599998887777 44322 1 78999999998888888889999998999888774 57887 69999974
No 104
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=68.54 E-value=1.8 Score=42.93 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=16.7
Q ss_pred cccCcccCCCCCCCCcCCCCCCCceec
Q 027582 85 IESSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 85 l~~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
+|+.+|. ++| +|||||.+| .|.+
T Consensus 497 mHnG~V~-vdG--eKMSKSLGN-~it~ 519 (699)
T PRK14535 497 LHNGFIR-VDG--EKMSKSLGN-FFTI 519 (699)
T ss_pred EECCeEe-eCC--CccCCCCCC-cCCH
Confidence 4566665 777 799999886 5554
No 105
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=68.31 E-value=3.3 Score=42.26 Aligned_cols=51 Identities=25% Similarity=0.222 Sum_probs=34.5
Q ss_pred cccCCCCchHHHHHHHHHHHHhCC--CCcc--ccccCcccCCCCCCCCcCCCCCCCcee
Q 027582 56 LIPCAIDQDPYFRMTRDVAPRIGY--HKPA--LIESSFFPALQGETGKMSASDPNSAIY 110 (221)
Q Consensus 56 ~vpvG~DQ~~h~~laR~ia~~~n~--~~p~--~l~~~~lp~L~g~~~KMSkS~~~s~I~ 110 (221)
+.+.|-|=.. +=.+|-+...+.+ ..|. ++.|.++-+=+| .|||||.+| .|.
T Consensus 481 llvtG~DIIf-fWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G--~KMSKS~GN-vID 535 (877)
T COG0525 481 LLVTGHDIIF-FWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQG--RKMSKSKGN-VID 535 (877)
T ss_pred cccccchhhH-HHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCC--CCCcccCCC-cCC
Confidence 4677888554 4567777765544 4553 344677777787 799999987 554
No 106
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=67.78 E-value=1.3 Score=40.93 Aligned_cols=53 Identities=25% Similarity=0.253 Sum_probs=29.7
Q ss_pred ccccCCCCchHHHHHHH-HHHHHhCCCCccccc-cCcccCCCCCCCCcCCCCCCCceec
Q 027582 55 CLIPCAIDQDPYFRMTR-DVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR-~ia~~~n~~~p~~l~-~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
.+...|.|-.+++.+-= -+.-..|.+.|..+. +.++. ++| +|||||.+| .|+.
T Consensus 284 ~v~~iGkDi~~fH~i~~pa~l~a~~~~lP~~i~~~~~~~-~~g--~K~SkS~gn-~i~~ 338 (391)
T PF09334_consen 284 IVHFIGKDIIRFHAIYWPAMLLAAGLPLPRRIVVHGFLT-LDG--EKMSKSRGN-VIWP 338 (391)
T ss_dssp EEEEEEGGGHHHHHTHHHHHHHHCTB---SEEEEE--EE-ETT--CCEETTTTE-SSBH
T ss_pred EEEEEccchhHHHHHHhHHHHhcccCCCCCEEEeeeeEE-ECC--eeccccCCc-ccCH
Confidence 35678888877654321 111226666776554 44544 577 699999876 7765
No 107
>PLN02907 glutamate-tRNA ligase
Probab=67.03 E-value=3.5 Score=41.34 Aligned_cols=65 Identities=11% Similarity=0.021 Sum_probs=49.9
Q ss_pred chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCC
Q 027582 29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 104 (221)
Q Consensus 29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~ 104 (221)
.||..+-|.+.- |.+. + | |+|..|.|...+-..=.-+.+.+|.+.|...+..+ .+++| .||||+.
T Consensus 389 ~~PtY~fa~~vd----D~~~-g--I-ThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~-l~~~~--~~lSKR~ 453 (722)
T PLN02907 389 VYPTYDFACPFV----DALE-G--V-THALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSR-LNFVY--TLLSKRK 453 (722)
T ss_pred eeeccCCceEEE----cccC-C--C-ceEeecHhhhhChHHHHHHHHHcCCCCCeeEEEEE-EcCCC--ccccccc
Confidence 488888886554 4432 2 2 78999999999998888999999998886655444 36776 6999997
No 108
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=66.80 E-value=2.3 Score=40.57 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=30.2
Q ss_pred cccCCCCch-HHHHHHHHHHHHh-CCCCccc-cccCcccCCCCCCCCcCCCCCCCceec
Q 027582 56 LIPCAIDQD-PYFRMTRDVAPRI-GYHKPAL-IESSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 56 ~vpvG~DQ~-~h~~laR~ia~~~-n~~~p~~-l~~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
+--+|.|-. ||+|--+-.+... |.+-+.. +|+.+| .++| +|||||.+| .|.+
T Consensus 236 IH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l-~~~g--~KMSKSlGN-~i~l 290 (481)
T PRK14534 236 IHLGGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFL-IMEY--EKMSKSNNN-FITI 290 (481)
T ss_pred EEecccccCCCcchhHHHHHhhhcCCCcceEEEEecEE-EecC--ceecccCCC-cccH
Confidence 356777765 4666554444432 4333333 344444 3566 799999986 6766
No 109
>PLN02610 probable methionyl-tRNA synthetase
Probab=65.14 E-value=3.3 Score=42.01 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=36.8
Q ss_pred cccCCCCchHHHHHH---HHHHHHhCCCCccccc-cCcccCCCCCCCCcCCCCCCCceecCC------CHHHHHHHHhh
Q 027582 56 LIPCAIDQDPYFRMT---RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 124 (221)
Q Consensus 56 ~vpvG~DQ~~h~~la---R~ia~~~n~~~p~~l~-~~~lp~L~g~~~KMSkS~~~s~I~L~D------~p~~I~~KI~k 124 (221)
+..+|.|-..++-+- =-+|--..++.|..+. +.++ .++| +|||||.+| .|+..| +++.++=-+.+
T Consensus 304 ~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l-~~eG--~KMSKS~GN-vV~p~~~i~~~yg~D~lRyyLl~ 378 (801)
T PLN02610 304 YQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYL-NYEG--GKFSKSKGV-GVFGNDAKDTNIPVEVWRYYLLT 378 (801)
T ss_pred EEEEeeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCE-ecCC--ceecCcCCc-ccCHHHHHhccCCchHhHHHhhh
Confidence 457899987776432 1122222234565554 4444 3466 799999986 776432 24555555555
No 110
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=64.66 E-value=4.7 Score=35.00 Aligned_cols=68 Identities=12% Similarity=0.007 Sum_probs=47.9
Q ss_pred ccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCC
Q 027582 27 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 105 (221)
Q Consensus 27 ~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~ 105 (221)
..+||..+=|.+.- |.+ .+. |+|.-|.|....-..=.-+.+.+|.+.|..++...+ +.+| .|+||++.
T Consensus 103 ~~i~ptY~lA~vVD----D~~-~gI---ThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hl-n~~g--~kLSKR~~ 170 (238)
T cd00807 103 WCIYPTYDFAHPIV----DSI-EGI---THSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRL-NLTY--TVMSKRKL 170 (238)
T ss_pred EEEEeccccceEee----ccc-cCC---CeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEE-CCCC--CCccCcCc
Confidence 34577777663332 554 333 689999999887777788889999999975543333 6666 69999975
No 111
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.91 E-value=24 Score=34.43 Aligned_cols=66 Identities=20% Similarity=0.189 Sum_probs=34.0
Q ss_pred cccCCCCchHHHHHHH-HHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582 56 LIPCAIDQDPYFRMTR-DVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 124 (221)
Q Consensus 56 ~vpvG~DQ~~h~~laR-~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k 124 (221)
+-.+|.|-..++-+-= -+.-..+.+.|..+.+.----+.| +|||||.+| .|+..+ +++.++=-+.+
T Consensus 291 vhfIGKDii~FHav~wPamL~~~~~~lP~~i~ahg~l~~~G--~KmSKSrG~-~V~~~~~~~~~~~D~lRYyL~~ 362 (558)
T COG0143 291 VHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLTLEG--QKMSKSRGN-VVDPDELLEQYGVDALRYYLAR 362 (558)
T ss_pred EEEeccccCcchhhHHHHHHHhCCCCCCCEEEeeeeEEECC--ccccccCCc-EEeHHHHHHHcCchHhHHHHHH
Confidence 3467777665544321 111222334554444222223456 699999986 777554 35555544444
No 112
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.18 E-value=16 Score=36.99 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=19.4
Q ss_pred CCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhh
Q 027582 98 GKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVE 135 (221)
Q Consensus 98 ~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~ 135 (221)
.|||||.+| ..-|..+-+...--=.+.|+.|.+++++
T Consensus 709 EKMSKSTGN-fmTL~qaieKFgad~tRlalAdaGD~ve 745 (1080)
T KOG0437|consen 709 EKMSKSTGN-FMTLEQAIEKFGADGTRLALADAGDGVE 745 (1080)
T ss_pred hhhccccCC-eeeHHHHHHHhCccceeeeeecccCCcc
Confidence 799999886 4444333332222222235556666554
No 113
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=50.56 E-value=12 Score=36.38 Aligned_cols=66 Identities=14% Similarity=0.057 Sum_probs=49.4
Q ss_pred chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC-CCccccccCcccCCCCCCCCcCCCCC
Q 027582 29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDP 105 (221)
Q Consensus 29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~-~~p~~l~~~~lp~L~g~~~KMSkS~~ 105 (221)
.||..-=|.+.. |.+. +. |+|..|.|...|-..=.-+.+.||. ..|......+| +++| .||||+..
T Consensus 210 iyPtYdfA~~vd----D~l~-gI---THvlRg~E~~~~t~~~~~i~~alg~~~~P~~~~F~rl-n~~~--~~LSKRkl 276 (554)
T PRK05347 210 IYPMYDFAHCIS----DAIE-GI---THSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRL-NLTY--TVMSKRKL 276 (554)
T ss_pred eecCcCccceee----cccc-CC---ceEEeccccccChHHHHHHHHHcCCCCCCceEEEEEE-CCCC--Cccccccc
Confidence 488888776665 5442 22 7899999999998888899999985 46866654444 6777 69999974
No 114
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.21 E-value=20 Score=36.21 Aligned_cols=59 Identities=22% Similarity=0.120 Sum_probs=35.0
Q ss_pred ccccCCCCchH----HHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHH
Q 027582 55 CLIPCAIDQDP----YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 121 (221)
Q Consensus 55 ~~vpvG~DQ~~----h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~K 121 (221)
.++.-|.||.. -.-|+ .+|.+-..|--.++.+.+.-+=.| .|||||.+| .| +|+.|-+.
T Consensus 568 Dv~LEG~DQ~rGWFQSsLLT-svA~q~kAPYk~vivHGFtlDE~G--~KMSKSlGN-Vi----dP~~v~~G 630 (937)
T KOG0433|consen 568 DVYLEGVDQFRGWFQSSLLT-SVAVQNKAPYKKVIVHGFTLDENG--NKMSKSLGN-VV----DPTMVTDG 630 (937)
T ss_pred eeEEecchhcchHHHHHHHH-HHHHhccCCchheeeeeeEecCCc--cchhhcccC-cC----CHHHHhCC
Confidence 35788999963 33344 344443333334555667666666 799999987 43 45555444
No 115
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=43.73 E-value=63 Score=23.14 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=33.1
Q ss_pred CCCccch----hHHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 027582 141 GANLEVD----IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 190 (221)
Q Consensus 141 ~~~p~v~----~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~ 190 (221)
+|+|++. .+..++..+. .+.+.+|+.++|- .+...++..++.-+...
T Consensus 21 gGkP~I~GtRI~V~~Il~~l~-~G~s~eeil~dyp--~Lt~~dI~aal~ya~~~ 71 (79)
T COG2442 21 GGKPCIRGTRIPVWDILEMLA-AGESIEEILADYP--DLTLEDIRAALRYAADR 71 (79)
T ss_pred CCcceEeCceecHHHHHHHHH-CCCCHHHHHHhCC--CCCHHHHHHHHHHHHHH
Confidence 5677653 2344444443 4678999999995 38999999998877765
No 116
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=41.54 E-value=20 Score=34.71 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=47.5
Q ss_pred chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC-CccccccCcccCCCCCCCCcCCCCC
Q 027582 29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDP 105 (221)
Q Consensus 29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~-~p~~l~~~~lp~L~g~~~KMSkS~~ 105 (221)
.||..-=|.+.- |.+. +- |+|..|.|...+-++=.-+...++.. .|......+ .+++| .||||+..
T Consensus 181 iyPtYdfa~~vd----D~l~-gI---THviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~r-ln~~~--~kLSKRk~ 247 (522)
T TIGR00440 181 IYPMYDFTHCIS----DAME-NI---THSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSR-LNLEG--TVLSKRKL 247 (522)
T ss_pred EEeCcCCceeeh----hccC-CC---ceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEE-ECCCC--CCcccccc
Confidence 488887775555 5543 22 78999999999988888888888764 565444333 45676 69999975
No 117
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=40.80 E-value=88 Score=29.33 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=17.1
Q ss_pred ceecCCCHHHHHHHHhhccccCCcc
Q 027582 108 AIYVTDSAKAIKNKINKYAFSGGQE 132 (221)
Q Consensus 108 ~I~L~D~p~~I~~KI~k~A~td~~~ 132 (221)
.|-|+.+ +++.+||.+ |.+++..
T Consensus 237 G~Il~~~-eel~kkin~-aVFPg~q 259 (413)
T COG0112 237 GIILTND-EELAKKINS-AVFPGLQ 259 (413)
T ss_pred eEEEecc-HHHHHHhhh-hcCCccC
Confidence 4444444 899999999 9887763
No 118
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=37.88 E-value=24 Score=33.48 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=59.0
Q ss_pred cchhhhhccCCCCCCCCcccccCC--CCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCC
Q 027582 28 VSFPPVQAVPSFPSSFPHLFSGKD--HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 105 (221)
Q Consensus 28 l~YP~lqaa~~~~~~~~Dil~~~a--d~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~ 105 (221)
..=||+|=.|-|++++.-..--+. .| ++|.=|+...+---=---+-+.||.+.|...|-|+|..-+| +|.||-.+
T Consensus 211 ~gD~VvmKSDgfPTYHfAnVVDDh~M~I-sHViRGeEWlpST~KH~lLYkAfgW~pPkFaHlpLl~n~d~--sKLSKRqg 287 (524)
T KOG1149|consen 211 EGDPVVMKSDGFPTYHFANVVDDHLMGI-SHVIRGEEWLPSTLKHILLYKAFGWQPPKFAHLPLLLNPDG--SKLSKRQG 287 (524)
T ss_pred CCCcEEEecCCCcceeeeeeecchhcch-hheeecchhccccHHHHHHHHHhCCCCCceeeeeeeecCCc--chhhhhcC
Confidence 445889999888877652221111 12 57788877644221112245789999999999999999888 79999976
Q ss_pred CCcee-cCC---CHHHHHHHHhh
Q 027582 106 NSAIY-VTD---SAKAIKNKINK 124 (221)
Q Consensus 106 ~s~I~-L~D---~p~~I~~KI~k 124 (221)
+-.|. +.. =|+.+-.-|-.
T Consensus 288 D~~vs~~~e~G~LPeallN~ial 310 (524)
T KOG1149|consen 288 DASVSHYREQGYLPEALLNYIAL 310 (524)
T ss_pred cchHHHHHHcCCChHHHHHHHHH
Confidence 42222 111 16666666655
No 119
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=36.99 E-value=91 Score=24.98 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=25.8
Q ss_pred HHHHhcCCCC-hHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027582 167 KKEYGAGGML-TGEVKQRLAKVLTELVERHQVARAAVT 203 (221)
Q Consensus 167 ~~~y~~g~~~-~~~lK~~lae~l~~~l~pire~~~~~~ 203 (221)
...|..|+++ ...|++.|++.|.+.+-..-+.|+.+.
T Consensus 100 kNq~vkGK~~~~K~fr~~l~eEl~q~fPe~~~~yr~Ir 137 (147)
T KOG3046|consen 100 KNQYVKGKIDAFKKFRKHLAEELSQEFPELVDPYRSIR 137 (147)
T ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 4456678764 667899999988877666555555554
No 120
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=36.95 E-value=20 Score=34.95 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=46.5
Q ss_pred chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCC
Q 027582 29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 104 (221)
Q Consensus 29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~ 104 (221)
.||..+=|.+.- |.+.. . |+|..|.|....-.--.-+-..+|...|...+.+++..-.| .|+||+.
T Consensus 269 ~~PtYdfA~~VD----D~l~g-I---THviRg~E~~~nT~rq~yl~~~lg~~~P~~~h~~~l~~~~~--~kLskk~ 334 (560)
T TIGR00463 269 VYPTMDFSVPID----DHLLG-V---THVLRGKDHIDNERKQQYIYMYFGWELPEFIHWGRLKINDV--RTLSTSS 334 (560)
T ss_pred EEeccccceEee----cccCC-C---CeEEechhhhcCCHHHHHHHHHcCCCCCeEEEEcceecCCC--cEecchh
Confidence 488888886665 55422 2 68999999877444445566677888888888887665444 5999886
No 121
>PRK07217 replication factor A; Reviewed
Probab=34.77 E-value=1.1e+02 Score=27.76 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=42.5
Q ss_pred HhHHHHHHHHhc-CCCC--hHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHh
Q 027582 161 AELEHIKKEYGA-GGML--TGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMA 212 (221)
Q Consensus 161 ~~~eel~~~y~~-g~~~--~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~ 212 (221)
...++|.+.|++ | +. -.++++.|-..|+++=-|+.|..+.+++.+++++=-
T Consensus 6 ~~aeei~~~~s~lg-vdv~~~~ie~~L~~Lv~ey~VP~~EA~rSv~~~~~~k~g~ 59 (311)
T PRK07217 6 QHAEEIHEQFSDLG-VDVSVEDVEERLDTLVTEFKVPEDEARRSVTNYYLKEAGI 59 (311)
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 356889988876 4 55 889999999988899999999999999888887644
No 122
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=33.59 E-value=1.4e+02 Score=19.83 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=21.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027582 183 RLAKVLTELVERHQVARAAVTDEMVDA 209 (221)
Q Consensus 183 ~lae~l~~~l~pire~~~~~~~~~l~~ 209 (221)
.|+.++..+|.-.+.||....+..+.+
T Consensus 3 elt~~v~~lL~qmq~kFq~mS~~I~~r 29 (54)
T PF06825_consen 3 ELTAFVQNLLQQMQDKFQTMSDQILGR 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888899999999999987764433
No 123
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=24.27 E-value=54 Score=33.33 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=47.3
Q ss_pred chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--CCccccccCcccCCCCCCCCcCCCC
Q 027582 29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--HKPALIESSFFPALQGETGKMSASD 104 (221)
Q Consensus 29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~--~~p~~l~~~~lp~L~g~~~KMSkS~ 104 (221)
.||...=|.+.- |.+. +- |||..|.|...+-..=.-+.+.||. ++|......+++= .| .||||+.
T Consensus 212 i~PtYdfa~~vd----D~l~-gI---THvlRg~E~~~~~~~~~~l~~~l~~~~~~P~~~~f~rl~l-~~--~~lSKRk 278 (771)
T PRK14703 212 IYPMYDFAHPLE----DAIE-GV---THSICTLEFENNRAIYDWVLDHLGPWPPRPRQYEFARLAL-GY--TVMSKRK 278 (771)
T ss_pred cCCCccccceee----cccc-CC---cEEEecHhhhhccHHHHHHHHHhCCCCCCcceeEEEEecc-CC--CcccccC
Confidence 588888776655 5442 22 7899999999999999999999964 3476665444443 45 5999997
No 124
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=23.82 E-value=1.2e+02 Score=19.77 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=17.5
Q ss_pred ChHhHHHHHHHHhcCCCChHHHHHHHH
Q 027582 159 DDAELEHIKKEYGAGGMLTGEVKQRLA 185 (221)
Q Consensus 159 ~~~~~eel~~~y~~g~~~~~~lK~~la 185 (221)
.+.+++||.++|-+ +...+++.+|+
T Consensus 30 ~G~s~eeI~~~yp~--Lt~~~i~aAl~ 54 (56)
T PF04255_consen 30 AGESPEEIAEDYPS--LTLEDIRAALA 54 (56)
T ss_dssp TT--HHHHHHHSTT----HHHHHHHHH
T ss_pred cCCCHHHHHHHCCC--CCHHHHHHHHH
Confidence 57899999999952 88999988876
No 125
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.42 E-value=51 Score=33.34 Aligned_cols=74 Identities=23% Similarity=0.178 Sum_probs=43.0
Q ss_pred CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccc---cccCcccCCCCCC
Q 027582 21 GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPAL---IESSFFPALQGET 97 (221)
Q Consensus 21 ~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~---l~~~~lp~L~g~~ 97 (221)
.+.+.++.-||.=--- .|- |- +.| .++--|.||..-.=.|--+....=+.+|.. +.+..+..-+|
T Consensus 532 GSMPYAq~HyPFenk~-~fe----~~--fPa---dFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG-- 599 (1070)
T KOG0434|consen 532 GSMPYAQRHYPFENKE-EFE----EN--FPA---DFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDG-- 599 (1070)
T ss_pred CCCcchhhcCCccchH-HHh----hc--Cch---HhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEeccc--
Confidence 3567788888754221 111 11 234 367889999875444444444322224433 34677777788
Q ss_pred CCcCCCCCC
Q 027582 98 GKMSASDPN 106 (221)
Q Consensus 98 ~KMSkS~~~ 106 (221)
+||||+..|
T Consensus 600 ~KMSKrlkN 608 (1070)
T KOG0434|consen 600 KKMSKRLKN 608 (1070)
T ss_pred HHHhhhhhc
Confidence 799999754
No 126
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=23.27 E-value=2.4e+02 Score=19.57 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 027582 183 RLAKVLTELVERHQVARAAVTDEMVDA 209 (221)
Q Consensus 183 ~lae~l~~~l~pire~~~~~~~~~l~~ 209 (221)
.|.-++...|..+|+||....+..+.+
T Consensus 16 ~LTs~vQ~lLQq~QDkFQtMSDQII~R 42 (73)
T KOG4117|consen 16 DLTSVVQGLLQQTQDKFQTMSDQIIGR 42 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777888888887766544433
No 127
>PHA02713 hypothetical protein; Provisional
Probab=22.43 E-value=6.5e+02 Score=24.28 Aligned_cols=98 Identities=10% Similarity=0.000 Sum_probs=52.2
Q ss_pred CceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhh---hcCChHhHHHHHHHHhcCCC--------
Q 027582 107 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF---FLEDDAELEHIKKEYGAGGM-------- 175 (221)
Q Consensus 107 s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~---~~~~~~~~eel~~~y~~g~~-------- 175 (221)
..|.|.+-..++.+.|-.|+||+.- + -+|+..++.+ + .-..+.+.+.+|-...+
T Consensus 67 ~~v~l~~v~~~~~~~ll~y~Yt~~i-~------------~~nv~~ll~aA~~l--qi~~l~~~C~~~l~~~l~~~NCl~i 131 (557)
T PHA02713 67 TRVNLQMFDKDAVKNIVQYLYNRHI-S------------SMNVIDVLKCADYL--LIDDLVTDCESYIKDYTNHDTCIYM 131 (557)
T ss_pred ceEEeccCCHHHHHHHHHHhcCCCC-C------------HHHHHHHHHHHHHH--CHHHHHHHHHHHHHhhCCccchHHH
Confidence 4899988777788888889999631 1 1233333332 2 12233334444332222
Q ss_pred -------ChHHHHHHHHHHHHHHhHHH--HHHHHHHhHHHHHHHHhcCCCCCC
Q 027582 176 -------LTGEVKQRLAKVLTELVERH--QVARAAVTDEMVDAFMAVRPLPNM 219 (221)
Q Consensus 176 -------~~~~lK~~lae~l~~~l~pi--re~~~~~~~~~l~~il~~~~~~~~ 219 (221)
.+.+|++...+.|.+.+..+ .+.|.++.-+.|.++|..+...+|
T Consensus 132 ~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l~~lL~~d~~l~v 184 (557)
T PHA02713 132 YHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEILFDIISTNDNVYL 184 (557)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHHHHHhccccccCC
Confidence 23334444445555555444 344445555578888876553333
No 128
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=21.91 E-value=2e+02 Score=22.53 Aligned_cols=43 Identities=9% Similarity=0.201 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcCC--CCCCCC
Q 027582 177 TGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP--LPNMFD 221 (221)
Q Consensus 177 ~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~~--~~~~~~ 221 (221)
.+.+++ .+.+...|..++.-..++..- .|+++|-+.+ .||+|.
T Consensus 83 ae~L~k--v~els~~L~~~~~lL~~~v~~ie~LN~~LP~~~RLep~~~~ 129 (131)
T PF10158_consen 83 AEQLEK--VNELSQQLSRCQSLLNQTVPSIETLNEILPEEERLEPFVWT 129 (131)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhcCCCCCCC
Confidence 334444 566777777788777777664 7888886544 499993
No 129
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.77 E-value=1.3e+02 Score=23.42 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=22.0
Q ss_pred HhcCCC-ChHHHHHHHHHHHHHHhHHHHHHHHH
Q 027582 170 YGAGGM-LTGEVKQRLAKVLTELVERHQVARAA 201 (221)
Q Consensus 170 y~~g~~-~~~~lK~~lae~l~~~l~pire~~~~ 201 (221)
+..|++ ....|+..|++.|.+.+=..++.++.
T Consensus 95 ~~kGK~~a~~~fr~~L~~el~~~fPe~~~~~~~ 127 (128)
T PF09748_consen 95 YVKGKMEAFKSFRDVLAEELASAFPELKEDVRR 127 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHChHHHHHHhh
Confidence 444554 36778888888888777766666543
No 130
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=21.62 E-value=73 Score=22.20 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=16.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHH
Q 027582 165 HIKKEYGAGGMLTGEVKQRLAKVLTEL 191 (221)
Q Consensus 165 el~~~y~~g~~~~~~lK~~lae~l~~~ 191 (221)
||..+|.. ...-++|+.|++.+...
T Consensus 1 eLC~dYse--~tFtEyKKrL~e~l~~k 25 (68)
T PF09164_consen 1 ELCADYSE--NTFTEYKKRLAERLRAK 25 (68)
T ss_dssp HHTTTTTT--S-HHHHHHHHHHHHHHH
T ss_pred Ccchhhhh--ccHHHHHHHHHHHHHHH
Confidence 45667763 46788899888877543
No 131
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=20.70 E-value=68 Score=31.46 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=47.5
Q ss_pred cchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCC
Q 027582 28 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 105 (221)
Q Consensus 28 l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~ 105 (221)
..||..-=|.+.. |-|.. | |||.++.+...+-+.=.-+.+.++..+|.....++ .+++| .||||+..
T Consensus 226 ~iyPtYdFa~~vd----D~l~g---I-THvlct~Ef~~r~~~y~wl~~~l~l~~p~~~ef~r-ln~~~--~~LSKRkl 292 (574)
T PTZ00437 226 CIYPSYDFTHCLI----DSLED---I-DYSLCTLEFETRRESYFWLLEELNLWRPHVWEFSR-LNVTG--SLLSKRKI 292 (574)
T ss_pred EEEccCcccceee----chhcC---C-CEEeeechhhcccHHHHHHHHHhCCcccceEeeee-ecCCC--ceeeccch
Confidence 3688888776666 44322 1 68898887776665555567888888888777666 56666 69999974
Done!