Query 027582
Match_columns 221
No_of_seqs 175 out of 1141
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 20:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tze_A Tryptophanyl-tRNA synth 100.0 1.1E-58 3.7E-63 423.4 15.4 212 1-215 194-405 (406)
2 3hzr_A Tryptophanyl-tRNA synth 100.0 2.7E-58 9.3E-63 418.6 14.9 211 1-215 174-385 (386)
3 3hv0_A Tryptophanyl-tRNA synth 100.0 2E-58 6.8E-63 420.6 13.1 218 2-221 169-386 (393)
4 3i05_A Tryptophanyl-tRNA synth 100.0 1.3E-58 4.3E-63 422.1 9.3 214 2-216 172-386 (395)
5 3foc_A Tryptophanyl-tRNA synth 100.0 4.4E-56 1.5E-60 409.9 13.8 215 2-216 188-450 (451)
6 3jxe_A Tryptophanyl-tRNA synth 100.0 3.7E-55 1.3E-59 398.8 14.0 203 2-216 166-370 (392)
7 1r6u_A Tryptophanyl-tRNA synth 100.0 1.6E-52 5.4E-57 385.8 12.0 210 2-221 205-422 (437)
8 3sz3_A Tryptophanyl-tRNA synth 100.0 4.4E-53 1.5E-57 379.2 6.4 196 2-214 105-316 (341)
9 1r6t_A Tryptophanyl-tRNA synth 100.0 4.6E-52 1.6E-56 386.8 13.0 209 2-220 252-468 (477)
10 2ip1_A Tryptophanyl-tRNA synth 100.0 3.1E-51 1.1E-55 377.3 16.1 211 3-216 199-412 (432)
11 3n9i_A Tryptophanyl-tRNA synth 100.0 4E-52 1.4E-56 373.4 9.8 195 2-214 114-321 (346)
12 3prh_A Tryptophanyl-tRNA synth 100.0 2.9E-51 9.9E-56 372.3 11.1 192 2-214 134-337 (388)
13 3tzl_A Tryptophanyl-tRNA synth 100.0 4.9E-50 1.7E-54 357.3 13.1 189 2-214 102-301 (322)
14 1i6k_A TRPRS, tryptophanyl-tRN 100.0 5.2E-50 1.8E-54 358.0 10.4 192 2-214 100-303 (328)
15 2yy5_A Tryptophanyl-tRNA synth 100.0 2.2E-50 7.6E-55 362.9 7.7 194 2-214 103-321 (348)
16 2g36_A Tryptophanyl-tRNA synth 100.0 3.1E-49 1.1E-53 354.5 12.6 195 2-214 113-317 (340)
17 1yi8_B Tryptophanyl-tRNA synth 100.0 7E-49 2.4E-53 353.5 13.0 196 2-214 122-327 (351)
18 3a04_A Tryptophanyl-tRNA synth 100.0 2.3E-48 8E-53 352.4 14.7 196 3-213 164-369 (372)
19 2el7_A Tryptophanyl-tRNA synth 100.0 2.9E-48 9.8E-53 347.9 12.2 192 2-214 104-306 (337)
20 3vgj_A Tyrosyl-tRNA synthetase 100.0 1.2E-45 4.2E-50 334.6 14.1 191 3-212 156-368 (373)
21 3p0j_A Tyrosyl-tRNA synthetase 100.0 3.9E-44 1.3E-48 345.8 14.1 200 3-214 140-362 (690)
22 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.4E-43 4.6E-48 321.6 10.6 178 2-202 135-361 (375)
23 2cya_A Tyrosyl-tRNA synthetase 100.0 2.3E-43 7.7E-48 319.0 12.0 176 3-201 132-347 (364)
24 2j5b_A Tyrosyl-tRNA synthetase 100.0 4.6E-43 1.6E-47 315.4 10.4 179 3-203 139-332 (348)
25 2cyb_A Tyrosyl-tRNA synthetase 100.0 6.8E-41 2.3E-45 298.4 12.3 173 3-201 127-321 (323)
26 1n3l_A Tyrosyl-tRNA synthetase 100.0 4.9E-41 1.7E-45 304.5 9.7 177 3-200 135-329 (372)
27 2zp1_A Tyrosyl-tRNA synthetase 100.0 1.3E-40 4.5E-45 295.7 10.9 170 3-201 120-308 (314)
28 2dlc_X Tyrosyl-tRNA synthetase 100.0 1.5E-39 5.3E-44 296.7 12.7 191 3-212 139-352 (394)
29 1h3f_A Tyrosyl-tRNA synthetase 100.0 3.4E-38 1.2E-42 290.5 3.9 174 3-213 142-326 (432)
30 3p0j_A Tyrosyl-tRNA synthetase 100.0 3.5E-37 1.2E-41 297.4 9.7 176 2-201 481-670 (690)
31 2yxn_A Tyrosyl-tRNA synthetase 100.0 2.8E-37 9.5E-42 275.1 7.2 164 4-201 148-320 (322)
32 2pid_A Tyrosyl-tRNA synthetase 100.0 4.1E-37 1.4E-41 277.3 8.3 167 4-203 162-341 (356)
33 2jan_A Tyrosyl-tRNA synthetase 100.0 1.9E-35 6.6E-40 271.8 10.8 166 4-202 140-318 (432)
34 1y42_X Tyrosyl-tRNA synthetase 100.0 1.4E-35 4.8E-40 270.2 9.6 168 3-203 189-380 (392)
35 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 1.3E-34 4.5E-39 265.9 9.3 165 4-202 140-317 (420)
36 2ts1_A Tyrosyl-tRNA synthetase 100.0 1.1E-34 3.9E-39 266.0 8.6 165 4-202 139-316 (419)
37 2cfo_A Glutamyl-tRNA synthetas 97.0 0.00039 1.3E-08 64.8 3.6 68 55-124 205-276 (492)
38 1nzj_A Hypothetical protein YA 96.8 0.0014 4.7E-08 57.2 5.4 66 57-124 188-253 (298)
39 1j09_A Glutamyl-tRNA synthetas 96.5 0.0017 5.8E-08 60.1 4.2 89 26-124 164-272 (468)
40 3al0_C Glutamyl-tRNA(Gln) amid 96.5 0.0015 5E-08 62.2 3.5 68 55-124 317-388 (592)
41 3afh_A Glutamyl-tRNA synthetas 96.2 0.003 1E-07 58.7 3.9 68 55-124 213-284 (488)
42 2ja2_A Glutamyl-tRNA synthetas 96.0 0.003 1E-07 58.9 3.0 89 26-124 173-286 (498)
43 2csx_A Methionyl-tRNA syntheta 95.5 0.0043 1.5E-07 57.2 2.0 65 56-124 253-324 (497)
44 2d5b_A Methionyl-tRNA syntheta 95.3 0.0056 1.9E-07 56.4 2.0 66 56-124 254-326 (500)
45 2o5r_A Glutamyl-tRNA synthetas 95.0 0.0094 3.2E-07 55.2 2.5 68 55-124 220-291 (481)
46 3fnr_A Arginyl-tRNA synthetase 94.3 0.0062 2.1E-07 56.2 -0.7 57 56-113 239-298 (464)
47 2x1l_A Methionyl-tRNA syntheta 93.1 0.017 5.8E-07 53.5 0.0 53 56-112 268-322 (524)
48 3u1f_A Methionyl-tRNA syntheta 92.9 0.029 1E-06 52.1 1.4 50 56-111 281-334 (542)
49 1ffy_A Isoleucyl-tRNA syntheta 92.9 0.044 1.5E-06 54.5 2.6 56 49-111 547-606 (917)
50 3kfl_A Methionyl-tRNA syntheta 92.4 0.03 1E-06 52.6 0.7 52 56-113 297-352 (564)
51 1irx_A Lysyl-tRNA synthetase; 92.1 0.026 8.9E-07 52.5 -0.2 65 58-124 235-308 (523)
52 1li5_A Cysrs, cysteinyl-tRNA s 91.8 0.044 1.5E-06 50.4 1.0 64 56-124 223-295 (461)
53 4dlp_A Aminoacyl-tRNA syntheta 91.7 0.037 1.3E-06 51.5 0.4 52 56-113 279-334 (536)
54 3c8z_A Cysteinyl-tRNA syntheta 91.6 0.036 1.2E-06 50.1 0.2 52 56-111 247-302 (414)
55 1gax_A Valrs, valyl-tRNA synth 91.5 0.029 9.9E-07 55.5 -0.6 56 49-112 480-540 (862)
56 4g6z_A Glutamate-tRNA ligase; 91.1 0.53 1.8E-05 43.6 7.5 68 55-124 222-293 (490)
57 3h99_A Methionyl-tRNA syntheta 90.8 0.057 1.9E-06 50.5 0.7 64 57-124 304-374 (560)
58 1ile_A Ilers, isoleucyl-tRNA s 90.1 0.12 4.3E-06 50.5 2.5 70 49-124 543-620 (821)
59 3aii_A Glutamyl-tRNA synthetas 90.0 0.054 1.9E-06 51.0 -0.2 67 29-106 270-336 (553)
60 1wz2_A Leucyl-tRNA synthetase; 90.0 0.11 3.7E-06 52.0 1.9 68 49-123 602-678 (967)
61 1wkb_A Leucyl-tRNA synthetase; 89.3 0.11 3.7E-06 50.8 1.3 67 49-122 602-677 (810)
62 4gri_A Glutamate--tRNA ligase; 87.8 0.27 9.4E-06 45.7 2.9 50 55-106 231-280 (512)
63 1iq0_A Arginyl-tRNA synthetase 85.0 0.11 3.7E-06 49.2 -1.4 53 57-113 351-407 (592)
64 3tqo_A Cysteinyl-tRNA syntheta 84.1 0.19 6.6E-06 46.2 -0.1 64 56-124 226-298 (462)
65 4arc_A Leucine--tRNA ligase; l 83.7 0.47 1.6E-05 47.0 2.4 40 49-91 542-590 (880)
66 2zue_A Arginyl-tRNA synthetase 82.2 0.41 1.4E-05 45.6 1.3 55 56-114 380-440 (629)
67 1f7u_A Arginyl-tRNA synthetase 80.2 0.55 1.9E-05 44.6 1.4 57 56-118 368-425 (607)
68 1rqg_A Methionyl-tRNA syntheta 78.7 0.48 1.7E-05 45.8 0.5 63 57-124 293-373 (722)
69 3foc_A Tryptophanyl-tRNA synth 76.4 0.64 2.2E-05 42.6 0.6 25 45-69 223-249 (451)
70 2v0c_A Aminoacyl-tRNA syntheta 75.0 0.8 2.7E-05 45.3 0.9 41 49-92 530-579 (878)
71 3sp1_A Cysteinyl-tRNA syntheta 69.3 1.3 4.5E-05 41.1 0.9 52 56-111 256-310 (501)
72 1qtq_A GLNRS, protein (glutami 67.7 0.56 1.9E-05 44.1 -1.9 56 45-106 218-274 (553)
73 2hz7_A Glutaminyl-tRNA synthet 48.4 1.5 5.3E-05 43.1 -2.7 66 29-105 247-313 (851)
74 3ci9_A Heat shock factor-bindi 41.6 60 0.002 20.2 4.9 29 182-210 5-33 (48)
75 1v8f_A Pantoate-beta-alanine l 39.4 68 0.0023 27.2 6.5 55 63-124 146-200 (276)
76 2ejc_A Pantoate--beta-alanine 38.2 79 0.0027 26.8 6.8 59 59-124 146-204 (280)
77 3ag6_A Pantothenate synthetase 37.2 1E+02 0.0034 26.2 7.3 59 59-124 147-205 (283)
78 2xv9_A ABA-1A1 repeat UNIT; li 33.5 1.1E+02 0.0039 23.0 6.3 47 151-200 16-62 (134)
No 1
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.1e-58 Score=423.45 Aligned_cols=212 Identities=42% Similarity=0.779 Sum_probs=195.9
Q ss_pred CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC
Q 027582 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH 80 (221)
Q Consensus 1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~ 80 (221)
+++|+|++|++++++++|+.++.++|+|+||+|||||+|+++||.|+.+++ |+||||+||+||+++||++|+|||++
T Consensus 194 ~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a---~lvpvG~DQ~~~i~l~Rdla~r~~~~ 270 (406)
T 3tze_A 194 ILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAM---CLVPAAVDQDPFFRLARDKAKALGEK 270 (406)
T ss_dssp HHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCE---EEEEEEGGGHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCC---eEEeeccchHHHHHHHHHHHHHcCCC
Confidence 358999999999999999888899999999999999999999999998877 78999999999999999999999999
Q ss_pred CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCCh
Q 027582 81 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDD 160 (221)
Q Consensus 81 ~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~ 160 (221)
+|.++++++||||+|+++|||||+++|+|+|+|+|++|++||++||+||++.+++.+++.++||+++|++.||++|++++
T Consensus 271 ~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~ 350 (406)
T 3tze_A 271 KPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDD 350 (406)
T ss_dssp CCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCH
T ss_pred CceeeccCcccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCc
Confidence 99999999999999976799999988899999999999999999999999988888888999999999999999998668
Q ss_pred HhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCC
Q 027582 161 AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRP 215 (221)
Q Consensus 161 ~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~ 215 (221)
+++++|+++|++|+++|++||+.||++|+++|+|||+||+++++|.|++++..|+
T Consensus 351 ~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~~d~~~~~~~~~~ 405 (406)
T 3tze_A 351 QELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINK 405 (406)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCGGG
T ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcCC
Confidence 8999999999999999999999999999999999999999999999999999875
No 2
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=2.7e-58 Score=418.61 Aligned_cols=211 Identities=27% Similarity=0.568 Sum_probs=200.3
Q ss_pred CccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccC-CCCcccccCCCCchHHHHHHHHHHHHhCC
Q 027582 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVAPRIGY 79 (221)
Q Consensus 1 ~~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~-ad~~~~vpvG~DQ~~h~~laR~ia~~~n~ 79 (221)
+++|+|++|++++++++|+.+++++|+|+||+|||||+|..+|||||.++ + |+||||+||+||+++||++|+|||+
T Consensus 174 ~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a---~~VpvG~DQ~~hl~l~Rdla~r~n~ 250 (386)
T 3hzr_A 174 ISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPAR---CLVLDSIKNVQFHSIIDQIATTLNF 250 (386)
T ss_dssp HHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCE---EEEEEEGGGHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCc---cccccccchHHHHHHHHHHHHHcCC
Confidence 36899999999999999988889999999999999999999999999886 5 8999999999999999999999999
Q ss_pred CCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCC
Q 027582 80 HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED 159 (221)
Q Consensus 80 ~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~ 159 (221)
++|.++++++||||+|+ +|||||+++|+|+|+|+|++|++||+++||||++.|.+++...+++|+++++++|+.+|+.+
T Consensus 251 ~~p~~l~~~~l~gLdG~-~KMSKSd~~~~I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~ 329 (386)
T 3hzr_A 251 IQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSD 329 (386)
T ss_dssp CCCEEEEECCCCCTTCT-TCCCCCCTTTSCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSC
T ss_pred CCceEeecCeeeCCCCC-CccCcCCCCCeeecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCC
Confidence 99998989999999997 49999998899999999999999999989999999998888999999999999999999866
Q ss_pred hHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCC
Q 027582 160 DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRP 215 (221)
Q Consensus 160 ~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~ 215 (221)
++++++|+++|++|+++|++||+.||++|+++|+|||+||+++++|.|++++..++
T Consensus 330 ~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~~~~~~~~ 385 (386)
T 3hzr_A 330 NAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTK 385 (386)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 78999999999999999999999999999999999999999999999999998873
No 3
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=2e-58 Score=420.55 Aligned_cols=218 Identities=50% Similarity=0.875 Sum_probs=191.8
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCC
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK 81 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~ 81 (221)
++|+|++|++++++++|+.+++++|+|+||+|||||+|..+||.++..++|+.|+||||.||++|+++|||+|+|||+++
T Consensus 169 ~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~~~~ 248 (393)
T 3hv0_A 169 LRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLK 248 (393)
T ss_dssp HHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTCCC
T ss_pred HHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHHHHcCCCC
Confidence 58999999999999999988899999999999999888888888888888888999999999999999999999999999
Q ss_pred ccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCChH
Q 027582 82 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDA 161 (221)
Q Consensus 82 p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~~ 161 (221)
|.++++++||||+|+++|||||++||+|+|+|+|++|++||+++|+||++.+.+++.+.++||+++++++|+++|+.+++
T Consensus 249 p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~ 328 (393)
T 3hv0_A 249 PSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDE 328 (393)
T ss_dssp CEEEEECCCCC-------------CCCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHH
T ss_pred ceeeccCcccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChh
Confidence 99999999999999877999999989999999999999999998999999888877788999999999999999987788
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCCCCCCC
Q 027582 162 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221 (221)
Q Consensus 162 ~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~~~~~~ 221 (221)
++++++++|++|+++|++||+.|+++|+++|+|+|+||+++++|.|++||..++. +|.
T Consensus 329 ~~eei~~~y~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~--~~~ 386 (393)
T 3hv0_A 329 KLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKSRE--QLL 386 (393)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCCC--CCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCcCHH--HHH
Confidence 9999999999999999999999999999999999999999999999999999976 663
No 4
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=1.3e-58 Score=422.11 Aligned_cols=214 Identities=52% Similarity=0.886 Sum_probs=163.7
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccC-CCCcccccCCCCchHHHHHHHHHHHHhCCC
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVAPRIGYH 80 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~-ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~ 80 (221)
++|+|++|++++++++||.+++++|+|+||+|||||+|.++||||++++ .+..|+||||.||+||+++||++|+|||++
T Consensus 172 ~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~ 251 (395)
T 3i05_A 172 AKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYL 251 (395)
T ss_dssp HHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHTHHHHTCC
T ss_pred HHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHHHHHcCCC
Confidence 5789999999999999998889999999999999999999999999998 223389999999999999999999999999
Q ss_pred CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCCh
Q 027582 81 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDD 160 (221)
Q Consensus 81 ~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~ 160 (221)
+|.++++++||||+|+++||||| ++|+|+|+|+|++|++||+++||||+..++++++++++||++||+++|+++|+.++
T Consensus 252 ~p~~l~~~~l~gLdG~~~KMSKS-~~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~ 330 (395)
T 3i05_A 252 KPAVIHSKFFPGLSGPKGKMSSS-SGTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDD 330 (395)
T ss_dssp CCEEEEECCCCCC--------------CCBTTCCHHHHHHHHC----------------------CCHHHHHHHHHCCCS
T ss_pred CceeeccccccCCCCCcccCCCC-CCCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCCh
Confidence 99999999999999987899999 77899999999999999999899999988888889999999999999999998678
Q ss_pred HhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCC
Q 027582 161 AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216 (221)
Q Consensus 161 ~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~ 216 (221)
+++++++++|++|+++|++||+.|++.|+++|+|||+||+++++|.|++++..+.+
T Consensus 331 ~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~ 386 (395)
T 3i05_A 331 EELARVKKEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIM 386 (395)
T ss_dssp HHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCC
T ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhChhcc
Confidence 89999999999999999999999999999999999999999999999999998865
No 5
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=4.4e-56 Score=409.90 Aligned_cols=215 Identities=45% Similarity=0.802 Sum_probs=200.2
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCC----------------------------------Cccc
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF----------------------------------PHLF 47 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~----------------------------------~Dil 47 (221)
.+|+|++|+++++++.|+.+++++|+|+||+|||||+|..+| .|||
T Consensus 188 ~~L~r~~Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (451)
T 3foc_A 188 CLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAV 267 (451)
T ss_dssp HHHHHTCCHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CC
T ss_pred HHHHhhCCHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhh
Confidence 478999999999999999888999999999999998887666 2677
Q ss_pred ccCCC--------------CcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 48 SGKDH--------------LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 48 ~~~ad--------------~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
+|++| ++|+||||+||+||+|+||++|+|||+++|.++++++||||+|+++|||||++||+|+|+|
T Consensus 268 l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D 347 (451)
T 3foc_A 268 LSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTD 347 (451)
T ss_dssp CCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTC
T ss_pred hhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecC
Confidence 77776 7789999999999999999999999999999999999999999878999999988999999
Q ss_pred CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhH
Q 027582 114 SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193 (221)
Q Consensus 114 ~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~ 193 (221)
+|++|++||+++|+||+..+.+++.++++||++|++|+||.+|+.+++++++|+++|++|+++|++||+.|++.|+++|+
T Consensus 348 ~p~~I~kKI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~ 427 (451)
T 3foc_A 348 TPAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIK 427 (451)
T ss_dssp CHHHHHHHHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhccCCCCccchhcccCCCCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999779999888888889999999999999999997678899999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCC
Q 027582 194 RHQVARAAVTDEMVDAFMAVRPL 216 (221)
Q Consensus 194 pire~~~~~~~~~l~~il~~~~~ 216 (221)
|||+||++++++.|++++..+++
T Consensus 428 pirer~~~l~~d~v~~f~~~~~~ 450 (451)
T 3foc_A 428 EHAERRDKVDTTMIESFTVKKEL 450 (451)
T ss_dssp HHHHHHHTCCHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHHHhhCcccC
Confidence 99999999999999999998854
No 6
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.7e-55 Score=398.76 Aligned_cols=203 Identities=37% Similarity=0.659 Sum_probs=173.5
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCccccc-CCCCcccccCCCCchHHHHHHHHHHHHhCCC
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG-KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH 80 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~-~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~ 80 (221)
..|++++|++++++.+|++++.++|+|+||+|||| |||.+ ++ |+||||.||+||+++||++|+|||++
T Consensus 166 ~~l~~~~t~~~~~~~~~~~~~~~~g~f~YP~LQaa--------Dil~~~~a---~~vpvG~DQ~~hl~l~Rdla~r~n~~ 234 (392)
T 3jxe_A 166 IPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIA--------PTFFERKR---CLIPAAIDQDPYWRLQRDFAESLGYY 234 (392)
T ss_dssp HHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHG--------GGGSSSSC---EEEEEEGGGHHHHHHHHHHTGGGTSC
T ss_pred HHHHhhCCHHHHhhhhccCCCCchHHHHHHHHHHh--------hHHhhcCC---ceeecccchHHHHHHHHHHHHHcCCC
Confidence 46889999999999999988899999999999999 99999 46 78999999999999999999999999
Q ss_pred CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhc-CC
Q 027582 81 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-ED 159 (221)
Q Consensus 81 ~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~-~~ 159 (221)
+|.++++++||||+|+++|||||++||+|+|+|+|++|++||++||+||+..+.+.+.+.++||++|++++|+.+|+ .+
T Consensus 235 ~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~ 314 (392)
T 3jxe_A 235 KTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEED 314 (392)
T ss_dssp CCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHHHTCC--------------------CHHHHHHHHTTCCC
T ss_pred CCeeeecccccCCCCCccccccCCCCCeeeCCCCHHHHHHHHHhhccCCCCcccccccccCCCCchhHHHHHHHHHHcCC
Confidence 99999999999999987799999998999999999999999999999999888777778899999999999999997 46
Q ss_pred hHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCC
Q 027582 160 DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216 (221)
Q Consensus 160 ~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~ 216 (221)
++++++++++|++|+++|++||+.||++|+++|+|||+||++++ ++|++||..+.+
T Consensus 315 ~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~-~~v~~~l~~g~~ 370 (392)
T 3jxe_A 315 DKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE-KLVEKFKYTGKL 370 (392)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSHHHHHTTSHH
T ss_pred cchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcc
Confidence 88999999999999999999999999999999999999999999 799999998854
No 7
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=1.6e-52 Score=385.83 Aligned_cols=210 Identities=62% Similarity=1.041 Sum_probs=194.1
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCccccc--------CCCCcccccCCCCchHHHHHHHHH
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG--------KDHLRCLIPCAIDQDPYFRMTRDV 73 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~--------~ad~~~~vpvG~DQ~~h~~laR~i 73 (221)
++|+||+|++++++++++.++.++|+|+||+|||| |||.+ +...+|+||||.||++|++++|++
T Consensus 205 ~~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAa--------Dil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i~l~Rdl 276 (437)
T 1r6u_A 205 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAA--------PSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDV 276 (437)
T ss_dssp HHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHG--------GGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHH--------HHHHhhcchhcccccCCceEEEeehhhHHHHHHHHHH
Confidence 46899999999999998878899999999999999 78773 223448999999999999999999
Q ss_pred HHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582 74 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 153 (221)
Q Consensus 74 a~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l 153 (221)
|+|||+++|.++++++||||+|+++|||||++||+|+|+|+|++|++||++|||||+..+.+++...++||+++++++||
T Consensus 277 a~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l 356 (437)
T 1r6u_A 277 APRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYL 356 (437)
T ss_dssp GGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHH
T ss_pred HHHhCCCCceEeecccccCCCCCccccCCCCCCCeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHH
Confidence 99999999999999999999997679999999889999999999999999999999988877778889999999999999
Q ss_pred hhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCCCCCCC
Q 027582 154 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 221 (221)
Q Consensus 154 ~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~~~~~~ 221 (221)
++|+.+++++++|+++|.+|+++++++|+.||+.|+++++|+|+||++++++.|++++..+++ .|+
T Consensus 357 ~~ft~~~~eieel~~~~~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~~~~~~~~~~~~--~~~ 422 (437)
T 1r6u_A 357 TFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL--SFD 422 (437)
T ss_dssp HHHCCCHHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCCC--SCC
T ss_pred HHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--Ccc
Confidence 999877889999999999998999999999999999999999999999999889999999955 674
No 8
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=4.4e-53 Score=379.24 Aligned_cols=196 Identities=18% Similarity=0.288 Sum_probs=176.1
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-- 79 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~-- 79 (221)
++|+|+++++++.++++ ++.++|+|+||+|||| |||.|++ |+||||.||+||+||||++|+|||+
T Consensus 105 ~~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQaa--------Dil~~~a---d~vpvG~DQ~~hlel~Rdia~rfn~~y 171 (341)
T 3sz3_A 105 GELSRMTQFKDKSARYA--NDVNAGLFGYPVLMAA--------DILLYGA---HQVPVGSDQKQHLELARDIATRFNNIY 171 (341)
T ss_dssp HHHHTCHHHHHHHHHHG--GGCCHHHHHHHHHHHH--------HHHTTTC---SEECCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcc--CCCChhhHHhHHHHHH--------HHHHcCC---CEEEeccchHHHHHHHHHHHHHhchhc
Confidence 57899999999988763 5789999999999999 9999999 5799999999999999999999982
Q ss_pred -------CCcccc-c--cCcccCCCCCCCCcCCCCC--CCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccch
Q 027582 80 -------HKPALI-E--SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD 147 (221)
Q Consensus 80 -------~~p~~l-~--~~~lp~L~g~~~KMSkS~~--~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~ 147 (221)
+.|..+ . +++||||+++++|||||++ +|+|+|+|+|++|++||++ |+||+..+.+++++++++|+++
T Consensus 172 g~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~-a~Td~~~~~~~~~~~~~~p~v~ 250 (341)
T 3sz3_A 172 SPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINK-AQTDAETPPRIAYDVENKAGIA 250 (341)
T ss_dssp CSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHH
T ss_pred cCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhh-ccCCCCCCcccccCCCCCcchh
Confidence 244433 2 5899999765679999998 6899999999999999999 9999987666778889999999
Q ss_pred hHHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582 148 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 214 (221)
Q Consensus 148 ~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~ 214 (221)
|++.||++| +++++++++++|+ |+++|++||+.|+++|+++|+|||+||++++++ +|++||+.+
T Consensus 251 ~l~~~~~~~--~~~~~e~i~~~~~-g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~G 316 (341)
T 3sz3_A 251 NLMGLYSAA--TGKTFAEIEAQYA-GVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDG 316 (341)
T ss_dssp HHHHHHHHH--HCCCHHHHHHHTT-TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCccHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999 4578999999998 668999999999999999999999999999876 899999875
No 9
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=4.6e-52 Score=386.84 Aligned_cols=209 Identities=61% Similarity=1.025 Sum_probs=192.9
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCccccc--------CCCCcccccCCCCchHHHHHHHHH
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG--------KDHLRCLIPCAIDQDPYFRMTRDV 73 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~--------~ad~~~~vpvG~DQ~~h~~laR~i 73 (221)
.+|+|++|++++++++++.++.++|+|+||+|||| |||.+ +...+|+||||.||++|++++|++
T Consensus 252 ~~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAa--------Dil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdl 323 (477)
T 1r6t_A 252 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAA--------PSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDV 323 (477)
T ss_dssp HHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHG--------GGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHH--------HHHHhccchhhccccCCceeEeccccHHHHHHHHHHH
Confidence 47899999999999998878899999999999999 77762 333448999999999999999999
Q ss_pred HHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582 74 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 153 (221)
Q Consensus 74 a~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l 153 (221)
|+|||+++|.++++++||||+|+++|||||++||+|+|+|+|++|++||++||||++..+.+++...++||++++++.||
T Consensus 324 a~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l 403 (477)
T 1r6t_A 324 APRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYL 403 (477)
T ss_dssp GGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHH
T ss_pred HHHhCCCCceeeecccccCCCCCccccCCCCCCCceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHH
Confidence 99999999999999999999997679999999889999999999999999999999988877778889999999999999
Q ss_pred hhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCCCCCC
Q 027582 154 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 220 (221)
Q Consensus 154 ~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~~~~~ 220 (221)
++|+.+++++++|+++|.+|+++++++|+.||+.|+++|+|||+||++++++.|++++..+++ +|
T Consensus 404 ~~ft~~~~eieel~~~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~~v~~~~~~~~~--~~ 468 (477)
T 1r6t_A 404 TFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL--AA 468 (477)
T ss_dssp HHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCC--C-
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--hh
Confidence 999877889999999999998999999999999999999999999999999889999999955 66
No 10
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=3.1e-51 Score=377.27 Aligned_cols=211 Identities=51% Similarity=0.861 Sum_probs=183.4
Q ss_pred cccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccc---cCCCCcccccCCCCchHHHHHHHHHHHHhCC
Q 027582 3 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS---GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY 79 (221)
Q Consensus 3 ~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~---~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~ 79 (221)
+|+||+|++++++++|+.++.++|+|+||+|||||+|.-++|.++. |++ |+||||.||++|++++|++|+|||+
T Consensus 199 ~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~---~lvp~G~DQ~~~i~l~Rdla~r~~~ 275 (432)
T 2ip1_A 199 RVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTP---CLIPCAIDQDPYFRVCRDVADKLKY 275 (432)
T ss_dssp HHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCC---EEEEEEGGGHHHHHHHHHHHHHHTS
T ss_pred HHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCc---eEEEeccCcHHHHHHHHHHHHHhCC
Confidence 5899999999999998878899999999999999333333332222 344 7999999999999999999999999
Q ss_pred CCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhcCC
Q 027582 80 HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED 159 (221)
Q Consensus 80 ~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~~~ 159 (221)
++|.++++++||||+|+++|||||++||+|+|+|+|++|++||++||||++..+.+++...++||+++++++||++|..+
T Consensus 276 ~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~ 355 (432)
T 2ip1_A 276 SKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDD 355 (432)
T ss_dssp CCCEEEEECCCCCTTC--------CGGGCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCC
T ss_pred CCceeeccccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCC
Confidence 99999999999999998789999999889999999999999999999999988777778889999999999999999767
Q ss_pred hHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhcCCC
Q 027582 160 DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216 (221)
Q Consensus 160 ~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~~~~ 216 (221)
++++++|+++|.+|+++++++|+.||+.|+++++|+|+||++++++.+++++..+++
T Consensus 356 ~~eieel~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~ 412 (432)
T 2ip1_A 356 DVFLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412 (432)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCC
T ss_pred HhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHH
Confidence 899999999999998999999999999999999999999999999889999888865
No 11
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=4e-52 Score=373.39 Aligned_cols=195 Identities=17% Similarity=0.287 Sum_probs=173.9
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-- 79 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~-- 79 (221)
++|+|+++++++..+. .++.++|+|+||+|||| |||.|++ |+||||+||+||+|||||+|+|||+
T Consensus 114 ~~l~R~~~~k~~~~~~--~~~~~~g~~~YP~lQAa--------Dil~~~a---d~vpvG~DQ~~hleltRdia~rfn~~y 180 (346)
T 3n9i_A 114 GELSRMTQFKDKSARY--AENINAGLFDYPVLMAA--------DILLYQT---NQVPVGEDQKQHLELSRDIASRFNNLY 180 (346)
T ss_dssp HHHHTCHHHHHHHHHS--GGGCBHHHHHHHHHHHH--------HHHTTTC---SEECCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--CCCCCchhHHhHHHHHH--------HHHHhCc---eEEEeccchHHHHHHHHHHHHHhcccc
Confidence 5789999999988765 35689999999999999 9999999 5799999999999999999999993
Q ss_pred ----CCccccc---cCcccCCCCCCCCcCCCCCC--CceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582 80 ----HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV 150 (221)
Q Consensus 80 ----~~p~~l~---~~~lp~L~g~~~KMSkS~~~--s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~ 150 (221)
+.|..+. +++||||+++++|||||++| |+|+|+|+|++|++||++ ||||+..+.+++++++++|+++|++
T Consensus 181 g~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~k-A~Td~~~~~~~~~~~~~~p~v~~l~ 259 (346)
T 3n9i_A 181 GDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKR-AMTDSDEPALIRYDVEKKAGVSNLL 259 (346)
T ss_dssp SSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHHHH
T ss_pred CCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHh-CcCCCCCCccccCCCCCCCChhHHH
Confidence 4555443 37999997666899999986 899999999999999999 9999987555667889999999999
Q ss_pred HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582 151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 214 (221)
Q Consensus 151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~ 214 (221)
.|++.| +++++++++++|.+| ++++||+.|+++|+++|+|||+||+++++| +|++||+.+
T Consensus 260 ~~~~~~--~~~~~eel~~~y~~~--~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~~G 321 (346)
T 3n9i_A 260 DILSGV--TGQSIPELEAQFTGQ--MYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREG 321 (346)
T ss_dssp HHHHHH--HCCCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhc--CCccHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 999999 457899999999855 699999999999999999999999999976 999999875
No 12
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=2.9e-51 Score=372.33 Aligned_cols=192 Identities=21% Similarity=0.272 Sum_probs=162.3
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-- 79 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~-- 79 (221)
++|+|+++||++.+.. +++++|+|+||+|||| |||.|++ |+||||+||+||+|+|||||+|||+
T Consensus 134 ~~L~R~~~fk~k~~~~---~~~~~g~~~YPvLQAA--------DIl~~~a---d~vPvG~DQ~~hleltRdia~rfn~~y 199 (388)
T 3prh_A 134 GELERMTQFKDKSKGN---EAVVSGLLTYPPLMAA--------DILLYGT---DLVPPGEDQKQHLELTRNLAERFNKKY 199 (388)
T ss_dssp HHHHTTC-------------CCBHHHHSCHHHHHH--------HHHTTTC---CEECCCSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhhHhHHhhcc---CCCcchhHhhHHHHHH--------HHHHhCC---CEEEechhHHHHHHHHHHHHHHhCccc
Confidence 5788999998876643 5789999999999999 9999999 5799999999999999999999994
Q ss_pred ----CCccccc---cCcccCCCCCCCCcCCCCC--CCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582 80 ----HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV 150 (221)
Q Consensus 80 ----~~p~~l~---~~~lp~L~g~~~KMSkS~~--~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~ 150 (221)
+.|..+. +++||||+|+++|||||++ +|+|+|+|+|++|++||++ |+||+...++ ++++++|+++|++
T Consensus 200 ~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~k-a~TD~~~~~~--~~~~~~p~v~~l~ 276 (388)
T 3prh_A 200 NDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVK--FDKENKPGVSNLL 276 (388)
T ss_dssp CSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHT-CCCCSSCCCC--CCTTTCHHHHHHH
T ss_pred CCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhh-ccCCCCCccc--CCCCCCCCcchHH
Confidence 2233222 4789999887789999997 7899999999999999999 9999875433 5678999999999
Q ss_pred HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH-HHHHHHhcC
Q 027582 151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR 214 (221)
Q Consensus 151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~-~l~~il~~~ 214 (221)
.|+++| +++++++++++|+ |. +|++||+.|+++|+++|+|||+||+++++| +|++||+.+
T Consensus 277 ~i~~~~--~~~~~eel~~~y~-g~-~~g~lK~~lae~l~~~l~pirer~~~~~~~~~l~~il~~G 337 (388)
T 3prh_A 277 TIYSIL--GNTTIEELEAKYE-GK-GYGEFKGDLAEVVVNALKPIQDRYYELIESEELDRILDEG 337 (388)
T ss_dssp HHHHHH--HTCCHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHhc--CCCcHHHHHHHHc-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 999999 4568999999999 75 999999999999999999999999999876 899999875
No 13
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=4.9e-50 Score=357.31 Aligned_cols=189 Identities=19% Similarity=0.252 Sum_probs=169.1
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-- 79 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~-- 79 (221)
.+|+|++|||+..+. .++.++|+|+||+|||| |||.|++ |+||||.||+||+++|||+|+|||+
T Consensus 102 ~~l~r~~~~K~~~~~---~~~~~~g~f~YP~LQAa--------Dil~~~~---~~vpvG~DQ~~hi~l~Rdia~r~n~~~ 167 (322)
T 3tzl_A 102 GLLERAHSYKDKVAK---GLSASHGLFSYPVLMAA--------DILLFDT---RIVPVGKDQIQHVEIARDIALKVNNEW 167 (322)
T ss_dssp HHHHSCHHHHHHHHT---TCCCBHHHHHHHHHHHH--------HHHHTTC---SEEECCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHcc---CCCCchHHHHHHHHHHH--------HHHHhCC---cEEEeccchHHHHHHHHHHHHHhcccc
Confidence 467788888876554 35799999999999999 9999999 5899999999999999999999986
Q ss_pred ----CCcccc---ccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHH
Q 027582 80 ----HKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 152 (221)
Q Consensus 80 ----~~p~~l---~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~ 152 (221)
++|..+ .+++||||+| +|||||++| +|+|+|+|++|++||++ |+||+... + ..+||+++++++|
T Consensus 168 g~~f~~P~~~~~~~~~~l~~l~G--~KMSKS~~n-~I~L~d~p~~i~~KI~~-a~td~~~~----~-~~~~~~~~~v~~~ 238 (322)
T 3tzl_A 168 GEIFTLPEARVNEEVAVVVGTDG--AKMSKSYQN-TIDIFSSEKTLKKQISS-IVTDSTAL----E-DPKDHENCNIFKI 238 (322)
T ss_dssp CSCSCCCEEECCCSSCCCBCTTS--SBCCGGGTC-CCBSSCCHHHHHHHHHT-CCCCCCCT----T-SCCCGGGCHHHHH
T ss_pred cCCCCCchhhhccccccccCCCC--CcCCCCCCC-ceecCCCHHHHHHHHHh-ccCCCccc----c-CCCCCcchhHHHH
Confidence 555443 3799999999 799999986 89999999999999999 99999864 2 2578999999999
Q ss_pred HhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582 153 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 214 (221)
Q Consensus 153 l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~ 214 (221)
+++|+ +.+++++++++|++|+++++++|+.||+.|+++|+|||+||+++++| +|++||+.+
T Consensus 239 ~~~~~-~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~G 301 (322)
T 3tzl_A 239 AKLFL-DESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDFG 301 (322)
T ss_dssp HGGGC-CHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHhC-ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99996 57899999999999889999999999999999999999999999986 999999875
No 14
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=5.2e-50 Score=358.00 Aligned_cols=192 Identities=22% Similarity=0.314 Sum_probs=172.0
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC---
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--- 78 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n--- 78 (221)
.+|+|+++|+++.++ + ++.++|+|+||+|||| |||.|++ ++||||.||+||++++|++|+|||
T Consensus 100 ~~l~r~~~~k~~~~~-~--~~~~~g~f~YPvLQaa--------Dil~~~~---~~vpvG~DQ~~~iel~Rdia~r~n~~y 165 (328)
T 1i6k_A 100 GELERMTQFKEKSAG-K--EAVSAGLLTYPPLMAA--------DILLYNT---DIVPVGEDQKQHIELTRDLAERFNKRY 165 (328)
T ss_dssp HHHHTCHHHHHHHTT-C--SSCCHHHHTHHHHHHH--------HHHTTTC---SEEECCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-c--CCCCchhhccHHHHHH--------HHHHhCC---CEEecccchHHHHHHHHHHHHHhCccc
Confidence 578999999988765 2 6789999999999999 9999999 579999999999999999999999
Q ss_pred ---CCCccccc---cCcccCCCCCCCCcCCCCCCCc--eecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582 79 ---YHKPALIE---SSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV 150 (221)
Q Consensus 79 ---~~~p~~l~---~~~lp~L~g~~~KMSkS~~~s~--I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~ 150 (221)
+++|..+. +++||||+|+++|||||++|++ |+|+|+|++|++||++ |+||+..++. ++++++|++++++
T Consensus 166 g~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~-a~td~~~~~~--~~~~~~p~v~~~~ 242 (328)
T 1i6k_A 166 GELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIR--YDKEAKPGISNLL 242 (328)
T ss_dssp CSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CCCCSSCCCC--CBTTTBHHHHHHH
T ss_pred ccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHh-cCCCCccccc--cCCCCCcchhhHH
Confidence 45676553 6999999998889999999866 9999999999999999 9999975432 5667789999999
Q ss_pred HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH-HHHHHHhcC
Q 027582 151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR 214 (221)
Q Consensus 151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~-~l~~il~~~ 214 (221)
.|+.+| +++++++|+++|. | ++++++|+.||+.|+++|+|||+||++++++ .|++||..+
T Consensus 243 ~~~~~~--~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~il~~g 303 (328)
T 1i6k_A 243 NIYSTL--SGQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEG 303 (328)
T ss_dssp HHHHHH--HCCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHH
T ss_pred HHHHHC--CchhHHHHHHHHc-C-CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChhHHHHHHHH
Confidence 999999 5678999999999 8 8999999999999999999999999999876 699998865
No 15
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=2.2e-50 Score=362.89 Aligned_cols=194 Identities=18% Similarity=0.217 Sum_probs=169.4
Q ss_pred ccccccccHHHHHHhhCC----CCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHh
Q 027582 2 VKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 77 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~----~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~ 77 (221)
.+|+|+++||+..++.+| .++.++|+|+||+|||| |||.|++ ++||||.||+||+|++|++|+||
T Consensus 103 ~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaa--------Dil~~~a---~~vpvG~DQ~~~lel~Rdia~r~ 171 (348)
T 2yy5_A 103 GELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAG--------DILLYQP---DIVPVGNDQKQHLELTRDLAQRI 171 (348)
T ss_dssp HHHHHCHHHHTTC-----------CCBTHHHHHHHHHHH--------HHHTTCC---SEEECCGGGHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHH--------HHHHhCc---cEEEecccHHHHHHHHHHHHHHh
Confidence 578899999887665432 45789999999999999 9999999 57999999999999999999999
Q ss_pred C------CCCccccc---cCcccCCCCCCCCcCCCCCCC--ceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccc
Q 027582 78 G------YHKPALIE---SSFFPALQGETGKMSASDPNS--AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV 146 (221)
Q Consensus 78 n------~~~p~~l~---~~~lp~L~g~~~KMSkS~~~s--~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v 146 (221)
| +++|..++ +++||||+|+++|||||++|+ +|+|+|+|++|++||++ |+||+..+.. ++++++|++
T Consensus 172 n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~-a~td~~~~~~--~~~~~~p~v 248 (348)
T 2yy5_A 172 QKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIR--FASKTQPGV 248 (348)
T ss_dssp HHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHT-CCCCSSCCCS--CCTTTCHHH
T ss_pred hhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHh-CCCCCccccc--cCCCCCCch
Confidence 8 56787766 599999999888999999975 89999999999999999 9999975433 567789999
Q ss_pred hhHHHHHhhhcCChHhHH---------HHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH-HHHHHHhcC
Q 027582 147 DIPVKYLSFFLEDDAELE---------HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR 214 (221)
Q Consensus 147 ~~~~~~l~~~~~~~~~~e---------el~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~-~l~~il~~~ 214 (221)
++++.|+.+| ++++++ +|+++|. | ++++++|+.||++|+++|+|||+||+++ +| .|+++|..+
T Consensus 249 ~~~~~~~~~~--~~~~~~~~~~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~-~d~~~~~~l~~G 321 (348)
T 2yy5_A 249 TNMLTILKAL--LKEPVNQSLTNQLGNDLEAYFS-T-KSYLDLKNALTEATVNLLVNIQRKREQI-SREQVFNCLQAG 321 (348)
T ss_dssp HHHHHHHHHH--TTSGGGHHHHHHHCSCHHHHGG-G-CCHHHHHHHHHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHH
T ss_pred hhHHHHHHhC--ChHhhhhhcccchHHHHHHHHc-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHH
Confidence 9999999999 567899 9999999 7 8999999999999999999999999999 55 599999875
No 16
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=3.1e-49 Score=354.49 Aligned_cols=195 Identities=20% Similarity=0.232 Sum_probs=167.9
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCC--
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-- 79 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~-- 79 (221)
.+|.|++|||+.+.+++..++.++|+|+||+|||| |||.|++ ++||||.||+||++++|++|+|||+
T Consensus 113 ~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAa--------Dil~~~~---~~vpvG~DQ~~hi~l~rdia~r~n~~y 181 (340)
T 2g36_A 113 SRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAA--------DILIYKA---EGVPVGEDQVYHIELTREIARRFNYLY 181 (340)
T ss_dssp HHHHTCHHHHTC-------CCCSHHHHTHHHHHHH--------HHHTTTC---SEEEECGGGHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHh--------hHHHhCC---CEEEcccchHHHHHHHHHHHHHhhhhc
Confidence 46777888877322333345689999999999999 9999999 5899999999999999999999973
Q ss_pred ----CCccc--cccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582 80 ----HKPAL--IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 153 (221)
Q Consensus 80 ----~~p~~--l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l 153 (221)
++|.. .++++||||+| .|||||++| +|+|+|+|++|++||++ |+||+.. .++..+++|++++++.|+
T Consensus 182 g~~f~~P~~~~~~~~~l~gldG--~KMSKS~~n-~I~L~dsp~~i~~Ki~~-a~td~~~---~~~~~~~~p~~~~v~~~~ 254 (340)
T 2g36_A 182 DEVFPEPEAILSRVPKLPGTDG--RKMSKSYGN-IINLEISEKELEQTILR-MMTDPAR---VRRSDPGNPENCPVWKYH 254 (340)
T ss_dssp CCCCCCCEEEECCSCCCCCTTS--SCCCGGGTC-CCBTTCCHHHHHHHHHT-CCCCTTC---SSTTSCCCGGGCHHHHHH
T ss_pred ccccCCchhhhccccccCCCCc--cccCCCCCC-eEeeeCCHHHHHHHHHh-CCCCccc---ccccCCCCCchhHHHHHH
Confidence 56764 34799999998 499999986 89999999999999999 9999865 234456999999999999
Q ss_pred hhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582 154 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 214 (221)
Q Consensus 154 ~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~ 214 (221)
++|+++.+++++|+++|.+|+++++++|+.||+.|+++|+|||+||++++++ +|++||..+
T Consensus 255 ~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~~il~~g 317 (340)
T 2g36_A 255 QAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPHYVDDVIMEG 317 (340)
T ss_dssp HHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred HHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 9997557778999999999889999999999999999999999999999987 899999865
No 17
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=7e-49 Score=353.52 Aligned_cols=196 Identities=25% Similarity=0.331 Sum_probs=176.8
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC---
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--- 78 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n--- 78 (221)
.+|+|++|+|++.+..||.++.++|+|+||+|||| |||.|++ ++||||.||+||++++|++|+|||
T Consensus 122 ~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAa--------Dil~~~~---~~vpvG~DQ~~hi~l~rdia~r~n~~y 190 (351)
T 1yi8_B 122 SHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAA--------DIAAFGA---TLVPVGDDQLPMLEQTREIVRRFNALY 190 (351)
T ss_dssp HHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHH--------HHHHHTC---SEEEECGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHh--------hHHhcCC---CEEEecCCcHHHHHHHHHHHHHHHhhc
Confidence 57889999999998877777899999999999999 9999999 579999999999999999999997
Q ss_pred ---CCCcccc--ccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582 79 ---YHKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 153 (221)
Q Consensus 79 ---~~~p~~l--~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l 153 (221)
+++|..+ ++++||||+| ++|||||++| +|+|+|+|++|++||++ |+||+.. .+...++|++.++++.|+
T Consensus 191 g~~f~~P~~~~~~~~~l~~ldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~~---~~~~~~~~~~~~~~~~~l 264 (351)
T 1yi8_B 191 APVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGDSADEVARKVMG-MYTDPGH---LRASDPGRVEGNPVFTFL 264 (351)
T ss_dssp CSCSCCCEEEECSSCSCCCTTS-SSCCCTTTTC-CCBTTCCHHHHHHHHHT-CCCCTTC---CSTTSCCCCTTCTTHHHH
T ss_pred ccccCCCeeeeecCccccCCCC-ccccCCCCCC-eecCCCCHHHHHHHHHh-cCCCccc---ccccCCCCCccchHHHHH
Confidence 3677654 3699999998 3699999997 99999999999999999 9999863 335567889999999999
Q ss_pred hhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582 154 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 214 (221)
Q Consensus 154 ~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~ 214 (221)
.+|+.+.+++++|+++|.+|+++|+++|+.||+.|+++|+|+|+||+++++| +|+++|..+
T Consensus 265 ~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~l~~il~~G 327 (351)
T 1yi8_B 265 DAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEG 327 (351)
T ss_dssp HHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9997667788999999999889999999999999999999999999999986 899999865
No 18
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=2.3e-48 Score=352.42 Aligned_cols=196 Identities=30% Similarity=0.425 Sum_probs=173.8
Q ss_pred cccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCC-----cccccCCCCchHHHHHHHHHHHHh
Q 027582 3 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHL-----RCLIPCAIDQDPYFRMTRDVAPRI 77 (221)
Q Consensus 3 ~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~-----~~~vpvG~DQ~~h~~laR~ia~~~ 77 (221)
.+++.+|+.++.+.+| ..+.|+++||+|||| |||++++|. +|+||||+||+||+||||+||+||
T Consensus 164 ~~~~~~~~~~~~~~~~---~~~~~~~~yP~lqAa--------Dil~~~~d~~~gy~a~~VPVG~DQ~~hleltRdiA~rf 232 (372)
T 3a04_A 164 LFSGKVTAAEMEAIYG---ELTPAKMMASLTQAA--------DILHVQLDEYGGYRHVVVPVGADQDPHLRLTRDLADRM 232 (372)
T ss_dssp HHTTSSCHHHHHHHHS---SCCHHHHHHHHHHHH--------HHHGGGSGGGTCCCCEEEEEEGGGHHHHHHHHHHHHHT
T ss_pred HHHhhhhHHHHhhhhh---ccCcccccCCcchhH--------HHhhhcCccccCccceecccchhhHHHHHHHHHHHHHh
Confidence 4678889999998875 368899999999999 777643331 279999999999999999999999
Q ss_pred C----CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHH
Q 027582 78 G----YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 153 (221)
Q Consensus 78 n----~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l 153 (221)
| .++|..++++++|||+| .|||||++||+|+|+|+|++|++||++ |+||+..+.+.+...+|+|++++++.++
T Consensus 233 n~~~~~~~P~~~~~~~~pgldG--~KmS~S~~ns~I~l~D~p~~i~kKI~k-a~td~~~~~~~~~~~~G~p~~~~i~~~~ 309 (372)
T 3a04_A 233 AGVVELERPASTYHKLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEVCSVYHMD 309 (372)
T ss_dssp TTTSCCCCCEEEEECCCBCTTS--SBCCTTSGGGSCBTTCCHHHHHHHHHT-CCCSCCSSHHHHHHHCCCGGGCHHHHHH
T ss_pred cCcccccChhhhhhcccCCCCC--CccCCCCCCcccccCCCHHHHHHHHhc-CccCCCCCcccccccCCCCchhhHHHHH
Confidence 9 58899999999999999 699999999999999999999999999 9999999989889999999999999874
Q ss_pred -hhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhc
Q 027582 154 -SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 213 (221)
Q Consensus 154 -~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~~ 213 (221)
.++..+++++++++++|++|+++|++||+.|++.|+++|+|+|+||++..+ +++++|+.
T Consensus 310 l~~~~~d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer~e~~~~-~~~kile~ 369 (372)
T 3a04_A 310 LYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQSRLEKAKT-IAWKLVEP 369 (372)
T ss_dssp HHTTCCSHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTSCCC
T ss_pred HHccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhcc
Confidence 334457889999999999999999999999999999999999999998655 77777654
No 19
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=2.9e-48 Score=347.87 Aligned_cols=192 Identities=23% Similarity=0.268 Sum_probs=162.0
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC---
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--- 78 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n--- 78 (221)
.+|+|++|||+..+ ..+++++|+|+||+|||| |||.|++ ++||||.||+||++++|++|+|||
T Consensus 104 ~~l~r~~~~k~r~~---~~~~~~~g~f~YPvLQaa--------Dil~~~~---~lvp~G~DQ~~~i~l~rdla~r~n~~~ 169 (337)
T 2el7_A 104 GDLTRMTQFKDKAS---KQETVWSGLLMYPVLQAA--------DILIYKA---DTVPVGEDQVQHIELTREIARRFNHLF 169 (337)
T ss_dssp HHHHTSHHHHHHTT---SSSCCBHHHHHHHHHHHH--------HHHHTTC---CEEECCGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc---cCCCCChHHHHhHHHHHh--------hHHhhCC---cEEEcccchHHHHHHHHHHHHHHHhhc
Confidence 46778888877553 246789999999999999 9999999 589999999999999999999986
Q ss_pred ---CCCcccccc---CcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHH
Q 027582 79 ---YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 152 (221)
Q Consensus 79 ---~~~p~~l~~---~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~ 152 (221)
+++|..+++ ++||||+| ++|||||++| +|+|+|+|++|++||++ |+||+..+.+ + .+++|++++++.|
T Consensus 170 g~~f~~P~~~~~~~~p~l~gldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~~~~~--~-~~~~p~~~~v~~~ 243 (337)
T 2el7_A 170 GETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLLEPEESIWQKIQH-LPDDPQRIRL--S-DPGDPERTILFTY 243 (337)
T ss_dssp SSCCCCCEEECCTTSCCCBCTTS-SSBCCTTTTC-CCBSSSCHHHHHHHHHT-CCCCC----------------CHHHHH
T ss_pred CcccCCCeeecccccccccCCCC-ccccCCCCCC-eeeCcCCHHHHHHHHHh-CCCCCccccc--c-CCCCCchhhHHHH
Confidence 477877664 89999999 6899999997 99999999999999999 9999976543 3 4667999999999
Q ss_pred HhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582 153 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 214 (221)
Q Consensus 153 l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~ 214 (221)
+++|+ ..+++++|+++|.+|+++++++|+.||+.|+++|+|+|++|+++++| +|+++|..+
T Consensus 244 ~~~~t-~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~il~~G 306 (337)
T 2el7_A 244 LSYFA-PKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDALLEG 306 (337)
T ss_dssp HHHHS-CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHcC-ChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99995 33599999999999889999999999999999999999999999987 899999765
No 20
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=1.2e-45 Score=334.63 Aligned_cols=191 Identities=19% Similarity=0.278 Sum_probs=162.3
Q ss_pred cccccccHHHHHHh---hCCC--CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHh
Q 027582 3 KVAKCVTYNKVVGI---FGFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 77 (221)
Q Consensus 3 ~l~r~~t~k~~~~~---~g~~--~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~ 77 (221)
++++++|++++.+. .++. +++++|+|+||+|||| ||+.|++| +||||.||++|+++||++|+||
T Consensus 156 ~i~~~~tv~rm~~~~~~~~r~~~~~~~~g~f~YPlLQaa--------Dil~l~ad---~vpgG~DQ~~~l~l~Rdla~r~ 224 (373)
T 3vgj_A 156 DISRSFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCA--------DIFFLNVD---ICQLGIDQRKVNMLAREYCDIK 224 (373)
T ss_dssp HHHTTSBHHHHHTTGGGGTCCTTSCCBTHHHHHHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHH
T ss_pred HHHccCcHHHHHhhhHHHhhhccCCCChHHHHHHHHHHh--------cccccCCc---EEEcchhhHHHHHHHHHHHHHh
Confidence 46788899999874 3443 4689999999999999 99999996 6999999999999999999999
Q ss_pred CCC-CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchh----HHHH
Q 027582 78 GYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI----PVKY 152 (221)
Q Consensus 78 n~~-~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~----~~~~ 152 (221)
|+. +|.++++++||||+++++|||||+++|+|+|+|+|++|++||++ ||||++. .++||.+++ +|.+
T Consensus 225 ~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D~p~~i~~KI~k-A~td~~~-------~~~n~~~~~~~~~~f~~ 296 (373)
T 3vgj_A 225 KIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDVNRKIKK-AYCPPNV-------IENNPIYAYAKSIIFPS 296 (373)
T ss_dssp TCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTCCHHHHHHHHHH-SCCCTTC-------CTTCHHHHHHHHTHHHH
T ss_pred CCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeecCCCHHHHHHHHHh-CcCCCCC-------CCCCcchhhhhhhhhhh
Confidence 985 78888999999994435799999988899999999999999999 9999864 367887753 5666
Q ss_pred Hhhhc-C---------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHh
Q 027582 153 LSFFL-E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMA 212 (221)
Q Consensus 153 l~~~~-~---------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~ 212 (221)
+..|. + +++++++++++|++|+++|++||++||++|+++|+|||++|++..+. +|+++-.
T Consensus 297 ~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~lae~i~~~l~Pire~~~~~~~~~~~l~~v~~ 368 (373)
T 3vgj_A 297 YNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEIKK 368 (373)
T ss_dssp HSSEEECCCGGGTCCEEECCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hhhhcccccccccCCcCcccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHh
Confidence 66553 1 13589999999999999999999999999999999999999987654 5666543
No 21
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=3.9e-44 Score=345.77 Aligned_cols=200 Identities=21% Similarity=0.315 Sum_probs=169.0
Q ss_pred cccccccHHHHHHh---hCCCC-CCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582 3 KVAKCVTYNKVVGI---FGFTG-EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 78 (221)
Q Consensus 3 ~l~r~~t~k~~~~~---~g~~~-~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n 78 (221)
++++.+|++++.++ +|+.+ ++++|+|+||+|||| |||.|++| +||||.||+||+++||++|+|||
T Consensus 140 ~i~~~~tv~~m~~~~~~~~r~~~~i~~g~f~YPlLQAa--------Dil~~~ad---~vpvG~DQ~~~l~l~Rdla~r~n 208 (690)
T 3p0j_A 140 DIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCC--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIG 208 (690)
T ss_dssp HHHHTSCHHHHHTTC-------CCCCCSCSSHHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHTT
T ss_pred HHHhhCCHHHHHhhhhhhhhccCCCchhhHhhHHHHHH--------HHHhhCCC---EEeccccHHHHHHHHHHHHHHhC
Confidence 46788999999874 34332 379999999999999 99999995 79999999999999999999999
Q ss_pred CC-CccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcc-hhhhhhhcCCC---ccchhHHHHH
Q 027582 79 YH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-SVELHRKLGAN---LEVDIPVKYL 153 (221)
Q Consensus 79 ~~-~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~-~~~~~~~~~~~---p~v~~~~~~l 153 (221)
+. +|.++++++||||+++++|||||++||+|+|+|+|++|++||++ ||||++. +..++.++|++ ++.++++.|+
T Consensus 209 ~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D~p~~i~kKI~~-A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~ 287 (690)
T 3p0j_A 209 RKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYF 287 (690)
T ss_dssp CCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTTCCHHHHHHHHHT-SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHH
T ss_pred CCCCceEeecCeeecCCCCCcCCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCcccccccccCCCCcccCCCCchHHHHH
Confidence 85 78888899999994445799999998899999999999999999 9999874 22233455554 6889999999
Q ss_pred hhhcC------------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHhcC
Q 027582 154 SFFLE------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 214 (221)
Q Consensus 154 ~~~~~------------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~--~l~~il~~~ 214 (221)
.+|.. +++++++++++|++|+++|++||+.|+++|+++|+|||+||+++.++ ++++++.-+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae~i~~~L~Pirer~~~~~~~~~~l~~v~~~~ 362 (690)
T 3p0j_A 288 QCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKSYR 362 (690)
T ss_dssp HHTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred HHhhcccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHh
Confidence 98632 24689999999999999999999999999999999999999998765 788887654
No 22
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-43 Score=321.56 Aligned_cols=178 Identities=23% Similarity=0.402 Sum_probs=155.3
Q ss_pred ccccccccHHHHHHhh---CCC--CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHH
Q 027582 2 VKVAKCVTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 76 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~---g~~--~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~ 76 (221)
..+++.+|++++.+.. ++. ++.++|+|+||+|||| |||.|++| +||||.||+||+++||++|+|
T Consensus 135 ~~~~~~~~~~~m~~~~~~k~r~~~~~i~~g~f~YP~LQaa--------Dil~~~~~---~vp~G~DQ~~~i~l~rdla~r 203 (375)
T 2cyc_A 135 IDISKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVA--------DIFYQGVT---IAHAGMDQRKAHVIAIEVAQK 203 (375)
T ss_dssp HHHHTTSBHHHHHHTGGGGTCCCCTTCBTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGG
T ss_pred HHHhceeEHHHHhccchhhhhccCCCCChHHHHHHHHHHH--------HHHHhCCC---eecccchHHHHHHHHHHHHHH
Confidence 3568899999999754 432 3478999999999999 99999995 799999999999999999999
Q ss_pred hCC--------C-CccccccCcccCCCCC----------------CCCcCCCCCCCceecCCCHHHHHHHHhhccccCCc
Q 027582 77 IGY--------H-KPALIESSFFPALQGE----------------TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ 131 (221)
Q Consensus 77 ~n~--------~-~p~~l~~~~lp~L~g~----------------~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~ 131 (221)
||+ . +|.++++++||||+|+ ++|||||+++|+|+|+|+|++|++||++ |+||+.
T Consensus 204 ~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~-A~t~~~ 282 (375)
T 2cyc_A 204 LRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAR 282 (375)
T ss_dssp CSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHH-SCCCTT
T ss_pred hCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHH-hcCCCC
Confidence 998 4 7888889999999996 4799999987899999999999999999 999875
Q ss_pred chhhhhhhcCCCccchhHHHHHhhhcC-C------------------hHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 027582 132 ESVELHRKLGANLEVDIPVKYLSFFLE-D------------------DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 192 (221)
Q Consensus 132 ~~~~~~~~~~~~p~v~~~~~~l~~~~~-~------------------~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l 192 (221)
. ++.+.++.|+++|+. + .+++++|+++|.+|+++++++|+.||+.|+++|
T Consensus 283 ~-----------~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l 351 (375)
T 2cyc_A 283 E-----------VRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLL 351 (375)
T ss_dssp C-----------CSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred C-----------CCCChHHHHHHHHhcCCCCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3 334556678877641 1 457999999999988999999999999999999
Q ss_pred HHHHHHHHHH
Q 027582 193 ERHQVARAAV 202 (221)
Q Consensus 193 ~pire~~~~~ 202 (221)
+|+|++|++.
T Consensus 352 ~pir~~~~~~ 361 (375)
T 2cyc_A 352 EPIRRYFEKH 361 (375)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999999965
No 23
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=2.3e-43 Score=319.03 Aligned_cols=176 Identities=27% Similarity=0.408 Sum_probs=151.1
Q ss_pred cccccccHHHHHHhh---CCC---CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHH
Q 027582 3 KVAKCVTYNKVVGIF---GFT---GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 76 (221)
Q Consensus 3 ~l~r~~t~k~~~~~~---g~~---~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~ 76 (221)
+|++.+|++++.+.. ++. +++++|+|+||+|||| ||+.|++| +||||.||++|+++||++|+|
T Consensus 132 ~l~~~~t~~~l~r~~~~k~r~~~~~~i~~g~~~YP~LQaa--------Dil~~~~~---~v~~G~DQ~~~~~l~rdla~r 200 (364)
T 2cya_A 132 RVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVS--------DIFYMDLD---IALGGMDQRKAHMLARDVAEK 200 (364)
T ss_dssp HHHHTSCHHHHHTTC------CCGGGSCTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHHTT
T ss_pred HHHCcCcHHHHHcCchhhhhhcCCCCccchhhhhHHHHHh--------hHHhcCCC---EEeccchHHHHHHHHHHHHHH
Confidence 477788888887642 322 2367999999999999 99999995 799999999999999999999
Q ss_pred hCCCCccccccCcccCCCC---------------CCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcC
Q 027582 77 IGYHKPALIESSFFPALQG---------------ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLG 141 (221)
Q Consensus 77 ~n~~~p~~l~~~~lp~L~g---------------~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~ 141 (221)
||+++|.++++++||||+| +++|||||+++|+|+|+|+|++|++||++ ||||+..+
T Consensus 201 ~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d~p~~i~~Ki~~-a~td~~~~-------- 271 (364)
T 2cya_A 201 LGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDSDDDIRRKIRK-AYCPAKQV-------- 271 (364)
T ss_dssp TTCCCCEEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTCCHHHHHHHHHT-SCCCTTCC--------
T ss_pred cCCCCceeeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccCCHHHHHHHHHh-CcCCCCCC--------
Confidence 9999999999999999997 45899999888899999999999999999 99998643
Q ss_pred CCccchhHHHHHhhhcC-------------------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 027582 142 ANLEVDIPVKYLSFFLE-------------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 201 (221)
Q Consensus 142 ~~p~v~~~~~~l~~~~~-------------------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~ 201 (221)
+.+.++.|+++|+. +.+++++|+++|.+|+++++++|+.||++|+++|+|+|++|++
T Consensus 272 ---~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~ 347 (364)
T 2cya_A 272 ---QGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347 (364)
T ss_dssp ---TTCHHHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---CCCcHHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23446778877651 2348999999999998999999999999999999999999995
No 24
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=4.6e-43 Score=315.36 Aligned_cols=179 Identities=20% Similarity=0.324 Sum_probs=139.4
Q ss_pred cccccccHHHHHH---hhCCC--CCCcccccchhhhhccCCCCCCCCccccc---CCCCcccccCCCCchHHHHHHHHHH
Q 027582 3 KVAKCVTYNKVVG---IFGFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSG---KDHLRCLIPCAIDQDPYFRMTRDVA 74 (221)
Q Consensus 3 ~l~r~~t~k~~~~---~~g~~--~~~~~g~l~YP~lqaa~~~~~~~~Dil~~---~ad~~~~vpvG~DQ~~h~~laR~ia 74 (221)
.+++.++++++.+ ..++. ++.++|+|+||+|||| ||+.+ ++| +||||.||++|++++|++|
T Consensus 139 ~v~~~~~~~~m~~~~~~~~r~~~~~i~~g~f~YP~lQaa--------Dil~~~~~~~~---~~~~G~DQ~~~i~l~Rdia 207 (348)
T 2j5b_A 139 DIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAA--------DVFELVPEGID---ICQLGIDQRKVNMLAIEYA 207 (348)
T ss_dssp HHHHHHHHHHHTC-----------------CCHHHHHHH--------HHHHSSTTCCS---EECCBGGGHHHHHHHHHHH
T ss_pred HHHhheeHHHHHhhhhhhhhhccCCcChHHHhhHHHHHH--------HHHHHhcCCCc---EEEeccChHHHHHHHHHHH
Confidence 4566777777765 23332 3579999999999999 99999 884 7999999999999999999
Q ss_pred HHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchh----HH
Q 027582 75 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI----PV 150 (221)
Q Consensus 75 ~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~----~~ 150 (221)
+|||+..|.++++++||||+|+++|||||+++|+|+|+|+|++|++||++ |+||+.. .+ ||.+.. ++
T Consensus 208 ~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~p~~i~kKI~k-a~td~~~-------~~-~~~~~~~~~~~~ 278 (348)
T 2j5b_A 208 NDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDTEQEVSEKISR-AYCTDET-------FD-NPIFEYIKYLLL 278 (348)
T ss_dssp HHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCCHHHHHHHHHH-SCCCSSS-------TT-CHHHHHHHHTHH
T ss_pred HHhCCCCceeecCccccCCCCcccccccCCCCCeEeecCCHHHHHHHHhc-ccCCCCC-------CC-CchHhHHHHhhh
Confidence 99999999998899999997666899999987899999999999999999 9999863 13 443321 12
Q ss_pred HHHhhhc---CChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027582 151 KYLSFFL---EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 203 (221)
Q Consensus 151 ~~l~~~~---~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~ 203 (221)
.+++.|+ .+.+++++|+++|+ | ++++++|+.||++|+++|+|||++|++..
T Consensus 279 ~~~~~~~i~~~~~~~~~el~~~~~-~-~~~~~~K~~la~~l~~~l~pir~~~~~~~ 332 (348)
T 2j5b_A 279 RWFGTLNLCGKIYTDIESIQEDFS-S-MNKRELKTDVANYINTIIDLVREHFKKPE 332 (348)
T ss_dssp HHHSCEEETTEEESSHHHHHHHHT-T-SCHHHHHHHHHHHHHHHHHHHHHHTTSGG
T ss_pred hhhcccccccCCcchHHHHHHHHc-c-cCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2222110 13467999999999 5 89999999999999999999999998763
No 25
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=6.8e-41 Score=298.39 Aligned_cols=173 Identities=23% Similarity=0.364 Sum_probs=152.3
Q ss_pred cccccccHHHHHHhh---CCC-CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582 3 KVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 78 (221)
Q Consensus 3 ~l~r~~t~k~~~~~~---g~~-~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n 78 (221)
.+++.+|++++.+.. ++. ++.++|+|+||+|||| ||+.++++ +||||.||++|++++|++|++||
T Consensus 127 ~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~lqaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdla~~~~ 195 (323)
T 2cyb_A 127 KMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQAL--------DIAHLGVD---LAVGGIDQRKIHMLARENLPRLG 195 (323)
T ss_dssp HHHHHSBHHHHHHHTTTTCSCSSSCBTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGT
T ss_pred HHhCccCHHHHhccchhhccccCCCCchhhhhHHHHHH--------HHHhcCCC---EEEechhhHHHHHHHHHHHHhcC
Confidence 467889999998864 432 3469999999999999 99999994 79999999999999999999999
Q ss_pred CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhc-
Q 027582 79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL- 157 (221)
Q Consensus 79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~- 157 (221)
+++|..+++++||+|+| +||||| ++|+|+|+|+|++|++||++ |+||++. ++.++++.|+++|.
T Consensus 196 ~~~p~~l~~pll~~l~G--~KMSKS-~~n~I~l~d~p~~i~~Ki~~-a~td~~~-----------~~~~~~~~~~~~~~~ 260 (323)
T 2cyb_A 196 YSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPPEEVERKIRK-AYCPAGV-----------VEENPILDIAKYHIL 260 (323)
T ss_dssp CCCCEEEEECCCBCTTS--SBCCTT-TTCSCBTTCCHHHHHHHHHT-SCCCTTC-----------CTTCHHHHHHHHTHH
T ss_pred CCCceEEecCcccCCCC--CcccCC-cCceeCCCCCHHHHHHHHHh-cCCCCCC-----------CCcChHHHHHHHHhc
Confidence 99999999999999998 799999 56799999999999999999 9998753 33467788888874
Q ss_pred ---------------C--ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 027582 158 ---------------E--DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 201 (221)
Q Consensus 158 ---------------~--~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~ 201 (221)
. +.+++++++++|++|+++|++||+.||++|+++|+|||+||++
T Consensus 261 p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~~l~pir~~~~~ 321 (323)
T 2cyb_A 261 PRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNMLLEDARKRLGV 321 (323)
T ss_dssp HHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccCceeEechhhcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 2458999999999999999999999999999999999999975
No 26
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=4.9e-41 Score=304.54 Aligned_cols=177 Identities=21% Similarity=0.272 Sum_probs=144.3
Q ss_pred cccccccHHHHHHh----hCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582 3 KVAKCVTYNKVVGI----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 78 (221)
Q Consensus 3 ~l~r~~t~k~~~~~----~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n 78 (221)
++++.+|+.++++. .++.++.++|+|+||+|||| ||+.|++ ++||||.||++|++++|+++++||
T Consensus 135 ~l~~~~t~~~~~~~~~~v~~~~~~~~~g~~~YP~lQaa--------Dil~~~a---~~v~~G~DQ~~~~~l~rdl~~r~~ 203 (372)
T 1n3l_A 135 RLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQAL--------DEEYLKV---DAQFGGIDQRKIFTFAEKYLPALG 203 (372)
T ss_dssp HHHTTSCHHHHHHHTTTTSCCCSSCCHHHHHHHHHHHH--------HHHHTTC---SEEEEEGGGHHHHHHHHHHGGGGT
T ss_pred HHHhhCcHHHHHhchhhhhcccCCCcceeeecchHhhc--------cHHHhcC---CEEEcChhHHHHHHHHHHHHHHcC
Confidence 46777888888874 34456789999999999999 9999999 479999999999999999999999
Q ss_pred CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccc----hhHHHHHh
Q 027582 79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV----DIPVKYLS 154 (221)
Q Consensus 79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v----~~~~~~l~ 154 (221)
+++|..+++++||||+| +|||||++|++|+|+|+|++|++||++ ||||+..+ +.++.. .++|.+++
T Consensus 204 ~~~p~~l~~pll~gldG--~KMSKS~~ns~I~L~d~p~~i~kKi~~-A~td~~~~-------~d~~v~~~lk~~l~~~~~ 273 (372)
T 1n3l_A 204 YSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKK-AFCEPGNV-------ENNGVLSFIKHVLFPLKS 273 (372)
T ss_dssp CCCCEEEEECCCCCSSC--C-------CCSCBTTCCHHHHHHHHHT-CCCCTTCC-------SSCHHHHHHHHTTGGGTT
T ss_pred CCCCEEEecCccCCCCc--ccccCCCCCCeEeccCCHHHHHHHHHH-ccCCCCCC-------CcccHHHHHHHhhhhhhc
Confidence 99999999999999998 699999998899999999999999999 99998642 223221 12333333
Q ss_pred hhcC----------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 027582 155 FFLE----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 200 (221)
Q Consensus 155 ~~~~----------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~ 200 (221)
.|+. +.+++++|+++|.+|+++++++|+.||+.|+++|+|+|++++
T Consensus 274 ~f~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 274 EFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN 329 (372)
T ss_dssp CEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 4541 346899999999998899999999999999999999999998
No 27
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=1.3e-40 Score=295.66 Aligned_cols=170 Identities=20% Similarity=0.246 Sum_probs=149.1
Q ss_pred cccccccHHHHHHhh---CCC-CCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582 3 KVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 78 (221)
Q Consensus 3 ~l~r~~t~k~~~~~~---g~~-~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n 78 (221)
.+++.+|++++.+.. ++. +..++|+|+||+|||| ||+.+++ ++||||.||++|++++|++++
T Consensus 120 ~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~LQaa--------Dil~~~~---~~v~~G~DQ~~~~~l~R~i~~--- 185 (314)
T 2zp1_A 120 RLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVN--------TSHYLGV---DVAVGGMEQRKIHMLARELLP--- 185 (314)
T ss_dssp HHHHHSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHHTC---SEEEEEGGGHHHHHHHHHHSS---
T ss_pred HHHCcCcHHHHhccchhhhhccCCCCchhhhhHHHHHH--------hHHhhCC---CEEEcChhHHHHHHHHHHhcC---
Confidence 478899999998853 332 2249999999999999 9999999 479999999999999999997
Q ss_pred CCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhhc-
Q 027582 79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL- 157 (221)
Q Consensus 79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~~- 157 (221)
++|.++++++||||+| ++||||| ++|+|+|+|+|++|++||++ |+||++.+ +.++++.|+++|.
T Consensus 186 -~~~~~~~~~~l~~l~G-~~KMSKS-~~~~I~L~d~~~~i~~KI~~-a~td~~~~-----------~~~~~~~~~~~~~~ 250 (314)
T 2zp1_A 186 -KKVVCIHNPVLTGLDG-EGKMSSS-KGNFIAVDDSPEEIRAKIKK-AYCPAGVV-----------EGNPIMEIAKYFLE 250 (314)
T ss_dssp -SCCEEEEECCCBCTTS-SSBCCTT-TTCSCBTTCCHHHHHHHHHH-SCCCTTCC-----------TTCHHHHHHHHHCC
T ss_pred -CCcEEeeccccccCCc-ccccCCC-CcceecCCCCHHHHHHHHHh-CCCCCCCC-----------CCCcHHHHHHHHhc
Confidence 6888889999999996 4799999 66799999999999999999 99997642 3577889999885
Q ss_pred ------------C--ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 027582 158 ------------E--DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 201 (221)
Q Consensus 158 ------------~--~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~ 201 (221)
. +..++++|+++|++|+++|+++|+.||+.|+++|+|+|++|+.
T Consensus 251 ~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l~p~r~~~~~ 308 (314)
T 2zp1_A 251 YPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKILEPIRKRLLE 308 (314)
T ss_dssp SSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 3458999999999999999999999999999999999999974
No 28
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-39 Score=296.68 Aligned_cols=191 Identities=24% Similarity=0.253 Sum_probs=145.3
Q ss_pred cccccccHHHHHHhh----CCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582 3 KVAKCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 78 (221)
Q Consensus 3 ~l~r~~t~k~~~~~~----g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n 78 (221)
.+++.+|++++.+.- ++.++.++|+|+||+|||| ||+.|+++ +||+|.||++|++++|+++++||
T Consensus 139 ~l~~~~t~~~l~r~~~~~~r~~~~~~~g~~~YP~lQaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdl~~r~~ 207 (394)
T 2dlc_X 139 RLSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQAL--------DEQFLDVD---CQFGGVDQRKIFVLAEENLPSLG 207 (394)
T ss_dssp HHHTTSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGT
T ss_pred HHhCcCcHHHHhcccHhhhcccCCccceeeechhHhhc--------cHhhhCCC---EEecCccHHHHHHHHHHHHHHcC
Confidence 467788998888752 3345689999999999999 99999995 79999999999999999999999
Q ss_pred CCCccccccCcccCCC-CCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhh---hhh---------hcCCCcc
Q 027582 79 YHKPALIESSFFPALQ-GETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVE---LHR---------KLGANLE 145 (221)
Q Consensus 79 ~~~p~~l~~~~lp~L~-g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~---~~~---------~~~~~p~ 145 (221)
+++|..+++++||||+ | +|||||++|++|+|+|+|++|++||++ |+||+..+.. ..+ ++...++
T Consensus 208 ~~~p~~l~~pll~gl~~G--~KMSKS~~ns~I~L~D~p~~i~kKI~k-a~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g 284 (394)
T 2dlc_X 208 YKKRAHLMNPMVPGLAQG--GKMSASDPNSKIDLLEEPKQVKKKINS-AFCSPGNVEENGLLSFVQYVIAPIQELKFGTN 284 (394)
T ss_dssp CCCCEEEEECCCCCCC------------CCSCBTTCCHHHHHHHHHH-SCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTT
T ss_pred CCCCEEEecccccCCCCC--CcCCCCCCCCEEeccCCHHHHHHHHHH-hcCCCCCCCcchHHHHHHhhhcchhhhcccCC
Confidence 9999999999999999 5 799999998889999999999999999 9999864310 000 1111111
Q ss_pred chhHHHH------HhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHh
Q 027582 146 VDIPVKY------LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMA 212 (221)
Q Consensus 146 v~~~~~~------l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~~~~l~~il~ 212 (221)
+.+ |.+ +.++ +.+++++|+++|.+|+++++++|+.||++|+++|+|+|++++.-. .+++++.
T Consensus 285 ~~~-~~i~~~~~~~~~~--~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~~~~--~~~~~~~ 352 (394)
T 2dlc_X 285 HFE-FFIDRPEKFGGPI--TYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNK--EFQEASE 352 (394)
T ss_dssp CCC-EEECCCGGGSCCE--EESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHH
T ss_pred Cce-EEEeccccccCcC--CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHCCH--HHHHHHh
Confidence 111 122 3333 456899999999988899999999999999999999999988432 3555554
No 29
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=3.4e-38 Score=290.45 Aligned_cols=174 Identities=18% Similarity=0.139 Sum_probs=147.6
Q ss_pred cccccccHHHHHHhhC------CCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHH
Q 027582 3 KVAKCVTYNKVVGIFG------FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 76 (221)
Q Consensus 3 ~l~r~~t~k~~~~~~g------~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~ 76 (221)
++.+++|++++.++.+ ..+++++|+|+||+|||| ||+.++++ +||||.||++|++++|++|+|
T Consensus 142 ~l~~~~tv~~ml~~~~~k~r~~~~~~is~~ef~YPlLQaa--------Dil~l~~~---l~~gG~DQ~~ni~l~rdlarr 210 (432)
T 1h3f_A 142 RLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAY--------DSVAIRAD---VEMGGTDQRFNLLVGREVQRA 210 (432)
T ss_dssp HHHTTSBHHHHTTSHHHHHHHHTTCCCBGGGGTHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHHHHH
T ss_pred HHhCcCcHHHHHhhhhHHHHhhcCCCCCccccchhhHHhh--------hhhhcCcc---EEEechHHHHHHHHHHHHHHH
Confidence 4566777777654322 135689999999999999 99999984 799999999999999999999
Q ss_pred hCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhhh
Q 027582 77 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF 156 (221)
Q Consensus 77 ~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~~ 156 (221)
||..++.++++|+||||+| ++|||||++| +|+|+|+|++|++||++ +.+ ++++.|+++|
T Consensus 211 ~~~~~~~~lt~pll~gldG-~~KMSKS~~n-~I~L~dsp~~i~~Ki~~-~~d------------------~~v~~~l~~f 269 (432)
T 1h3f_A 211 YGQSPQVCFLMPLLVGLDG-REKMSKSLDN-YIGLTEPPEAMFKKLMR-VPD------------------PLLPSYFRLL 269 (432)
T ss_dssp TTCCCCEEEEECCCBCTTS-SSBCCGGGTC-CCBTTSCHHHHHHHHHT-SCG------------------GGHHHHHHHH
T ss_pred hCCCCceEeecccccCCCC-ccccCcCCCC-eeCCCCCHHHHHHHHhC-CCc------------------cHHHHHHHHc
Confidence 9988888888999999998 3699999986 99999999999999999 732 3557899998
Q ss_pred cCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhH----HHHHHHHHHhHH-HHHHHHhc
Q 027582 157 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE----RHQVARAAVTDE-MVDAFMAV 213 (221)
Q Consensus 157 ~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~----pire~~~~~~~~-~l~~il~~ 213 (221)
+ +.+.+|+++.+.. +++++|+.||+.|+++++ |||+||+++++. +|+++|+.
T Consensus 270 t--~~~~eei~~~~~~---~~~~~K~~LA~~i~~~l~~~~~pirerr~~~~~~~~v~~il~~ 326 (432)
T 1h3f_A 270 T--DLEEEEIEALLKA---GPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFGR 326 (432)
T ss_dssp C--CCCHHHHHHHHHH---CHHHHHHHHHHHHHHHHHSSSCCSCCSHHHHHHTTCCGGGTTC
T ss_pred C--CCCHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccchHHHHHHHhhchHHHHHHHhh
Confidence 5 3456666666654 899999999999999999 999999999865 88888876
No 30
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=3.5e-37 Score=297.36 Aligned_cols=176 Identities=15% Similarity=0.178 Sum_probs=147.5
Q ss_pred ccccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCC
Q 027582 2 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK 81 (221)
Q Consensus 2 ~~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~ 81 (221)
.+|++.+|++++++++| .++.++|+|+||+|||| ||+.+++| ++|||+||++|++|||++|++++ +
T Consensus 481 i~la~~~tl~r~~~~~~-~~~~~i~~~~YPlmQaa--------Di~~l~aD---i~~gG~DQ~~~~~LaRd~~~~~~--~ 546 (690)
T 3p0j_A 481 IGIARKNLLSHVEELYG-GEVRNAGQVIAALMRVA--------TALMLSVS---HVISTSLDGHINAFAREYTKERI--D 546 (690)
T ss_dssp HHHHTTSCHHHHHHHTT-SCCSSHHHHHHHHHHHH--------HHHHTTCS---EEEECSTTTTTTHHHHHHTTTCS--E
T ss_pred HHHHHhhhHHHHHHHhC-CCCcchHHHHHHHHHHh--------hhhccCCC---EEecccccHHHHHHHHHHHHhcc--C
Confidence 57899999999999986 57789999999999999 99999997 58999999999999999999976 6
Q ss_pred ccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhh----hc
Q 027582 82 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF----FL 157 (221)
Q Consensus 82 p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~----~~ 157 (221)
|..++++++|+|+|++.+||||+++|+|+|+|+|++|++||++ |||+++ + ++||.+..+ .|+.+ |+
T Consensus 547 ~~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~k-A~c~p~--v------e~np~l~~~-~~~~~~~~~~~ 616 (690)
T 3p0j_A 547 CVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPN--E------EANPVISVA-QHLLAQHGALS 616 (690)
T ss_dssp EEECCCCSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHH-SCCCTT--C------SCSHHHHHH-HHHHHHHSCEE
T ss_pred cccccccccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHH-hcCCCC--C------CCChHHHHH-HHHhccCCceE
Confidence 7778889999999997777788888999999999999999999 999985 2 578866542 33211 11
Q ss_pred -C---------ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 027582 158 -E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 201 (221)
Q Consensus 158 -~---------~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~ 201 (221)
+ +.+++++|+++|.+|++||+|+|++|+++|+++|+|+|++++.
T Consensus 617 i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~~~~ 670 (690)
T 3p0j_A 617 IERGEANGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNG 670 (690)
T ss_dssp ECCCTTTTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EechhhhCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 1368999999999999999999999999999999999999983
No 31
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=2.8e-37 Score=275.12 Aligned_cols=164 Identities=16% Similarity=0.121 Sum_probs=138.1
Q ss_pred ccccccHHHHHHhhCC-CCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582 4 VAKCVTYNKVVGIFGF-TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAPRIG 78 (221)
Q Consensus 4 l~r~~t~k~~~~~~g~-~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~ia~~~n 78 (221)
++|+.+...++.++++ .+++++|+|+||+|||| ||+.| +++ +++||.||+||+++|||+|+|||
T Consensus 148 v~~m~~~~~~k~r~~~~~~~is~g~f~YP~LQaa--------Dil~l~~~~~~~---v~~gG~DQ~~~i~l~rdla~r~n 216 (322)
T 2yxn_A 148 VNQMINKEAVKQRLNREDQGISFTEFSYNLLQGY--------DFACLNKQYGVV---LCIGGSDQWGNITSGIDLTRRLH 216 (322)
T ss_dssp HHHHTTCHHHHHHHHCTTCCCCHHHHTHHHHHHH--------HHHHHHHHHCEE---EEEECTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHhccCCCCccchhhhHHHHHHH--------HHHHHhccCCce---EEecCchhHHHHHHHHHHHHHhC
Confidence 3444444444444443 34679999999999999 99999 874 57779999999999999999999
Q ss_pred CCCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHHHHhh
Q 027582 79 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 155 (221)
Q Consensus 79 ~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~~l~~ 155 (221)
..++..+..|+|||++| +|||||++| +|+|+| +|+++++||++ + + .+.+++|+.+
T Consensus 217 ~~~~~~l~~pll~gldG--~KMSKS~~n-~I~L~d~~tsp~~~~~ki~~-~-~-----------------d~~v~~~l~~ 274 (322)
T 2yxn_A 217 QNQVFGLTVPLITKADG--TKFGKTEGG-AVWLDPKKTSPYKFYQFWIN-T-A-----------------DADVYRFLKF 274 (322)
T ss_dssp CCCCEEEECCCCBCTTS--CBTTEETTE-ECBSSTTTSCHHHHHHHHHT-C-C-----------------HHHHHHHHHH
T ss_pred CCCceeeccCccCCCCc--ccccCCCCC-eeeccCCCCCHHHHHHHHhC-C-C-----------------cccHHHHHHH
Confidence 98888888999999998 699999997 999999 99999999999 5 1 1334566666
Q ss_pred hcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 027582 156 FLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 201 (221)
Q Consensus 156 ~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~ 201 (221)
|+. +++++++++++|++|. +++++|+.||+.|+++++|.+++++.
T Consensus 275 ~~~~~~~~i~~l~~~~~~g~-~~~~~K~~La~~i~~~l~~~~~~~~a 320 (322)
T 2yxn_A 275 FTFMSIEEINALEEEDKNSG-KAPRAQYVLAEQVTRLVHGEEGLQAA 320 (322)
T ss_dssp HCCCCHHHHHHHHHHHHHHS-SCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 653 7889999999999886 99999999999999999999998764
No 32
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=4.1e-37 Score=277.29 Aligned_cols=167 Identities=14% Similarity=0.113 Sum_probs=127.4
Q ss_pred ccccccHHHHHHh------hCCCCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHH
Q 027582 4 VAKCVTYNKVVGI------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDV 73 (221)
Q Consensus 4 l~r~~t~k~~~~~------~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~i 73 (221)
+++.++++++.+. ....+++++|+|+||+|||| ||+.| +++ +||||.||+||+++|||+
T Consensus 162 ~~~~~~v~~m~~~~~~k~r~~~~~~is~g~f~YPvLQAa--------Dil~l~~~~~~~---i~p~G~DQ~~~i~l~rdl 230 (356)
T 2pid_A 162 VGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAY--------DFYYLFQRYGCR---VQLGGSDQLGNIMSGYEF 230 (356)
T ss_dssp HGGGSBHHHHHHCHHHHHHHTSTTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEEEGGGHHHHHHHHHH
T ss_pred HhcceeHHHHhcchHHHHhhccCCCCchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHH
Confidence 3445566655553 22234689999999999999 99999 995 799999999999999999
Q ss_pred HHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHH
Q 027582 74 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV 150 (221)
Q Consensus 74 a~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~ 150 (221)
|+|||..+|..++.++||||+| +|||||.+ |+|+|+| +|++|++||++ + + +++|.+++
T Consensus 231 a~r~n~~~~~~l~~pll~~ldG--~KMSKS~~-naI~L~d~~tsp~~i~~ki~~-~-~--------------D~~v~~~l 291 (356)
T 2pid_A 231 INKLTGEDVFGITVPLITSTTG--AKLGKSAG-NAVWLNRDKTSPFELYQFFVR-Q-P--------------DDSVERYL 291 (356)
T ss_dssp HHHHSSCCCEEEEECCCC----------------CCBSSTTTSCHHHHHHHHHT-C-C--------------HHHHHHHH
T ss_pred HHHhCCCCccccccccccCCCc--ccccCCCC-CeeeccCCCCCHHHHHHHHHc-C-C--------------chhHHHHH
Confidence 9999998888899999999998 69999975 5999999 99999999999 5 2 12244444
Q ss_pred HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027582 151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 203 (221)
Q Consensus 151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~ 203 (221)
.++.++ +.+++++|+++|++| .+++++|+.||+.|+++++..++..+...
T Consensus 292 ~~~t~~--~~~~i~~l~~~~~~g-~~~~~~K~~La~~v~~~l~g~~~~~~a~~ 341 (356)
T 2pid_A 292 KLFTFL--PLPEIDHIMQLHVKE-PERRGPQKRLAAEVTKLVHGREGLDSAKR 341 (356)
T ss_dssp HHHCCC--CHHHHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcC--CchHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 444433 678999999999988 59999999999999999999998876543
No 33
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.9e-35 Score=271.78 Aligned_cols=166 Identities=17% Similarity=0.128 Sum_probs=141.9
Q ss_pred ccccccHHHHHHhhCC-----CCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHHH
Q 027582 4 VAKCVTYNKVVGIFGF-----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVA 74 (221)
Q Consensus 4 l~r~~t~k~~~~~~g~-----~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~ia 74 (221)
+++.+|++++.+...+ .+++++|+|+||+|||| ||+.| +++ +||||.||++|++++||+|
T Consensus 140 l~~~~tv~~m~~~~~~k~r~~~~~is~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~ni~lgrdla 208 (432)
T 2jan_A 140 IGKHFSVNVMLARDTIRRRLAGEGISYTEFSYLLLQAN--------DYVELHRRHGCT---LQIGGADQWGNIIAGVRLV 208 (432)
T ss_dssp TGGGCBHHHHHHSHHHHHHTSTTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEECSTTHHHHHHHHHHH
T ss_pred HhccCcHHHHhcchHHhhhhcCCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHHH
Confidence 5677777777763221 35689999999999999 99999 985 7999999999999999999
Q ss_pred HHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHH
Q 027582 75 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK 151 (221)
Q Consensus 75 ~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~ 151 (221)
+|||..+|..++.|+|||++| +|||||++|++|+|+| +|+++++||++ + + +++| ++
T Consensus 209 rr~~~~~~~~l~~plL~~ldG--~KMSKS~~nsaI~L~d~~tsp~~i~qki~~-~-~--------------D~~v---~~ 267 (432)
T 2jan_A 209 RQKLGATVHALTVPLVTAADG--TKFGKSTGGGSLWLDPQMTSPYAWYQYFVN-T-A--------------DADV---IR 267 (432)
T ss_dssp HHHHCCCCEEEECCCCBCTTS--CBTTBCSSSCBCBSSTTTSCHHHHHHHHHT-C-C--------------HHHH---HH
T ss_pred HHhCCCCccccccccccCCCc--CcCCCCCCCCeEEccCCCCCHHHHHHHHhc-C-C--------------chhH---HH
Confidence 999998888899999999999 6999999988999999 99999999999 5 1 1224 45
Q ss_pred HHhhhcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582 152 YLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 202 (221)
Q Consensus 152 ~l~~~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~ 202 (221)
|+.+|+. +.+++++|+++|.+|. +++++|+.||+.|++++++.++..+..
T Consensus 268 ~l~l~t~~~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~ 318 (432)
T 2jan_A 268 YLRWFTFLSADELAELEQATAQRP-QQRAAQRRLASELTVLVHGEAATAAVE 318 (432)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 5555542 6789999999999885 999999999999999999998876654
No 34
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=1.4e-35 Score=270.19 Aligned_cols=168 Identities=17% Similarity=0.137 Sum_probs=137.5
Q ss_pred cccccccHHHHHHhhCCCCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHHHHHhC
Q 027582 3 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAPRIG 78 (221)
Q Consensus 3 ~l~r~~t~k~~~~~~g~~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~ia~~~n 78 (221)
.++||++...++.+++..+++++|+|+||+|||| ||+.+ ++ ++||||.||++|++++||+|+|||
T Consensus 189 ~v~rml~~~~~k~r~~~~~~is~gef~YPlLQAa--------Dil~l~~~~~~---~i~~gG~DQ~~ni~~grdlarrfn 257 (392)
T 1y42_X 189 RIGPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGW--------DWFELFYQQGV---QMQIGGSDQYGNIISGLEVVKAAR 257 (392)
T ss_dssp CHHHHHSSHHHHHTTSSSSCCCHHHHHHHHHHHH--------HHHHHHHHHCE---EEEEECTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHhhhhHHHHHhcCCCCcccHHHHHHHHHHH--------HHHHHhccCCc---cEEecCcchHhHHHHHHHHHHHHh
Confidence 3444554444555554456789999999999999 99976 57 479999999999999999999997
Q ss_pred C-----------------CCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhh
Q 027582 79 Y-----------------HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHR 138 (221)
Q Consensus 79 ~-----------------~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~ 138 (221)
. .+|..+++|+||||+| +|||||.+| +|+|+| +|+++++||++ + +
T Consensus 258 ~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~-~---------- 322 (392)
T 1y42_X 258 ESEPDPQERKYVTPKTALDECVGFTVPLLTDSSG--AKFGKSAGN-AIWLDPYQTSVFDFYGYFVR-R-S---------- 322 (392)
T ss_dssp HHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTC--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C-C----------
T ss_pred hhccccccccccccccccCCccccccccCcCCch--hhccCCCCC-eeeccCCCCCHHHHHHHHHc-C-C----------
Confidence 4 4567788999999999 699999865 999999 99999999999 5 2
Q ss_pred hcCCCccchhHHHHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027582 139 KLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 203 (221)
Q Consensus 139 ~~~~~p~v~~~~~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~~ 203 (221)
+++|.+++.++.++ +.+++++|+++|.+|. +++++|+.||+.|++++++.++.++...
T Consensus 323 ----D~~v~~~l~~ft~l--~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~lhg~~~~~~a~~ 380 (392)
T 1y42_X 323 ----DQEVENLLKLFTFM--PISEITKTMEEHIKDP-SKRVAQHTLAREVVTLVHGKQEASAAED 380 (392)
T ss_dssp ----TTTHHHHHHHHCCC--CHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ----chhHHHHHHHHHhC--ChhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 23454444444433 6889999999999885 9999999999999999999999877643
No 35
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=1.3e-34 Score=265.92 Aligned_cols=165 Identities=16% Similarity=0.195 Sum_probs=141.6
Q ss_pred ccccccHHHHHHhhCC----CCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHHHH
Q 027582 4 VAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAP 75 (221)
Q Consensus 4 l~r~~t~k~~~~~~g~----~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~ia~ 75 (221)
+++++|++++.+...+ .+++++|+|+||+|||| ||+.+ +++ +||||.||++|++++||+|+
T Consensus 140 ~~~~~tv~~m~~~~~~k~r~~~~is~~ef~YplLQaa--------D~l~l~~~~~~~---i~~gG~DQ~~ni~~grdla~ 208 (420)
T 1jil_A 140 YGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAI--------DFGHLNRELNCK---IQVGGSDQWGNITSGIELMR 208 (420)
T ss_dssp TGGGCCHHHHHTCGGGHHHHTTTCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHHHHHHHHH
T ss_pred HhccccHHHHhcchhhhhhccCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHHHH
Confidence 5678888888775433 45689999999999999 99999 884 79999999999999999999
Q ss_pred Hh-CCCCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHH
Q 027582 76 RI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK 151 (221)
Q Consensus 76 ~~-n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~ 151 (221)
|| |..+|..+++|+|||++| +|||||++| +|+|+| +|+++++||++ + + ++++ ++
T Consensus 209 r~~~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~-~--------------D~~v---~~ 266 (420)
T 1jil_A 209 RMYGQTDAYGLTIPLVTKSDG--KKFGKSESG-AVWLDAEKTSPYEFYQFWIN-Q-S--------------DEDV---IK 266 (420)
T ss_dssp HHHCCCCCEEEEECCCBCTTS--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C-C--------------HHHH---HH
T ss_pred HhcCCCCeeEeecccccCCcc--ccccCCCCC-eEecCCCCCCHHHHHHHHhc-C-C--------------chhH---HH
Confidence 99 988888899999999999 699999975 999999 99999999999 5 1 1223 45
Q ss_pred HHhhhcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582 152 YLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 202 (221)
Q Consensus 152 ~l~~~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~ 202 (221)
|+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+..
T Consensus 267 ~l~~~t~~~~~ei~~l~~~~~~g~-~~~~~K~~La~~v~~~~hg~~~~~~a~ 317 (420)
T 1jil_A 267 FLKYFTFLGKEEIDRLEQSKNEAP-HLREAQKTLAEEVTKFIHGEDALNDAI 317 (420)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 5555542 6789999999999885 999999999999999999988876643
No 36
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=1.1e-34 Score=265.99 Aligned_cols=165 Identities=17% Similarity=0.207 Sum_probs=136.8
Q ss_pred ccccccHHHHHHhhCC----CCCCcccccchhhhhccCCCCCCCCccccc----CCCCcccccCCCCchHHHHHHHHHHH
Q 027582 4 VAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAP 75 (221)
Q Consensus 4 l~r~~t~k~~~~~~g~----~~~~~~g~l~YP~lqaa~~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~h~~laR~ia~ 75 (221)
+.+++|++++.+..++ .+++++|+|+||+|||| ||+.+ +++ +||||.||++|++++||+|+
T Consensus 139 ~~~~~tv~rm~~~~~~k~r~~~~is~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~ni~lgrdlar 207 (419)
T 2ts1_A 139 VGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAY--------DFLRLYETEGCR---LQIGGSDQWGNITAGLELIR 207 (419)
T ss_dssp TGGGCCHHHHHTSHHHHTTTTTCCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHHHHHHHHH
T ss_pred HhcccCHHHHhccchhhhccCCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHHHH
Confidence 4566666666553211 45689999999999999 99999 884 79999999999999999999
Q ss_pred Hh-CCCCccccccCcccCCCCCCCCcCCCCCCCceecCC---CHHHHHHHHhhccccCCcchhhhhhhcCCCccchhHHH
Q 027582 76 RI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK 151 (221)
Q Consensus 76 ~~-n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D---~p~~I~~KI~k~A~td~~~~~~~~~~~~~~p~v~~~~~ 151 (221)
|| |..+|..+++|+|||++| +|||||.+| +|+|+| +|+++++||++ + + ++++ ++
T Consensus 208 r~~~~~~~~~lt~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~-~--------------D~~v---~~ 265 (419)
T 2ts1_A 208 KTKGEARAFGLTIPLVTKADG--TKFGKTESG-TIWLDKEKTSPYEFYQFWIN-T-D--------------DRDV---IR 265 (419)
T ss_dssp HHHC--CCEEEEECCCCCTTS--CCTTCCSSC-CCBSSTTTSCHHHHHHHHHT-C-C--------------HHHH---HH
T ss_pred HhcCCCCeeecccccccCCCc--ccccCCCCC-eEecCCCCCCHHHHHHHHhc-C-C--------------chhH---HH
Confidence 99 988888899999999999 699999875 999999 99999999999 5 1 1224 45
Q ss_pred HHhhhcC-ChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027582 152 YLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 202 (221)
Q Consensus 152 ~l~~~~~-~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~~~ 202 (221)
|+.+|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+..
T Consensus 266 ~l~l~t~~~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~ 316 (419)
T 2ts1_A 266 YLKYFTFLSKEEIEALEQELREAP-EKRAAQKTLAEEVTKLVHGEEALRQAI 316 (419)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 5555542 6789999999999885 999999999999999999988876654
No 37
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=96.98 E-value=0.00039 Score=64.78 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=55.6
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCcee-cCC---CHHHHHHHHhh
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK 124 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L~D---~p~~I~~KI~k 124 (221)
++|..|.|+..+-..-..+.+.||.+.|...|.++|.+.+| +|||||+++..|. +.+ .|+.|..-+..
T Consensus 205 thviRG~D~~~~t~~q~~l~~alg~~~P~~~H~plil~~~g--~KLSKr~g~~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 205 TDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTG--QKLSKRDGVTSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp SEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEECSSS--SBCCTTSSCCBHHHHHHTTCCHHHHHHHHHH
T ss_pred CeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeeeEECCCC--CEecccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence 57889999999998888888999999998888999999998 7999999865432 222 47777777766
No 38
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=96.79 E-value=0.0014 Score=57.23 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=39.6
Q ss_pred ccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582 57 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 124 (221)
Q Consensus 57 vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k 124 (221)
|.-|.|+..+...-..+.+.+|.+.|...|.++|.+.+| +||||+.++..|.-.++..-+..-+..
T Consensus 188 vIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g--~KLSKR~g~~~v~~~~~~~~~~~~l~~ 253 (298)
T 1nzj_A 188 IVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLSKQNHAPALPKGDPRPVLIAALQF 253 (298)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---------------CCCSSCCHHHHHHHHHH
T ss_pred EEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC--CcccccCCccChhcCCccHHHHHHHHH
Confidence 344999998887777777999999999989999999988 699999987666655655544444433
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=96.52 E-value=0.0017 Score=60.06 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=67.8
Q ss_pred cccchhhhhccCCCCCCCCcccccCCCCc----------------ccccCCCCchHHHHHHHHHHHHhCCCCccccccCc
Q 027582 26 GKVSFPPVQAVPSFPSSFPHLFSGKDHLR----------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF 89 (221)
Q Consensus 26 g~l~YP~lqaa~~~~~~~~Dil~~~ad~~----------------~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~ 89 (221)
|.+.+|..+.- |..++++|.. |+|..|.|+..|...-..+.+.+|.+.|...+.++
T Consensus 164 G~~~~~~~~~~--------D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~l 235 (468)
T 1j09_A 164 GVVVYDNQEIP--------DVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235 (468)
T ss_dssp EEEEEEGGGSC--------CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECC
T ss_pred eeEeecccCCC--------CeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEeee
Confidence 55777776666 8888888631 23333999999999999999999999898888899
Q ss_pred ccCCCCCCCCcCCCCCCCcee-cCC---CHHHHHHHHhh
Q 027582 90 FPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK 124 (221)
Q Consensus 90 lp~L~g~~~KMSkS~~~s~I~-L~D---~p~~I~~KI~k 124 (221)
+.+.+| +||||++++..|. +.+ .|+.|..-+..
T Consensus 236 i~~~~g--~klSKR~g~~~l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 236 LRNPDK--TKISKRKSHTSLDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp CBCTTS--CBCCTTTSCCBHHHHHHTTCCHHHHHHHHHH
T ss_pred eeCCCC--CccccccchhhHHHHHHCCCCHHHHHHHHHH
Confidence 999988 6999999765432 222 47777777766
No 40
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=96.46 E-value=0.0015 Score=62.21 Aligned_cols=68 Identities=9% Similarity=0.087 Sum_probs=55.4
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCcee-cCC---CHHHHHHHHhh
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK 124 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L~D---~p~~I~~KI~k 124 (221)
++|..|.|+..+...-+.+.+.||.+.|...|.++|.+.+| +||||++++..|. +.+ .|+.|..-+..
T Consensus 317 thvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~g--~KLSKR~g~~~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 317 SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR--TPLSKRHGATSVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp SBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTTS--SBCCTTTCSSBHHHHHHTTCCHHHHHHHHTT
T ss_pred CeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence 46667999999999999999999999998888899999998 6999998753332 222 57888777766
No 41
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=96.19 E-value=0.003 Score=58.67 Aligned_cols=68 Identities=9% Similarity=0.087 Sum_probs=54.7
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCcee-cCC---CHHHHHHHHhh
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK 124 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L~D---~p~~I~~KI~k 124 (221)
|+|.-|.|+..+...-..+.+.||.+.|...|.++|.+.+| +||||++++..|. +.+ .|+.|..-+..
T Consensus 213 ThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g--~KLSKR~g~~~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 213 SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR--TPLSKRHGATSVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTS--SBCCTTTSCCBHHHHHHHTCCHHHHHHHHHH
T ss_pred CEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCC--CcccCcCCcccHHHHHHCCCCHHHHHHHHHH
Confidence 45556999999999999999999999999889999999988 6999998753332 222 57777777766
No 42
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=96.03 E-value=0.003 Score=58.87 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=65.0
Q ss_pred cccchhhhhccCCCCCCCCcccccCCCCc----------------ccccCCCCchHHHHHHHHHHHHh-----CCCCccc
Q 027582 26 GKVSFPPVQAVPSFPSSFPHLFSGKDHLR----------------CLIPCAIDQDPYFRMTRDVAPRI-----GYHKPAL 84 (221)
Q Consensus 26 g~l~YP~lqaa~~~~~~~~Dil~~~ad~~----------------~~vpvG~DQ~~h~~laR~ia~~~-----n~~~p~~ 84 (221)
|.+.|+.-+.- |..++++|.. ++|.-|.|+..+...-+.+.+.| |.+.|..
T Consensus 173 G~i~~~~~~~~--------D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~~g~g~~~P~~ 244 (498)
T 2ja2_A 173 GPVTFAAGSVP--------DFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKF 244 (498)
T ss_dssp EEEEECTTCSC--------CCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCCEE
T ss_pred ceEeecccccC--------cceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHhhcCCCCCCeE
Confidence 45666655544 8888777630 23334999999999999999999 9999998
Q ss_pred cccCcccCCCCCCCCcCCCCCCCcee-cCC---CHHHHHHHHhh
Q 027582 85 IESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK 124 (221)
Q Consensus 85 l~~~~lp~L~g~~~KMSkS~~~s~I~-L~D---~p~~I~~KI~k 124 (221)
.+.+++.+.+| +||||++++.+|. +.+ .|+.|..-+..
T Consensus 245 ~h~plil~~~g--~KLSKR~g~~~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 245 AHLPTVLGEGT--KKLSKRDPQSNLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp EEECCEECSSS--SBCCTTSGGGBHHHHHHHTCCHHHHHHHHHT
T ss_pred EEeeeeECCCC--CcccccCCcccHHHHHhCCCCHHHHHHHHHH
Confidence 88999999988 6999998753332 222 47777766665
No 43
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=95.55 E-value=0.0043 Score=57.20 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=40.2
Q ss_pred cccCCCCchH-HHHHHHHHHHHhCCCCcc-ccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582 56 LIPCAIDQDP-YFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 124 (221)
Q Consensus 56 ~vpvG~DQ~~-h~~laR~ia~~~n~~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k 124 (221)
+..+|.||.. |.++--..+..+|.+.|. ++++.+|.. +| +|||||.+| .|.+.| .++.++--+..
T Consensus 253 i~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~G--~KMSKS~GN-~i~~~dli~~~g~DalR~~ll~ 324 (497)
T 2csx_A 253 LHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-EG--KKMSKTLGN-VVDPYEVVQEYGLDEVRYFLLR 324 (497)
T ss_dssp CEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-SS--SBCCTTTTC-CCCHHHHHHHHCHHHHHHHHHH
T ss_pred EEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-CC--ceeCCcCCC-CCCHHHHHHHCCcHHHHHHHHh
Confidence 5689999987 554433333456775565 445666654 66 799999986 776543 34444444443
No 44
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=95.34 E-value=0.0056 Score=56.36 Aligned_cols=66 Identities=15% Similarity=0.017 Sum_probs=40.0
Q ss_pred cccCCCCchH-HHHHHHHHHHHhCCCCcc-ccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582 56 LIPCAIDQDP-YFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 124 (221)
Q Consensus 56 ~vpvG~DQ~~-h~~laR~ia~~~n~~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k 124 (221)
+..+|.||.. |..+--..+..+|.+.|. ++++.+|..-+| +|||||.+| .|.+.| .++.++--+..
T Consensus 254 i~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G--~KMSKS~GN-~i~p~d~i~~~g~DalR~~ll~ 326 (500)
T 2d5b_A 254 WHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDG--RKMSKTLGN-VVDPFALLEKYGRDALRYYLLR 326 (500)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTS--SCCCTTTTC-CCCHHHHHHHHCHHHHHHHHHH
T ss_pred EEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCCC--CcccccCCC-CCCHHHHHHhcCcHHHHHHHHh
Confidence 5689999987 433322223345776565 455677764366 799999986 776543 34445444443
No 45
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=95.03 E-value=0.0094 Score=55.25 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=53.9
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCcee-cCC---CHHHHHHHHhh
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK 124 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L~D---~p~~I~~KI~k 124 (221)
++|..|.||..|...-..+.+.+|.+.|...|.+++.+.+| +||||++++..|. +.+ .|+.|..-+..
T Consensus 220 thvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G--~KLSKR~g~~~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 220 THVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDG--KKLSKRHGATSVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCGGGSCCBHHHHHHHTCCHHHHHHHHHT
T ss_pred CeEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCC--CcccCcCCcccHHHHHHCCCCHHHHHHHHHH
Confidence 57889999999999999999999999998888888888888 6999998764332 222 46666666655
No 46
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=94.26 E-value=0.0062 Score=56.22 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=38.1
Q ss_pred cccCCCCchHHHHHHHHHHHHhCCCCccc--cccCccc-CCCCCCCCcCCCCCCCceecCC
Q 027582 56 LIPCAIDQDPYFRMTRDVAPRIGYHKPAL--IESSFFP-ALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 56 ~vpvG~DQ~~h~~laR~ia~~~n~~~p~~--l~~~~lp-~L~g~~~KMSkS~~~s~I~L~D 113 (221)
+-.+|.||..|+.--..+++.+|++.+.+ +.+.++. +-+|...|||||.+| .|.+.|
T Consensus 239 Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn-~v~l~d 298 (464)
T 3fnr_A 239 INIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN-FILMSD 298 (464)
T ss_dssp EEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS-SCBHHH
T ss_pred EEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC-CCCHHH
Confidence 33689999999999999999999865532 3345552 225533599999986 777654
No 47
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=93.11 E-value=0.017 Score=53.54 Aligned_cols=53 Identities=19% Similarity=0.126 Sum_probs=32.1
Q ss_pred cccCCCCchHH-HHHHHHHHHHhCCCCcc-ccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582 56 LIPCAIDQDPY-FRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVT 112 (221)
Q Consensus 56 ~vpvG~DQ~~h-~~laR~ia~~~n~~~p~-~l~~~~lp~L~g~~~KMSkS~~~s~I~L~ 112 (221)
+..+|.||... ..+-...+...|.+.|. ++.+.+|.. +| +|||||.+| .|.+.
T Consensus 268 i~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~G--~KMSKS~GN-~v~p~ 322 (524)
T 2x1l_A 268 LHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RG--EKMSKSIGN-VVDPV 322 (524)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-CS--CSEETTTEE-SSCHH
T ss_pred EEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-CC--cccCCcCCC-CCCHH
Confidence 46899999853 22222233345765553 344556554 55 799999986 66653
No 48
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=92.92 E-value=0.029 Score=52.06 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=30.9
Q ss_pred cccCCCCchHHH---HHHHHHHHHhCCCCccccc-cCcccCCCCCCCCcCCCCCCCceec
Q 027582 56 LIPCAIDQDPYF---RMTRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 56 ~vpvG~DQ~~h~---~laR~ia~~~n~~~p~~l~-~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
+...|.||..++ ..++-++. |.+.|..+. +.+|- .+| +|||||.+| .|..
T Consensus 281 ~~~~G~D~~~fh~~~~~a~l~~~--g~~~~~~v~~hg~l~-~~G--~KMSKSlGN-vi~p 334 (542)
T 3u1f_A 281 VHVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWWT-KDR--KKISKSLGN-VFDP 334 (542)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHH--TCCCCSCEEEECCCE-ETT--BCCBTTTTB-CCCH
T ss_pred EEEecccccccccchhHHHHHhh--cccccceecccccee-cCC--ceeccccCC-CCCh
Confidence 457899997753 33444443 555554443 44543 355 899999986 6653
No 49
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=92.88 E-value=0.044 Score=54.53 Aligned_cols=56 Identities=27% Similarity=0.117 Sum_probs=37.0
Q ss_pred cCCCCcccccCCCCch---HHHHHHHHHHHHhCCCCc-cccccCcccCCCCCCCCcCCCCCCCceec
Q 027582 49 GKDHLRCLIPCAIDQD---PYFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~---~h~~laR~ia~~~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
+.+| +...|.||. .|-.+....+ -+|...+ .++.+.++...+| +|||||.+| .|..
T Consensus 547 ~P~D---l~~~G~D~~r~wf~~~l~~s~~-~~g~~Pfk~v~~hG~V~d~~G--~KMSKSlGN-vV~P 606 (917)
T 1ffy_A 547 FPAD---MYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDGEG--KKMSKSLGN-VIVP 606 (917)
T ss_dssp SSBS---EEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECTTS--CCCCSSSSC-CCCH
T ss_pred CCce---EEEEEecccccHHHHHHHHHHH-hhCCCcccceeEeeeEEcCCC--cCcccccCC-cCCh
Confidence 5565 468999997 4556666665 3454222 3445677776666 799999987 6654
No 50
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=92.43 E-value=0.03 Score=52.63 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=33.5
Q ss_pred cccCCCCchHHHH-H--HHHHHHHhCCCCcccc-ccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 56 LIPCAIDQDPYFR-M--TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 56 ~vpvG~DQ~~h~~-l--aR~ia~~~n~~~p~~l-~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
+..+|.||..++. + ++-.+ .|.+.|..+ .+.++ ..+| +|||||.+| .|.+.|
T Consensus 297 v~~~GkDii~FH~~~wpa~L~a--~g~~~~~~v~~hg~v-~~~G--~KMSKS~GN-vV~p~d 352 (564)
T 3kfl_A 297 VHVVGKDILKFHAIYWPAFLMS--AELPLPERLVSHGWW-TKDH--KKISKSLGN-AFDPVE 352 (564)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCE-EETT--EECCTTTTC-CCCHHH
T ss_pred eEEEeecccchHHHHHHHHHHh--CCCCCCcEEEEcccE-eeCC--ccccccCCC-CCCHHH
Confidence 4688999988422 2 34333 466555443 45677 5566 799999986 776533
No 51
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=92.06 E-value=0.026 Score=52.54 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=33.7
Q ss_pred cCCCCchH-H--HHHHHHHH-HHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecC---C--CHHHHHHHHhh
Q 027582 58 PCAIDQDP-Y--FRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT---D--SAKAIKNKINK 124 (221)
Q Consensus 58 pvG~DQ~~-h--~~laR~ia-~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~---D--~p~~I~~KI~k 124 (221)
+.|.|+.. | ......++ .-+|.+.|..+++++|.. .|.++|||||.+| .|.+. + .|+.++--+.+
T Consensus 235 ~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~-~g~g~KmSKs~Gn-~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 235 PAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGI-KGQKGKMSGSKGN-VILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp CEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEE-SCC---------C-CCCHHHHHTTSCHHHHHHHHHS
T ss_pred CCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEe-CCCCCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHh
Confidence 56778766 1 12335555 578887787777787765 3223799999986 44332 2 57777766665
No 52
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=91.77 E-value=0.044 Score=50.35 Aligned_cols=64 Identities=17% Similarity=0.123 Sum_probs=37.4
Q ss_pred cccCCCCch-HHHH--HHHHHHHHhCCCCccc-cccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582 56 LIPCAIDQD-PYFR--MTRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 124 (221)
Q Consensus 56 ~vpvG~DQ~-~h~~--laR~ia~~~n~~~p~~-l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k 124 (221)
+..+|.|+. +|++ .+.-.|- +|.+.|.. +++.+|.- +| +|||||.+| .|.+.| +++.++--+.+
T Consensus 223 ih~gG~Dl~fpH~~~~~aq~~a~-~g~~~~~~~~h~g~v~~-~G--~KMSKS~GN-~v~~~dll~~~g~dalR~~ll~ 295 (461)
T 1li5_A 223 IHGGGSDLMFPHHENEIAQSTCA-HDGQYVNYWMHSGMVMV-DR--EKMSKSLGN-FFTVRDVLKYYDAETVRYFLMS 295 (461)
T ss_dssp EEECBGGGTTTHHHHHHHHHHHH-SSSCCEEEECCBCCEEE-TT--BCCCGGGTC-CCBHHHHHTTSCHHHHHHHHHS
T ss_pred EEeccCccCchHHHHHHHHHHHh-cCCCCCcEEEEeeEEEE-CC--eEccccCCC-ccChhHHhhhCCHHHHHHHHHc
Confidence 457899976 4543 3333322 57655543 45566543 55 799999986 665432 45666554444
No 53
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=91.70 E-value=0.037 Score=51.52 Aligned_cols=52 Identities=19% Similarity=0.080 Sum_probs=23.0
Q ss_pred cccCCCCchHH-H--HHHHHHHHHhCCCCcccc-ccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 56 LIPCAIDQDPY-F--RMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 56 ~vpvG~DQ~~h-~--~laR~ia~~~n~~~p~~l-~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
+...|.||... . -.++-.+ .|.+.|..+ .+.++. ++| +|||||.+| .|.+.|
T Consensus 279 v~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~G--~KMSKS~GN-vi~p~d 334 (536)
T 4dlp_A 279 AHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NRG--EKMSKSVGN-VIDPFE 334 (536)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHHH
T ss_pred eEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eCC--ceecccCCC-CCCHHH
Confidence 46889999884 2 2245444 466555443 356664 466 699999986 776543
No 54
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=91.59 E-value=0.036 Score=50.07 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=22.6
Q ss_pred cccCCCCchH-HHHHHHHHHHHh-CCCCc-ccc-ccCcccCCCCCCCCcCCCCCCCceec
Q 027582 56 LIPCAIDQDP-YFRMTRDVAPRI-GYHKP-ALI-ESSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 56 ~vpvG~DQ~~-h~~laR~ia~~~-n~~~p-~~l-~~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
+..+|.|+.. |++...-...-+ |.+.+ .++ ++.+|. ++| +|||||.+| .|.+
T Consensus 247 i~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G--~KMSKS~GN-~v~~ 302 (414)
T 3c8z_A 247 IQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDG--HKMSKSRGN-LVLV 302 (414)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBH
T ss_pred EEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCC--eEcccccCC-cCCH
Confidence 4678999876 777655555544 65333 233 334554 466 699999986 6665
No 55
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=91.47 E-value=0.029 Score=55.49 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=36.5
Q ss_pred cCCCCcccccCCCCchHHHHHHHHHHHHh---CCCCc--cccccCcccCCCCCCCCcCCCCCCCceecC
Q 027582 49 GKDHLRCLIPCAIDQDPYFRMTRDVAPRI---GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 112 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~h~~laR~ia~~~---n~~~p--~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~ 112 (221)
|.+| +...|.||.. +=.+|.++... |. .| .++.+.++...+| +|||||.+| .|...
T Consensus 480 ~P~d---~~v~G~Dii~-~W~a~~~~~~~~~~g~-~Pfk~v~~hG~vld~~G--~KMSKSlGN-vIdP~ 540 (862)
T 1gax_A 480 YPGD---VLVTGYDILF-LWVSRMEVSGYHFMGE-RPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDPL 540 (862)
T ss_dssp CSBS---CEEEEGGGTT-TTHHHHHHHHHHHSSS-CSBSEEEEECCEECTTS--CBCCTTTTC-CCCHH
T ss_pred CCce---EEecCccccc-cHHHHHHHHHHHhcCC-CcccEEEEeeeEEcCCC--CCccccCCC-CCCHH
Confidence 4554 4688999875 34566665533 33 34 3455678777777 799999986 66543
No 56
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=91.13 E-value=0.53 Score=43.63 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=54.2
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCcee-cC---CCHHHHHHHHhh
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VT---DSAKAIKNKINK 124 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~-L~---D~p~~I~~KI~k 124 (221)
|+|.-|.|....---=..+.+.||.+.|...|.|+|.+-+| +||||.++..+|. +- -.|+.|..-+..
T Consensus 222 ThViRG~D~l~~tprq~~l~~aLG~~~P~f~HlpLi~~~~g--~KLSKR~g~~sl~~~r~~G~~peal~n~l~~ 293 (490)
T 4g6z_A 222 THVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQG--EKMSKRHGAMSVMGYRDAGYLPEAVLNYLAR 293 (490)
T ss_dssp CEEEEEGGGGGGHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCTTTTCCBHHHHHHTTCCHHHHHHHHHT
T ss_pred CEEEeccccccChHHHHHHHHHcCCCCCeEEEecceeCCCC--CcccCCCCCcCHHHHHHCCCCHHHHHHHHHH
Confidence 68899999988777777788899999999989999999887 7999998754442 21 358888887776
No 57
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=90.81 E-value=0.057 Score=50.52 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=36.3
Q ss_pred ccCCCCchHH-HHHHHHHHHHhCCCCcccc-ccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582 57 IPCAIDQDPY-FRMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 124 (221)
Q Consensus 57 vpvG~DQ~~h-~~laR~ia~~~n~~~p~~l-~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k 124 (221)
-.+|.||..+ ..+--.+...+|++.|..+ .+.++.. +| +|||||.+| .|.+.| .++.++--+.+
T Consensus 304 ~~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~-~G--~KMSKS~GN-vv~p~d~i~~~GaDalR~~ll~ 374 (560)
T 3h99_A 304 HFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTV-NG--AKMSKSRGT-FIKASTWLNHFDADSLRYYYTA 374 (560)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEE-TT--EECCTTTTC-CCBHHHHHHHSCHHHHHHHHHH
T ss_pred EEeccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEe-CC--eeccccCCC-cCCHHHHHHHcCcHHHHHHHHH
Confidence 3579999983 2222123333666666433 3455543 66 799999986 676533 24445444444
No 58
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=90.08 E-value=0.12 Score=50.55 Aligned_cols=70 Identities=24% Similarity=0.215 Sum_probs=38.9
Q ss_pred cCCCCcccccCCCCchH-HHHHHHHHHHH-hCCCCc-cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHH
Q 027582 49 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKN 120 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~-h~~laR~ia~~-~n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~ 120 (221)
+.+| +...|.||.. |+......+.- ++.+.+ .++.+.++...+| +|||||.+| .|.+.| .++.++-
T Consensus 543 ~P~d---l~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G--~KMSKS~GN-vV~p~dli~~yGaDalR~ 616 (821)
T 1ile_A 543 FPAD---FIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDPWDIIRKFGADALRW 616 (821)
T ss_dssp SSBS---BEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCHHHHHTTTCHHHHHH
T ss_pred CCcc---cccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCC--CCCCccCCC-CCCHHHHHHHhCHHHHHH
Confidence 4454 3568999973 33222222222 344333 3445677777777 799999986 665432 3555554
Q ss_pred HHhh
Q 027582 121 KINK 124 (221)
Q Consensus 121 KI~k 124 (221)
-+..
T Consensus 617 ~ll~ 620 (821)
T 1ile_A 617 YIYV 620 (821)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
No 59
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.00 E-value=0.054 Score=50.98 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=39.6
Q ss_pred chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCC
Q 027582 29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 106 (221)
Q Consensus 29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~ 106 (221)
.||..+-|.++ |....+. |+|..|.|...+-..=.-+...+|.+.|...|.++| .++| .|||||..+
T Consensus 270 g~PtYhfa~~v-----DD~~~GI---ThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L-~~~g--~KLSKR~~~ 336 (553)
T 3aii_A 270 VYPMMNFSVAV-----DDHLLGV---THVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRL-KMDD--VALSTSGAR 336 (553)
T ss_dssp EEECHHHHHHH-----HHHHTTC---CEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCB-C---------CHHHH
T ss_pred eeeeeeeeeee-----eeccCCC---ceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEE-ecCC--ceechhhhh
Confidence 46776666444 4444554 689999999888766666678899988988888988 5666 699999653
No 60
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=89.98 E-value=0.11 Score=51.98 Aligned_cols=68 Identities=21% Similarity=0.104 Sum_probs=39.6
Q ss_pred cCCCCcccccCCCCchH-HHHHHHHHHHH-hCC-CCc-cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHH
Q 027582 49 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK 119 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~-h~~laR~ia~~-~n~-~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~ 119 (221)
+.+| +...|.||.. |+...+-...- ++. +-| .++++.++.. +| +|||||.+| .|...| .++.++
T Consensus 602 ~P~D---i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~d~i~~yGaDalR 674 (967)
T 1wz2_A 602 YPLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFIDAIEENGADVVR 674 (967)
T ss_dssp CSCS---EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SS--SCCCTTTCC-CCBHHHHHHTTCHHHHH
T ss_pred CCCe---EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CC--EEccccccC-CCCHHHHHHHhChHHHH
Confidence 4565 3579999964 65555433333 332 223 3445666654 56 799999986 666532 455565
Q ss_pred HHHh
Q 027582 120 NKIN 123 (221)
Q Consensus 120 ~KI~ 123 (221)
--+.
T Consensus 675 ~~ll 678 (967)
T 1wz2_A 675 LYIM 678 (967)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 61
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=89.35 E-value=0.11 Score=50.84 Aligned_cols=67 Identities=21% Similarity=0.117 Sum_probs=38.2
Q ss_pred cCCCCcccccCCCCchH-HHHHHHHHHHH-hCC-CCc-cccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHH
Q 027582 49 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK 119 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ~~-h~~laR~ia~~-~n~-~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~ 119 (221)
+.+| +..+|.||.. |+...+-...- ++. +-| .++++.+|.. +| +|||||.+| .|.+.| .++.++
T Consensus 602 ~p~D---i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~dli~~yGaDalR 674 (810)
T 1wkb_A 602 YPLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFIDAIEENGADVVR 674 (810)
T ss_dssp CSCS---EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TT--BCCCTTTTC-CCBHHHHHHHHCHHHHH
T ss_pred CCce---EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CC--eehhhcCCC-cCCHHHHHHHcChHHHH
Confidence 3455 3579999965 65555443332 232 223 3445556553 55 799999986 776543 344444
Q ss_pred HHH
Q 027582 120 NKI 122 (221)
Q Consensus 120 ~KI 122 (221)
--+
T Consensus 675 ~~l 677 (810)
T 1wkb_A 675 LYI 677 (810)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 62
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=87.80 E-value=0.27 Score=45.67 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=45.6
Q ss_pred ccccCCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCC
Q 027582 55 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 106 (221)
Q Consensus 55 ~~vpvG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~ 106 (221)
|+|.-|.|...+--.=.-+.+.||.+.|...|.++|.+-+| +|+||.++.
T Consensus 231 THViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g--~kLSKR~~~ 280 (512)
T 4gri_A 231 THVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDG--QKLSKRHGS 280 (512)
T ss_dssp SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--SBCCTTTSC
T ss_pred ceeccccccccccHHHHHHHHHcCCCCCeEEecchhccccc--cccCccccc
Confidence 68999999999988888899999999999999999999988 799999864
No 63
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=85.04 E-value=0.11 Score=49.15 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=34.8
Q ss_pred ccCCCCchHHHHHHHHHHHHhCCCCc--cc--cccCcccCCCCCCCCcCCCCCCCceecCC
Q 027582 57 IPCAIDQDPYFRMTRDVAPRIGYHKP--AL--IESSFFPALQGETGKMSASDPNSAIYVTD 113 (221)
Q Consensus 57 vpvG~DQ~~h~~laR~ia~~~n~~~p--~~--l~~~~lp~L~g~~~KMSkS~~~s~I~L~D 113 (221)
-.+|.||..|+.-...+++.+|++.+ .. +.+.+|. +.| +|||||.+| .|.+.|
T Consensus 351 yV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~-~~g--~KMSKr~Gn-~v~l~d 407 (592)
T 1iq0_A 351 NVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LEG--RQMSGRKGL-AVSVDE 407 (592)
T ss_dssp EEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ETT--BCSCC-----CCBHHH
T ss_pred EEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEE-cCC--CcccCCCCC-ccCHHH
Confidence 36789999999999999999998542 22 2234554 355 799999986 776543
No 64
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=84.10 E-value=0.19 Score=46.24 Aligned_cols=64 Identities=14% Similarity=0.057 Sum_probs=34.9
Q ss_pred cccCCCCchH-HHHHHHHHHHH---hCCCCccccccCcccCCCCCCCCcCCCCCCCceecCC-----CHHHHHHHHhh
Q 027582 56 LIPCAIDQDP-YFRMTRDVAPR---IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 124 (221)
Q Consensus 56 ~vpvG~DQ~~-h~~laR~ia~~---~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D-----~p~~I~~KI~k 124 (221)
+.-+|.|... |++ +++|.. +|.|-+....+..+...+| +|||||.+| .|.+.| +++.++--+..
T Consensus 226 ih~gG~Dl~FpHhe--neiaqs~a~~g~p~~~~w~H~g~v~~~G--~KMSKSlGN-~i~~~dll~~~g~dalR~~lls 298 (462)
T 3tqo_A 226 IHGGGLDLKFPHHE--NEIAQSEAGEEKPFVKLWMHAGLLEINK--EKMSKSLGN-IISIREALKESDVEVLRYFLLS 298 (462)
T ss_dssp EEEEEGGGTTTHHH--HHHHHHHHHHSSCCEEEEEEECCEEETT--EECCTTTTC-CCBHHHHHHHSCHHHHHHHHHH
T ss_pred EEccccccccHHHH--hHHHHHHHHcCCCcceEEEEccEEecCC--cCccccCCC-cccHHHHHhhcChHHhhhhhcc
Confidence 4577888654 655 444443 3443233333333334577 799999986 665533 35555443333
No 65
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=83.66 E-value=0.47 Score=47.03 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=24.6
Q ss_pred cCCCCcccccCCCCc-hHHHHHHHHHHH---HhCC---CCcc--ccccCccc
Q 027582 49 GKDHLRCLIPCAIDQ-DPYFRMTRDVAP---RIGY---HKPA--LIESSFFP 91 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ-~~h~~laR~ia~---~~n~---~~p~--~l~~~~lp 91 (221)
+.+| +..+|.|| .-|+-.+|-+.+ ..|+ .+|. ++.+.+|-
T Consensus 542 ~PvD---~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl 590 (880)
T 4arc_A 542 LPVD---IYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVL 590 (880)
T ss_dssp CSEE---EEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEE
T ss_pred CCce---EeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEe
Confidence 4554 56899999 568888885533 3343 5663 34456663
No 66
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=82.21 E-value=0.41 Score=45.60 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=39.6
Q ss_pred cccCCCCchHHHHHHHHHHHHhCCCC-cc---ccccCcccCCCCCCCCcCCCCC--CCceecCCC
Q 027582 56 LIPCAIDQDPYFRMTRDVAPRIGYHK-PA---LIESSFFPALQGETGKMSASDP--NSAIYVTDS 114 (221)
Q Consensus 56 ~vpvG~DQ~~h~~laR~ia~~~n~~~-p~---~l~~~~lp~L~g~~~KMSkS~~--~s~I~L~D~ 114 (221)
+-.+|.||..|+.-...++..+|++. +. ++.+.+|- +.| +|||||.+ | .|.+.|=
T Consensus 380 IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~~~--~KMSkr~G~~n-~v~l~dL 440 (629)
T 2zue_A 380 INVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-RPE--GKFSGRKGTWV-GFTVDEV 440 (629)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-BTT--BCCCTTTTTTT-TCBHHHH
T ss_pred EEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-cCC--CcccCCCCCCC-eeeHHHH
Confidence 44679999999999999999999854 32 22234554 344 69999988 7 7776543
No 67
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=80.23 E-value=0.55 Score=44.59 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=40.1
Q ss_pred cccCCCCchHHHHHHHHHHHHhCCCCccc-cccCcccCCCCCCCCcCCCCCCCceecCCCHHHH
Q 027582 56 LIPCAIDQDPYFRMTRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 118 (221)
Q Consensus 56 ~vpvG~DQ~~h~~laR~ia~~~n~~~p~~-l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I 118 (221)
+-.+|.||..|+.-...+++.+|++.+.. .|..+ |+- .||||+.++ .|.|.|=-+++
T Consensus 368 IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~f--g~v---~kMSkR~G~-~v~L~dLlde~ 425 (607)
T 1f7u_A 368 IYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNF--GMV---QGMSTRKGT-VVFLDNILEET 425 (607)
T ss_dssp EEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC--CCE---ESCCGGGTC-CCBHHHHHHHH
T ss_pred EEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecc--ccc---ccccCCCCC-cccHHHHHHHH
Confidence 33599999999999999999999865533 34444 222 379999886 77765433333
No 68
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=78.74 E-value=0.48 Score=45.78 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=37.7
Q ss_pred ccCCCCchHHHHHH--HHHHHHh----------CCCCccc-cccCcccCCCCCCCCcCCCCCCCceecC---C--CHHHH
Q 027582 57 IPCAIDQDPYFRMT--RDVAPRI----------GYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVT---D--SAKAI 118 (221)
Q Consensus 57 vpvG~DQ~~h~~la--R~ia~~~----------n~~~p~~-l~~~~lp~L~g~~~KMSkS~~~s~I~L~---D--~p~~I 118 (221)
-.+|.|+..++.+- -.+ .-. |.+.|.. +++.+|.. +| +|||||.+| .|+.. + .++.+
T Consensus 293 h~~GkDii~fH~~~wpA~l-~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~-~G--~KMSKS~GN-vV~p~d~i~~ygaDal 367 (722)
T 1rqg_A 293 HFIGKDNIPFHAIFWPAFL-MAYGKYKDEEVEAEWNLPYDIPANEYLTL-EG--KKFSTSRNW-AIWVHEFLDVFPADYL 367 (722)
T ss_dssp EEEEGGGHHHHHTHHHHHH-HTTCCBCSSSCCBCBCCCSBCCEECCEEE-TT--EECBTTTTB-SCBHHHHTTTSCHHHH
T ss_pred EEccccccccchhhhHHHH-hccCCCcccccccCCCCCCEEEEeeeEEe-CC--eeeeeeCCC-cCCHHHHHHhcCchHH
Confidence 45799998765432 122 222 2445543 44566654 66 799999986 77643 2 46777
Q ss_pred HHHHhh
Q 027582 119 KNKINK 124 (221)
Q Consensus 119 ~~KI~k 124 (221)
+--+.+
T Consensus 368 R~~ll~ 373 (722)
T 1rqg_A 368 RYYLTT 373 (722)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766665
No 69
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=76.36 E-value=0.64 Score=42.62 Aligned_cols=25 Identities=8% Similarity=-0.083 Sum_probs=10.5
Q ss_pred cccccCC--CCcccccCCCCchHHHHH
Q 027582 45 HLFSGKD--HLRCLIPCAIDQDPYFRM 69 (221)
Q Consensus 45 Dil~~~a--d~~~~vpvG~DQ~~h~~l 69 (221)
||+.... ..+|+||||.||++|.|-
T Consensus 223 Dil~~~~d~~~~~~vp~~~d~~~~~~~ 249 (451)
T 3foc_A 223 PVYSTYFDGLPFTRVPLPVGTGNEDAA 249 (451)
T ss_dssp GGSGGGGTTSGGGCCBCC---------
T ss_pred HHHHhhcCCCCccccccccccccchhh
Confidence 7764322 245899999999999543
No 70
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=75.00 E-value=0.8 Score=45.30 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=24.1
Q ss_pred cCCCCcccccCCCCc-hHHHHHHHHHHH---HhCC---CCc--cccccCcccC
Q 027582 49 GKDHLRCLIPCAIDQ-DPYFRMTRDVAP---RIGY---HKP--ALIESSFFPA 92 (221)
Q Consensus 49 ~~ad~~~~vpvG~DQ-~~h~~laR~ia~---~~n~---~~p--~~l~~~~lp~ 92 (221)
+.+| +...|.|| .-|+-.+|-+.. ..++ .+| .++.+.++.+
T Consensus 530 ~P~D---~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~ 579 (878)
T 2v0c_A 530 MPVD---QYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLA 579 (878)
T ss_dssp CSBS---EEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEE
T ss_pred CCCe---EEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheecceEec
Confidence 4565 57899999 566666665442 2232 455 3344666654
No 71
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=69.32 E-value=1.3 Score=41.11 Aligned_cols=52 Identities=19% Similarity=0.129 Sum_probs=21.5
Q ss_pred cccCCCCc-hHHHHHHHHHHHHh-CCCCc-cccccCcccCCCCCCCCcCCCCCCCceec
Q 027582 56 LIPCAIDQ-DPYFRMTRDVAPRI-GYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 111 (221)
Q Consensus 56 ~vpvG~DQ-~~h~~laR~ia~~~-n~~~p-~~l~~~~lp~L~g~~~KMSkS~~~s~I~L 111 (221)
+-.+|.|. .+|++--.-.+.-. +.+-+ ..+|+.+|. ++| +|||||.+| .|.+
T Consensus 256 IH~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~-~~G--~KMSKSlGN-~it~ 310 (501)
T 3sp1_A 256 IHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLI-MDY--NKMSKSRGN-FITV 310 (501)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEE-CC-------------CCCH
T ss_pred EEeeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEe-eCC--eEccccCCC-cCCH
Confidence 34678885 45766555444433 32222 234446654 466 799999986 5554
No 72
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=67.74 E-value=0.56 Score=44.08 Aligned_cols=56 Identities=20% Similarity=0.041 Sum_probs=39.4
Q ss_pred cccccCCCCcccccCCCCchHHHHHHHHHHHHhCCC-CccccccCcccCCCCCCCCcCCCCCC
Q 027582 45 HLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPN 106 (221)
Q Consensus 45 Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~-~p~~l~~~~lp~L~g~~~KMSkS~~~ 106 (221)
|..+.+. |+|..|.|...|-.+=.-+.+.+|.+ .|...+..+| +++| .|||||+.+
T Consensus 218 DDh~~GI---THviRg~e~~~n~~~q~~l~~alg~~~~P~~~~f~hL-n~~g--~KLSKR~~~ 274 (553)
T 1qtq_A 218 SDALEGI---THSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRL-NLEY--TVMSKRKLN 274 (553)
T ss_dssp HHHHTTC---SEEEEEGGGTTTHHHHHHHHHTSCCSCCCEEEEECCC-CBTT--SCCCHHHHH
T ss_pred EeccCCc---ceEeeccchhhhHHHHHHHHHHcCCCCCCCeEEEEee-cCCC--ccccccccc
Confidence 3434544 68999999988876666667888876 5755555555 6677 699999753
No 73
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=48.36 E-value=1.5 Score=43.15 Aligned_cols=66 Identities=9% Similarity=-0.006 Sum_probs=43.8
Q ss_pred chhhhhccCCCCCCCCcccccCCCCcccccCCCCchHHHHHHHHHHHHhCCCC-ccccccCcccCCCCCCCCcCCCCC
Q 027582 29 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK-PALIESSFFPALQGETGKMSASDP 105 (221)
Q Consensus 29 ~YP~lqaa~~~~~~~~Dil~~~ad~~~~vpvG~DQ~~h~~laR~ia~~~n~~~-p~~l~~~~lp~L~g~~~KMSkS~~ 105 (221)
.||..+-|.++ |..+.+- |+|..|.|...|-.+=.-+.+.+|.+. |...+..+|+ ++| .|||||+.
T Consensus 247 g~PtYhfA~vV-----DD~~~GI---THViRG~D~~~n~~~q~~l~~alG~~~~P~~~~fahLn-~~g--~KLSKR~g 313 (851)
T 2hz7_A 247 IYPAYDFEHPL-----QDAIEGV---THSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRG-LEY--TITSKRKL 313 (851)
T ss_dssp EEECHHHHHHH-----HHHHHTC---SEEEEEGGGTTTHHHHHHHHHHTTCSSCCEEEEECCEE-ETT--CCCCHHHH
T ss_pred cccccceeeEe-----eeccCCc---ceeecchhhhhChHHHHHHHHHcCCCCCCCceEEEEec-CCC--cccccccc
Confidence 36666655333 3334444 689999998877666666678888864 7655555553 566 69999974
No 74
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=41.61 E-value=60 Score=20.19 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 027582 182 QRLAKVLTELVERHQVARAAVTDEMVDAF 210 (221)
Q Consensus 182 ~~lae~l~~~l~pire~~~~~~~~~l~~i 210 (221)
..|+..+..+|.-.+.||....+..+.++
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~ri 33 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRI 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999999999877644443
No 75
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=39.43 E-value=68 Score=27.16 Aligned_cols=55 Identities=9% Similarity=0.219 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582 63 QDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 124 (221)
Q Consensus 63 Q~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k 124 (221)
-.|.+.+-|.+++.+|++- .++..+.+..-+| ..||++ .|+|++..-+..-.+.+
T Consensus 146 d~qq~~~l~~~~~dl~~~v-~iv~~p~vr~~dG--laiSSr----nirLs~~er~~A~~l~~ 200 (276)
T 1v8f_A 146 DYQQLLVVRRMVRDLGFPV-EVVGVPTVREEDG--LALSSR----NVYLSPETRKKAPVLYR 200 (276)
T ss_dssp GHHHHHHHHHHHHHHTCCC-EEEEECCCBCTTS--CBCCGG----GGGCCHHHHHHTTHHHH
T ss_pred CCcCHHHHHHHHHHcCCeE-EEEecCcEEcCCC--CEeEEe----EEEeCHHHHHHHHHHHH
Confidence 7888999999999999732 2222244443355 589998 66777655544444443
No 76
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=38.19 E-value=79 Score=26.81 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=38.0
Q ss_pred CCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582 59 CAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 124 (221)
Q Consensus 59 vG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k 124 (221)
-|..-.|.+.+-|.+++.+|++-- ++..+.+.--+| ..||++ .+||++..-+..-.|.+
T Consensus 146 FG~kd~qq~~~l~~~~~dl~~~v~-iv~vp~vr~~dG--laiSSr----n~yLs~~er~~A~~l~~ 204 (280)
T 2ejc_A 146 FGQKDAQQFRVLRRMVRDLNMDVE-MIECPIVREPDG--LAMSSR----NVYLSPEERQQALSLYQ 204 (280)
T ss_dssp EEGGGHHHHHHHHHHHHHTTCCCE-EEEECCCBCTTS--CBCCGG----GGGCCHHHHHHTHHHHH
T ss_pred eCCCCCcCHHHHHHHHHHcCCeEE-EEeeCcEEcCCC--CEeccC----cccCCHHHHHHHHHHHH
Confidence 355677888999999999997322 112344433455 589998 67777666555555544
No 77
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=37.22 E-value=1e+02 Score=26.22 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=38.0
Q ss_pred CCCCchHHHHHHHHHHHHhCCCCccccccCcccCCCCCCCCcCCCCCCCceecCCCHHHHHHHHhh
Q 027582 59 CAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 124 (221)
Q Consensus 59 vG~DQ~~h~~laR~ia~~~n~~~p~~l~~~~lp~L~g~~~KMSkS~~~s~I~L~D~p~~I~~KI~k 124 (221)
.|..-.|.+.+-|.+++.+|++-- ++..+.+.--+| -.||++ .+||++..-+..-.|.+
T Consensus 147 FG~Kd~qql~~l~~m~~dl~~~V~-iv~vp~vr~~dG--laiSSr----n~yLs~~eR~~A~~l~~ 205 (283)
T 3ag6_A 147 FGKKDAQQLAIVEQMVKDFNHAVE-IIGIDIVREADG--LAKSSR----NVYLTEQERQEAVHLSK 205 (283)
T ss_dssp EEGGGHHHHHHHHHHHHHTTCCCE-EEEECCCBCTTS--CBCCGG----GGGCCHHHHHHTHHHHH
T ss_pred ECCCCccCHHHHHHHHHHcCCeEE-EEecCcEEeCCC--CEecCC----ccccCHHHHHHHHHHHH
Confidence 355678888999999999997322 112333333345 589998 67777666555544444
No 78
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=33.49 E-value=1.1e+02 Score=23.02 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=29.0
Q ss_pred HHHhhhcCChHhHHHHHHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHHH
Q 027582 151 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 200 (221)
Q Consensus 151 ~~l~~~~~~~~~~eel~~~y~~g~~~~~~lK~~lae~l~~~l~pire~~~ 200 (221)
.+++|+ ++++-++|.+.+.+|+ +-.++.+.+-+.....-...++...
T Consensus 16 ~~LsWL--t~eQk~EI~kMk~~gk-sk~~v~~KI~efye~l~gd~K~~a~ 62 (134)
T 2xv9_A 16 THLKWL--SQEQKDELLKMKKDGK-AKKELEAKILHYYDELEGDAKKEAT 62 (134)
T ss_dssp TTTTTS--CHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHC--CHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcccHHHHHHH
Confidence 477787 5677788888887774 5555555555555444444444443
Done!