RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027582
(221 letters)
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 276 bits (706), Expect = 4e-92
Identities = 134/220 (60%), Positives = 170/220 (77%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCA
Sbjct: 204 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 263
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK
Sbjct: 264 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 323
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 324 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 383
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 220
K+ L +VL L+ HQ R VTDE+V FM R L F
Sbjct: 384 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 276 bits (707), Expect = 9e-92
Identities = 133/220 (60%), Positives = 169/220 (76%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCA
Sbjct: 251 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 310
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK
Sbjct: 311 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 370
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 371 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 430
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 220
K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 431 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAAAL 470
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 270 bits (691), Expect = 6e-90
Identities = 109/216 (50%), Positives = 146/216 (67%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+V+V++ +T + +FGF D IGK F +Q +FPSSFP++ D CLIPCA
Sbjct: 197 VVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCA 256
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+ K I+
Sbjct: 257 IDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQK 316
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
KINKYAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y +G +L+GE+
Sbjct: 317 KINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEM 376
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ + L E V+ Q RA V +E +D FM L
Sbjct: 377 KKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 267 bits (684), Expect = 2e-89
Identities = 108/214 (50%), Positives = 152/214 (71%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
++++ K ++ +++ IFGF ++GK +FP VQA P+F SSFPH+F G+ + CL+P A
Sbjct: 168 ILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHA 227
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFRM RDVAPR+GY KP+ I S F P+LQG KMSAS NS+I+V D+ ++I+N
Sbjct: 228 IDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRN 287
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
KI KYAFSGGQ + E R+LGANL+VD+ +YL F +EDD +LE I K+Y +G ML+GE+
Sbjct: 288 KIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEI 347
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 214
K L + L +L + HQ R A+ D+++ F
Sbjct: 348 KSILVQELVKLTKNHQKNREAINDDVIAKFTNKS 381
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 265 bits (679), Expect = 1e-88
Identities = 76/217 (35%), Positives = 119/217 (54%), Gaps = 12/217 (5%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+ +AK + ++ +FGFT + IG + FP +Q P+F CLIP A
Sbjct: 165 AIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFFERKR----------CLIPAA 214
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPY+R+ RD A +GY+K A + S F P+L +GKMSAS P +AIY+TDS + ++
Sbjct: 215 IDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEK 274
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGE 179
K+ K+ +GG+ +++ R+ G E + K+L FF EDD +L+ G + GE
Sbjct: 275 KVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGE 334
Query: 180 VKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ L + E ++ HQ R +++V+ F L
Sbjct: 335 CKRYLISKIQEFLKEHQ-RRRKKAEKLVEKFKYTGKL 370
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 256 bits (655), Expect = 7e-85
Identities = 89/216 (41%), Positives = 138/216 (63%), Gaps = 3/216 (1%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
++K++K + N+ + +FGF +IG+V FP + P F SSF + G CL+P A
Sbjct: 194 ILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAA 250
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
+DQDP+FR+ RD A +G KP+ I S P L+G KMSASDPNS+IY+ D+ I+
Sbjct: 251 VDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRK 310
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
KI YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE + Y G + + E+
Sbjct: 311 KIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEM 370
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K++ V+ E V R+Q +R VTD+ + AF+ +
Sbjct: 371 KEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 250 bits (639), Expect = 1e-82
Identities = 58/216 (26%), Positives = 114/216 (52%), Gaps = 3/216 (1%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+ V K YN V F F D+IGK++ P + F S+ H FS RCL+ +
Sbjct: 174 ISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDS 231
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
I + + +A + + +P ++ P L G K +++I ++D+AK ++
Sbjct: 232 IKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVER 290
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
KINK AFSGG+ + E H+KLG ++D+ + L+ F D+A+++ ++++Y G +L+GE+
Sbjct: 291 KINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGEL 350
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ ++ + + + + + +T + A+++
Sbjct: 351 KKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTKF 386
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 248 bits (634), Expect = 7e-82
Identities = 112/217 (51%), Positives = 152/217 (70%), Gaps = 2/217 (0%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS-GKDHLRCLIPC 59
+ K+ + T ++V G FGF ED+ G+ FP +QA PSF ++FPH+F ++ CLIP
Sbjct: 171 VAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQ 230
Query: 60 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 119
AIDQDPYFR+TRD+APR+GY KPA+I S FFP L G GKMS+S A+ +TD+ K +K
Sbjct: 231 AIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGT-AVLLTDTEKMVK 289
Query: 120 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGE 179
+KINK+AFSGG + + H LGAN+EVD+P+++LSFFLEDD EL +KKEY G ++TGE
Sbjct: 290 DKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGE 349
Query: 180 VKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
VK+ L +T + + HQ R VTDE V F + R +
Sbjct: 350 VKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIM 386
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 224 bits (571), Expect = 9e-72
Identities = 97/264 (36%), Positives = 138/264 (52%), Gaps = 48/264 (18%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH-------- 52
V + + +++ FGF+ + ++G +FPP Q +P + + F L +
Sbjct: 187 SCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNE 246
Query: 53 ----------------------------------------LRCLIPCAIDQDPYFRMTRD 72
CLI I+QDPYFR+ RD
Sbjct: 247 DAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARD 306
Query: 73 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 132
+APR+G+ K A + F P LQG KMSASDPNSAIY+TD+ IKNKIN+YAFSGG++
Sbjct: 307 LAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKNKINRYAFSGGRD 366
Query: 133 SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 192
+ E HR GA+L VD+ V+YL F++DDAELE +K +Y G +LTGEVK L +L L+
Sbjct: 367 TEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLI 426
Query: 193 ERHQVARAAVTDEMVDAFMAVRPL 216
+ H R V M+++F + L
Sbjct: 427 KEHAERRDKVDTTMIESFTVKKEL 450
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 170 bits (433), Expect = 4e-52
Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 21/220 (9%)
Query: 1 MVKVAKCVTYNKV---VGIFGFTGEDHI--GKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 55
M+ +A+ T ++V I G D + ++ +P +QA F
Sbjct: 137 MLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFELVPEG--------ID 188
Query: 56 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 115
+ IDQ + + A G P + +L G KMS SDP AI++ D+
Sbjct: 189 ICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDTE 248
Query: 116 KAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGM 175
+ + KI++ + + + L+ + ++E I++++ M
Sbjct: 249 QEVSEKISRAYCTDETF--DNPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDF--SSM 304
Query: 176 LTGEVKQRLAKVLTELV----ERHQVARAAVTDEMVDAFM 211
E+K +A + ++ E + + V ++
Sbjct: 305 NKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQ 344
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 92.2 bits (229), Expect = 4e-22
Identities = 49/239 (20%), Positives = 85/239 (35%), Gaps = 37/239 (15%)
Query: 1 MVKVAKCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 56
+ +++ V+ N + + +P +QA+ L
Sbjct: 137 IFRLSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQALDEQ------------FLDVD 184
Query: 57 IPCA-IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 115
+DQ F + + P +GY K A + + P L GKMSASDPNS I + +
Sbjct: 185 CQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQG-GKMSASDPNSKIDLLEEP 243
Query: 116 KAIKNKINKYAFSGGQ-------ESVELHRKLGANLEVDIPVKYLSFFLEDD-------- 160
K +K KIN S G V+ + E+ + FF++
Sbjct: 244 KQVKKKINSAFCSPGNVEENGLLSFVQYV--IAPIQELKFGTNHFEFFIDRPEKFGGPIT 301
Query: 161 -AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 218
E +K + + ++K +A + EL+E + A E +A P+
Sbjct: 302 YKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFAN-NKEFQEASEKGYPVAT 359
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 86.4 bits (214), Expect = 3e-20
Identities = 38/180 (21%), Positives = 69/180 (38%), Gaps = 20/180 (11%)
Query: 22 EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRIGYH 80
E++ ++ +P +Q F L + IDQ + R+
Sbjct: 180 ENYCSQILYPCMQCADIF------------FLNVDICQLGIDQRKVNMLAREYCDIKKIK 227
Query: 81 KPALIES-SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK-YAFSGGQE-----S 133
K +I S P L KMS SD NSAI++ DS + KI K Y E +
Sbjct: 228 KKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDVNRKIKKAYCPPNVIENNPIYA 287
Query: 134 VELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
+ E ++ K + + L+ ++ +Y G + ++K +A + +L++
Sbjct: 288 YAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAMYINKLLQ 347
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 84.9 bits (210), Expect = 2e-19
Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 61 IDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 119
+DQ + R+ IG KP ++ L+ KMS SDP+SAI++ D+ + +
Sbjct: 191 LDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVA 250
Query: 120 NKINKYAF-------SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL--------- 163
KI + A+ + V + + + A
Sbjct: 251 RKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATY 309
Query: 164 EHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
E +++ + + + +K L + L+E
Sbjct: 310 EDLEQAFVSDEVSEDALKSCLIDEVNALLE 339
Score = 77.6 bits (191), Expect = 9e-17
Identities = 20/145 (13%), Positives = 44/145 (30%), Gaps = 12/145 (8%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 115
+ R+ PAL + + +Y+ D+
Sbjct: 523 HVISTSLDGHINAFAREYTKERI--DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDND 580
Query: 116 KAIKNKINKYAFSGGQES----VELHRKL---GANLEVDIPVKYLSFFLEDDAELEHIKK 168
I+ KI K A+S E + + + L L ++ E +
Sbjct: 581 MDIRRKIKK-AYSAPNEEANPVISVAQHLLAQHGALSIERGEANGGNV--SYNTPEALVA 637
Query: 169 EYGAGGMLTGEVKQRLAKVLTELVE 193
+ G+G + ++K + ++L +
Sbjct: 638 DCGSGALHPADLKAAVLQLLLDRSA 662
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 82.2 bits (203), Expect = 1e-18
Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 38/173 (21%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIGYH---------KPALIESSFFPALQGE---------- 96
+ +DQ + +VA ++ YH KP + LQ
Sbjct: 183 IAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEE 242
Query: 97 ------TGKMSASDPNSAIYVTDSAKAIKNKINKYAF--------SGGQESVE--LHRKL 140
KMS S P SA+++ DS + I+ K+ K AF + + VE + R+
Sbjct: 243 FKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAREVRYNPVLDWVEYIIFREE 301
Query: 141 GANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
V P K+ E +K+++ G + ++K +A+ L L+E
Sbjct: 302 PTEFTVHRPAKFGG--DVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLE 352
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 76.3 bits (188), Expect = 1e-16
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 26/157 (16%)
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------------ETGKMSASDP 105
+DQ + RDVA ++G KP I + +LQG KMS S P
Sbjct: 185 MDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244
Query: 106 NSAIYVTDSAKAIKNKINKYAFSGGQ-------ESVELH--RKLGANLEVDIPVKYLSFF 156
+A++V DS I+ KI K Q E + G L VD P KY
Sbjct: 245 ETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGP- 303
Query: 157 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
+ E ++++Y G + ++K +A+ L E+V
Sbjct: 304 -VEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVR 339
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 72.2 bits (178), Expect = 3e-15
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 16/141 (11%)
Query: 62 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 113
DQ P TR++ R + L P L G KMS S N AI + D
Sbjct: 171 DQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGD 228
Query: 114 SAKAIKNKINK-YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 172
SA + K+ Y G + + R G + +L F D A ++ +K +Y A
Sbjct: 229 SADEVARKVMGMYTDPGHLRASDPGRVEGNPV-----FTFLDAFDPDPARVQALKDQYRA 283
Query: 173 GGMLTGEVKQRLAKVLTELVE 193
GG+ +VK+ L VL ++
Sbjct: 284 GGLGDVKVKKHLIDVLNGVLA 304
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 68.7 bits (169), Expect = 6e-14
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 15/140 (10%)
Query: 62 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 113
DQ + +TR++A R Y + L P G KMS S N I +
Sbjct: 162 DQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGR--KMSKSYGN-IINLEI 218
Query: 114 SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAG 173
S K ++ I + + + + R N E KY F + E + + +
Sbjct: 219 SEKELEQTILR-MMT---DPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTA 274
Query: 174 GMLTGEVKQRLAKVLTELVE 193
+ + K+ L K + +
Sbjct: 275 SIGCVDCKKLLLKNMKRKLA 294
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 66.3 bits (162), Expect = 4e-13
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 12/142 (8%)
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQ F P +GY K + + P L G KMS+S+ S I + D + +K
Sbjct: 186 IDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKK 243
Query: 121 KINKYAFSGGQES-------VELH-RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 172
K+ K G ++ L + + K+ ++K++ A
Sbjct: 244 KLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTA--YVDLEKDFAA 301
Query: 173 GGMLTGEVKQRLAKVLTELVER 194
+ G++K + L +L++
Sbjct: 302 EVVHPGDLKNSVEVALNKLLDP 323
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 61.0 bits (149), Expect = 2e-11
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 62 DQDPYFRMTRDVAPRIGYH------KP-ALIESSF--FPALQGETGKMSASDPNSAIYVT 112
DQ + +TR++A R + +P AL+ P + G KMS S N I +
Sbjct: 150 DQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLL 207
Query: 113 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 172
+ ++I KI + + + E I YLS+F +E +K+EY
Sbjct: 208 EPEESIWQKIQH-LPD---DPQRIRLSDPGDPERTILFTYLSYF-APKDLVEALKEEYRK 262
Query: 173 GGMLTGEVKQRLAKVLTELVE 193
G+ T VK+ L L E +
Sbjct: 263 AGVGTYVVKRILFDHLMEALR 283
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 60.8 bits (148), Expect = 3e-11
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQ + R+ PR+GY P + + L G KMS+S + I V D + ++
Sbjct: 178 IDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPPEEVER 234
Query: 121 KINKYAFSGGQ----------ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 170
KI K G + L R + V+ K+ + A E + +++
Sbjct: 235 KIRKAYCPAGVVEENPILDIAKYHILPRF--GKIVVERDAKFGGDV--EYASFEELAEDF 290
Query: 171 GAGGMLTGEVKQRLAKVLTELVE 193
+G + ++K +AK L L+E
Sbjct: 291 KSGQLHPLDLKIAVAKYLNMLLE 313
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 56.5 bits (137), Expect = 8e-10
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 13/138 (9%)
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
++Q + R++ P+ K I + L GE GKMS+S N I V DS + I+
Sbjct: 171 MEQRKIHMLARELLPK----KVVCIHNPVLTGLDGE-GKMSSSKGN-FIAVDDSPEEIRA 224
Query: 121 KINK-YAFSGGQES--VELHRK--LGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGM 175
KI K Y +G E + K L L + P K+ E ++ + +
Sbjct: 225 KIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGD--LTVNSYEELESLFKNKEL 282
Query: 176 LTGEVKQRLAKVLTELVE 193
+K +A+ L +++E
Sbjct: 283 HPMYLKNAVAEELIKILE 300
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 51.4 bits (124), Expect = 4e-08
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 19/141 (13%)
Query: 62 DQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPNSAIYVT 112
DQ + + RD+A ++ P A + E + G KMS S N I +
Sbjct: 148 DQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGA--KMSKSYQN-TIDIF 204
Query: 113 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 172
S K +K +I+ + + N+ K FL D++ + ++ Y
Sbjct: 205 SSEKTLKKQISS-IVTDSTALEDPKDHENCNI-----FKIAKLFL-DESGQKELQIRYEK 257
Query: 173 GGMLTGEVKQRLAKVLTELVE 193
GG G K L +++ +
Sbjct: 258 GGEGYGHFKIYLNELVNAYFK 278
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 47.6 bits (114), Expect = 8e-07
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 93 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEV 146
LQ T KMS SD N + I + + K++ KI + + ++ +K G NL +
Sbjct: 201 LQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNL-L 259
Query: 147 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
DI LS + ++ ++ G + G +K +A ++ ++
Sbjct: 260 DI----LSGV--TGQSIPELEAQF--TGQMYGHLKGAVADAVSGMLS 298
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 47.6 bits (114), Expect = 1e-06
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 30/158 (18%)
Query: 56 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP--------------ALQGETGKMS 101
+P DQ + + RD+A R ++ E F +LQ T KMS
Sbjct: 146 QVPVGSDQKQHLELARDIATR--FNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMS 203
Query: 102 ASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEVDIPVKYLSF 155
SD N + I + + K+I KINK A + + + ++ K G NL + + S
Sbjct: 204 KSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVENKAGIANL-MGL----YSA 258
Query: 156 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
I+ +Y AG + G K+ + + + ++E
Sbjct: 259 A--TGKTFAEIEAQY-AGVEMYGPFKKDVGEAVVAMLE 293
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 47.3 bits (113), Expect = 1e-06
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 93 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 147
L KMS SDPN + I + D K ++ KI A S G + K G NL +
Sbjct: 220 LNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVKFDKENKPGVSNL-LT 277
Query: 148 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
I S + +E ++ +Y G GE K LA+V+ ++
Sbjct: 278 I----YSIL--GNTTIEELEAKY--EGKGYGEFKGDLAEVVVNALK 315
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 47.1 bits (113), Expect = 1e-06
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 93 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 147
L T KMS SDPN + I + D AK I+ KI A S G + K G NL ++
Sbjct: 186 LVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIRYDKEAKPGISNL-LN 243
Query: 148 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
I S +E ++++Y G G K LA+V+ E +
Sbjct: 244 I----YSTL--SGQSIEELERQY--EGKGYGVFKADLAQVVIETLR 281
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 46.1 bits (110), Expect = 3e-06
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 20/113 (17%)
Query: 93 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 147
L T KMS S N IY+ D + + KI + A S + + G N+ +
Sbjct: 196 LFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIRFASKTQPGVTNM-LT 253
Query: 148 IPVKYLSFF-------LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 193
I L + ++ + ++K L + L+
Sbjct: 254 I----LKALLKEPVNQSLTNQLGNDLEAYF--STKSYLDLKNALTEATVNLLV 300
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 1e-05
Identities = 36/195 (18%), Positives = 64/195 (32%), Gaps = 58/195 (29%)
Query: 14 VGIF-GFTG----EDHIGKVSFPPV--QAVPSFPSSFPHLFSGKD-HLRCLIPCAIDQDP 65
VG F G+ +G F V + F + + G D H L
Sbjct: 61 VGKFLGYVSSLVEPSKVG--QFDQVLNLCLTEFENCY---LEGNDIH--ALA-------- 105
Query: 66 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKY 125
++ ++ + K LI++ + A + NSA++ + ++
Sbjct: 106 -AKLLQENDTTLVKTK-ELIKN-YITARI-MAKRPFDKKSNSALF--RAVGEGNAQL--V 157
Query: 126 A-FSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRL 184
A F GGQ G + Y EL + + Y L G++ +
Sbjct: 158 AIF-GGQ---------GNTDD------YFE-------ELRDLYQTYHV---LVGDLIKFS 191
Query: 185 AKVLTELVERHQVAR 199
A+ L+EL+ A
Sbjct: 192 AETLSELIRTTLDAE 206
Score = 42.7 bits (100), Expect = 5e-05
Identities = 39/225 (17%), Positives = 66/225 (29%), Gaps = 71/225 (31%)
Query: 9 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF--------PHLFSGKDHLRCLIPCA 60
TY+ +VG + + ++ + A F P KD+L IP +
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-LSIPIS 237
Query: 61 IDQDP---------YFRMTRDVAPRIGYHKPALIESSFFPALQGETGK---------MSA 102
P Y + +G+ P L+G TG ++
Sbjct: 238 C---PLIGVIQLAHYVVTAK----LLGFT-PG----ELRSYLKGATGHSQGLVTAVAIAE 285
Query: 103 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAE 162
+D + + KAI F G E + P L + +D+
Sbjct: 286 TDSWESFF-VSVRKAI-----TVLFFIGVRCYEAY-----------PNTSLPPSILEDSL 328
Query: 163 LEHIKKEYGAGG---ML--TG----EVKQRLAKVLTELVERHQVA 198
E G ML + +V+ + K + L QV
Sbjct: 329 ------ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.008
Identities = 34/253 (13%), Positives = 71/253 (28%), Gaps = 67/253 (26%)
Query: 31 PPVQAVPSFPSSFPH-----------LFSGKDHLRCLIPCAID--QDP----YF----RM 69
P + S+ L K + CL+ + Q+ F ++
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKI 268
Query: 70 ---TRD--VAPRIG---YHKPALIESS--FFP----ALQGETGKMSASD-PNSAI----- 109
TR V + +L S P +L + D P +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 110 -------YVTDSAKAIKN--KINKYAFSGGQE-SVE-----LHRKLGANL-----EVDIP 149
+ D N +N + E S+ +RK+ L IP
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 150 VKYLSFFLEDD--AELEHIKKEYGAGGMLTGEVKQRLAKV--LTELVERHQVARAAVTDE 205
LS D +++ + + ++ + K+ + + ++ A+
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 206 MVDAFMAVRPLPN 218
+VD + + +
Sbjct: 449 IVDHYNIPKTFDS 461
Score = 34.1 bits (77), Expect = 0.038
Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 40/131 (30%)
Query: 52 HLRCL----IPCAIDQ--------DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGK 99
H + IP D D YF IG+H E
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYF------YSHIGHH--------LKNIEHPERMT 491
Query: 100 MSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED 159
+ +++ + ++ KI + + L N + Y + ++
Sbjct: 492 LF-----RMVFLDF--RFLEQKIRHDSTAWNASGSIL------NTLQQLK-FYKPYICDN 537
Query: 160 DAELEHIKKEY 170
D + E +
Sbjct: 538 DPKYERLVNAI 548
Score = 27.1 bits (59), Expect = 5.6
Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 11/120 (9%)
Query: 110 YVTDSAKAI-KNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAE------ 162
V D K+I + + R L + + F+E+
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-LL-SKQEEMVQKFVEEVLRINYKFL 94
Query: 163 LEHIKKEYGAGGMLTGEVKQRLAKVLT--ELVERHQVARAAVTDEMVDAFMAVRPLPNMF 220
+ IK E M+T ++ ++ ++ ++ V+R ++ A + +RP N+
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.65
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 13/37 (35%)
Query: 99 KMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVE 135
K+ AS +Y DSA A+ I ++E
Sbjct: 24 KLQAS---LKLYADDSAPAL--AIKA--------TME 47
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 28.9 bits (65), Expect = 1.3
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 103 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGAN 143
+ I+ + I + A + E++E R GA+
Sbjct: 80 ESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGAD 120
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour
suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Length = 104
Score = 26.8 bits (59), Expect = 2.8
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 158 EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH 195
E A L+ I++ Y G+ K +LA E+V++H
Sbjct: 59 EKLALLKQIQEAY-GKCKEFGDDKVQLAMQTYEMVDKH 95
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel, TIM barrel,
oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP:
c.1.16.3
Length = 349
Score = 27.8 bits (62), Expect = 3.4
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 184 LAKVLTELV--ERHQVARAAVTDEMVDAFMAV 213
A+ + E + A V ++M++AF
Sbjct: 270 KAEQIAEAIGKGDFGTAIGLVDEDMIEAFSIA 301
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair,
HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2
PDB: 1h7u_A* 1ea6_A*
Length = 365
Score = 26.8 bits (60), Expect = 6.1
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 178 GEVKQRLAKVLTELVE 193
G+V L+ + ELVE
Sbjct: 29 GQVVLSLSTAVKELVE 44
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.1.16.3
Length = 321
Score = 26.6 bits (59), Expect = 6.2
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 180 VKQRLAKVLTELV--ERHQVARAAVTDEMVDAFMAV 213
+ K EL+ A AV D +++AF V
Sbjct: 241 LPADTGKKFGELLGKGDFGGAIGAVDDALMEAFSVV 276
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA
damage, nucleus, phosphop DNA binding protein, protein
binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Length = 367
Score = 26.8 bits (60), Expect = 6.2
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 178 GEVKQRLAKVLTELVE 193
G+V L + ELV+
Sbjct: 20 GQVITDLTTAVKELVD 35
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)-
methylenetetrahydromethanopterin reductase; (alpha,
beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A
{Methanosarcina barkeri}
Length = 327
Score = 26.6 bits (59), Expect = 6.5
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 193 ERHQVARAAVTDEMVDAFMAV 213
+ + VT +M++AF
Sbjct: 262 DFGALMGGLVTPQMIEAFSIC 282
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
biosynthesis, condensatio domain, peptide bond
formation, ligase; 1.85A {Brevibacillus brevis}
Length = 520
Score = 26.7 bits (60), Expect = 6.7
Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 176 LTGEV-KQRLAKVLTELVERHQVAR 199
+ G++ + R+ L+ RH+ R
Sbjct: 127 IEGKLERTRVEAAFQRLIARHESLR 151
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 26.6 bits (59), Expect = 7.7
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 102 ASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV 146
+ I+ + I + A + E++E R GA+ +
Sbjct: 185 LESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVI 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.402
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,448,751
Number of extensions: 207691
Number of successful extensions: 692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 53
Length of query: 221
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,188,903
Effective search space: 548746293
Effective search space used: 548746293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)