RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027582
(221 letters)
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 177 bits (449), Expect = 1e-54
Identities = 133/216 (61%), Positives = 169/216 (78%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCA
Sbjct: 170 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 229
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK
Sbjct: 230 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 289
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 180
K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 290 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 349
Query: 181 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 216
K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 350 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 385
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 80.0 bits (196), Expect = 2e-18
Identities = 32/202 (15%), Positives = 67/202 (33%), Gaps = 19/202 (9%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 60
V + + + + + +P +QA+
Sbjct: 134 SSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKV-----------DAQFGG 182
Query: 61 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 120
IDQ F P +GY K + + P L KMS+S+ S I + D + +K
Sbjct: 183 IDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLT--GSKMSSSEEESKIDLLDRKEDVKK 240
Query: 121 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE------DDAELEHIKKEYGAGG 174
K+ K G ++ + +++ E ++K++ A
Sbjct: 241 KLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEV 300
Query: 175 MLTGEVKQRLAKVLTELVERHQ 196
+ G++K + L +L++ +
Sbjct: 301 VHPGDLKNSVEVALNKLLDPIR 322
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
stearothermophilus, nca 1503 [TaxId: 1422]}
Length = 319
Score = 67.8 bits (165), Expect = 3e-14
Identities = 24/204 (11%), Positives = 56/204 (27%), Gaps = 19/204 (9%)
Query: 1 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPV-QAVPSFPSSFPHLFSGKDHLRCLIPC 59
+ + K + ++ + + S+ + F
Sbjct: 130 LDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLRLYETEGCRLQ 189
Query: 60 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 119
D + +T + A P + G + I++
Sbjct: 190 IGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKEKT--- 246
Query: 120 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAELEHIKKEYGAGGMLTG 178
S + N + ++YL +F E+E +++E
Sbjct: 247 -------------SPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKR- 292
Query: 179 EVKQRLAKVLTELVERHQVARAAV 202
++ LA+ +T+LV + R A+
Sbjct: 293 AAQKTLAEEVTKLVHGEEALRQAI 316
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 63.5 bits (153), Expect = 1e-12
Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 14/159 (8%)
Query: 44 PHLFSGKDHLRCL-IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 102
+ +L ++Q + R+ + K I + L GE +
Sbjct: 153 IMQVNDIHYLGVDVAVGGMEQRKIHMLARE----LLPKKVVCIHNPVLTGLDGE--GKMS 206
Query: 103 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRK-----LGANLEVDIPVKYLSFFL 157
S + I V DS + I+ KI K G + L L + P K+
Sbjct: 207 SSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDL- 265
Query: 158 EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 196
E ++ + + ++K +A+ L +++E +
Sbjct: 266 -TVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIR 303
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 60.5 bits (146), Expect = 1e-11
Identities = 24/203 (11%), Positives = 60/203 (29%), Gaps = 19/203 (9%)
Query: 1 MVKVAKCVTYNKVVGIFGFTG-EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 59
+ ++ Y K VG+ G + ++ ++ F +
Sbjct: 130 ISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGHLNRELNCKIQ 189
Query: 60 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 119
D + +T + + P + GK + A+++
Sbjct: 190 VGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDAE----- 244
Query: 120 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAELEHIKKEYGAGGMLTG 178
+ S + N + +K+L +F E++ +++ L
Sbjct: 245 -----------KTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLR- 292
Query: 179 EVKQRLAKVLTELVERHQVARAA 201
E ++ LA+ +T+ + A
Sbjct: 293 EAQKTLAEEVTKFIHGEDALNDA 315
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain
{Thermotoga maritima [TaxId: 2336]}
Length = 105
Score = 26.0 bits (57), Expect = 1.7
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 158 EDDAELEHIKKEY----GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM-A 212
ED + + G G + +L L ++++ + + +T +++D
Sbjct: 33 EDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFAG 92
Query: 213 VRPLPNMFD 221
V + M D
Sbjct: 93 VDMITRMVD 101
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus
aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}
Length = 96
Score = 25.8 bits (57), Expect = 1.8
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 175 MLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 210
MLTG+ K+ L + + Q+ + + + M+
Sbjct: 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQI 36
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 26.7 bits (58), Expect = 2.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 178 GEVKQRLAKVLTELVE 193
G+V L+ + ELVE
Sbjct: 1 GQVVLSLSTAVKELVE 16
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396,
C-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 81
Score = 25.1 bits (55), Expect = 2.5
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 180 VKQRLAKVLTELVERHQV 197
V+ RLA+ L L E
Sbjct: 2 VRGRLAETLLILKENFGF 19
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 80
Score = 24.7 bits (54), Expect = 3.2
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 179 EVKQRLAKVLTELVERHQVA 198
++KQR+A +
Sbjct: 1 DIKQRIAGFFIDHANTTGRQ 20
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 24.7 bits (54), Expect = 3.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 174 GMLTGEVKQRLAKVLTELVERH 195
L + K LA +T+++ RH
Sbjct: 10 RELDEQQKAALAADITDVIIRH 31
>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497
{Methanosarcina mazei [TaxId: 2209]}
Length = 208
Score = 25.7 bits (56), Expect = 4.0
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 178 GEVKQRLAKVLTELVERHQVARAAVTD 204
K RL+ VL+ ER + +
Sbjct: 10 AGAKSRLSPVLSL-QEREEFVELMLNQ 35
>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda
constant domain, CL-lambda {Hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 104
Score = 25.0 bits (54), Expect = 4.7
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 39 FPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 72
FP S L + K L CL+ +
Sbjct: 11 FPPSPEELRTNKATLVCLVNDFYPGSATVTWKAN 44
>d1j3wa_ d.110.7.1 (A:) Giding protein MglB {Thermus thermophilus
[TaxId: 274]}
Length = 134
Score = 24.8 bits (54), Expect = 5.3
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 176 LTGEVKQRLAKVLTELVERHQVARAAVTD 204
L G +R +VL E + A + D
Sbjct: 3 LYGAPYERAVEVLEETLRETGARYALLID 31
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 218
Score = 25.5 bits (55), Expect = 5.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 178 GEVKQRLAKVLTELVE 193
GEV +R A V+ ELVE
Sbjct: 19 GEVVERPASVVKELVE 34
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 110
Score = 24.1 bits (52), Expect = 8.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 143 NLEVDIPVKYLSFFLE 158
N+EVD KY +E
Sbjct: 89 NVEVDQIGKYTEKLVE 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.402
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 821,420
Number of extensions: 37737
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 20
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)