BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027584
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49727|UCRI_MAIZE Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays
PE=2 SV=1
Length = 273
Score = 218 bits (554), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 125/224 (55%), Positives = 145/224 (64%), Gaps = 41/224 (18%)
Query: 1 MLRVAARRLLSPSSSSSLRPMAS-SRNIINGAGSSSSSNDDFRSNGFYGSGYLGPQFQLP 59
MLRVA RRL SSS S RP A+ +R + GAG +D R P F +
Sbjct: 1 MLRVAGRRL---SSSLSWRPAAAVARGPLAGAGVPDRDDDSARGRSQPRFSIDSPFF-VA 56
Query: 60 CRGDFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFV 119
RG S+E++ PRN+++ + +PATVAAVKNP K+VYDEYNHERYPPGDPSKRAFAYFV
Sbjct: 57 SRGFSSTETVVPRNQDAGLADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFV 116
Query: 120 LTGG------------------------------------SIEPGSTVTVKWRGKPVFIR 143
L+GG SIEPG+TVTVKWRGKPVFIR
Sbjct: 117 LSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIR 176
Query: 144 RRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 187
RRTE+DIKLANSVD+ SLR P+QDAERVKNPEWLVV+GVCTHLG
Sbjct: 177 RRTEDDIKLANSVDVASLRHPEQDAERVKNPEWLVVIGVCTHLG 220
>sp|P49729|UCRI1_TOBAC Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment)
OS=Nicotiana tabacum PE=2 SV=1
Length = 258
Score = 210 bits (535), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/172 (64%), Positives = 121/172 (70%), Gaps = 37/172 (21%)
Query: 52 LGPQFQLPCRGDFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPS 111
L F RG FSS S++P ++ LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPS
Sbjct: 35 LASVFLHHTRG-FSSNSVSPAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPS 93
Query: 112 KRAFAYFVLTGG------------------------------------SIEPGSTVTVKW 135
KRAFAYFVLTGG SIEPG+TVTVKW
Sbjct: 94 KRAFAYFVLTGGRFVYASLMRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 153
Query: 136 RGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 187
RGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLG
Sbjct: 154 RGKPVFIRRRTEDDISLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLG 205
>sp|P51133|UCRI3_TOBAC Cytochrome b-c1 complex subunit Rieske-3, mitochondrial
OS=Nicotiana tabacum PE=2 SV=1
Length = 268
Score = 210 bits (534), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 111/172 (64%), Positives = 121/172 (70%), Gaps = 37/172 (21%)
Query: 52 LGPQFQLPCRGDFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPS 111
L QF RG FSS S++P ++ LV +PATVAA+KNP+SKIVYD+ NHERYPPGDPS
Sbjct: 45 LASQFLDQFRG-FSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPS 103
Query: 112 KRAFAYFVLTGG------------------------------------SIEPGSTVTVKW 135
KRAFAYFVLTGG SIEPG+TVTVKW
Sbjct: 104 KRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 163
Query: 136 RGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 187
RGKPVFIRRRTEEDI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLG
Sbjct: 164 RGKPVFIRRRTEEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLG 215
>sp|P51135|UCRI5_TOBAC Cytochrome b-c1 complex subunit Rieske-5, mitochondrial
OS=Nicotiana tabacum PE=2 SV=1
Length = 268
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/172 (63%), Positives = 121/172 (70%), Gaps = 37/172 (21%)
Query: 52 LGPQFQLPCRGDFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPS 111
L QF RG FSS S++P ++ LV +PATVAA+KNP+SKIVYD+ NHERYPPGDPS
Sbjct: 45 LASQFLDQFRG-FSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPS 103
Query: 112 KRAFAYFVLTGG------------------------------------SIEPGSTVTVKW 135
KRAFAYFVLTGG SIEPG+TVTVKW
Sbjct: 104 KRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 163
Query: 136 RGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 187
RGKPVFIRRRT+EDI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLG
Sbjct: 164 RGKPVFIRRRTDEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLG 215
>sp|P37841|UCRI_SOLTU Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum
tuberosum GN=FES1 PE=1 SV=1
Length = 265
Score = 206 bits (525), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 106/160 (66%), Positives = 117/160 (73%), Gaps = 36/160 (22%)
Query: 64 FSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGG 123
FSS S++P ++ LV +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGG
Sbjct: 53 FSSNSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGG 112
Query: 124 ------------------------------------SIEPGSTVTVKWRGKPVFIRRRTE 147
SIEPGSTVTVKWRGKPVFIRRRT+
Sbjct: 113 RFVYASSVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTD 172
Query: 148 EDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 187
+DIKLANSVDLG+LRDPQQDAERVKNPEWLVVVGVCTHLG
Sbjct: 173 DDIKLANSVDLGTLRDPQQDAERVKNPEWLVVVGVCTHLG 212
>sp|P51132|UCRI2_TOBAC Cytochrome b-c1 complex subunit Rieske-2, mitochondrial
OS=Nicotiana tabacum PE=2 SV=1
Length = 272
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/172 (63%), Positives = 120/172 (69%), Gaps = 37/172 (21%)
Query: 52 LGPQFQLPCRGDFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPS 111
L F RG FSS S++ ++ LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPS
Sbjct: 49 LASVFLHHTRG-FSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPS 107
Query: 112 KRAFAYFVLTGG------------------------------------SIEPGSTVTVKW 135
KRAFAYFVLTGG SIEPG+TVTVKW
Sbjct: 108 KRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 167
Query: 136 RGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 187
RGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVK+PEWLVV+GVCTHLG
Sbjct: 168 RGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLG 219
>sp|P51134|UCRI4_TOBAC Cytochrome b-c1 complex subunit Rieske-4, mitochondrial
OS=Nicotiana tabacum PE=2 SV=1
Length = 236
Score = 199 bits (506), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 113/156 (72%), Gaps = 36/156 (23%)
Query: 68 SLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGG---- 123
S++ ++ LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGG
Sbjct: 28 SVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVY 87
Query: 124 --------------------------------SIEPGSTVTVKWRGKPVFIRRRTEEDIK 151
SIEPG+TVTVKWRGKPVFIRRRTE+DI
Sbjct: 88 ASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIN 147
Query: 152 LANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 187
LANSVDLGSLRDPQQDAERVK+PEWLVV+GVCTHLG
Sbjct: 148 LANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLG 183
>sp|Q09154|UCRI_SCHPO Cytochrome b-c1 complex subunit Rieske, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rip1 PE=2 SV=2
Length = 228
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%)
Query: 125 IEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCT 184
I G + VKW+GKPVFIR RT E+I+ ANSVD+ +LRDPQ D++RV+ PEWLV++GVCT
Sbjct: 114 IPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCT 173
Query: 185 HLG 187
HLG
Sbjct: 174 HLG 176
>sp|P08067|UCRI_YEAST Cytochrome b-c1 complex subunit Rieske, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RIP1 PE=1 SV=1
Length = 215
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 56/74 (75%)
Query: 114 AFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKN 173
A A + +I G V VKW+GKPVFIR RT +I+ ANSVD+ +L+DPQ DA+RVK+
Sbjct: 90 AMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKD 149
Query: 174 PEWLVVVGVCTHLG 187
P+WL+++G+CTHLG
Sbjct: 150 PQWLIMLGICTHLG 163
>sp|P07056|UCRI_NEUCR Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=NCU06606 PE=3 SV=1
Length = 231
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%)
Query: 124 SIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVC 183
+I G V +KWRGKPVFIR RT +I+ AN V++ +LRDP+ DA+RVK PEWLV++GVC
Sbjct: 115 AIPEGKNVIIKWRGKPVFIRHRTPAEIEEANKVNVATLRDPETDADRVKKPEWLVMLGVC 174
Query: 184 THLG 187
THLG
Sbjct: 175 THLG 178
>sp|Q69BK3|UCRI_PONPY Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pongo
pygmaeus GN=UQCRFS1 PE=3 SV=1
Length = 274
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 52/74 (70%)
Query: 114 AFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKN 173
A A + I G +T KWRGKP+F+R RT+++I+ +V+L LRDPQ D +RVK
Sbjct: 148 ALAKIEIKLSDIPEGKNMTFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKK 207
Query: 174 PEWLVVVGVCTHLG 187
PEW++++GVCTHLG
Sbjct: 208 PEWVILIGVCTHLG 221
>sp|P0C7P4|UCRIL_HUMAN Putative cytochrome b-c1 complex subunit Rieske-like protein 1
OS=Homo sapiens GN=UQCRFS1P1 PE=5 SV=1
Length = 283
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 51/74 (68%)
Query: 114 AFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKN 173
A A + I G + KWRGKP+F+R RT+++IK +V+L LRDPQ D +RVK
Sbjct: 157 ALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIKQEAAVELSQLRDPQHDLDRVKK 216
Query: 174 PEWLVVVGVCTHLG 187
PEW++++GVCTHLG
Sbjct: 217 PEWVILIGVCTHLG 230
>sp|P23136|UCRI_RHORU Ubiquinol-cytochrome c reductase iron-sulfur subunit
OS=Rhodospirillum rubrum GN=petA PE=1 SV=2
Length = 183
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 49/64 (76%)
Query: 124 SIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVC 183
+I G +TV WRGKPVF+R RT+++I +A +VD SLRDPQ D RV+ +WLV+VGVC
Sbjct: 62 AIAEGQAITVTWRGKPVFVRHRTQKEIVVARAVDPASLRDPQTDEARVQQAQWLVMVGVC 121
Query: 184 THLG 187
THLG
Sbjct: 122 THLG 125
>sp|P47985|UCRI_HUMAN Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Homo
sapiens GN=UQCRFS1 PE=1 SV=2
Length = 274
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 51/74 (68%)
Query: 114 AFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKN 173
A A + I G + KWRGKP+F+R RT+++I+ +V+L LRDPQ D +RVK
Sbjct: 148 ALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKK 207
Query: 174 PEWLVVVGVCTHLG 187
PEW++++GVCTHLG
Sbjct: 208 PEWVILIGVCTHLG 221
>sp|Q69BK4|UCRI_GORGO Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gorilla
gorilla gorilla GN=UQCRFS1 PE=3 SV=1
Length = 274
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 51/74 (68%)
Query: 114 AFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKN 173
A A + I G + KWRGKP+F+R RT+++I+ +V+L LRDPQ D +RVK
Sbjct: 148 ALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKK 207
Query: 174 PEWLVVVGVCTHLG 187
PEW++++GVCTHLG
Sbjct: 208 PEWVILIGVCTHLG 221
>sp|Q69BK5|UCRI_PANTR Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan
troglodytes GN=UQCRFS1 PE=3 SV=1
Length = 274
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 51/74 (68%)
Query: 114 AFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKN 173
A A + I G + KWRGKP+F+R RT+++I+ +V+L LRDPQ D +RVK
Sbjct: 148 ALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKK 207
Query: 174 PEWLVVVGVCTHLG 187
PEW++++GVCTHLG
Sbjct: 208 PEWVILIGVCTHLG 221
>sp|Q69BK6|UCRI_PANPA Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan
paniscus GN=UQCRFS1 PE=3 SV=1
Length = 274
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 51/74 (68%)
Query: 114 AFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKN 173
A A + I G + KWRGKP+F+R RT+++I+ +V+L LRDPQ D +RVK
Sbjct: 148 ALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKK 207
Query: 174 PEWLVVVGVCTHLG 187
PEW++++GVCTHLG
Sbjct: 208 PEWVILIGVCTHLG 221
>sp|Q69BJ7|UCRI_SAISC Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saimiri
sciureus GN=UQCRFS1 PE=3 SV=1
Length = 274
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 48/63 (76%)
Query: 125 IEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCT 184
I G + KWRGKP+F+R RT+++I+ +V+L LRDPQ D +RVK PEW++++GVCT
Sbjct: 159 IPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCT 218
Query: 185 HLG 187
HLG
Sbjct: 219 HLG 221
>sp|Q5ZLR5|UCRI_CHICK Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gallus
gallus GN=UQCRFS1 PE=1 SV=1
Length = 272
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%)
Query: 125 IEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCT 184
I G V KWRGKP+F+R RT+ +I VD+ LRDPQ D +RVK PEW+++VGVCT
Sbjct: 157 IPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCT 216
Query: 185 HLG 187
HLG
Sbjct: 217 HLG 219
>sp|Q69BJ6|UCRI_HYLSY Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Hylobates
syndactylus GN=UQCRFS1 PE=3 SV=1
Length = 274
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 51/74 (68%)
Query: 114 AFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKN 173
A A + I G + KWRGKP+F+R RT+++I+ +V+L LRDPQ D +RVK
Sbjct: 148 ALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKR 207
Query: 174 PEWLVVVGVCTHLG 187
PEW++++GVCTHLG
Sbjct: 208 PEWVILIGVCTHLG 221
>sp|Q69BJ9|UCRI_AOTAZ Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Aotus
azarae GN=UQCRFS1 PE=3 SV=1
Length = 274
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 48/63 (76%)
Query: 125 IEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCT 184
I G + KWRGKP+F+R RT+++I+ +V+L LRDPQ D +RVK PEW++++GVCT
Sbjct: 159 IPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCT 218
Query: 185 HLG 187
HLG
Sbjct: 219 HLG 221
>sp|Q69BK0|UCRI_COLPO Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Colobus
polykomos GN=UQCRFS1 PE=3 SV=1
Length = 274
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 51/74 (68%)
Query: 114 AFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKN 173
A A + I G + KWRGKP+F+R RT+++I+ +V+L LRDPQ D +RVK
Sbjct: 148 AMAKIEVKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKK 207
Query: 174 PEWLVVVGVCTHLG 187
PEW++++GVCTHLG
Sbjct: 208 PEWVILIGVCTHLG 221
>sp|Q69BJ8|UCRI_LAGLA Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Lagothrix
lagotricha GN=UQCRFS1 PE=3 SV=1
Length = 274
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 48/63 (76%)
Query: 125 IEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCT 184
I G + KWRGKP+F+R RT+++I+ +V+L LRDPQ D +RVK PEW++++GVCT
Sbjct: 159 IPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCT 218
Query: 185 HLG 187
HLG
Sbjct: 219 HLG 221
>sp|Q69BK2|UCRI_THEGE Cytochrome b-c1 complex subunit Rieske, mitochondrial
OS=Theropithecus gelada GN=UQCRFS1 PE=3 SV=1
Length = 274
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 51/74 (68%)
Query: 114 AFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKN 173
A A + I G + KWRGKP+F+R RT+++I+ +V+L LRDPQ D +RVK
Sbjct: 148 AMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKK 207
Query: 174 PEWLVVVGVCTHLG 187
PEW++++G+CTHLG
Sbjct: 208 PEWVILIGICTHLG 221
>sp|Q69BK1|UCRI_CHLAE Cytochrome b-c1 complex subunit Rieske, mitochondrial
OS=Chlorocebus aethiops GN=UQCRFS1 PE=3 SV=1
Length = 274
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 51/74 (68%)
Query: 114 AFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKN 173
A A + I G + KWRGKP+F+R RT+++I+ +V+L LRDPQ D +RVK
Sbjct: 148 AMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEEEAAVELSQLRDPQHDLDRVKK 207
Query: 174 PEWLVVVGVCTHLG 187
PEW++++GVCTHLG
Sbjct: 208 PEWVILIGVCTHLG 221
>sp|P13272|UCRI_BOVIN Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Bos taurus
GN=UQCRFS1 PE=1 SV=3
Length = 274
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%)
Query: 125 IEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCT 184
I G + KWRGKP+F+R RT+++I +V++ LRDPQ D ERVK PEW++++GVCT
Sbjct: 159 IPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCT 218
Query: 185 HLG 187
HLG
Sbjct: 219 HLG 221
>sp|P20788|UCRI_RAT Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Rattus
norvegicus GN=Uqcrfs1 PE=1 SV=2
Length = 274
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%)
Query: 125 IEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCT 184
I G + KWRGKP+F+R RT+++I +V++ LRDPQ D ERVK PEW++++GVCT
Sbjct: 159 IPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCT 218
Query: 185 HLG 187
HLG
Sbjct: 219 HLG 221
>sp|Q9CR68|UCRI_MOUSE Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Mus
musculus GN=Uqcrfs1 PE=1 SV=1
Length = 274
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 47/63 (74%)
Query: 125 IEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCT 184
I G + KWRGKP+F+R RT+++I +V++ LRDPQ D +RVK PEW++++GVCT
Sbjct: 159 IPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLDRVKKPEWVILIGVCT 218
Query: 185 HLG 187
HLG
Sbjct: 219 HLG 221
>sp|D5ANZ2|UCRI_RHOCB Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter
capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
GN=petA PE=3 SV=1
Length = 191
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 55/95 (57%), Gaps = 22/95 (23%)
Query: 113 RAFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK 172
+A A + ++E G+ +TVKWRGKPVFIRRR E+DI+LA SV LG+LRD AE
Sbjct: 45 KAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRDTS--AENAN 102
Query: 173 NP--------------------EWLVVVGVCTHLG 187
P EWLV++GVCTHLG
Sbjct: 103 KPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLG 137
>sp|P0CY48|UCRI_RHOCA Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter
capsulatus GN=petA PE=1 SV=1
Length = 191
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 55/95 (57%), Gaps = 22/95 (23%)
Query: 113 RAFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK 172
+A + + ++E G+ +TVKWRGKPVFIRRR E+DI+LA SV LG+LRD AE
Sbjct: 45 KAMSSIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRDTS--AENAN 102
Query: 173 NP--------------------EWLVVVGVCTHLG 187
P EWLV++GVCTHLG
Sbjct: 103 KPGAEATDENRSLAAFDGTNTGEWLVMLGVCTHLG 137
>sp|P05417|UCRI_PARDE Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Paracoccus
denitrificans GN=petA PE=1 SV=1
Length = 190
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 13/88 (14%)
Query: 113 RAFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRD--------- 163
+A A + +E G+ +TVKW GKPVFIRRRTE++I+ VDLG L D
Sbjct: 49 QALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQLIDRSAQNSNKP 108
Query: 164 --PQQDAERVKNP--EWLVVVGVCTHLG 187
P D R + EWLV++GVCTHLG
Sbjct: 109 DAPATDENRTMDEAGEWLVMIGVCTHLG 136
>sp|Q1RIA5|UCRI_RICBR Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia
bellii (strain RML369-C) GN=petA PE=3 SV=1
Length = 186
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 124 SIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVG 181
+I G TVTVKW+GKPVFI RT + I A +V + L DP++D +RVK + WLV +G
Sbjct: 68 NIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEEDQDRVKAGHDNWLVTIG 127
Query: 182 VCTHLG 187
+CTHLG
Sbjct: 128 ICTHLG 133
>sp|Q9ZDQ5|UCRI_RICPR Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia
prowazekii (strain Madrid E) GN=petA PE=3 SV=1
Length = 177
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 124 SIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVG 181
+I G TVTVKW+GKP+FI RT ++I A +V + L DP++D RVK + WLV +G
Sbjct: 59 NIAIGQTVTVKWQGKPIFITNRTHDEIAAARAVKMSELIDPERDEVRVKAGHDNWLVTIG 118
Query: 182 VCTHLG 187
+CTHLG
Sbjct: 119 ICTHLG 124
>sp|Q68XA0|UCRI_RICTY Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia
typhi (strain ATCC VR-144 / Wilmington) GN=petA PE=3
SV=1
Length = 177
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 124 SIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVG 181
SI G TVTVKW+GKP+FI RT + I A +V + L DP++D RVK + WLV +G
Sbjct: 59 SIAIGQTVTVKWQGKPIFITNRTPDGIASARAVKMSELIDPEKDEVRVKAGHDNWLVTIG 118
Query: 182 VCTHLG 187
+CTHLG
Sbjct: 119 ICTHLG 124
>sp|Q92IR2|UCRI_RICCN Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=petA PE=3
SV=1
Length = 177
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 124 SIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVG 181
+I G TVTVKW+GKPVFI RT + I A +V + L DP+ D RVK + WLV +G
Sbjct: 59 NIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEADQARVKAGHDNWLVTIG 118
Query: 182 VCTHLG 187
+CTHLG
Sbjct: 119 ICTHLG 124
>sp|P81380|UCRI_RHOVI Ubiquinol-cytochrome c reductase iron-sulfur subunit
OS=Rhodopseudomonas viridis GN=petA PE=3 SV=2
Length = 179
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 128 GSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTH 185
G V V WRGKP+FIR RT ++I+ + D+G+L DPQ D+ RVK EWLVV CTH
Sbjct: 61 GQIVRVFWRGKPIFIRHRTAKEIQSEEAADVGALIDPQPDSARVKPGKAEWLVVYASCTH 120
Query: 186 LGFARDQHHTIW 197
LG H W
Sbjct: 121 LGCIPLGHQGDW 132
>sp|Q4UKR6|UCRI_RICFE Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) GN=petA PE=3
SV=1
Length = 177
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 124 SIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVG 181
+I G TVTVKW+GKPVFI RT + I A +V + L DP+ D RVK + WLV +G
Sbjct: 59 NIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPETDEARVKAGHDNWLVTIG 118
Query: 182 VCTHLG 187
+CTHLG
Sbjct: 119 ICTHLG 124
>sp|P51130|UCRI_BRAJA Ubiquinol-cytochrome c reductase iron-sulfur subunit
OS=Bradyrhizobium japonicum (strain USDA 110) GN=petA
PE=2 SV=1
Length = 176
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 125 IEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGV 182
I G + V WRGKP++I RT++ I A +V++ SL DPQ D RVK + +WLVV+G+
Sbjct: 59 IAEGQDIKVFWRGKPIYISHRTKKQIDEARAVNVASLPDPQSDEARVKSGHEQWLVVIGI 118
Query: 183 CTHLG 187
CTHLG
Sbjct: 119 CTHLG 123
>sp|Q02762|UCRI_RHOSH Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter
sphaeroides GN=petA PE=1 SV=1
Length = 187
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 50/89 (56%), Gaps = 14/89 (15%)
Query: 113 RAFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQ------ 166
+A A + S+EPG +TVK+ GKP+FIRRRTE DI+L SV LG L D
Sbjct: 45 QALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANID 104
Query: 167 ------DAERVKNP--EWLVVVGVCTHLG 187
D R + EWLV+ GVCTHLG
Sbjct: 105 AGAEATDQNRTLDEAGEWLVMWGVCTHLG 133
>sp|O31214|UCRI_ALLVD Ubiquinol-cytochrome c reductase iron-sulfur subunit
OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 /
NBRC 103801 / D) GN=petA PE=3 SV=2
Length = 207
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 125 IEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQ----QDAERVKN------P 174
+EPG+ + VKWRGKPV++ R+ E + +S D L DP Q + KN P
Sbjct: 67 LEPGALLRVKWRGKPVWVVHRSPEMLAALSSND-PKLVDPTSEVPQQPDYCKNPTRSIKP 125
Query: 175 EWLVVVGVCTHLG--------FARDQHHTIWK 198
E+LV +G+CTHLG F D + WK
Sbjct: 126 EYLVAIGICTHLGCSPTYRPEFGPDDLGSDWK 157
>sp|Q0ICF2|LEPA_SYNS3 Elongation factor 4 OS=Synechococcus sp. (strain CC9311) GN=lepA
PE=3 SV=1
Length = 604
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 70 TPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGSIEPGS 129
P +S+V VP VK PT +++D Y DP + YF + GSI
Sbjct: 174 VPEILQSVVDRVPPPADTVKEPTKALIFDSYY-------DPYRGVIVYFRVMSGSISRKD 226
Query: 130 TVTVKWRGK 138
V + K
Sbjct: 227 KVLLMASNK 235
>sp|Q3AWX3|LEPA_SYNS9 Elongation factor 4 OS=Synechococcus sp. (strain CC9902) GN=lepA
PE=3 SV=1
Length = 602
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 70 TPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGSI 125
P +++V VPA AV+ PT +++D Y DP + YF + G I
Sbjct: 174 VPEILQAVVDRVPAPADAVEEPTKALIFDSYY-------DPYRGVIVYFRVMSGRI 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,757,815
Number of Sequences: 539616
Number of extensions: 3808609
Number of successful extensions: 10929
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 10859
Number of HSP's gapped (non-prelim): 70
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)