Query 027584
Match_columns 221
No_of_seqs 160 out of 693
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 20:36:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pp9_E Ubiquinol-cytochrome C 99.9 7.4E-28 2.5E-32 202.7 3.4 113 72-194 1-150 (196)
2 3cx5_E Cytochrome B-C1 complex 99.9 5.2E-26 1.8E-30 189.2 3.8 71 124-194 70-140 (185)
3 2nwf_A Ubiquinol-cytochrome C 99.9 6.8E-24 2.3E-28 170.2 8.9 76 117-192 3-92 (141)
4 2qjy_C Ubiquinol-cytochrome C 99.8 6.9E-19 2.4E-23 146.3 10.0 76 117-192 49-138 (187)
5 1rie_A Rieske iron-sulfur prot 99.7 3.2E-17 1.1E-21 128.2 8.6 76 118-193 7-82 (129)
6 1nyk_A Rieske iron-sulfur prot 99.2 9.2E-13 3.1E-17 107.9 -2.6 69 120-191 25-95 (165)
7 1jm1_A Rieske iron-sulfur prot 98.5 1.4E-09 4.6E-14 92.1 -6.6 71 118-192 14-103 (204)
8 1g8k_B Arsenite oxidase; molyb 97.6 3.4E-05 1.2E-09 60.2 3.6 54 122-192 14-69 (133)
9 1vf5_D Rieske iron-sulfur prot 97.5 1.5E-05 5E-10 65.1 0.7 47 124-194 72-119 (179)
10 1fqt_A Rieske-type ferredoxin 97.4 0.00033 1.1E-08 52.2 6.7 42 121-189 11-52 (112)
11 3gce_A Ferredoxin component of 97.4 0.00031 1.1E-08 53.5 6.4 45 120-191 15-59 (121)
12 2qpz_A Naphthalene 1,2-dioxyge 97.4 0.00052 1.8E-08 50.2 7.0 44 121-191 9-52 (103)
13 3dqy_A Toluene 1,2-dioxygenase 97.3 0.00028 9.6E-09 52.0 5.1 45 120-191 6-50 (106)
14 1vm9_A Toluene-4-monooxygenase 97.1 0.001 3.5E-08 49.3 6.2 44 121-190 7-51 (111)
15 2de6_D Ferredoxin component of 97.1 0.0012 4.1E-08 49.7 6.4 45 120-192 9-54 (115)
16 4aay_B AROB; oxidoreductase, r 97.0 0.00032 1.1E-08 57.9 3.3 56 121-193 56-113 (175)
17 2i7f_A Ferredoxin component of 97.0 0.00077 2.6E-08 49.7 4.4 44 121-192 9-53 (108)
18 2jo6_A Nitrite reductase [NAD( 96.5 0.009 3.1E-07 44.3 7.3 48 120-193 11-59 (113)
19 3c0d_A Putative nitrite reduct 96.3 0.0073 2.5E-07 45.6 5.8 46 121-192 11-56 (119)
20 2jza_A Nitrite reductase [NAD( 96.0 0.015 5E-07 44.8 6.2 48 121-193 9-56 (130)
21 3d89_A Rieske domain-containin 94.7 0.017 5.9E-07 45.5 2.9 51 113-192 15-65 (157)
22 1rfs_A Rieske protein; iron-su 94.5 0.038 1.3E-06 43.5 4.5 43 124-192 31-76 (139)
23 2de6_A Terminal oxygenase comp 92.1 0.29 1E-05 43.5 6.6 50 113-190 27-76 (392)
24 3gcf_A Terminal oxygenase comp 92.0 0.26 8.7E-06 45.7 6.3 49 116-191 35-83 (394)
25 2zyl_A Possible oxidoreductase 91.8 0.34 1.2E-05 43.3 6.8 51 113-190 24-74 (386)
26 1z01_A 2-OXO-1,2-dihydroquinol 91.7 0.36 1.2E-05 43.9 6.9 50 113-190 42-91 (446)
27 3gke_A DDMC; rieske cluster, n 91.6 0.37 1.3E-05 42.4 6.7 47 117-190 10-56 (349)
28 3gkq_A Terminal oxygenase comp 91.3 0.37 1.3E-05 44.6 6.6 50 113-190 30-79 (389)
29 3n0q_A Putative aromatic-ring 90.6 0.64 2.2E-05 42.4 7.4 52 113-191 40-92 (409)
30 4aiv_A Probable nitrite reduct 89.8 0.8 2.8E-05 34.8 6.3 44 121-190 15-59 (119)
31 3vca_A Ring-hydroxylating diox 89.5 0.69 2.4E-05 42.2 6.7 52 113-191 42-94 (412)
32 2gbw_A Biphenyl 2,3-dioxygenas 89.5 0.73 2.5E-05 41.8 6.8 50 113-189 36-86 (454)
33 2bmo_A Oxygenase-alpha NBDO; n 89.2 0.81 2.8E-05 41.3 6.9 50 113-189 35-85 (447)
34 2b1x_A Naphthalene dioxygenase 89.1 0.96 3.3E-05 41.3 7.4 50 113-189 44-94 (470)
35 1uli_A Biphenyl dioxygenase la 85.9 1.7 5.7E-05 39.7 6.9 52 113-192 54-106 (460)
36 3azc_A Cytochrome B6-F complex 85.7 0.16 5.5E-06 40.1 0.0 18 176-193 54-71 (133)
37 3gzx_A Biphenyl dioxygenase su 83.0 2.5 8.6E-05 39.2 6.8 52 113-191 56-108 (457)
38 2d7e_A Primosomal protein N'; 38.4 28 0.00097 25.5 3.5 28 112-139 13-40 (105)
39 2laq_A Accessory gland-specifi 27.5 40 0.0014 21.9 2.3 21 189-210 14-36 (36)
40 3dlm_A Histone-lysine N-methyl 23.6 44 0.0015 28.9 2.6 15 124-138 158-172 (213)
41 1t62_A Conserved hypothetical 23.1 27 0.00094 28.8 1.2 22 126-147 67-89 (166)
42 1nba_A N-carbamoylsarcosine am 22.9 31 0.0011 29.3 1.5 20 170-190 160-179 (264)
No 1
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.94 E-value=7.4e-28 Score=202.71 Aligned_cols=113 Identities=36% Similarity=0.725 Sum_probs=100.7
Q ss_pred cccCCCCCCchhh-hhhhcCCCccccccCCCcccCCCCCCCCcceeEEEeccC---------------------------
Q 027584 72 RNEESLVPGVPAT-VAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGG--------------------------- 123 (221)
Q Consensus 72 ~~~~~~~~~~p~~-~~~~k~Pt~~~~y~~~~~~~~~~~~~~kr~f~y~~~~~~--------------------------- 123 (221)
+|||+.+|||..| +..++||+.+ ..+.+.+||.|+|+++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a 70 (196)
T 1pp9_E 1 SHTDIKVPDFSDYRRPEVLDSTKS----------SKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLA 70 (196)
T ss_dssp CGGGCCCCCCTTTBCGGGCCTTSC----------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHC
T ss_pred CCCCcCCCCchHhhcccccCcccc----------cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccc
Confidence 5999999999999 6789999855 2234567999999876521
Q ss_pred ---------CCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccCCCC
Q 027584 124 ---------SIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARDQHH 194 (221)
Q Consensus 124 ---------~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~~~~ 194 (221)
.|+||+.++|+|+||||||+|||++||+.++++++++|+||+++..|+.+++|++++++||||||+|.+..
T Consensus 71 ~~~v~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~ 150 (196)
T 1pp9_E 71 MSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 150 (196)
T ss_dssp CCCEEEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred ccccEEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999997653
No 2
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.92 E-value=5.2e-26 Score=189.22 Aligned_cols=71 Identities=55% Similarity=1.023 Sum_probs=68.5
Q ss_pred CCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccCCCC
Q 027584 124 SIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARDQHH 194 (221)
Q Consensus 124 ~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~~~~ 194 (221)
.|+||+.++|+|+||||||+|||++||+.++++++++|+||+++.+|+.+++|++++++||||||+|++..
T Consensus 70 ~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~~~ 140 (185)
T 3cx5_E 70 AIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEA 140 (185)
T ss_dssp GCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEEE
T ss_pred HCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceeccCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999998754
No 3
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.90 E-value=6.8e-24 Score=170.19 Aligned_cols=76 Identities=51% Similarity=0.825 Sum_probs=70.9
Q ss_pred EEEeccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCc------------ccccccC--CCcEEEEEcc
Q 027584 117 YFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQ------------QDAERVK--NPEWLVVVGV 182 (221)
Q Consensus 117 y~~~~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPq------------sd~~Rs~--~PEwLVvIGI 182 (221)
.+.+..++|+|||+++|+||||||||+|||++||+.+++++++.|+||+ .+..|++ +.+|+++.++
T Consensus 3 ~~~vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~ 82 (141)
T 2nwf_A 3 SIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGV 82 (141)
T ss_dssp CEEEECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECC
T ss_pred CEEEecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCc
Confidence 4566777999999999999999999999999999999999999999999 6778988 8999999999
Q ss_pred cCCcCcccCC
Q 027584 183 CTHLGFARDQ 192 (221)
Q Consensus 183 CTHLGCIP~~ 192 (221)
|||+||.+..
T Consensus 83 C~H~G~~l~~ 92 (141)
T 2nwf_A 83 CTHLGCVPIG 92 (141)
T ss_dssp CTTTCCCCEE
T ss_pred CCCCCeEccc
Confidence 9999999976
No 4
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.78 E-value=6.9e-19 Score=146.33 Aligned_cols=76 Identities=51% Similarity=0.830 Sum_probs=69.6
Q ss_pred EEEeccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCc------------ccccccC--CCcEEEEEcc
Q 027584 117 YFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQ------------QDAERVK--NPEWLVVVGV 182 (221)
Q Consensus 117 y~~~~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPq------------sd~~Rs~--~PEwLVvIGI 182 (221)
.+.+..+.|++|++++|+|+||||||+|||++||+.++++++++|+||+ ++..|.. +.+|+++.++
T Consensus 49 ~v~v~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~~ 128 (187)
T 2qjy_C 49 SIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGV 128 (187)
T ss_dssp CEEEECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEECC
T ss_pred cEEEEHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeCc
Confidence 3445666999999999999999999999999999999999999999999 7778876 8999999999
Q ss_pred cCCcCcccCC
Q 027584 183 CTHLGFARDQ 192 (221)
Q Consensus 183 CTHLGCIP~~ 192 (221)
|||+||.+..
T Consensus 129 C~H~G~~l~~ 138 (187)
T 2qjy_C 129 CTHLGCSPIG 138 (187)
T ss_dssp CTTTSCCCEE
T ss_pred cCCCCeECcc
Confidence 9999999976
No 5
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.70 E-value=3.2e-17 Score=128.22 Aligned_cols=76 Identities=45% Similarity=0.910 Sum_probs=70.3
Q ss_pred EEeccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccCCC
Q 027584 118 FVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARDQH 193 (221)
Q Consensus 118 ~~~~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~~~ 193 (221)
+.+..+.|++|+.++|+|+|+||||+|+|++||+.+.+.++..|+||+++..|+.+.+|.++..+|||+||.+...
T Consensus 7 ~~v~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g 82 (129)
T 1rie_A 7 IEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIAN 82 (129)
T ss_dssp EEEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEET
T ss_pred eEeeHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeecccc
Confidence 3445569999999999999999999999999999999999999999999999999999999999999999988654
No 6
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.17 E-value=9.2e-13 Score=107.95 Aligned_cols=69 Identities=19% Similarity=0.368 Sum_probs=52.5
Q ss_pred eccCCCCCCCeEEEEECCeeE--EEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccC
Q 027584 120 LTGGSIEPGSTVTVKWRGKPV--FIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARD 191 (221)
Q Consensus 120 ~~~~~IepGq~vtVkWRGKPV--FI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~ 191 (221)
+..+.|++|++++|+|+|||+ ||++++++++..+..++++++ ||+.. .|..+. |+++.++|||+||.+.
T Consensus 25 v~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~-~~~~~-~~~~~g-v~A~~~~CpH~G~~L~ 95 (165)
T 1nyk_A 25 IRLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEEL-APEVA-QHAAEG-VVAYSAVCTHLGCIVS 95 (165)
T ss_dssp CBGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGS-CHHHH-TTCBTT-EEEEECBCTTTCCBCC
T ss_pred ecHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhc-Ccccc-ccccCC-EEEEEeecCCCCeEcc
Confidence 344589999999999999998 555555555444456666777 77663 466554 9999999999999886
No 7
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=98.48 E-value=1.4e-09 Score=92.06 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=51.2
Q ss_pred EEeccCCCCCCCeEEEEECCeeEEE----EeCCHHHHHHhhcCCC---CCCCCCcc-------cccccC-----CCcEEE
Q 027584 118 FVLTGGSIEPGSTVTVKWRGKPVFI----RRRTEEDIKLANSVDL---GSLRDPQQ-------DAERVK-----NPEWLV 178 (221)
Q Consensus 118 ~~~~~~~IepGq~vtVkWRGKPVFI----~rRT~eeI~~l~~vd~---~~LrDPqs-------d~~Rs~-----~PEwLV 178 (221)
+++..++| +|+++++ |||||| ++||++|+.++.+.+. -++.|++. +..|++ +.++.+
T Consensus 14 ~~~d~~~i-~~~l~~~---g~pv~vf~yP~~~~p~~l~~l~~~~~~~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A 89 (204)
T 1jm1_A 14 KVANIQQV-QQQIKSS---GCAVYFFAYPLTDEPCFLVDLQALTGQQITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFA 89 (204)
T ss_dssp EEEEHHHH-HHHHHHH---CCCEEEEECSSTTCEEEEEEHHHHHSSCCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEE
T ss_pred EEEccccC-hHHhccC---CceEEEeecCCCCCHHHHHhcccccccceEeeCCceEEEEecCccccccccccccCCEEEE
Confidence 44555569 9999777 999999 9999987766543221 12334332 345655 799999
Q ss_pred EEcccCCcCcccCC
Q 027584 179 VVGVCTHLGFARDQ 192 (221)
Q Consensus 179 vIGICTHLGCIP~~ 192 (221)
+.++|||+||.+..
T Consensus 90 ~~n~CpH~G~~L~~ 103 (204)
T 1jm1_A 90 FSDVCVHLGCQLPA 103 (204)
T ss_dssp EESBCTTTCCBCCT
T ss_pred EeCcCCCCCcCccc
Confidence 99999999998864
No 8
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=97.61 E-value=3.4e-05 Score=60.23 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=43.3
Q ss_pred cCCCCCCCeEEEEEC--CeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccCC
Q 027584 122 GGSIEPGSTVTVKWR--GKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARDQ 192 (221)
Q Consensus 122 ~~~IepGq~vtVkWR--GKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~~ 192 (221)
.+.|++|+.+++.|. |+||+|+|.++++. . .+-.+.++.++..+|||+||...+
T Consensus 14 ~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~--------~---------~~~~~g~~~A~~n~CpH~g~~L~~ 69 (133)
T 1g8k_B 14 AKNLAANEPVSFTYPDTSSPCVAVKLGAPVP--------G---------GVGPDDDIVAYSVLCTHMGCPTSY 69 (133)
T ss_dssp GGGCCBTCCEEEECSSTTSEEEEEECSSCCT--------T---------CBTTTTCEEEEECBCTTTCCBCEE
T ss_pred HHHCCCCCeEEEEecCCCceEEEEEcccccc--------c---------cccCCCEEEEEeCcCCCCCCCCCc
Confidence 459999999999997 99999999865321 0 112367899999999999998865
No 9
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=97.55 E-value=1.5e-05 Score=65.13 Aligned_cols=47 Identities=30% Similarity=0.491 Sum_probs=33.9
Q ss_pred CCCCCCeEEEE-ECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccCCCC
Q 027584 124 SIEPGSTVTVK-WRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARDQHH 194 (221)
Q Consensus 124 ~IepGq~vtVk-WRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~~~~ 194 (221)
.|++|+.+.+. +.|+|++++++... ++ ++.++.++|||+||.+.++.
T Consensus 72 ~l~~g~~~~~~~~~g~~~~lv~~~~g-----------~~-------------~~~a~~~~CtH~G~~l~~~~ 119 (179)
T 1vf5_D 72 SHNAGDRVLVQGLKGDPTYIVVESKE-----------AI-------------RDYGINAVCTHLGCVVPWNA 119 (179)
T ss_dssp CCCTTCCCEESCSSSSCEECCBCTTC-----------CB-------------CSCCCBCBCTTTSCBCCBCS
T ss_pred ccCCCceEEEeccCCCeEEEEEECCC-----------cE-------------EEEEEeCccCCCCCCCcccC
Confidence 67888888776 78888877766311 00 12577899999999997654
No 10
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=97.43 E-value=0.00033 Score=52.17 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=37.0
Q ss_pred ccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcc
Q 027584 121 TGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFA 189 (221)
Q Consensus 121 ~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCI 189 (221)
....|++|+.+++++.|++|+|.|. +.++.++..+|||+||-
T Consensus 11 ~~~~l~~g~~~~~~~~g~~i~v~r~---------------------------~g~~~A~~n~CpH~g~~ 52 (112)
T 1fqt_A 11 DRRDVPEGEALKVESGGTSVAIFNV---------------------------DGELFATQDRCTHGDWS 52 (112)
T ss_dssp EGGGSCTTCEEEEEETTEEEEEEEE---------------------------TTEEEEEESBCTTSSCB
T ss_pred eHHHCCCCCeEEEEECCEEEEEEEE---------------------------CCEEEEEECCCCCCCcC
Confidence 3458999999999999999999875 35799999999999994
No 11
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=97.41 E-value=0.00031 Score=53.51 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=38.5
Q ss_pred eccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccC
Q 027584 120 LTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARD 191 (221)
Q Consensus 120 ~~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~ 191 (221)
.....|++|+.+.+++.|++|+|.|. +.++.++..+|||+||.-.
T Consensus 15 ~~~~el~~g~~~~~~~~g~~v~v~r~---------------------------~g~~~A~~n~CpH~g~~L~ 59 (121)
T 3gce_A 15 ATLDQLKPGVPTAFDVDGDEVMVVRD---------------------------GDSVYAISNLCSHAEAYLD 59 (121)
T ss_dssp EEGGGSCTTCCEEEEETTEEEEEEEE---------------------------TTEEEEEESBCSSSSCBGG
T ss_pred EEHHHCCCCCEEEEEECCEEEEEEEE---------------------------CCEEEEEeCcCCCCCCCCC
Confidence 34559999999999999999999874 3579999999999999543
No 12
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=97.37 E-value=0.00052 Score=50.17 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=37.9
Q ss_pred ccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccC
Q 027584 121 TGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARD 191 (221)
Q Consensus 121 ~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~ 191 (221)
....|++|+.+++++.|++|+|.|. +.++.++..+|+|+||.-.
T Consensus 9 ~~~~l~~g~~~~~~~~g~~i~v~r~---------------------------~g~~~A~~~~CpH~g~~L~ 52 (103)
T 2qpz_A 9 ALSDILEGDVLGVTVEGKELALYEV---------------------------EGEIYATDNLCTHGSARMS 52 (103)
T ss_dssp ETTSCCTTCEEEEEETTEEEEEEEE---------------------------TTEEEEEESBCSSSSCBGG
T ss_pred EHHHcCCCCEEEEEECCEEEEEEEE---------------------------CCEEEEECCcCCCCCCCCC
Confidence 3558999999999999999999873 3579999999999999754
No 13
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=97.32 E-value=0.00028 Score=51.96 Aligned_cols=45 Identities=27% Similarity=0.465 Sum_probs=38.1
Q ss_pred eccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccC
Q 027584 120 LTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARD 191 (221)
Q Consensus 120 ~~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~ 191 (221)
.....|++|+.+++++.|++|+|.|. +.++.++..+|||+||.-.
T Consensus 6 ~~~~~l~~g~~~~~~~~g~~i~v~r~---------------------------~g~~~A~~~~CpH~g~~L~ 50 (106)
T 3dqy_A 6 LRQGDLPPGEMQRYEGGPEPVMVCNV---------------------------DGEFFAVQDTCTHGDWALS 50 (106)
T ss_dssp EEGGGSCTTCEEEECCSSSCEEEEEE---------------------------TTEEEEEESBCSSSSCBGG
T ss_pred EEHHHCCCCCEEEEEECCEEEEEEEE---------------------------CCEEEEEeCcCCCCCCCCc
Confidence 33459999999999999999999863 4579999999999999543
No 14
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=97.10 E-value=0.001 Score=49.29 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=37.7
Q ss_pred ccCCCCCCCeEEEEE-CCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCccc
Q 027584 121 TGGSIEPGSTVTVKW-RGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFAR 190 (221)
Q Consensus 121 ~~~~IepGq~vtVkW-RGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP 190 (221)
....|++|+.+++++ .|++|+|.|.. +.++.++..+|||+||.-
T Consensus 7 ~~~~l~~g~~~~~~~~~g~~v~v~r~~--------------------------~g~~~A~~~~CpH~g~~L 51 (111)
T 1vm9_A 7 SLDDIWVGEMETFETSDGTEVLIVNSE--------------------------EHGVKAYQAMCPHQEILL 51 (111)
T ss_dssp EGGGSCTTCEEEEECTTCCEEEEEEET--------------------------TTEEEEEESBCSSSSCBG
T ss_pred EHHHCCCCCeEEEEEcCCCEEEEEEeC--------------------------CCeEEEEeCcCCCCCcCC
Confidence 345899999999999 99999998751 468999999999999943
No 15
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=97.07 E-value=0.0012 Score=49.71 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=38.1
Q ss_pred eccCCCCCCCeEEEEECCe-eEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccCC
Q 027584 120 LTGGSIEPGSTVTVKWRGK-PVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARDQ 192 (221)
Q Consensus 120 ~~~~~IepGq~vtVkWRGK-PVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~~ 192 (221)
.....|++|+.+++++.|+ +|+|.|. +.++.++..+|||+|| |+.
T Consensus 9 ~~~~el~~g~~~~~~~~g~~~v~v~r~---------------------------~g~~~A~~n~CpH~g~-~L~ 54 (115)
T 2de6_D 9 CAASDMQPGTIRRVNRVGAAPLAVYRV---------------------------GDQFYATEDTCTHGIA-SLS 54 (115)
T ss_dssp EEGGGCCTTEEEEEEETTEEEEEEEEE---------------------------TTEEEEEESBCTTSSC-BGG
T ss_pred EEHHHCCCCCeEEEEECCccEEEEEEE---------------------------CCEEEEEeCCCCCCCC-CCc
Confidence 3355999999999999999 9999874 3579999999999999 543
No 16
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=97.04 E-value=0.00032 Score=57.90 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=43.1
Q ss_pred ccCCCCCCCeEEEEEC--CeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccCCC
Q 027584 121 TGGSIEPGSTVTVKWR--GKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARDQH 193 (221)
Q Consensus 121 ~~~~IepGq~vtVkWR--GKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~~~ 193 (221)
..+.|++|+.++|+|. |+||+|+|..++. .. .|..+.+|.++..+|||+||.-.+.
T Consensus 56 ~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~---------~~--------~r~~~G~v~A~~n~CpH~G~~L~~g 113 (175)
T 4aay_B 56 NISELTLNEPLDVAYPDEDAAGVLLKLGTRV---------EG--------GVGPDGDIVGFSTICPHKGFPLSYS 113 (175)
T ss_dssp EGGGCBBTBCEEEESSSTTSEEEEEECSSCC---------TT--------CBTTTTCEEEEECBCTTTCCBCEEE
T ss_pred EHHHCCCCCEEEEEECCCCCEEEEEEccccc---------cc--------ccCCCCEEEEEeCCCCCCCCCCccC
Confidence 3559999999999996 5799999975432 12 3445689999999999999966543
No 17
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=96.96 E-value=0.00077 Score=49.74 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=37.3
Q ss_pred ccCCCCCCCeEEEEECCee-EEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccCC
Q 027584 121 TGGSIEPGSTVTVKWRGKP-VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARDQ 192 (221)
Q Consensus 121 ~~~~IepGq~vtVkWRGKP-VFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~~ 192 (221)
....|++|+.++++..|++ |+|.|. +.++.++..+|||+|| |+.
T Consensus 9 ~~~~l~~g~~~~~~~~g~~~v~v~r~---------------------------~g~~~A~~~~CpH~g~-~L~ 53 (108)
T 2i7f_A 9 QVASVKDGEPVAVYQEKMPALAVYNV---------------------------DGEVFVTDNLCTHGNA-MLT 53 (108)
T ss_dssp EGGGCBTTBCEEECCTTSSCEEEEEE---------------------------TTEEEEEESBCSSSSC-BGG
T ss_pred EHhHcCCCCeEEEEECCeeEEEEEEE---------------------------CCEEEEEeCcCCCCCC-CCC
Confidence 3458999999999999999 998874 3579999999999999 543
No 18
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=96.50 E-value=0.009 Score=44.27 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=39.5
Q ss_pred eccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCC-cEEEEEcccCCcCcccCCC
Q 027584 120 LTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNP-EWLVVVGVCTHLGFARDQH 193 (221)
Q Consensus 120 ~~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~P-EwLVvIGICTHLGCIP~~~ 193 (221)
.....|++|+.+.++-.|++|+|.|.. +. ++.++..+|+|+||.|+..
T Consensus 11 ~~~~el~~g~~~~~~~~g~~i~v~r~~--------------------------~g~~~~A~~n~CpH~g~~~L~~ 59 (113)
T 2jo6_A 11 CKIDDILPETGVCALLGDEQVAIFRPY--------------------------HSDQVFAISNIDPFFESSVLSR 59 (113)
T ss_dssp EETTTSCTTEEEEEEETTEEEEEEECS--------------------------SSSCCEEEESSCSSSCCSCSTT
T ss_pred eeHHHCCCCCeEEEEECCEEEEEEEEC--------------------------CCCEEEEEeCcCCCCCCcccCC
Confidence 345699999999999999999998751 34 5999999999999977653
No 19
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=96.29 E-value=0.0073 Score=45.60 Aligned_cols=46 Identities=13% Similarity=-0.139 Sum_probs=39.1
Q ss_pred ccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccCC
Q 027584 121 TGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARDQ 192 (221)
Q Consensus 121 ~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~~ 192 (221)
....|++|+.+.++-.|+||+|.|. .+.++.++..+|||+||.|+.
T Consensus 11 ~~~el~~g~~~~~~~~g~~v~v~r~--------------------------~~G~~~A~~n~CpH~g~~~L~ 56 (119)
T 3c0d_A 11 QLDDLMPFIGATVLIEGERVALFYI--------------------------PDSGVYAVQDWDPIGKAYVMS 56 (119)
T ss_dssp EGGGSCBTCCEEEEETTEEEEEEEE--------------------------TTTEEEEEESEETTTTEECGG
T ss_pred EHHHCCCCCeEEEEECCeEEEEEEe--------------------------cCCeEEEEeCCCCCCCCccCC
Confidence 3458999999999999999999874 146899999999999997764
No 20
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=95.97 E-value=0.015 Score=44.79 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=38.7
Q ss_pred ccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccCCC
Q 027584 121 TGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARDQH 193 (221)
Q Consensus 121 ~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~~~ 193 (221)
....|++|+.+.++-.|++|+|.|.. | ..++.++..+|||+||.|+..
T Consensus 9 ~~~el~~g~~~~~~~~g~~i~v~r~~----------------~---------g~~v~A~~n~CpH~g~~~L~~ 56 (130)
T 2jza_A 9 KLDDILPGTGVCALVEQQQIAVFRPR----------------N---------DEQVYAISNIDPFAQASVLSR 56 (130)
T ss_dssp ETTTSCTTBCCEEEETTEEEEEEBCS----------------S---------SSCCEEEBCCCTTTSSGGGTS
T ss_pred EHHHCCCCCeEEEEECCcEEEEEEEC----------------C---------CCEEEEEeCcCCCCCCCcCCC
Confidence 34589999999999999999998641 0 237999999999999976543
No 21
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=94.73 E-value=0.017 Score=45.48 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=39.8
Q ss_pred cceeEEEeccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccCC
Q 027584 113 RAFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARDQ 192 (221)
Q Consensus 113 r~f~y~~~~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~~ 192 (221)
+.+.++. ....|++|+.++++-.|++|+|.|. +.++.++..+|+|.|| |+.
T Consensus 15 ~~W~~v~-~~~el~~g~~~~~~~~g~~i~v~r~---------------------------~G~v~A~~n~CpH~g~-~L~ 65 (157)
T 3d89_A 15 YTSVCVG-REEDIRKSERMTAVVHDREVVIFYH---------------------------KGEYHAMDIRCYHSGG-PLH 65 (157)
T ss_dssp CSCEEEE-EHHHHHHHSEEEEEETTEEEEEEEE---------------------------TTEEEEEESBCTTTCC-BGG
T ss_pred CceEEEE-EHHHCCCCCeEEEEECCEEEEEEEE---------------------------CCEEEEEeCCCCCCCC-CCc
Confidence 3444433 3448888999999999999999874 4579999999999999 443
No 22
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=94.54 E-value=0.038 Score=43.47 Aligned_cols=43 Identities=23% Similarity=0.508 Sum_probs=33.5
Q ss_pred CCCCCCeEEEE-ECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcE--EEEEcccCCcCcccCC
Q 027584 124 SIEPGSTVTVK-WRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEW--LVVVGVCTHLGFARDQ 192 (221)
Q Consensus 124 ~IepGq~vtVk-WRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEw--LVvIGICTHLGCIP~~ 192 (221)
.|++|+.+.+. ..|++++++++. +.++ .++..+|||+||....
T Consensus 31 dlp~g~~~~~~~~~g~~~ilv~~~--------------------------~G~i~~~A~~n~CpH~g~~L~~ 76 (139)
T 1rfs_A 31 THAPGDRTLTQGLKGDPTYLVVES--------------------------DKTLATFGINAVCTHLGCVVPF 76 (139)
T ss_dssp HSCTTCEEEEECGGGCEEEEEBCT--------------------------TSSBCSEEEECBCTTTCCBCCE
T ss_pred hCCCCccEEEEecCCCeEEEEEeC--------------------------CCcEEEEEEeCcCCCCCCCCcc
Confidence 68999988887 578898887762 2344 8899999999997654
No 23
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=92.07 E-value=0.29 Score=43.50 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=39.4
Q ss_pred cceeEEEeccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCccc
Q 027584 113 RAFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFAR 190 (221)
Q Consensus 113 r~f~y~~~~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP 190 (221)
+.+.+ +.-...|++|+.++++.-|+||+|.|. +.++.++..+|+|.||.-
T Consensus 27 ~~W~~-v~~~~el~~g~~~~~~~~g~~vvl~R~---------------------------~G~v~a~~n~CpHrga~L 76 (392)
T 2de6_A 27 NHWYP-VMFSKEINEGEPKTLKLLGENLLVNRI---------------------------DGKLYCLKDRCLHRGVQL 76 (392)
T ss_dssp SEEEE-EEEGGGSCBTCCEEEEETTEEEEEEEE---------------------------TTEEEEEESSCTTTCCCG
T ss_pred cccEE-EEEHHHCCCCCeEEEEECCEEEEEEEe---------------------------CCEEEEEeCcCCCCCCCC
Confidence 34444 444558999999999999999988763 457889999999999854
No 24
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=92.00 E-value=0.26 Score=45.66 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=40.1
Q ss_pred eEEEeccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccC
Q 027584 116 AYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARD 191 (221)
Q Consensus 116 ~y~~~~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~ 191 (221)
=|.+.-...|++|+.++++.-|+||+|.|. +.++.++..+|+|.||-=.
T Consensus 35 W~~V~~~~ELp~G~~~~v~i~G~~VvV~R~---------------------------dG~v~A~~N~CpHRGa~Ls 83 (394)
T 3gcf_A 35 WHPAAFDHELAEGEFVAVTMLGEKVLLTRA---------------------------KGEVKAIADGCAHRGVPFS 83 (394)
T ss_dssp EEEEEEGGGCCBTCEEEEEETTEEEEEEEE---------------------------TTEEEEEESSCTTTCCCGG
T ss_pred CEEEEEHHHCCCCCeEEEEECCEEEEEEEe---------------------------CCeEEEeeCcCCCCCCCCc
Confidence 345555569999999999999999998763 4678899999999999644
No 25
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=91.80 E-value=0.34 Score=43.30 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=40.0
Q ss_pred cceeEEEeccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCccc
Q 027584 113 RAFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFAR 190 (221)
Q Consensus 113 r~f~y~~~~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP 190 (221)
+.+.++ .-...|++|+.++++.-|+||+|.|- .+.++.++-.+|+|.||.-
T Consensus 24 ~~W~~v-~~~~el~~g~~~~~~~~g~~vvl~R~--------------------------~~G~v~a~~n~CpHrga~L 74 (386)
T 2zyl_A 24 RGWHCL-GVAKDYLEGKPHGVEAFGTKLVVFAD--------------------------SHGDLKVLDGYCRHMGGDL 74 (386)
T ss_dssp SEEEEE-EEGGGGCSSSCEEEEETTEEEEEEEC--------------------------TTSCEEEEESBCTTTCCBG
T ss_pred cceEEE-EEHHHCCCCCeEEEEECCeEEEEEEC--------------------------CCCCEEEEcCcCCCCCCCC
Confidence 444443 33458999999999999999988864 1467999999999999853
No 26
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=91.67 E-value=0.36 Score=43.89 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=39.7
Q ss_pred cceeEEEeccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCccc
Q 027584 113 RAFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFAR 190 (221)
Q Consensus 113 r~f~y~~~~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP 190 (221)
+.+.++. -...|++|+.++++.-|+||+|.|. +.++.++..+|+|.||.=
T Consensus 42 ~~W~~v~-~~~el~~g~~~~~~~~g~~vvl~r~---------------------------~G~v~a~~n~CpHrga~L 91 (446)
T 1z01_A 42 NHWYPAL-FTHELEEDQVQGIQICGVPIVLRRV---------------------------NGKVFALKDQCLHRGVRL 91 (446)
T ss_dssp SEEEEEE-EGGGSCBTCEEEEEETTEEEEEEEE---------------------------TTEEEEEESSCTTTCCCG
T ss_pred hceEEEE-EHHHCCCCCeEEEEECCEEEEEEEe---------------------------CCEEEEEeCcCCCCcCCC
Confidence 4455443 3458999999999999999988763 467889999999999953
No 27
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=91.64 E-value=0.37 Score=42.42 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=38.1
Q ss_pred EEEeccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCccc
Q 027584 117 YFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFAR 190 (221)
Q Consensus 117 y~~~~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP 190 (221)
|.+.-...| +|+.++++.-|+||+|.|- .+.++.++..+|+|.||-=
T Consensus 10 ~~v~~~~el-~g~~~~~~~~g~~vvv~R~--------------------------~~G~v~a~~n~CpHrg~~L 56 (349)
T 3gke_A 10 YVAALPEEL-SEKPLGRTILDTPLALYRQ--------------------------PDGVVAALLDICPHRFAPL 56 (349)
T ss_dssp EEEECGGGC-CSSCEEEEETTEEEEEEEC--------------------------TTSCEEEEESSCTTTCCCG
T ss_pred EEEEEHHHC-CCCeEEEEECCEEEEEEEc--------------------------CCCcEEEEeCcCCCCCcCC
Confidence 344445589 9999999999999998873 1467999999999999854
No 28
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=91.30 E-value=0.37 Score=44.58 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=39.9
Q ss_pred cceeEEEeccCCCCCCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCccc
Q 027584 113 RAFAYFVLTGGSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFAR 190 (221)
Q Consensus 113 r~f~y~~~~~~~IepGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP 190 (221)
+.+. .+.-...|++|+.++++.-|+||+|.|. +.++.++..+|+|.||-=
T Consensus 30 ~~W~-~V~~~~ELp~G~~~~v~i~G~~VvV~R~---------------------------dG~v~A~~N~CpHRGa~L 79 (389)
T 3gkq_A 30 NHWY-PVRLSAEVAEASPVPVQLLGEKVLLNRV---------------------------DGVVHAIADRCLHRGVTL 79 (389)
T ss_dssp SEEE-EEEEGGGSCBTCCEEEEETTEEEEEEEE---------------------------TTEEEEEESSCTTTCCCG
T ss_pred CccE-EEEEHHHCCCCCeEEEEECCEEEEEEEe---------------------------CCeEEEeCCcCCCCCCCc
Confidence 3444 4444569999999999999999988763 467889999999999854
No 29
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=90.57 E-value=0.64 Score=42.40 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=41.0
Q ss_pred cceeEEEeccCCCC-CCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccC
Q 027584 113 RAFAYFVLTGGSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARD 191 (221)
Q Consensus 113 r~f~y~~~~~~~Ie-pGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~ 191 (221)
+.+.++.. ...|+ +|+.++++.-|+||+|.|- .+.++.++..+|+|.||--.
T Consensus 40 ~~W~~v~~-~~elp~~G~~~~~~i~g~~vvv~R~--------------------------~dG~v~A~~n~C~Hrga~L~ 92 (409)
T 3n0q_A 40 KEWLFAIP-ACELDKPGSYVTHQVGNYNVIIVRG--------------------------ADNVIRAFHNACRHRGSVIC 92 (409)
T ss_dssp TSCEEEEE-GGGSCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESCCTTTCCCSC
T ss_pred cCCEEEEE-HHHCCCCCCeEEEEECCEEEEEEEc--------------------------CCCCEEeecCcCCcCcCCcc
Confidence 55655544 35896 6999999999999998874 15689999999999998543
No 30
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=89.80 E-value=0.8 Score=34.85 Aligned_cols=44 Identities=25% Similarity=0.169 Sum_probs=35.3
Q ss_pred ccCCCCCCCeEEEEE-CCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCccc
Q 027584 121 TGGSIEPGSTVTVKW-RGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFAR 190 (221)
Q Consensus 121 ~~~~IepGq~vtVkW-RGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP 190 (221)
....|+||+.+.+.- .|++|.|.|. .+.++.++-..|+|.|+--
T Consensus 15 ~~~dL~~g~~~~~~~~~G~~v~l~r~--------------------------~dG~v~A~~n~CpH~ga~L 59 (119)
T 4aiv_A 15 AYDHLIPGRGVGVLLDDGSQVALFRL--------------------------DDGSVHAVGNVDPFSGAAV 59 (119)
T ss_dssp EGGGSCTTCCEEEECTTSCEEEEEEC--------------------------TTSCEEEEESBCTTTCCBC
T ss_pred EHHHcCCCCceEEEEcCCcEEEEEEc--------------------------CCCeEEEEECCCCCCCCcc
Confidence 345999999888876 4899988874 1467999999999999854
No 31
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=89.55 E-value=0.69 Score=42.23 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=41.1
Q ss_pred cceeEEEeccCCCC-CCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccC
Q 027584 113 RAFAYFVLTGGSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARD 191 (221)
Q Consensus 113 r~f~y~~~~~~~Ie-pGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~ 191 (221)
+.+.++.. ...|+ +|+.++++.-|+||+|.|- .+.++.++..+|+|.||.-.
T Consensus 42 ~~W~~v~~-~~elp~~G~~~~~~i~g~~vvv~R~--------------------------~dG~v~A~~n~CpHrga~L~ 94 (412)
T 3vca_A 42 KQWLYAVP-VCQLAKAGSYTTLRVGAYEVVIVRS--------------------------RDGEVRAFHNSCRHRGSLIC 94 (412)
T ss_dssp TSCEEEEE-GGGGCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESSCTTTCCCSC
T ss_pred ccCEEEEE-HHHCCCCCCeEEEEECCEEEEEEEc--------------------------CCCCEEEecccCCCCCCEee
Confidence 55655543 45897 6999999999999999874 14679999999999998654
No 32
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=89.52 E-value=0.73 Score=41.82 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=39.7
Q ss_pred cceeEEEeccCCCC-CCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcc
Q 027584 113 RAFAYFVLTGGSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFA 189 (221)
Q Consensus 113 r~f~y~~~~~~~Ie-pGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCI 189 (221)
+.+.++.. ...|+ +|+.+++.--|+||+|.|- .+.++.++..+|+|.||-
T Consensus 36 ~~W~~v~~-~~el~~~g~~~~~~~~~~~vvv~R~--------------------------~~G~v~a~~n~CpHrga~ 86 (454)
T 2gbw_A 36 RAWLMLGH-ESLVPKPGDFITTYMAEDKVILSHQ--------------------------SDGTFRAFINSCSHRGNQ 86 (454)
T ss_dssp TSCEEEEE-GGGSCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESSCTTTCCC
T ss_pred cCcEEEeE-HHHCCCCCCeEEEEECCeEEEEEEc--------------------------CCCCEEEEeccCCCCCCC
Confidence 45655443 45898 6999999999999988763 156899999999999984
No 33
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=89.21 E-value=0.81 Score=41.33 Aligned_cols=50 Identities=24% Similarity=0.423 Sum_probs=39.7
Q ss_pred cceeEEEeccCCCC-CCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcc
Q 027584 113 RAFAYFVLTGGSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFA 189 (221)
Q Consensus 113 r~f~y~~~~~~~Ie-pGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCI 189 (221)
+.+.++.. ...|+ +|..+++.--|+||+|.|- .+.++.++..+|+|.||-
T Consensus 35 ~~W~~v~~-~~el~~~g~~~~~~~~~~~vvv~R~--------------------------~~G~v~a~~n~CpHrga~ 85 (447)
T 2bmo_A 35 RNWLFLTH-DSLIPSPGDYVKAKMGVDEVIVSRQ--------------------------NDGSVRAFLNVCRHRGKT 85 (447)
T ss_dssp TSCEEEEE-GGGSCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESBCTTTCCB
T ss_pred cCCeEEeE-HHHCCCCCCeEEEEECCeeEEEEEC--------------------------CCCCEEEEeccCcCCCCC
Confidence 45655443 45897 7999999999999988764 156799999999999985
No 34
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=89.14 E-value=0.96 Score=41.29 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=39.2
Q ss_pred cceeEEEeccCCCCC-CCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcc
Q 027584 113 RAFAYFVLTGGSIEP-GSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFA 189 (221)
Q Consensus 113 r~f~y~~~~~~~Iep-Gq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCI 189 (221)
+.+.++.. ...|++ |+.+++..-|+||+|.|- .+.++.++..+|+|.||.
T Consensus 44 ~~W~~v~~-~~el~~~g~~~~~~~~g~~vvv~R~--------------------------~~G~v~a~~n~C~Hrga~ 94 (470)
T 2b1x_A 44 HAWVFLAH-ESEIPERGDYVVRYISEDQFIVCRD--------------------------EGGEIRGHLNACRHRGMQ 94 (470)
T ss_dssp TSCEEEEE-GGGSCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESSCTTTCCC
T ss_pred cCCeEeee-HHHCCCCCCeEEEEECCeEEEEEEc--------------------------CCCCEEEEecccCCCCCE
Confidence 55655543 448885 888999999999988874 156799999999999994
No 35
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=85.91 E-value=1.7 Score=39.66 Aligned_cols=52 Identities=29% Similarity=0.386 Sum_probs=40.2
Q ss_pred cceeEEEeccCCCC-CCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccC
Q 027584 113 RAFAYFVLTGGSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARD 191 (221)
Q Consensus 113 r~f~y~~~~~~~Ie-pGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~ 191 (221)
+.+.++.. ...|+ +|..+++..-|+||+|.|- .+.++.++..+|+|.|| |+
T Consensus 54 ~~W~~v~~-~~el~~~g~~~~~~i~~~~vvv~R~--------------------------~~G~v~a~~n~CpHrga-~L 105 (460)
T 1uli_A 54 RSWLLMGH-ETQIPKAGDFMTNYMGEDPVMVVRQ--------------------------KNGEIRVFLNQCRHRGM-RI 105 (460)
T ss_dssp TSCEEEEE-GGGSCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESCCTTTCC-CS
T ss_pred cCceEEEE-HHHCCCCCCeEEEEECCeEEEEEEc--------------------------CCCCEEEEeeeCCCCCC-CC
Confidence 55655543 45887 5888999999999988764 15689999999999999 45
Q ss_pred C
Q 027584 192 Q 192 (221)
Q Consensus 192 ~ 192 (221)
.
T Consensus 106 ~ 106 (460)
T 1uli_A 106 C 106 (460)
T ss_dssp C
T ss_pred c
Confidence 4
No 36
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=85.67 E-value=0.16 Score=40.11 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=14.4
Q ss_pred EEEEEcccCCcCcccCCC
Q 027584 176 WLVVVGVCTHLGFARDQH 193 (221)
Q Consensus 176 wLVvIGICTHLGCIP~~~ 193 (221)
+.++..+|+|.||.-...
T Consensus 54 v~A~~n~CpH~g~~L~~g 71 (133)
T 3azc_A 54 NYGLNAVCTHLGCVVPWN 71 (133)
Confidence 778889999999966543
No 37
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=82.96 E-value=2.5 Score=39.17 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=40.5
Q ss_pred cceeEEEeccCCCC-CCCeEEEEECCeeEEEEeCCHHHHHHhhcCCCCCCCCCcccccccCCCcEEEEEcccCCcCcccC
Q 027584 113 RAFAYFVLTGGSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGFARD 191 (221)
Q Consensus 113 r~f~y~~~~~~~Ie-pGq~vtVkWRGKPVFI~rRT~eeI~~l~~vd~~~LrDPqsd~~Rs~~PEwLVvIGICTHLGCIP~ 191 (221)
+.+.++.. .+.|+ +|+.++++--|+||+|.|- .+.++.++..+|+|.|+--.
T Consensus 56 ~~W~~v~~-~~elp~~G~~~~~~i~~~~vvv~R~--------------------------~dG~v~A~~n~C~Hrga~L~ 108 (457)
T 3gzx_A 56 RSWLMLGH-ETHIPKIGDYLTTYMGEDPVIMVRQ--------------------------KDQSIKVFLNQCRHRGMRIV 108 (457)
T ss_dssp TSCEEEEE-GGGSCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESCCTTTCCCSC
T ss_pred cCCEEEeE-HHHcCCCCCeEEEEECCEEEEEEEC--------------------------CCCeEEEEeCcCCCCCcCcc
Confidence 55655544 45896 7999999999999988774 15678999999999998543
No 38
>2d7e_A Primosomal protein N'; inter-twined, hydrolase; 2.50A {Escherichia coli} PDB: 2d7g_A* 2d7h_A* 2dwl_A 2dwm_A 2dwn_A*
Probab=38.40 E-value=28 Score=25.51 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=23.6
Q ss_pred CcceeEEEeccCCCCCCCeEEEEECCee
Q 027584 112 KRAFAYFVLTGGSIEPGSTVTVKWRGKP 139 (221)
Q Consensus 112 kr~f~y~~~~~~~IepGq~vtVkWRGKP 139 (221)
.+.|+|.+-..-.+++|..|.|-+.+|-
T Consensus 13 ~~~f~Y~vp~~l~~~~G~rV~VPfg~r~ 40 (105)
T 2d7e_A 13 PRTFDYLLPEGMTVKAGCRVRVPFGKQQ 40 (105)
T ss_dssp SCCEEEECCTTCCCCTTCEEEEEETTTE
T ss_pred CCCEEEeCCCcCCCCCCcEEEEeCCCcc
Confidence 4889998866444899999999999987
No 39
>2laq_A Accessory gland-specific peptide 70A; hydroxiproline rich, signaling protein; HET: HYP; NMR {Drosophila melanogaster}
Probab=27.53 E-value=40 Score=21.88 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=11.6
Q ss_pred ccCCCCCCCCC--CCCccccCccc
Q 027584 189 ARDQHHTIWKY--PLTPSWMRTRC 210 (221)
Q Consensus 189 IP~~~~~~~~~--~l~~~W~~~~~ 210 (221)
||..++...=+ ++++.| ||+|
T Consensus 14 ip~p~~r~KWCRLNlGPaW-GGRc 36 (36)
T 2laq_A 14 IPSPNPRDKWCRLNLGPAW-GGRC 36 (36)
T ss_dssp SSSCSTTSSCCSSCCCTTC-SSCC
T ss_pred CCCCcchhhhheecccccc-cCcC
Confidence 34444444433 678887 5566
No 40
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=23.58 E-value=44 Score=28.92 Aligned_cols=15 Identities=20% Similarity=0.745 Sum_probs=14.5
Q ss_pred CCCCCCeEEEEECCe
Q 027584 124 SIEPGSTVTVKWRGK 138 (221)
Q Consensus 124 ~IepGq~vtVkWRGK 138 (221)
.+++||.+.++|+|+
T Consensus 158 ~~~~GQ~i~~E~~g~ 172 (213)
T 3dlm_A 158 LLKSGQLIKTEWEGT 172 (213)
T ss_dssp CCCTTCEEEEEETTE
T ss_pred EcCCCCEEEEEecCc
Confidence 899999999999999
No 41
>1t62_A Conserved hypothetical protein; NYSGXRC, target T1587, unknown function, PSI, protein struct initiative; 3.00A {Enterococcus faecalis} SCOP: b.122.1.4
Probab=23.08 E-value=27 Score=28.82 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=17.6
Q ss_pred CCC-CeEEEEECCeeEEEEeCCH
Q 027584 126 EPG-STVTVKWRGKPVFIRRRTE 147 (221)
Q Consensus 126 epG-q~vtVkWRGKPVFI~rRT~ 147 (221)
++| -.|++.|+|+||.|++-|.
T Consensus 67 ~vG~~~Ivld~~g~pvcii~tt~ 89 (166)
T 1t62_A 67 KAGQYDIILDGQSQPLAIIRTTK 89 (166)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEE
T ss_pred CCCcEEEEEcCCCCEEEEEEEEE
Confidence 346 5688899999999998754
No 42
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3
Probab=22.89 E-value=31 Score=29.33 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=15.7
Q ss_pred ccCCCcEEEEEcccCCcCccc
Q 027584 170 RVKNPEWLVVVGVCTHLGFAR 190 (221)
Q Consensus 170 Rs~~PEwLVvIGICTHLGCIP 190 (221)
|..+-+-+|+.|++|| .||=
T Consensus 160 r~~gi~~lvI~Gv~T~-~CV~ 179 (264)
T 1nba_A 160 TSNRIDTLIVTGATAA-GCVR 179 (264)
T ss_dssp HHTTCCEEEEEEECTT-THHH
T ss_pred HhCCCCEEEEEecCcC-CHHH
Confidence 4456788999999999 6663
Done!