BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027585
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 210 bits (535), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/197 (56%), Positives = 135/197 (68%), Gaps = 5/197 (2%)
Query: 28 ADPDPLQDFCVADLKASA-SLNGFPCKLAAEVTSGDFFFDGLSKEGNT-TIFGSAVTPAN 85
+DPDPLQDFCVADL A S+NG CK +E F L+K GNT T GSAVT +
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 86 VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF---TTNNVFYS 142
V +PG NTLG+SMNRVDFAPGG NPPH HPRA+E G+V+KG+LLVG + N YS
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 143 KVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLT 202
+V+ AGE FVIPRGL+HFQ NVG+ +A +FNS PG V VP TLF S P +P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 203 KTFQVDDDLISTIKSKF 219
K +V+ ++ +KSKF
Sbjct: 181 KALRVEAGVVELLKSKF 197
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 210 bits (534), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 111/196 (56%), Positives = 134/196 (68%), Gaps = 5/196 (2%)
Query: 29 DPDPLQDFCVADLKASA-SLNGFPCKLAAEVTSGDFFFDGLSKEGNT-TIFGSAVTPANV 86
DPDPLQDFCVADL A S+NG CK +E F L+K GNT T GSAVT +V
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61
Query: 87 LAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF---TTNNVFYSK 143
+PG NTLG+SMNRVDFAPGG NPPH HPRA+E G+V+KG+LLVG + N YS+
Sbjct: 62 AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121
Query: 144 VLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTK 203
V+ AGE FVIPRGL+HFQ NVG+ +A +FNS PG V VP TLF S P +P VLTK
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTK 181
Query: 204 TFQVDDDLISTIKSKF 219
+V+ ++ +KSKF
Sbjct: 182 ALRVEAGVVELLKSKF 197
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 207 bits (527), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/197 (55%), Positives = 134/197 (68%), Gaps = 5/197 (2%)
Query: 28 ADPDPLQDFCVADLKASA-SLNGFPCKLAAEVTSGDFFFDGLSKEGNT-TIFGSAVTPAN 85
+DPDPLQDFCVADL A S+NG CK +E F L+K GNT T GSAVT +
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 86 VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF---TTNNVFYS 142
V +PG NTLG+SM RVDFAPGG NPPH HPRA+E G+V+KG+LLVG + N YS
Sbjct: 61 VAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 143 KVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLT 202
+V+ AGE FVIPRGL+HFQ NVG+ +A +FNS PG V VP TLF S P +P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 203 KTFQVDDDLISTIKSKF 219
K +V+ ++ +KSKF
Sbjct: 181 KALRVEAGVVELLKSKF 197
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 68 LSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKG 127
L ++ ++ G+ + A+ FPG + ++ + PG + H HP A E V+ G
Sbjct: 207 LGQQPLVSLGGNELRLASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDG 264
Query: 128 KLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPT 187
++ + F + L G++ +P+G H +N + FN ++ + +
Sbjct: 265 EMDLTVFASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDL-S 323
Query: 188 TLFASTPSVPNQVLTKTFQVDDDLISTI 215
T AS PS VL TFQ+ +L +
Sbjct: 324 TWLASNPS---SVLGNTFQISPELTKKL 348
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Query: 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR 155
G++ + PG + H H A+E V++G+ + + + G ++ PR
Sbjct: 51 GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPR 110
Query: 156 GLIHFQQNVGEGKALAFTAFN--SHLPGAVIVPTTLFASTP 194
G H + +G A FN + GA T + TP
Sbjct: 111 GWGHSIEGIGPDTAKFLLVFNDGTFSEGATFSVTDWLSHTP 151
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 6/133 (4%)
Query: 85 NVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-NVFYSK 143
N L P + G+S V G+ PH + A+ V +GK V N +
Sbjct: 354 NSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDG 413
Query: 144 VLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTK 203
L G++ V+P+ + +Q G + L + F +H +F + PS +VL+
Sbjct: 414 ELRRGQLLVVPQNFVVAEQ--GGEQGLEYVVFKTHHNAVSSYIKDVFRAIPS---EVLSN 468
Query: 204 TFQVDDDLISTIK 216
++ + + +K
Sbjct: 469 SYNLGQSQVRQLK 481
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 6/133 (4%)
Query: 85 NVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-NVFYSK 143
N L P + G+S V G+ PH + A+ V +GK V N +
Sbjct: 355 NSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNXQGNAVFDG 414
Query: 144 VLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTK 203
L G++ V+P+ + +Q G + L + F +H +F + PS +VL+
Sbjct: 415 ELRRGQLLVVPQNFVVAEQ--GGEQGLEYVVFKTHHNAVSSYIKDVFRAIPS---EVLSN 469
Query: 204 TFQVDDDLISTIK 216
++ + + +K
Sbjct: 470 SYNLGQSQVRQLK 482
>pdb|3SQG|A Chain A, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|D Chain D, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|G Chain G, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
Length = 579
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 175 FNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF 219
N LPG ++ + + P + N K F DDDL+ ++ +F
Sbjct: 144 LNHALPGGAVIQEHMVETKPMLVNDSYAKIFSGDDDLVDSVDRRF 188
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 102 VDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQ 161
V PG + H HP E I GK + F ++ + AG++ +P + H+
Sbjct: 262 VTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYV 321
Query: 162 QNVGE 166
+N+G+
Sbjct: 322 ENIGD 326
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 102 VDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQ 161
V PG + H HP E I GK + F ++ + AG++ +P + H+
Sbjct: 262 VTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYV 321
Query: 162 QNVGE 166
+N+G+
Sbjct: 322 ENIGD 326
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 102 VDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQ 161
V PG + H HP E I GK + F ++ + AG++ +P + H+
Sbjct: 262 VTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYV 321
Query: 162 QNVGE 166
+N+G+
Sbjct: 322 ENIGD 326
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 102 VDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQ 161
V PG + H HP E I GK + F ++ + AG++ +P + H+
Sbjct: 260 VTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYV 319
Query: 162 QNVGE 166
+N+G+
Sbjct: 320 ENIGD 324
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 102 VDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQ 161
V PG + H HP E I GK + F ++ + AG++ +P + H+
Sbjct: 262 VTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYV 321
Query: 162 QNVGE 166
+N+G+
Sbjct: 322 ENIGD 326
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 102 VDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQ 161
V PG + H HP E I GK + F ++ + AG++ +P + H+
Sbjct: 262 VTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYV 321
Query: 162 QNVGE 166
+N+G+
Sbjct: 322 ENIGD 326
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 102 VDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQ 161
V PG + H HP E I GK + F ++ + AG++ +P + H+
Sbjct: 257 VTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYV 316
Query: 162 QNVGE 166
+N+G+
Sbjct: 317 ENIGD 321
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 113 HSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIH 159
H H E IV +G L + F N L AGE +VIP+G+ H
Sbjct: 45 HEHADTDEVFIVXEGTLQIAFRDQN-----ITLQAGEXYVIPKGVEH 86
>pdb|3EHK|A Chain A, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|B Chain B, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|C Chain C, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|D Chain D, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|E Chain E, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|F Chain F, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3FZ3|A Chain A, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|B Chain B, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|C Chain C, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|D Chain D, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|E Chain E, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|F Chain F, Crystal Structure Of Almond Pru1 Protein
Length = 531
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 3/137 (2%)
Query: 81 VTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-NV 139
++ N P + L +S R F G+ PH + A VI+G V N +
Sbjct: 378 ISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDA 437
Query: 140 FYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQ 199
+ + G++F++P+ QQ +G + AF + + + ++P++
Sbjct: 438 ILDQEVQQGQLFIVPQNHGVIQQAGNQG--FEYFAFKTEENAFINTLAGRTSFLRALPDE 495
Query: 200 VLTKTFQVDDDLISTIK 216
VL +Q+ + +K
Sbjct: 496 VLANAYQISREQARQLK 512
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 102 VDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQ 161
V PG H HP E I GK F ++ + AG++ +P H+
Sbjct: 262 VTVEPGAXRELHWHPNTHEWQYYISGKARXTVFASDGHARTFNYQAGDVGYVPFAXGHYV 321
Query: 162 QNVGE 166
+N+G+
Sbjct: 322 ENIGD 326
>pdb|1E6Y|A Chain A, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|D Chain D, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 569
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 175 FNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF 219
N +PGA +V + + P++ + K F DD L I +F
Sbjct: 149 LNHAMPGAAVVQEMMVETHPALVDDCYVKVFTGDDALADEIDKQF 193
>pdb|1JUH|A Chain A, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|B Chain B, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|C Chain C, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|D Chain D, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1GQG|A Chain A, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|B Chain B, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|C Chain C, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|D Chain D, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQH|A Chain A, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|B Chain B, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|C Chain C, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|D Chain D, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1H1I|A Chain A, Crystal Structure Of Quercetin 2,3-dioxygenase
Anaerobically Complexed With The Substrate Quercetn
pdb|1H1I|B Chain B, Crystal Structure Of Quercetin 2,3-dioxygenase
Anaerobically Complexed With The Substrate Quercetn
pdb|1H1I|C Chain C, Crystal Structure Of Quercetin 2,3-dioxygenase
Anaerobically Complexed With The Substrate Quercetn
pdb|1H1I|D Chain D, Crystal Structure Of Quercetin 2,3-dioxygenase
Anaerobically Complexed With The Substrate Quercetn
pdb|1H1M|A Chain A, Crystal Structure Of Quercetin 2,3-Dioxygenase
Anaerobically Complexed With The Substrate Kaempferol
pdb|1H1M|B Chain B, Crystal Structure Of Quercetin 2,3-Dioxygenase
Anaerobically Complexed With The Substrate Kaempferol
pdb|1H1M|C Chain C, Crystal Structure Of Quercetin 2,3-Dioxygenase
Anaerobically Complexed With The Substrate Kaempferol
pdb|1H1M|D Chain D, Crystal Structure Of Quercetin 2,3-Dioxygenase
Anaerobically Complexed With The Substrate Kaempferol
Length = 350
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 112 PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIH 159
PH H + E+ KG + + N ++VLS+G+ +PR + H
Sbjct: 65 PHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTH 112
>pdb|3EO7|A Chain A, Crystal Structure Of A Putative Nitroreductase (Ava_2154)
From Anabaena Variabilis Atcc 29413 At 1.80 A Resolution
Length = 511
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 130 LVGFF---TTNNVFYSKVLSAGEMFVIPRG-LIHFQQNVGEGKALAFTAFNSHLPGAVIV 185
L+G F N++ Y L G + V+P L+ QQN+ PG +
Sbjct: 209 LIGGFIDEAVNDLLYIDPLQEGAIAVLPLADLLDIQQNIS--------------PGCTAL 254
Query: 186 PTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF 219
P+ + P VP+ L K F + ++I K
Sbjct: 255 PSATETNYPQVPDGELLKYFHHHTQISASITGKL 288
>pdb|1VJ2|A Chain A, Crystal Structure Of A Novel Family Of
Manganese-Containing Cupin (Tm1459) From Thermotoga
Maritima At 1.65 A Resolution
pdb|1VJ2|B Chain B, Crystal Structure Of A Novel Family Of
Manganese-Containing Cupin (Tm1459) From Thermotoga
Maritima At 1.65 A Resolution
Length = 126
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 105 APGGLNPPHSHPRASESGIVIKGKLLV----GFFTTNNVFY 141
PGGL HSHP E V+KGKL V G T FY
Sbjct: 56 EPGGLIDRHSHPWEHEI-FVLKGKLTVLKEQGEETVEEGFY 95
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/140 (18%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 80 AVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-N 138
+VT A L FP ++ L +S + PH + A+ + G+ L+ N
Sbjct: 321 SVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE 380
Query: 139 VFYSKVLSAGEMFVIPRGLIHFQQNVGEG-KALAFTAFNSHLPGAVIVPTTLFASTPSVP 197
+ L G + ++P+ + ++ + + ++F ++ + G + +L ++P
Sbjct: 381 RVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLN---ALP 437
Query: 198 NQVLTKTFQVDDDLISTIKS 217
+V+ TF + IK+
Sbjct: 438 EEVIQHTFNLKSQQARQIKN 457
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/140 (18%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 80 AVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-N 138
+VT A L FP ++ L +S + PH + A+ + G+ L+ N
Sbjct: 321 SVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE 380
Query: 139 VFYSKVLSAGEMFVIPRGLIHFQQNVGEG-KALAFTAFNSHLPGAVIVPTTLFASTPSVP 197
+ L G + ++P+ + ++ + + ++F ++ + G + +L ++P
Sbjct: 381 RVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLN---ALP 437
Query: 198 NQVLTKTFQVDDDLISTIKS 217
+V+ TF + IK+
Sbjct: 438 EEVIQHTFNLKSQQARQIKN 457
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/140 (18%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 80 AVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-N 138
+VT A L FP ++ L +S + PH + A+ + G+ L+ N
Sbjct: 321 SVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE 380
Query: 139 VFYSKVLSAGEMFVIPRGLIHFQQNVGEG-KALAFTAFNSHLPGAVIVPTTLFASTPSVP 197
+ L G + ++P+ + ++ + + ++F ++ + G + +L ++P
Sbjct: 381 RVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLN---ALP 437
Query: 198 NQVLTKTFQVDDDLISTIKS 217
+V+ TF + IK+
Sbjct: 438 EEVIQHTFNLKSQQARQIKN 457
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,176,870
Number of Sequences: 62578
Number of extensions: 244102
Number of successful extensions: 503
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 27
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)