Query 027585
Match_columns 221
No_of_seqs 342 out of 1715
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 12:07:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 99.9 1E-26 2.2E-31 210.9 19.5 162 50-218 201-362 (367)
2 TIGR03404 bicupin_oxalic bicup 99.9 4E-23 8.8E-28 187.4 17.8 137 74-218 46-185 (367)
3 PLN00212 glutelin; Provisional 99.9 1.6E-22 3.5E-27 188.3 17.9 145 72-220 322-470 (493)
4 PF00190 Cupin_1: Cupin; Inte 99.9 5.4E-22 1.2E-26 157.8 11.6 132 69-213 4-144 (144)
5 smart00835 Cupin_1 Cupin. This 99.8 9.6E-20 2.1E-24 145.2 17.1 134 75-212 8-145 (146)
6 PLN00212 glutelin; Provisional 99.8 2.1E-18 4.5E-23 160.9 19.4 138 75-217 59-248 (493)
7 COG2140 Thermophilic glucose-6 99.8 4.8E-18 1E-22 141.6 13.2 150 59-219 49-200 (209)
8 PF07883 Cupin_2: Cupin domain 99.6 7.9E-15 1.7E-19 101.9 6.9 70 101-175 2-71 (71)
9 COG0662 {ManC} Mannose-6-phosp 99.5 2.2E-13 4.8E-18 106.4 11.7 83 95-182 34-116 (127)
10 PRK13290 ectC L-ectoine syntha 99.5 2.5E-13 5.4E-18 106.0 11.6 80 95-182 33-114 (125)
11 COG1917 Uncharacterized conser 99.5 4.1E-13 8.9E-18 104.8 11.2 84 89-177 35-118 (131)
12 PRK04190 glucose-6-phosphate i 99.3 2.3E-11 4.9E-16 101.4 13.4 87 92-178 63-157 (191)
13 PRK09943 DNA-binding transcrip 99.3 1.7E-11 3.6E-16 101.3 11.8 76 96-177 106-182 (185)
14 COG3837 Uncharacterized conser 99.3 1.1E-11 2.3E-16 99.0 9.9 92 88-186 35-129 (161)
15 PRK11171 hypothetical protein; 99.3 6.3E-11 1.4E-15 103.5 15.4 77 94-175 58-135 (266)
16 TIGR01479 GMP_PMI mannose-1-ph 99.3 1.8E-11 3.8E-16 114.8 12.0 78 96-178 375-452 (468)
17 PRK15460 cpsB mannose-1-phosph 99.3 2.2E-11 4.8E-16 114.2 12.1 78 96-178 384-461 (478)
18 PF01050 MannoseP_isomer: Mann 99.2 1E-10 2.2E-15 94.1 11.0 78 96-178 62-139 (151)
19 COG4101 Predicted mannose-6-ph 99.2 9E-11 1.9E-15 89.7 9.7 84 96-181 45-128 (142)
20 TIGR03214 ura-cupin putative a 99.2 2.6E-10 5.7E-15 99.3 11.8 75 96-175 57-132 (260)
21 PRK11171 hypothetical protein; 99.1 3.6E-10 7.8E-15 98.8 10.8 76 96-176 183-258 (266)
22 TIGR03214 ura-cupin putative a 99.1 3.8E-10 8.2E-15 98.3 10.8 75 96-175 178-252 (260)
23 PF02041 Auxin_BP: Auxin bindi 99.0 7.6E-09 1.7E-13 82.1 10.7 93 96-189 43-140 (167)
24 PRK13264 3-hydroxyanthranilate 98.8 5.8E-08 1.3E-12 79.7 9.4 71 100-174 37-107 (177)
25 TIGR03037 anthran_nbaC 3-hydro 98.7 1E-07 2.2E-12 77.1 9.8 66 105-174 36-101 (159)
26 PF02311 AraC_binding: AraC-li 98.7 6.2E-08 1.3E-12 73.6 7.1 66 106-177 12-77 (136)
27 PF06560 GPI: Glucose-6-phosph 98.7 2.8E-07 6.1E-12 76.2 11.3 86 93-178 46-147 (182)
28 PRK15457 ethanolamine utilizat 98.6 5E-07 1.1E-11 76.9 11.3 72 96-177 156-227 (233)
29 PF11699 CENP-C_C: Mif2/CENP-C 98.6 3.7E-07 8E-12 66.6 8.6 73 96-174 11-84 (85)
30 TIGR02451 anti_sig_ChrR anti-s 98.6 2.6E-07 5.6E-12 78.5 8.0 73 97-179 127-199 (215)
31 PRK10371 DNA-binding transcrip 98.5 3.9E-07 8.5E-12 80.8 8.8 60 101-166 30-89 (302)
32 PF03079 ARD: ARD/ARD' family; 98.4 1.9E-06 4.1E-11 69.8 9.8 66 110-176 85-150 (157)
33 PF12973 Cupin_7: ChrR Cupin-l 98.4 3.8E-07 8.3E-12 66.9 5.2 66 96-173 23-88 (91)
34 COG1791 Uncharacterized conser 98.3 6.9E-06 1.5E-10 66.7 9.7 73 111-185 89-161 (181)
35 PF06339 Ectoine_synth: Ectoin 98.3 1.2E-05 2.7E-10 62.3 10.3 84 93-182 31-114 (126)
36 PRK10296 DNA-binding transcrip 98.3 6.8E-06 1.5E-10 71.3 10.2 52 107-164 33-84 (278)
37 PRK13501 transcriptional activ 98.2 3.7E-06 8.1E-11 73.6 8.1 56 105-166 26-81 (290)
38 PRK13500 transcriptional activ 98.2 8.5E-06 1.9E-10 72.4 8.9 56 105-166 56-111 (312)
39 PRK13503 transcriptional activ 98.2 5.1E-06 1.1E-10 71.8 7.2 55 105-165 23-77 (278)
40 COG3257 GlxB Uncharacterized p 98.1 1.8E-05 3.9E-10 66.8 9.7 75 97-176 61-136 (264)
41 TIGR02297 HpaA 4-hydroxyphenyl 98.1 7.2E-06 1.6E-10 71.2 7.6 61 107-172 33-93 (287)
42 PF05523 FdtA: WxcM-like, C-te 98.1 1.1E-05 2.4E-10 63.3 7.8 93 78-175 15-110 (131)
43 TIGR02272 gentisate_1_2 gentis 98.1 7.9E-06 1.7E-10 73.6 7.1 75 96-176 80-155 (335)
44 COG4297 Uncharacterized protei 98.1 6.8E-06 1.5E-10 64.6 5.6 66 107-175 52-118 (163)
45 PRK13502 transcriptional activ 98.1 1.9E-05 4E-10 68.6 8.5 57 104-166 25-81 (282)
46 COG3435 Gentisate 1,2-dioxygen 97.9 3.2E-05 6.9E-10 68.2 6.3 115 58-177 44-167 (351)
47 PF05899 Cupin_3: Protein of u 97.9 3.3E-05 7.2E-10 54.7 5.3 60 97-163 7-66 (74)
48 KOG2107 Uncharacterized conser 97.8 4.9E-05 1.1E-09 61.5 6.1 58 110-168 86-143 (179)
49 PF06052 3-HAO: 3-hydroxyanthr 97.8 0.00026 5.6E-09 56.6 9.9 79 99-181 35-113 (151)
50 PF06249 EutQ: Ethanolamine ut 97.8 8.7E-05 1.9E-09 59.7 6.8 70 97-176 77-146 (152)
51 PF14499 DUF4437: Domain of un 97.7 5.6E-05 1.2E-09 65.6 5.3 72 96-172 35-106 (251)
52 COG4766 EutQ Ethanolamine util 97.7 0.00041 8.9E-09 55.5 9.3 70 96-175 99-168 (176)
53 TIGR02272 gentisate_1_2 gentis 97.6 0.00025 5.5E-09 64.0 8.7 87 78-174 232-319 (335)
54 PF05995 CDO_I: Cysteine dioxy 97.2 0.0093 2E-07 49.0 12.5 86 96-181 74-168 (175)
55 COG3435 Gentisate 1,2-dioxygen 97.1 0.0015 3.3E-08 57.7 7.0 92 75-174 240-331 (351)
56 COG3450 Predicted enzyme of th 96.9 0.0024 5.2E-08 49.2 5.9 60 97-163 45-104 (116)
57 COG1898 RfbC dTDP-4-dehydrorha 96.8 0.0089 1.9E-07 49.2 8.6 75 106-180 54-140 (173)
58 TIGR01221 rmlC dTDP-4-dehydror 96.4 0.018 4E-07 47.5 8.2 77 105-182 52-139 (176)
59 PF00908 dTDP_sugar_isom: dTDP 96.4 0.035 7.6E-07 45.8 9.8 77 105-181 51-138 (176)
60 PF04209 HgmA: homogentisate 1 96.3 0.046 1E-06 50.9 10.7 54 114-174 142-195 (424)
61 PRK10572 DNA-binding transcrip 96.2 0.02 4.3E-07 49.9 7.5 49 112-166 44-92 (290)
62 PF13621 Cupin_8: Cupin-like d 96.1 0.035 7.5E-07 46.7 8.2 69 99-168 132-236 (251)
63 PF12852 Cupin_6: Cupin 96.0 0.041 8.9E-07 45.0 8.1 44 119-165 36-79 (186)
64 COG3257 GlxB Uncharacterized p 95.9 0.036 7.7E-07 47.2 7.3 75 94-174 179-254 (264)
65 PF07385 DUF1498: Protein of u 95.7 0.05 1.1E-06 46.4 7.7 74 100-175 90-186 (225)
66 PRK05341 homogentisate 1,2-dio 95.7 0.099 2.1E-06 48.8 10.0 57 112-174 148-204 (438)
67 PF08007 Cupin_4: Cupin superf 95.7 0.092 2E-06 47.0 9.6 66 99-165 115-200 (319)
68 TIGR01015 hmgA homogentisate 1 95.4 0.14 3E-06 47.7 10.1 55 112-173 142-196 (429)
69 PRK09685 DNA-binding transcrip 95.3 0.12 2.6E-06 45.0 9.0 65 97-166 45-114 (302)
70 PF13759 2OG-FeII_Oxy_5: Putat 95.3 0.051 1.1E-06 40.2 5.7 74 102-175 5-100 (101)
71 PF02678 Pirin: Pirin; InterP 95.3 0.083 1.8E-06 40.1 6.8 64 107-174 39-105 (107)
72 PF05118 Asp_Arg_Hydrox: Aspar 95.2 0.048 1E-06 44.2 5.7 71 98-173 81-156 (163)
73 PF14499 DUF4437: Domain of un 95.1 0.014 3E-07 50.8 2.3 76 97-177 171-246 (251)
74 PLN02658 homogentisate 1,2-dio 95.1 0.2 4.4E-06 46.7 9.9 55 113-173 142-196 (435)
75 COG3822 ABC-type sugar transpo 95.1 0.13 2.7E-06 43.0 7.7 68 100-167 89-179 (225)
76 TIGR02466 conserved hypothetic 95.0 0.12 2.7E-06 43.5 7.6 79 98-176 97-197 (201)
77 COG3806 ChrR Transcriptional a 95.0 0.12 2.5E-06 43.4 7.3 89 75-178 111-199 (216)
78 KOG3995 3-hydroxyanthranilate 95.0 0.057 1.2E-06 45.7 5.5 58 104-163 40-97 (279)
79 PRK00924 5-keto-4-deoxyuronate 94.7 0.21 4.5E-06 44.1 8.7 82 96-179 174-261 (276)
80 PF07847 DUF1637: Protein of u 94.7 0.14 3.1E-06 43.0 7.3 84 94-178 41-144 (200)
81 PRK12335 tellurite resistance 94.6 0.18 3.9E-06 44.3 8.1 62 105-166 19-83 (287)
82 COG1741 Pirin-related protein 94.1 0.24 5.3E-06 43.7 7.7 71 101-175 48-122 (276)
83 PRK15131 mannose-6-phosphate i 93.7 0.41 9E-06 44.2 8.8 58 97-162 321-378 (389)
84 PRK10579 hypothetical protein; 93.6 1.7 3.6E-05 32.3 10.2 54 116-174 39-92 (94)
85 COG3508 HmgA Homogentisate 1,2 93.6 0.91 2E-05 41.4 10.5 57 111-173 139-195 (427)
86 PF14525 AraC_binding_2: AraC- 93.6 0.87 1.9E-05 35.6 9.5 65 97-166 34-98 (172)
87 TIGR00218 manA mannose-6-phosp 93.5 0.53 1.1E-05 41.8 9.0 59 96-162 234-292 (302)
88 PF06865 DUF1255: Protein of u 93.4 0.85 1.8E-05 33.9 8.4 65 103-175 29-93 (94)
89 PF02373 JmjC: JmjC domain, hy 93.4 0.21 4.6E-06 37.0 5.4 30 139-168 79-108 (114)
90 PF05726 Pirin_C: Pirin C-term 93.1 0.39 8.5E-06 35.8 6.4 69 100-176 2-70 (104)
91 PLN02288 mannose-6-phosphate i 92.8 0.33 7.2E-06 45.0 6.7 58 96-157 333-390 (394)
92 PF09313 DUF1971: Domain of un 92.7 1.4 3E-05 31.9 8.5 59 108-166 14-75 (82)
93 PF11142 DUF2917: Protein of u 92.5 0.68 1.5E-05 31.7 6.3 57 102-163 2-58 (63)
94 KOG3706 Uncharacterized conser 91.6 0.14 3E-06 48.3 2.8 63 102-165 321-405 (629)
95 KOG2757 Mannose-6-phosphate is 90.9 1 2.3E-05 41.1 7.5 72 96-174 332-404 (411)
96 COG5553 Predicted metal-depend 90.5 1.3 2.9E-05 36.1 7.0 77 97-175 73-155 (191)
97 PF06172 Cupin_5: Cupin superf 89.7 5.8 0.00013 31.4 10.1 78 97-175 41-125 (139)
98 COG2850 Uncharacterized conser 89.4 0.48 1E-05 43.3 4.1 63 103-166 125-204 (383)
99 COG1482 ManA Phosphomannose is 89.2 2.7 5.8E-05 37.8 8.7 59 96-162 241-299 (312)
100 PRK00924 5-keto-4-deoxyuronate 88.8 3.3 7.1E-05 36.6 8.8 54 118-176 73-129 (276)
101 PF04962 KduI: KduI/IolB famil 87.9 3 6.6E-05 36.5 8.1 69 97-173 27-104 (261)
102 PRK09391 fixK transcriptional 86.3 7.7 0.00017 32.6 9.5 76 97-173 36-112 (230)
103 PRK11753 DNA-binding transcrip 86.2 7.8 0.00017 31.5 9.3 52 100-152 21-73 (211)
104 PF00027 cNMP_binding: Cyclic 85.4 2.4 5.2E-05 29.1 5.1 34 118-151 17-51 (91)
105 PF04962 KduI: KduI/IolB famil 84.7 4.8 0.0001 35.2 7.6 97 79-179 135-247 (261)
106 PHA02984 hypothetical protein; 82.4 11 0.00025 33.1 8.8 55 119-175 92-148 (286)
107 PHA02890 hypothetical protein; 80.4 15 0.00032 32.2 8.7 67 119-190 91-160 (278)
108 PRK13918 CRP/FNR family transc 80.2 7.1 0.00015 31.6 6.7 53 101-153 8-62 (202)
109 PHA00672 hypothetical protein 78.7 13 0.00029 29.2 7.2 69 95-170 45-113 (152)
110 PRK03606 ureidoglycolate hydro 78.1 14 0.00031 30.0 7.7 64 111-174 72-140 (162)
111 cd00038 CAP_ED effector domain 77.7 9.7 0.00021 26.6 6.1 51 100-151 18-69 (115)
112 COG3717 KduI 5-keto 4-deoxyuro 76.7 13 0.00028 32.3 7.2 83 96-180 176-264 (278)
113 COG3718 IolB Uncharacterized e 76.6 39 0.00085 29.4 10.1 84 80-167 15-103 (270)
114 PF04115 Ureidogly_hydro: Urei 76.1 14 0.00031 29.9 7.2 64 113-176 75-145 (165)
115 KOG2130 Phosphatidylserine-spe 75.6 4.6 9.9E-05 36.5 4.4 47 139-185 261-307 (407)
116 PLN02868 acyl-CoA thioesterase 75.3 11 0.00023 34.9 7.1 52 100-152 32-83 (413)
117 PF04622 ERG2_Sigma1R: ERG2 an 74.6 8 0.00017 33.0 5.5 91 109-210 113-205 (216)
118 COG3123 Uncharacterized protei 74.3 12 0.00026 27.3 5.5 43 117-162 40-82 (94)
119 PRK10202 ebgC cryptic beta-D-g 74.0 35 0.00075 27.2 8.9 52 111-162 58-127 (149)
120 smart00100 cNMP Cyclic nucleot 73.8 18 0.00038 25.3 6.6 53 100-153 18-71 (120)
121 COG1482 ManA Phosphomannose is 72.6 3.1 6.8E-05 37.4 2.7 23 141-163 158-180 (312)
122 PRK15131 mannose-6-phosphate i 71.9 4.1 8.9E-05 37.7 3.4 24 140-163 236-259 (389)
123 TIGR00218 manA mannose-6-phosp 71.8 2.2 4.8E-05 37.8 1.6 20 142-161 152-171 (302)
124 PF06719 AraC_N: AraC-type tra 71.1 18 0.00039 28.7 6.6 52 119-175 24-78 (155)
125 PRK15186 AraC family transcrip 70.1 14 0.0003 32.8 6.2 46 119-168 39-84 (291)
126 PF13640 2OG-FeII_Oxy_3: 2OG-F 69.9 11 0.00023 27.0 4.7 70 102-171 4-93 (100)
127 PRK10402 DNA-binding transcrip 68.2 18 0.00039 30.1 6.3 52 101-153 33-85 (226)
128 PF04074 DUF386: Domain of unk 62.2 76 0.0017 25.0 9.0 53 110-162 61-134 (153)
129 PRK11161 fumarate/nitrate redu 62.0 74 0.0016 26.3 8.9 50 103-153 41-91 (235)
130 COG2731 EbgC Beta-galactosidas 60.7 50 0.0011 26.7 7.2 58 109-166 60-137 (154)
131 PRK09392 ftrB transcriptional 59.8 46 0.00099 27.6 7.3 51 101-152 32-82 (236)
132 COG1741 Pirin-related protein 58.5 1.3E+02 0.0029 26.6 10.9 76 88-174 165-240 (276)
133 COG0664 Crp cAMP-binding prote 58.3 38 0.00082 26.8 6.3 54 100-154 24-78 (214)
134 KOG1417 Homogentisate 1,2-diox 58.2 1.1E+02 0.0023 27.8 9.3 62 111-177 148-209 (446)
135 PLN02288 mannose-6-phosphate i 56.1 9.3 0.0002 35.5 2.6 22 142-163 252-273 (394)
136 PF13994 PgaD: PgaD-like prote 55.9 14 0.0003 29.0 3.2 24 195-218 100-123 (138)
137 TIGR03697 NtcA_cyano global ni 55.5 28 0.0006 27.7 5.1 35 118-152 11-46 (193)
138 PRK14584 hmsS hemin storage sy 54.2 15 0.00033 29.6 3.2 25 194-218 97-121 (153)
139 PRK14585 pgaD putative PGA bio 54.1 14 0.00031 29.2 2.9 25 194-218 88-112 (137)
140 PRK13395 ureidoglycolate hydro 54.0 74 0.0016 26.1 7.3 63 113-175 74-142 (171)
141 KOG4281 Uncharacterized conser 53.6 6.4 0.00014 33.6 1.0 40 96-135 74-113 (236)
142 TIGR00022 uncharacterized prot 52.4 54 0.0012 25.7 6.1 25 110-134 61-85 (142)
143 PF05962 HutD: HutD; InterPro 50.6 21 0.00045 29.4 3.6 34 117-155 134-167 (184)
144 KOG1633 F-box protein JEMMA an 50.0 25 0.00055 35.5 4.7 77 101-178 140-233 (776)
145 COG3717 KduI 5-keto 4-deoxyuro 48.9 86 0.0019 27.3 7.1 64 107-175 64-130 (278)
146 KOG3416 Predicted nucleic acid 47.6 58 0.0013 25.5 5.3 66 89-163 11-80 (134)
147 KOG1356 Putative transcription 47.3 3.6 7.7E-05 41.4 -1.7 59 103-166 761-824 (889)
148 PF02787 CPSase_L_D3: Carbamoy 45.3 22 0.00048 27.4 2.8 26 195-220 72-97 (123)
149 KOG2131 Uncharacterized conser 42.0 15 0.00032 33.9 1.5 26 142-167 269-294 (427)
150 PLN03192 Voltage-dependent pot 41.9 57 0.0012 33.0 5.8 52 99-151 397-448 (823)
151 PF13348 Y_phosphatase3C: Tyro 41.6 28 0.00061 23.4 2.6 23 197-219 45-67 (68)
152 PF14801 GCD14_N: tRNA methylt 39.8 61 0.0013 21.5 3.8 30 130-159 11-40 (54)
153 KOG0498 K+-channel ERG and rel 37.5 55 0.0012 32.9 4.8 48 103-151 446-493 (727)
154 PF01238 PMI_typeI: Phosphoman 33.7 28 0.00061 31.9 2.0 22 142-163 251-272 (373)
155 PF13464 DUF4115: Domain of un 33.6 1.6E+02 0.0034 20.2 7.4 47 124-171 4-51 (77)
156 PF13384 HTH_23: Homeodomain-l 33.2 48 0.001 20.5 2.5 26 195-220 17-42 (50)
157 KOG0501 K+-channel KCNQ [Inorg 32.7 65 0.0014 31.9 4.3 48 99-151 571-618 (971)
158 PRK05467 Fe(II)-dependent oxyg 32.3 1E+02 0.0022 26.4 5.1 23 142-164 142-164 (226)
159 PF05721 PhyH: Phytanoyl-CoA d 31.5 74 0.0016 24.9 4.0 28 140-167 179-207 (211)
160 PF07172 GRP: Glycine rich pro 27.9 51 0.0011 24.4 2.2 23 8-30 5-28 (95)
161 KOG2132 Uncharacterized conser 26.8 50 0.0011 30.1 2.3 76 88-164 241-349 (355)
162 PF12937 F-box-like: F-box-lik 24.9 87 0.0019 19.1 2.6 21 195-215 3-24 (47)
163 PF00325 Crp: Bacterial regula 23.8 85 0.0018 18.4 2.2 24 196-219 3-26 (32)
164 PRK02290 3-dehydroquinate synt 23.8 2.1E+02 0.0045 26.2 5.7 85 76-164 250-337 (344)
165 PF01987 AIM24: Mitochondrial 23.4 1.4E+02 0.0031 24.6 4.4 43 120-163 131-173 (215)
166 PF00166 Cpn10: Chaperonin 10 23.2 2.2E+02 0.0048 20.5 4.9 34 127-163 43-76 (93)
167 PF09923 DUF2155: Uncharacteri 22.9 2E+02 0.0044 21.0 4.6 61 137-197 10-76 (90)
168 PF13613 HTH_Tnp_4: Helix-turn 21.0 1.1E+02 0.0023 19.6 2.5 24 195-218 19-42 (53)
169 smart00153 VHP Villin headpiec 20.7 89 0.0019 18.9 1.9 21 196-216 2-22 (36)
170 COG3128 PiuC Uncharacterized i 20.4 2.1E+02 0.0046 24.2 4.7 23 142-164 145-167 (229)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.95 E-value=1e-26 Score=210.86 Aligned_cols=162 Identities=22% Similarity=0.337 Sum_probs=144.1
Q ss_pred cccCCCcccccCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEE
Q 027585 50 FPCKLAAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKL 129 (221)
Q Consensus 50 ~~ck~p~~~~~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~ 129 (221)
.+-+.+....++.|+|+....+. ....||+++.+++.+||+++ ++++++++++||++.++|||++++|++||++|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~ 277 (367)
T TIGR03404 201 EAVTGPAGEVPGPFTYHLSEQKP-KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQA 277 (367)
T ss_pred ccCcCCCCCCCccEEEEhhhCCc-eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEE
Confidence 34445566666779999655544 45677889999999999988 4899999999999999999999999999999999
Q ss_pred EEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCH
Q 027585 130 LVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDD 209 (221)
Q Consensus 130 ~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~ 209 (221)
++++.+.+|+.+++.+++||+++||+|..|+++|.|+++++++++|++..++.+.+++|+.. +|++||+++|+++.
T Consensus 278 ~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~~----~p~~vl~~~~~~~~ 353 (367)
T TIGR03404 278 RMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLAL----TPPQLVAAHLNLDD 353 (367)
T ss_pred EEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHhh----CCHHHHHHHhCcCH
Confidence 99998877777789999999999999999999999999999999999999999999999844 99999999999999
Q ss_pred HHHHHHHhh
Q 027585 210 DLISTIKSK 218 (221)
Q Consensus 210 ~~v~~l~~~ 218 (221)
+++++|++.
T Consensus 354 ~~~~~l~~~ 362 (367)
T TIGR03404 354 EVIDSLKKE 362 (367)
T ss_pred HHHHhcccc
Confidence 999999864
No 2
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.91 E-value=4e-23 Score=187.41 Aligned_cols=137 Identities=23% Similarity=0.322 Sum_probs=122.3
Q ss_pred cccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEE
Q 027585 74 TTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVI 153 (221)
Q Consensus 74 ~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~ 153 (221)
+...|++++.++..+||++++ +++.++++.||+..++|||.. .|++||++|++++++.+++|+.+.+.|++||+++|
T Consensus 46 ~~~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~~-~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~f 122 (367)
T TIGR03404 46 RLENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHKE-AEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYF 122 (367)
T ss_pred ccccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCCC-ceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEE
Confidence 345688999999999999985 799999999999999999965 89999999999999999888888889999999999
Q ss_pred CCCCeEEEEecCCccEEEEEEEcCCC---CeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 027585 154 PRGLIHFQQNVGEGKALAFTAFNSHL---PGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSK 218 (221)
Q Consensus 154 P~g~~H~~~N~g~~~a~~l~~~~s~~---pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~ 218 (221)
|+|.+|+++|.+ +.++++.++++.. +..+.+++++ ++ +|++||+|+|++|++++++|++.
T Consensus 123 P~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~l-~~---~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 123 PPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDWL-AH---TPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred CCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHHH-Hh---CCHHHHHHHhCCCHHHHHhcccc
Confidence 999999999984 5688888887764 5577787875 75 99999999999999999999864
No 3
>PLN00212 glutelin; Provisional
Probab=99.90 E-value=1.6e-22 Score=188.32 Aligned_cols=145 Identities=17% Similarity=0.308 Sum_probs=128.3
Q ss_pred CCc-ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC-CeEEEEEecCCc
Q 027585 72 GNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-NVFYSKVLSAGE 149 (221)
Q Consensus 72 ~~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~L~~GD 149 (221)
.++ ++.+++++.++..++|+|+++++++.+++|.||++.+||||++|.|++||++|++++++++.+ ++++..+|++||
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd 401 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ 401 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence 345 889999999999999999999999999999999999999999999999999999999999877 588999999999
Q ss_pred EEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhhC
Q 027585 150 MFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVP--TTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFG 220 (221)
Q Consensus 150 v~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~~~ 220 (221)
+++||+|.+|.... +++...+++..++.++-...++ .++|++ ||.+||+++|+++.+++++||..+.
T Consensus 402 vfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n~~ 470 (493)
T PLN00212 402 LLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNNRG 470 (493)
T ss_pred EEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhccc
Confidence 99999999998766 4666888887766664333333 678886 9999999999999999999998753
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.87 E-value=5.4e-22 Score=157.84 Aligned_cols=132 Identities=31% Similarity=0.509 Sum_probs=109.8
Q ss_pred cCCCCc-ccCCeeEEEeeccccCCCcccc-eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-----eEE
Q 027585 69 SKEGNT-TIFGSAVTPANVLAFPGVNTLG-ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-----VFY 141 (221)
Q Consensus 69 ~~~~~~-~~~g~~v~~~~~~~fP~l~~~g-is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-----~~~ 141 (221)
..+.+. ...+|.++.++..++|.+.+.. +.+.+..++||++..|||| ++.|+.||++|++++++..+++ +..
T Consensus 4 ~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~ 82 (144)
T PF00190_consen 4 REPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDF 82 (144)
T ss_dssp CSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEE
T ss_pred CCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceee
Confidence 345555 7789999999999999655544 5566677799999999999 8999999999999999998765 355
Q ss_pred EEE--ecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHH
Q 027585 142 SKV--LSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLIS 213 (221)
Q Consensus 142 ~~~--L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~ 213 (221)
..+ +++||++++|+|.+||+.|.++++...+.++...+|... +|+|+++++|+++.++++
T Consensus 83 ~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~~ 144 (144)
T PF00190_consen 83 SQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEVQ 144 (144)
T ss_dssp EEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHHB
T ss_pred eceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcCC
Confidence 666 999999999999999999999888888888877777543 899999999999998863
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.85 E-value=9.6e-20 Score=145.20 Aligned_cols=134 Identities=36% Similarity=0.620 Sum_probs=116.1
Q ss_pred ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC-CeEEEEEecCCcEEEE
Q 027585 75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-NVFYSKVLSAGEMFVI 153 (221)
Q Consensus 75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~L~~GDv~~~ 153 (221)
+..||.++.++...+|.+++.++.+.+++++||+..++|+|++..|++||++|++++.+.++. ++...+.+++||++++
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV 87 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence 567888999999999999999999999999999999999998779999999999999998763 4566899999999999
Q ss_pred CCCCeEEEEecCCccEEEEEEEcCCCCeee---eccchhhcCCCCCCHHHHHhhcCCCHHHH
Q 027585 154 PRGLIHFQQNVGEGKALAFTAFNSHLPGAV---IVPTTLFASTPSVPNQVLTKTFQVDDDLI 212 (221)
Q Consensus 154 P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~---~~~~~lf~~~p~~~~~vla~~f~l~~~~v 212 (221)
|+|..|++.|.+++++++++ +.+++|... .-..++|.. +++++++++|+++++++
T Consensus 88 p~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 88 PQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLRG---LPPEVLAAAFGVSAEEV 145 (146)
T ss_pred CCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhhc---CCHHHHHHHhCcChHHc
Confidence 99999999999999999995 555665532 222466775 99999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.81 E-value=2.1e-18 Score=160.91 Aligned_cols=138 Identities=14% Similarity=0.256 Sum_probs=115.0
Q ss_pred ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-----eE---------
Q 027585 75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-----VF--------- 140 (221)
Q Consensus 75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-----~~--------- 140 (221)
...||.+..++ ..-+.+...|+++.|++++|++...||+| ++.+++||++|++.+++..++- +.
T Consensus 59 ~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~ 136 (493)
T PLN00212 59 RSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQ 136 (493)
T ss_pred cccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccc
Confidence 56777777777 55789999999999999999999999999 5799999999999999996420 10
Q ss_pred -----------EEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCe--------eeecc---------------
Q 027585 141 -----------YSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPG--------AVIVP--------------- 186 (221)
Q Consensus 141 -----------~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg--------~~~~~--------------- 186 (221)
..+.|++||++.+|+|+.||++|.|+++++++++++..++. .+.++
T Consensus 137 ~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~ 216 (493)
T PLN00212 137 SQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIE 216 (493)
T ss_pred ccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCcccccccccccc
Confidence 12699999999999999999999999999988888655432 33333
Q ss_pred ----chhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 027585 187 ----TTLFASTPSVPNQVLTKTFQVDDDLISTIKS 217 (221)
Q Consensus 187 ----~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~ 217 (221)
.++|+. +++++|++||+++.++++||+.
T Consensus 217 ~~~~~nifsG---F~~e~La~Afnv~~e~~~klq~ 248 (493)
T PLN00212 217 QHSGQNIFSG---FSTELLSEALGINAQVAKRLQS 248 (493)
T ss_pred ccccCchhhc---CCHHHHHHHHCCCHHHHHHHhc
Confidence 238885 9999999999999999999974
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.77 E-value=4.8e-18 Score=141.62 Aligned_cols=150 Identities=20% Similarity=0.279 Sum_probs=131.0
Q ss_pred ccCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcE--EEEEEeCEEEEEEEec
Q 027585 59 TSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASE--SGIVIKGKLLVGFFTT 136 (221)
Q Consensus 59 ~~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~E--i~yVl~G~~~v~~~~~ 136 (221)
..+||+|..+.... ...|+.+....+..+|+-. -..+.+.||++...||||+++| +.||++|++++.+.++
T Consensus 49 ~~~~~~yel~~~~~--~~~~g~L~~~~t~~~pGs~-----g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~ 121 (209)
T COG2140 49 KEDDFVYELLESEP--GERGGDLRLDVTRIFPGSA-----GAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKP 121 (209)
T ss_pred CCCceEEEeecccc--cccCCeEEEEeeccCCCcc-----ceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcC
Confidence 67889998654421 2238899999999999863 4678899999999999999999 9999999999999999
Q ss_pred CCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 027585 137 NNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIK 216 (221)
Q Consensus 137 ~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~ 216 (221)
+|+..+..+++||++++|++..|+..|+|++|++++.++....+..+....++++ ++..+++..++.+.+..+.++
T Consensus 122 ~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~D~p~ 197 (209)
T COG2140 122 EGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYVDVPR 197 (209)
T ss_pred CCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCcccccCcc
Confidence 9999999999999999999999999999999999999999999999999888866 788899999988887777665
Q ss_pred hhh
Q 027585 217 SKF 219 (221)
Q Consensus 217 ~~~ 219 (221)
.++
T Consensus 198 ~~~ 200 (209)
T COG2140 198 IKF 200 (209)
T ss_pred ccc
Confidence 544
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.56 E-value=7.9e-15 Score=101.86 Aligned_cols=70 Identities=30% Similarity=0.458 Sum_probs=65.4
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 101 RVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 101 ~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
+++++||+..++|+|+...|++||++|++++.++++ .+.+++||.+++|++..|.+.|.+++++++++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE-----RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE-----EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE-----EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 578999999999999985599999999999997776 9999999999999999999999999999999875
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=2.2e-13 Score=106.39 Aligned_cols=83 Identities=23% Similarity=0.225 Sum_probs=76.3
Q ss_pred cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585 95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 174 (221)
...++.++.+.||+...+|.|.+.+|++||++|++.+.++++ ...|++||++++|+|..|+..|.|..++.++.+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~-----~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei 108 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE-----EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV 108 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence 357899999999999999888888999999999999999987 999999999999999999999999999999999
Q ss_pred EcCCCCee
Q 027585 175 FNSHLPGA 182 (221)
Q Consensus 175 ~~s~~pg~ 182 (221)
......+.
T Consensus 109 ~~p~~~~e 116 (127)
T COG0662 109 QSPPYLGE 116 (127)
T ss_pred ecCCcCCC
Confidence 87766554
No 10
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.51 E-value=2.5e-13 Score=106.04 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=72.1
Q ss_pred cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEE-EE-ecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585 95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVG-FF-TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF 172 (221)
Q Consensus 95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~-~~-~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 172 (221)
.++++.+++++||+..+.|+|+. .|++||++|++++. ++ ++ ++.|++||++++|++.+|++.|. ++++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l 104 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDKHDRHYLRAG--EDMRLV 104 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECCCCcEEEEcC--CCEEEE
Confidence 35789999999999999999977 79999999999999 64 76 99999999999999999999997 899999
Q ss_pred EEEcCCCCee
Q 027585 173 TAFNSHLPGA 182 (221)
Q Consensus 173 ~~~~s~~pg~ 182 (221)
++++.+.+|.
T Consensus 105 ~v~tP~~~~~ 114 (125)
T PRK13290 105 CVFNPPLTGR 114 (125)
T ss_pred EEECCCCCCc
Confidence 9998766654
No 11
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.48 E-value=4.1e-13 Score=104.82 Aligned_cols=84 Identities=27% Similarity=0.450 Sum_probs=73.0
Q ss_pred cCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCcc
Q 027585 89 FPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGK 168 (221)
Q Consensus 89 fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~ 168 (221)
.+...+..+.+.++.++||+..++|+||...+.+||++|+++++++++ .+.+++||++++|+|..|++.|.++.+
T Consensus 35 ~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~-----~~~l~~Gd~i~ip~g~~H~~~a~~~~~ 109 (131)
T COG1917 35 LPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGE-----KKELKAGDVIIIPPGVVHGLKAVEDEP 109 (131)
T ss_pred ccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCC-----ceEecCCCEEEECCCCeeeeccCCCCc
Confidence 333344457899999999999999999944899999999999999977 999999999999999999999999887
Q ss_pred EEEEEEEcC
Q 027585 169 ALAFTAFNS 177 (221)
Q Consensus 169 a~~l~~~~s 177 (221)
...++++..
T Consensus 110 ~~~l~v~~~ 118 (131)
T COG1917 110 MVLLLVFPL 118 (131)
T ss_pred eeEEEEeee
Confidence 677777655
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.34 E-value=2.3e-11 Score=101.43 Aligned_cols=87 Identities=17% Similarity=0.220 Sum_probs=76.1
Q ss_pred CcccceEEEEEEEcCCCc------CCCCCCCCC--cEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585 92 VNTLGISMNRVDFAPGGL------NPPHSHPRA--SESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN 163 (221)
Q Consensus 92 l~~~gis~~~v~l~Pgg~------~~~H~Hp~a--~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 163 (221)
....++.+....+.||.. .+.|+|+.. .|+.||++|++.+.+.+.+|......+++||+++||+|..|...|
T Consensus 63 ~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN 142 (191)
T PRK04190 63 ETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVN 142 (191)
T ss_pred CcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEE
Confidence 445568899999999996 567999754 599999999999999887766668999999999999999999999
Q ss_pred cCCccEEEEEEEcCC
Q 027585 164 VGEGKALAFTAFNSH 178 (221)
Q Consensus 164 ~g~~~a~~l~~~~s~ 178 (221)
.|++++++++++...
T Consensus 143 ~G~epl~fl~v~p~~ 157 (191)
T PRK04190 143 TGDEPLVFLACYPAD 157 (191)
T ss_pred CCCCCEEEEEEEcCC
Confidence 999999999988654
No 13
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.33 E-value=1.7e-11 Score=101.33 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=67.6
Q ss_pred ceEEEEEEEcCCCcC-CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585 96 GISMNRVDFAPGGLN-PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 96 gis~~~v~l~Pgg~~-~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 174 (221)
.+.+....++||+.. +.|+|++ .|++||++|++++.++++ .+.|++||+++||++.+|.+.|.++++++++++
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h~~-~E~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKHQG-EEIGTVLEGEIVLTINGQ-----DYHLVAGQSYAINTGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred eeEEEEEEccCCCCcccccccCC-cEEEEEEEeEEEEEECCE-----EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEE
Confidence 466777889999864 4677776 999999999999999887 999999999999999999999999999999998
Q ss_pred EcC
Q 027585 175 FNS 177 (221)
Q Consensus 175 ~~s 177 (221)
...
T Consensus 180 ~~p 182 (185)
T PRK09943 180 HTP 182 (185)
T ss_pred eCC
Confidence 753
No 14
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.33 E-value=1.1e-11 Score=99.00 Aligned_cols=92 Identities=17% Similarity=0.142 Sum_probs=77.8
Q ss_pred ccCCCcccceEEEEEEEcCCCc-CCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCC--CeEEEEec
Q 027585 88 AFPGVNTLGISMNRVDFAPGGL-NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRG--LIHFQQNV 164 (221)
Q Consensus 88 ~fP~l~~~gis~~~v~l~Pgg~-~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g--~~H~~~N~ 164 (221)
.+-||.. +.+....++||+. ...|||...+|++|||+|++++.+++. ++.|++||++-||+| ..|.++|.
T Consensus 35 ~~~Gl~~--fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~-----e~~lrpGD~~gFpAG~~~aHhliN~ 107 (161)
T COG3837 35 DALGLKR--FGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG-----ETRLRPGDSAGFPAGVGNAHHLINR 107 (161)
T ss_pred hhcChhh--cccceEEeCCCCccccccccccCceEEEEEcCceEEEECCe-----eEEecCCceeeccCCCcceeEEeec
Confidence 3446664 4456677899985 688999988999999999999999988 999999999999999 99999999
Q ss_pred CCccEEEEEEEcCCCCeeeecc
Q 027585 165 GEGKALAFTAFNSHLPGAVIVP 186 (221)
Q Consensus 165 g~~~a~~l~~~~s~~pg~~~~~ 186 (221)
++..+++|++-+...-....++
T Consensus 108 s~~~~~yL~vG~r~~~d~i~YP 129 (161)
T COG3837 108 SDVILRYLEVGTREPDDIITYP 129 (161)
T ss_pred CCceEEEEEeccccccceeecC
Confidence 9999999999876655555554
No 15
>PRK11171 hypothetical protein; Provisional
Probab=99.32 E-value=6.3e-11 Score=103.54 Aligned_cols=77 Identities=21% Similarity=0.190 Sum_probs=69.9
Q ss_pred ccceEEEEEEEcCCCcCCCCCCC-CCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585 94 TLGISMNRVDFAPGGLNPPHSHP-RASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF 172 (221)
Q Consensus 94 ~~gis~~~v~l~Pgg~~~~H~Hp-~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 172 (221)
..++.+.+++++||+....|.|+ +.+|++||++|++++.++++ ++.|++||+++||++..|.+.|.++++++++
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~-----~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l 132 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGK-----THALSEGGYAYLPPGSDWTLRNAGAEDARFH 132 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 34689999999999987777765 56899999999999999887 9999999999999999999999999999999
Q ss_pred EEE
Q 027585 173 TAF 175 (221)
Q Consensus 173 ~~~ 175 (221)
++.
T Consensus 133 ~v~ 135 (266)
T PRK11171 133 WIR 135 (266)
T ss_pred EEE
Confidence 986
No 16
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.31 E-value=1.8e-11 Score=114.77 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=73.0
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
++.+.+++++||+..+.|+|++..|.+||++|++++.++++ ++.|++||+++||+|.+|.+.|.|+++++++++.
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~-----~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE-----TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 57889999999999899998878999999999999999988 9999999999999999999999999999999998
Q ss_pred cCC
Q 027585 176 NSH 178 (221)
Q Consensus 176 ~s~ 178 (221)
+.+
T Consensus 450 ~~~ 452 (468)
T TIGR01479 450 SGS 452 (468)
T ss_pred cCC
Confidence 754
No 17
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.30 E-value=2.2e-11 Score=114.25 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=72.6
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
++.+.+++++||+....|+|...+|.+||++|++++.++++ ++.|++||+++||+|.+|+++|.|+++++++++.
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~-----~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~ 458 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD-----IKLLGENESIYIPLGATHCLENPGKIPLDLIEVR 458 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 57889999999998888888777899999999999999998 9999999999999999999999999999999998
Q ss_pred cCC
Q 027585 176 NSH 178 (221)
Q Consensus 176 ~s~ 178 (221)
...
T Consensus 459 ~g~ 461 (478)
T PRK15460 459 SGS 461 (478)
T ss_pred cCC
Confidence 654
No 18
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.23 E-value=1e-10 Score=94.11 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=73.2
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
+....++.+.||....+|.|....|.++|++|++.+.+++. .+.+++||++++|+|..|++.|.|+.+++++.+-
T Consensus 62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~-----~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq 136 (151)
T PF01050_consen 62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDE-----EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQ 136 (151)
T ss_pred CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCE-----EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEe
Confidence 56789999999999999999888999999999999999888 9999999999999999999999999999999987
Q ss_pred cCC
Q 027585 176 NSH 178 (221)
Q Consensus 176 ~s~ 178 (221)
...
T Consensus 137 ~G~ 139 (151)
T PF01050_consen 137 TGE 139 (151)
T ss_pred cCC
Confidence 654
No 19
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=9e-11 Score=89.71 Aligned_cols=84 Identities=24% Similarity=0.321 Sum_probs=75.5
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
++.+..++++||+....|.|.+.+-.+||++|+...++++. -.+..+..+||.++||+|++|.-.|.+++++..+.+.
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r--LE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaR 122 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR--LEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIAR 122 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc--eeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEc
Confidence 57889999999999999999987888999999999999764 3457789999999999999999999999999999988
Q ss_pred cCCCCe
Q 027585 176 NSHLPG 181 (221)
Q Consensus 176 ~s~~pg 181 (221)
+..++.
T Consensus 123 sDp~~~ 128 (142)
T COG4101 123 SDPNPQ 128 (142)
T ss_pred cCCCCC
Confidence 877764
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.18 E-value=2.6e-10 Score=99.34 Aligned_cols=75 Identities=21% Similarity=0.143 Sum_probs=67.7
Q ss_pred ceEEEEEEEcCCCcC-CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585 96 GISMNRVDFAPGGLN-PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 96 gis~~~v~l~Pgg~~-~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 174 (221)
.+.+..++++||+.. .+|+|++.+|++||++|++++.++++ ++.|++||.+++|++..|.+.|.++++++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~-----~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v 131 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE-----THELREGGYAYLPPGSKWTLANAQAEDARFFLY 131 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence 578999999998754 45667777899999999999999887 899999999999999999999999999999987
Q ss_pred E
Q 027585 175 F 175 (221)
Q Consensus 175 ~ 175 (221)
.
T Consensus 132 ~ 132 (260)
T TIGR03214 132 K 132 (260)
T ss_pred E
Confidence 6
No 21
>PRK11171 hypothetical protein; Provisional
Probab=99.14 E-value=3.6e-10 Score=98.77 Aligned_cols=76 Identities=17% Similarity=0.112 Sum_probs=68.0
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
++.+.+++++||+..+.|-|...+|.+||++|++++.++++ .+.|++||+++|+++.+|++.|.|+++++++..-
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~-----~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k 257 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNND-----WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYK 257 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEc
Confidence 36899999999999888534445999999999999999888 9999999999999999999999999999998765
Q ss_pred c
Q 027585 176 N 176 (221)
Q Consensus 176 ~ 176 (221)
+
T Consensus 258 ~ 258 (266)
T PRK11171 258 D 258 (266)
T ss_pred c
Confidence 4
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.14 E-value=3.8e-10 Score=98.35 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=66.7
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
++.+.+++++||+..+.|.|...+|.+||++|++.+..+++ .+.+++||++++|++.+|+++|.|+++.++|.--
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~-----~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~yk 252 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNN-----WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYK 252 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCE-----EEEecCCCEEEECCCCCEEEEecCCCcEEEEEEc
Confidence 46788899999999997544444899999999999999887 9999999999999999999999999999988643
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.97 E-value=7.6e-09 Score=82.12 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=63.4
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC----CeEEEEEecCCcEEEECCCCeEEEEecC-CccEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN----NVFYSKVLSAGEMFVIPRGLIHFQQNVG-EGKAL 170 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~----~~~~~~~L~~GDv~~~P~g~~H~~~N~g-~~~a~ 170 (221)
.+.+..-++.||...|.|.|.. +|+++|++|+++..+.... |+..++.+-+++.+.||.+..|...|++ .+++.
T Consensus 43 evEVwlQTfAPG~~TPiHRHsC-EEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq 121 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRHSC-EEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ 121 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEESS--EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred eeeEEeeeecCCCCCCCccccc-cEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence 3688999999999999999986 9999999999999998653 6777899999999999999999999999 58999
Q ss_pred EEEEEcCCCCeeeeccchh
Q 027585 171 AFTAFNSHLPGAVIVPTTL 189 (221)
Q Consensus 171 ~l~~~~s~~pg~~~~~~~l 189 (221)
++++++...-..+.+.+|.
T Consensus 122 vlViiSrpPvkvf~y~dw~ 140 (167)
T PF02041_consen 122 VLVIISRPPVKVFIYDDWS 140 (167)
T ss_dssp EEEEEESSS--EEEESSTT
T ss_pred EEEEecCCCeEEEEecccc
Confidence 9999987766777777764
No 24
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.76 E-value=5.8e-08 Score=79.66 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=57.8
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585 100 NRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 174 (221)
..+.-.||....+|+|+. +|++|+++|++++.+.+ +|+.....|++||++++|+|++|..... +..+.+.+
T Consensus 37 VmvvgGpn~r~d~H~~~t-dE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 37 VMVVGGPNARTDFHYDPG-EEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred EEEEccCCcccccccCCC-ceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 334447888899999986 99999999999999987 3544589999999999999999999763 44555554
No 25
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.73 E-value=1e-07 Score=77.11 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=54.4
Q ss_pred cCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585 105 APGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 105 ~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 174 (221)
.||....+|.|+. +|++|+++|++.+.+.+. |+.....|++||++++|+|++|.....++ ++.+.+
T Consensus 36 Gpn~R~d~H~~~t-dE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~--t~~LvI 101 (159)
T TIGR03037 36 GPNARTDFHDDPG-EEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAG--SIGLVI 101 (159)
T ss_pred CCCCCcccccCCC-ceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCC--cEEEEE
Confidence 6777788999985 999999999999998874 55558999999999999999999987533 444444
No 26
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.68 E-value=6.2e-08 Score=73.57 Aligned_cols=66 Identities=24% Similarity=0.218 Sum_probs=50.1
Q ss_pred CCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcC
Q 027585 106 PGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNS 177 (221)
Q Consensus 106 Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s 177 (221)
++...++|+|+. -|+.||++|++++.++++ .+.+++||++++|+|.+|.+...++++...+.+.-+
T Consensus 12 ~~~~~~~h~h~~-~~i~~v~~G~~~~~~~~~-----~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~ 77 (136)
T PF02311_consen 12 PNFEFPPHWHDF-YEIIYVLSGEGTLHIDGQ-----EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFS 77 (136)
T ss_dssp TT-SEEEETT-S-EEEEEEEEE-EEEEETTE-----EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE-
T ss_pred CCCccCCEECCC-EEEEEEeCCEEEEEECCE-----EEEEECCEEEEecCCccEEEecCCCCCEEEEEEEEC
Confidence 455668899997 999999999999999888 999999999999999999999988777777776543
No 27
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.68 E-value=2.8e-07 Score=76.24 Aligned_cols=86 Identities=19% Similarity=0.227 Sum_probs=58.8
Q ss_pred cccceEEEEEEEcCCCc------CCCCCCCC------CcEEEEEEeCEEEEEEEecCC----eEEEEEecCCcEEEECCC
Q 027585 93 NTLGISMNRVDFAPGGL------NPPHSHPR------ASESGIVIKGKLLVGFFTTNN----VFYSKVLSAGEMFVIPRG 156 (221)
Q Consensus 93 ~~~gis~~~v~l~Pgg~------~~~H~Hp~------a~Ei~yVl~G~~~v~~~~~~~----~~~~~~L~~GDv~~~P~g 156 (221)
...++......+.||.+ ..-|+|+. ..|+.+|++|++.+-+.+.++ +.+...+++||+++||++
T Consensus 46 ~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~ 125 (182)
T PF06560_consen 46 QKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPG 125 (182)
T ss_dssp ----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT
T ss_pred eeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCC
Confidence 34457777778888865 35599987 899999999999999998887 777899999999999999
Q ss_pred CeEEEEecCCccEEEEEEEcCC
Q 027585 157 LIHFQQNVGEGKALAFTAFNSH 178 (221)
Q Consensus 157 ~~H~~~N~g~~~a~~l~~~~s~ 178 (221)
..|...|+|++++++.....+.
T Consensus 126 yaH~tIN~g~~~L~~~~~~~~~ 147 (182)
T PF06560_consen 126 YAHRTINTGDEPLVFAAWVPRD 147 (182)
T ss_dssp -EEEEEE-SSS-EEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEEEEecC
Confidence 9999999999999998887643
No 28
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.61 E-value=5e-07 Score=76.89 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=54.4
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
.|+...+.++. ...+ ||.+..|+.||++|++++.++++ ++.+++||+++||+|..|.+...+ .++++.+.
T Consensus 156 ~m~aGf~~~~~-~sf~--wtl~~dEi~YVLEGe~~l~IdG~-----t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV~ 225 (233)
T PRK15457 156 SMAAGFMQWEN-AFFP--WTLNYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYVA 225 (233)
T ss_pred ceeeEEEEEec-Cccc--eeccceEEEEEEEeEEEEEECCE-----EEEeCCCcEEEECCCCeEEecCCC--CeeEEEEE
Confidence 35555556654 3333 55556999999999999999887 999999999999999996665543 66776655
Q ss_pred cC
Q 027585 176 NS 177 (221)
Q Consensus 176 ~s 177 (221)
..
T Consensus 226 ~P 227 (233)
T PRK15457 226 WP 227 (233)
T ss_pred ec
Confidence 43
No 29
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.59 E-value=3.7e-07 Score=66.63 Aligned_cols=73 Identities=33% Similarity=0.471 Sum_probs=56.7
Q ss_pred ceEEEEEEEcCCCcCCC-CCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585 96 GISMNRVDFAPGGLNPP-HSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 174 (221)
.++...++|+||+.-++ +.+.. .-++||++|.+++.+.+. ++.+.+|+++++|+|-...+.|.++++++++.+
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~-~~vF~V~~G~v~Vti~~~-----~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDN-TMVFYVIKGKVEVTIHET-----SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SE-EEEEEEEESEEEEEETTE-----EEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred CceeEEEEeCCCCccCCcccCCc-EEEEEEEeCEEEEEEcCc-----EEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 36788999999997544 55654 899999999999999988 999999999999999999999999999998754
No 30
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.55 E-value=2.6e-07 Score=78.46 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=64.0
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585 97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN 176 (221)
Q Consensus 97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 176 (221)
..+..+.++||+..+.|.|.+ .|+.+|++|+.. ++ ...+.+||.+..|.|..|...+.++++++++++.+
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~G-~E~tlVLeG~f~----de-----~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~d 196 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHKG-FELTLVLHGAFS----DE-----TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLD 196 (215)
T ss_pred cEEEEEEECCCCccCCCcCCC-cEEEEEEEEEEE----cC-----CCccCCCeEEECCCCCCcCcccCCCCCeEEEEEec
Confidence 456788999999999999977 999999999953 55 45789999999999999999999999999999987
Q ss_pred CCC
Q 027585 177 SHL 179 (221)
Q Consensus 177 s~~ 179 (221)
.+-
T Consensus 197 apl 199 (215)
T TIGR02451 197 APL 199 (215)
T ss_pred CCc
Confidence 553
No 31
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.53 E-value=3.9e-07 Score=80.76 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=52.4
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585 101 RVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE 166 (221)
Q Consensus 101 ~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 166 (221)
...-.|..+.++|||.. -|+.|+++|++.+.++++ .+.+++||.+++++|.+|.....++
T Consensus 30 ~~~~~~~~m~~~HwH~e-~Ei~yv~~G~~~~~i~g~-----~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 30 IEFRPPHIMPTSHWHGQ-VEVNVPFDGDVEYLINNE-----KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEeeCCCCCCCCCcccc-EEEEEecCCcEEEEECCE-----EEEEcCCcEEEEecCCcccccccCC
Confidence 33456677899999998 999999999999999887 9999999999999999998766544
No 32
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.44 E-value=1.9e-06 Score=69.85 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=51.8
Q ss_pred CCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585 110 NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN 176 (221)
Q Consensus 110 ~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 176 (221)
...|.|.+ +|+-|+++|++.+.+...+++.....+++||.+++|+|+.||+.-..+...+++=.|.
T Consensus 85 ~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~ 150 (157)
T PF03079_consen 85 FEEHTHED-EEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK 150 (157)
T ss_dssp CS-EEESS--EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred heeEecCh-heEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence 47899998 9999999999999999887777778999999999999999999876666677766665
No 33
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.43 E-value=3.8e-07 Score=66.90 Aligned_cols=66 Identities=26% Similarity=0.461 Sum_probs=52.3
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT 173 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 173 (221)
|..+..++++||+..|.|.|+. .|.+|||+|++.. . ...+.+||.++.|+|..|.... ++.+.++.
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~g-~ee~~VLeG~~~d----~-----~~~~~~G~~~~~p~g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHPG-GEEILVLEGELSD----G-----DGRYGAGDWLRLPPGSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEEE----T-----TCEEETTEEEEE-TTEEEEEEE--SSCEEEEE
T ss_pred cCEEEEEEECCCCCcCccCCCC-cEEEEEEEEEEEE----C-----CccCCCCeEEEeCCCCccccCc--CCCEEEEE
Confidence 4578889999999999999998 8888999999884 2 2356999999999999999984 55666654
No 34
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.29 E-value=6.9e-06 Score=66.74 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=62.3
Q ss_pred CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeec
Q 027585 111 PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIV 185 (221)
Q Consensus 111 ~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~ 185 (221)
.-|.|.+ .|+-|++.|.+.+.+...+|+.+...+.+||.+.+|+|+-||+.-..+...+++=.|+ ..+|++-.
T Consensus 89 ~EH~H~d-~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWVa~ 161 (181)
T COG1791 89 QEHLHTD-DEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWVAI 161 (181)
T ss_pred HHhccCC-ceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCceee
Confidence 5699987 9999999999999999999999999999999999999999999876666666666665 55666544
No 35
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.27 E-value=1.2e-05 Score=62.25 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=73.6
Q ss_pred cccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585 93 NTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF 172 (221)
Q Consensus 93 ~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 172 (221)
.+.|+|+..-.+.+|.....|+-.. -|-+|+++|++++...+ +|+ .+.++||.++...+...|..+... +++++
T Consensus 31 DgmGFS~h~T~i~aGtet~~~YknH-lEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~~--dm~~v 104 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYKNH-LEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAKT--DMRLV 104 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEecCc-eEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEecC--CEEEE
Confidence 4678999999999999999998665 99999999999998764 355 899999999999999999999754 99999
Q ss_pred EEEcCCCCee
Q 027585 173 TAFNSHLPGA 182 (221)
Q Consensus 173 ~~~~s~~pg~ 182 (221)
|+|+.+--|.
T Consensus 105 CVFnPpltG~ 114 (126)
T PF06339_consen 105 CVFNPPLTGR 114 (126)
T ss_pred EEcCCCCcCc
Confidence 9999876554
No 36
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.27 E-value=6.8e-06 Score=71.33 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=46.2
Q ss_pred CCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEec
Q 027585 107 GGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNV 164 (221)
Q Consensus 107 gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~ 164 (221)
+...++|||.. .|++||++|++++.+++. .+.+.+||.+++|+|..|.....
T Consensus 33 ~~~~~~H~H~~-~ei~~v~~G~~~~~i~~~-----~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHDY-YEFTLVLTGRYYQEINGK-----RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCccccc-EEEEEEEeceEEEEECCE-----EEEECCCcEEEeCCCCccceeee
Confidence 34568999986 999999999999999887 89999999999999999976543
No 37
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.25 E-value=3.7e-06 Score=73.56 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=49.1
Q ss_pred cCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585 105 APGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE 166 (221)
Q Consensus 105 ~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 166 (221)
.+....++|||+. .|++||++|++++.+++. .+.+++||++++|+|.+|.+...++
T Consensus 26 ~~~~~~~~H~H~~-~ei~~i~~G~~~~~i~~~-----~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 26 YPQETFVEHTHQF-CEIVIVWRGNGLHVLNDH-----PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CCCCCCccccccc-eeEEEEecCceEEEECCe-----eeeecCCeEEEEcCCCcccccccCC
Confidence 4445577999986 999999999999999887 9999999999999999999876543
No 38
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.17 E-value=8.5e-06 Score=72.39 Aligned_cols=56 Identities=23% Similarity=0.255 Sum_probs=49.3
Q ss_pred cCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585 105 APGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE 166 (221)
Q Consensus 105 ~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 166 (221)
-|....++|||+. .|++||++|++.+.+++. .+.+++||++++|++..|.+....+
T Consensus 56 ~~~~~~~~H~H~~-~el~~v~~G~g~~~v~~~-----~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 56 YPQDVFAEHTHDF-CELVIVWRGNGLHVLNDR-----PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCCccccce-EEEEEEEcCeEEEEECCE-----EEeecCCeEEEECCCCeecccccCC
Confidence 3444578999986 999999999999999988 9999999999999999999876544
No 39
>PRK13503 transcriptional activator RhaS; Provisional
Probab=98.17 E-value=5.1e-06 Score=71.79 Aligned_cols=55 Identities=24% Similarity=0.236 Sum_probs=48.8
Q ss_pred cCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecC
Q 027585 105 APGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVG 165 (221)
Q Consensus 105 ~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g 165 (221)
.+....++|||+. .|++||++|++++.+++. .+.+++||++++|++..|.+.+..
T Consensus 23 ~~~~~~~~H~H~~-~ei~~v~~G~~~~~i~~~-----~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 23 LPQAAFPEHHHDF-HEIVIVEHGTGIHVFNGQ-----PYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred CccccccccccCc-eeEEEEecCceeeEecCC-----cccccCCcEEEECCCccchhhhcc
Confidence 3445678999987 999999999999999988 999999999999999999887653
No 40
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.15 E-value=1.8e-05 Score=66.78 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=66.6
Q ss_pred eEEEEEEEcCCC-cCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 97 ISMNRVDFAPGG-LNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 97 is~~~v~l~Pgg-~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
++-..+++.|+| .-.+-.-++++-++||++|++++.+.++ ++.|++|+..++|+|..|.++|...+++++.++-
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~-----th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK-----THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe-----EEEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence 345678898876 6677778888999999999999999988 9999999999999999999999999999998875
Q ss_pred c
Q 027585 176 N 176 (221)
Q Consensus 176 ~ 176 (221)
.
T Consensus 136 k 136 (264)
T COG3257 136 K 136 (264)
T ss_pred e
Confidence 4
No 41
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.14 E-value=7.2e-06 Score=71.25 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=50.7
Q ss_pred CCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585 107 GGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF 172 (221)
Q Consensus 107 gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 172 (221)
+...++|||.+.-|++|+++|++++.+++. .+.+++||++++|+|..|.+...++....++
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~~~-----~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i 93 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLDEH-----EYSEYAPCFFLTPPSVPHGFVTDLDADGHVL 93 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEECCE-----EEEecCCeEEEeCCCCccccccCCCcceEEE
Confidence 456799999744899999999999999877 8999999999999999999876554443333
No 42
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=98.13 E-value=1.1e-05 Score=63.33 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=52.4
Q ss_pred CeeEEEeecc-ccCCCcccceEEEEE-EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCc-EEEEC
Q 027585 78 GSAVTPANVL-AFPGVNTLGISMNRV-DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGE-MFVIP 154 (221)
Q Consensus 78 g~~v~~~~~~-~fP~l~~~gis~~~v-~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GD-v~~~P 154 (221)
.|.++.+... ..|.--. .+..+ ..++|....+|.|....|+++|++|++++.+.+..++ .++.|...+ .+.+|
T Consensus 15 RG~L~~~e~~~~ipf~i~---rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ip 90 (131)
T PF05523_consen 15 RGSLSVIERFDDIPFEIK---RVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIP 90 (131)
T ss_dssp TEEEEEEETTTSSSS------EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-
T ss_pred CCcEEEEeccCCCCCCcc---EEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEEC
Confidence 4555555543 2443111 23333 3445555899999999999999999999998875443 577777765 99999
Q ss_pred CCCeEEEEecCCccEEEEEEE
Q 027585 155 RGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 155 ~g~~H~~~N~g~~~a~~l~~~ 175 (221)
+|..|.+.|.+++ +++++..
T Consensus 91 pg~w~~~~~~s~~-svlLv~a 110 (131)
T PF05523_consen 91 PGVWHGIKNFSED-SVLLVLA 110 (131)
T ss_dssp TT-EEEEE---TT--EEEEEE
T ss_pred CchhhHhhccCCC-cEEEEEc
Confidence 9999999999877 6666543
No 43
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.10 E-value=7.9e-06 Score=73.63 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=63.6
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEE-EEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLL-VGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~-v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 174 (221)
.+....-.+.||...++|.|.. .-+.+|++|++. ..++++ +..+++||+++.|++..|...|.|++++..+.+
T Consensus 80 tl~a~~q~l~pGe~~~~HRht~-sAl~~vveG~G~~t~V~g~-----~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~ 153 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHTQ-SALRFIVEGKGAFTAVDGE-----RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDG 153 (335)
T ss_pred hHHhhhEEeCCCCCCCcccccc-ceEEEEEEcCceEEEECCE-----EEeeeCCCEEEeCCCeeEecccCCCCcEEEEec
Confidence 3455667789999999999986 899999999996 445555 899999999999999999999999999777666
Q ss_pred Ec
Q 027585 175 FN 176 (221)
Q Consensus 175 ~~ 176 (221)
.+
T Consensus 154 lD 155 (335)
T TIGR02272 154 LD 155 (335)
T ss_pred CC
Confidence 54
No 44
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.09 E-value=6.8e-06 Score=64.62 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=54.1
Q ss_pred CCcC-CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 107 GGLN-PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 107 gg~~-~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
|++. --|+|.++.|++.|++|+..+.+++.+|. +..+.+||++++|+|+-|.- +....+..++..|
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaY 118 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAY 118 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCccccc-ccCCCCeEEEccc
Confidence 4443 34799999999999999999999998887 78999999999999999975 3345566666655
No 45
>PRK13502 transcriptional activator RhaR; Provisional
Probab=98.06 E-value=1.9e-05 Score=68.64 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=49.4
Q ss_pred EcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585 104 FAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE 166 (221)
Q Consensus 104 l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 166 (221)
..|+...++|||+. -|++||.+|++++.+++. .+.+++||++++|++.+|.+...++
T Consensus 25 ~~~~~~~~~H~h~~-~~l~~v~~G~~~~~i~~~-----~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 25 RYPQDVFAEHTHEF-CELVMVWRGNGLHVLNER-----PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCCccccce-EEEEEEecCcEEEEECCE-----EEeecCCcEEEECCCCcccccccCC
Confidence 34555578999985 999999999999999887 9999999999999999999875443
No 46
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.87 E-value=3.2e-05 Score=68.20 Aligned_cols=115 Identities=18% Similarity=0.256 Sum_probs=85.6
Q ss_pred cccCCeEEecc----cCCCCcccCCeeEEEeeccccCCCcccc-----eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCE
Q 027585 58 VTSGDFFFDGL----SKEGNTTIFGSAVTPANVLAFPGVNTLG-----ISMNRVDFAPGGLNPPHSHPRASESGIVIKGK 128 (221)
Q Consensus 58 ~~~~df~~~~l----~~~~~~~~~g~~v~~~~~~~fP~l~~~g-----is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~ 128 (221)
..+.-+.|.-+ ...|...+....++.+-.-+-|+++++. +....--+.||...|.|.|.. .-+-||++|+
T Consensus 44 ~vp~lW~~~~ir~ll~~sgeli~~~~a~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsq-sAlRFvveG~ 122 (351)
T COG3435 44 CVPALWKYEEIRPLLLRSGELISAREAVRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQ-SALRFVVEGK 122 (351)
T ss_pred cccccccHHHHHHHHHHhhhccCcccceeEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccccc-cceEEEEecc
Confidence 33444555543 2334442233445666666778888764 223444678999999999987 8999999999
Q ss_pred EEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcC
Q 027585 129 LLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNS 177 (221)
Q Consensus 129 ~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s 177 (221)
+-+++++. ....+++||.++-|++..|..-|.|++|+.++-.++.
T Consensus 123 Ga~T~VdG----er~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDi 167 (351)
T COG3435 123 GAYTVVDG----ERTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDI 167 (351)
T ss_pred ceeEeecC----ceeeccCCCEEEccCceeccCCCCCCCceEEEcccch
Confidence 98877754 2789999999999999999999999999999887653
No 47
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.86 E-value=3.3e-05 Score=54.68 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=43.8
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585 97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN 163 (221)
Q Consensus 97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 163 (221)
++....+-.||.. ++++. ..|++||++|++++... +|. ++++++||.+++|+|..-.+.-
T Consensus 7 ~~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~~--~G~--~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 7 FSAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITDE--DGE--TVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp EEEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEET--TTE--EEEEETTEEEEE-TTEEEEEEE
T ss_pred EEEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEEC--CCC--EEEEcCCcEEEECCCCEEEEEE
Confidence 4556666777652 33333 39999999999999874 333 7999999999999998766643
No 48
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.81 E-value=4.9e-05 Score=61.46 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=52.2
Q ss_pred CCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCcc
Q 027585 110 NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGK 168 (221)
Q Consensus 110 ~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~ 168 (221)
...|.|+. +|+-||++|++.+-+.+.+++....-+++||.+++|+|+-|++.-+.+.-
T Consensus 86 fEEhlh~d-eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~ 143 (179)
T KOG2107|consen 86 FEEHLHED-EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNY 143 (179)
T ss_pred HHHhcCch-hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHH
Confidence 47899998 99999999999999999988888899999999999999999997654443
No 49
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.79 E-value=0.00026 Score=56.58 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=51.4
Q ss_pred EEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCC
Q 027585 99 MNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSH 178 (221)
Q Consensus 99 ~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~ 178 (221)
+..+.-.|+...-.|.-+. +|++|-++|...+.+.+ +|+.....+++||++..|++++|.-.-.. ..+-+++-...
T Consensus 35 ~VmvVGGPN~R~DyHine~-eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr~R 110 (151)
T PF06052_consen 35 IVMVVGGPNQRTDYHINET-EEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIERKR 110 (151)
T ss_dssp EEEEEESSB--SSEEE-SS--EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE--
T ss_pred EEEEEcCCCCCCccccCCc-ceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEecc
Confidence 3445667888888898886 99999999999999988 47778999999999999999999987754 33444444333
Q ss_pred CCe
Q 027585 179 LPG 181 (221)
Q Consensus 179 ~pg 181 (221)
.++
T Consensus 111 ~~~ 113 (151)
T PF06052_consen 111 PEG 113 (151)
T ss_dssp -TT
T ss_pred CCC
Confidence 333
No 50
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.76 E-value=8.7e-05 Score=59.74 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=48.5
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585 97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN 176 (221)
Q Consensus 97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 176 (221)
++...++++.. +.-|.-..+|+.||++|++++..+++ ++..++||+++||+|.--.+... ..++++.+..
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~G~-----~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv~y 146 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISIDGQ-----TVTAKPGDVIFIPKGSTITFSTP--DYARFFYVTY 146 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEETTE-----EEEEETT-EEEE-TT-EEEEEEE--EEEEEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEECCE-----EEEEcCCcEEEECCCCEEEEecC--CCEEEEEEEC
Confidence 44555555553 34566667999999999999997665 99999999999999998777543 3456555543
No 51
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.71 E-value=5.6e-05 Score=65.57 Aligned_cols=72 Identities=35% Similarity=0.448 Sum_probs=46.3
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF 172 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 172 (221)
|.+..++.+++|-..|||+|.. ++-+||++|++... +. +....-|.+|..++.|+|..|.....+++.+.++
T Consensus 35 g~~~~~vkf~~g~~~pph~H~~-~~~~~Vi~G~~~~~--~~--~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 35 GPSGMRVKFPAGFSSPPHIHNA-DYRGTVISGELHNG--DP--KAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp S-EEEEEEE-TT-EE--BEESS--EEEEEEESEEEET--TE--E-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred CcceEEEEcCCCccCCCcceee-eEEEEEEEeEEEcC--CC--cccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 6788999999999999999986 99999999986653 32 3445679999999999999998876666555444
No 52
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00041 Score=55.55 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=54.1
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
.+++..+++++ ...+|- -.-+|+-||+||++.+...++ +..-++||++++|+|.--.+.-+|. ++++.+.
T Consensus 99 ~l~aG~m~~~~-~tf~wt--l~yDe~d~VlEGrL~V~~~g~-----tv~a~aGDvifiPKgssIefst~ge--a~flyvt 168 (176)
T COG4766 99 RLGAGLMEMKN-TTFPWT--LNYDEIDYVLEGRLHVRIDGR-----TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLYVT 168 (176)
T ss_pred ccccceeeecc-ccCcce--ecccceeEEEeeeEEEEEcCC-----eEecCCCcEEEecCCCeEEEeccce--EEEEEEE
Confidence 35566666666 445544 345899999999999999888 8999999999999999887766554 6666554
No 53
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.64 E-value=0.00025 Score=63.98 Aligned_cols=87 Identities=16% Similarity=0.052 Sum_probs=64.1
Q ss_pred CeeEEEeeccccCC-CcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCC
Q 027585 78 GSAVTPANVLAFPG-VNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRG 156 (221)
Q Consensus 78 g~~v~~~~~~~fP~-l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g 156 (221)
|..+.-.+..+-+. ..+++.. ...+.+|....+|.|.. ..+++|++|+++..++++ ++..++||+|++|..
T Consensus 232 g~~l~y~NP~TG~~~~pti~~~--~q~L~~G~~t~~~r~T~-s~Vf~VieG~G~s~ig~~-----~~~W~~gD~f~vPsW 303 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPTIGAF--IQLLPKGFRTATYRSTD-ATVFCVVEGRGQVRIGDA-----VFRFSPKDVFVVPSW 303 (335)
T ss_pred eEEEEEeCCCCCCCcchhHHHH--HhccCCCCCCCCccccc-cEEEEEEeCeEEEEECCE-----EEEecCCCEEEECCC
Confidence 44455555444332 2333333 35678888999999976 999999999999999887 899999999999999
Q ss_pred CeEEEEecCCccEEEEEE
Q 027585 157 LIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 157 ~~H~~~N~g~~~a~~l~~ 174 (221)
..|...|. +++.++.+
T Consensus 304 ~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 304 HPVRFEAS--DDAVLFSF 319 (335)
T ss_pred CcEecccC--CCeEEEEe
Confidence 88887774 34554443
No 54
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.23 E-value=0.0093 Score=48.99 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=59.9
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe--------EEEEEecCCcEEEECCCCeEEEEecC-C
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV--------FYSKVLSAGEMFVIPRGLIHFQQNVG-E 166 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~--------~~~~~L~~GDv~~~P~g~~H~~~N~g-~ 166 (221)
.+++..+.-.||...+.|=|.++.=++.|++|+++-..-...+. .....+..|...+++.+.+|...|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 36788889999999999999987788999999988775543211 12345788888899999999999986 8
Q ss_pred ccEEEEEEEcCCCCe
Q 027585 167 GKALAFTAFNSHLPG 181 (221)
Q Consensus 167 ~~a~~l~~~~s~~pg 181 (221)
++++-+=+|+.+-..
T Consensus 154 ~~avSLHvYspPl~~ 168 (175)
T PF05995_consen 154 EPAVSLHVYSPPLEQ 168 (175)
T ss_dssp S-EEEEEEEES--SE
T ss_pred CCEEEEEEcCCChhh
Confidence 899888888866443
No 55
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.11 E-value=0.0015 Score=57.75 Aligned_cols=92 Identities=22% Similarity=0.113 Sum_probs=68.2
Q ss_pred ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEEC
Q 027585 75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIP 154 (221)
Q Consensus 75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P 154 (221)
...|..++-++..+=-... --|....-.+.||-...+|.|.+ +-+.-|.+|+++..++++ ++..++||+|++|
T Consensus 240 p~dG~~~ryvNP~TGg~~m-ptI~a~mqlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~Ig~~-----rf~~~~~D~fvVP 312 (351)
T COG3435 240 PFDGYKMRYVNPVTGGYAM-PTIGAFMQLLPPGFHGKAHRHTD-STIYHVVEGSGYTIIGGE-----RFDWSAGDIFVVP 312 (351)
T ss_pred CCCcceEEEecCCCCCCcC-chHHHHHHhcCCcccCCceeccC-CEEEEEEecceeEEECCE-----EeeccCCCEEEcc
Confidence 3456666666653321111 01222233567888889999987 889999999999999988 9999999999999
Q ss_pred CCCeEEEEecCCccEEEEEE
Q 027585 155 RGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 155 ~g~~H~~~N~g~~~a~~l~~ 174 (221)
.-..|...|. .+++.++++
T Consensus 313 sW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 313 SWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred CcceeecccC-CcceEEEec
Confidence 9999999985 777777664
No 56
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.94 E-value=0.0024 Score=49.18 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=45.7
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585 97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN 163 (221)
Q Consensus 97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 163 (221)
++....+-.||. ++++-...|+.++|+|++++.-++ |+ ...+++||+++||+|..=.++-
T Consensus 45 ~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~d~--Ge--~v~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 45 VETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTPDG--GE--PVEVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred eeEeEEEecCcc---ceEEcccceEEEEEeeEEEEECCC--Ce--EEEEcCCCEEEECCCCeEEEEE
Confidence 445555555654 456655699999999999998654 44 8899999999999998776654
No 57
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=96.80 E-value=0.0089 Score=49.20 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=59.4
Q ss_pred CCCcCCCCCCCCC-cEEEEEEeCEEEEEEEecC------CeEEEEEecCC--cEEEECCCCeEEEEecCCccEEEEEE--
Q 027585 106 PGGLNPPHSHPRA-SESGIVIKGKLLVGFFTTN------NVFYSKVLSAG--EMFVIPRGLIHFQQNVGEGKALAFTA-- 174 (221)
Q Consensus 106 Pgg~~~~H~Hp~a-~Ei~yVl~G~~~v~~~~~~------~~~~~~~L~~G--Dv~~~P~g~~H~~~N~g~~~a~~l~~-- 174 (221)
||-...+|+|..- .+++.|++|++.....+-- |+....++.+. ..+++|+|..|-+.|.+++...++.+
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~~ 133 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVTE 133 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEecc
Confidence 8888999999876 8999999999998877631 46667778766 89999999999999999887444433
Q ss_pred -EcCCCC
Q 027585 175 -FNSHLP 180 (221)
Q Consensus 175 -~~s~~p 180 (221)
++.+.|
T Consensus 134 ~Y~p~~~ 140 (173)
T COG1898 134 EYDPEHE 140 (173)
T ss_pred eeCcccc
Confidence 344445
No 58
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.44 E-value=0.018 Score=47.48 Aligned_cols=77 Identities=18% Similarity=0.149 Sum_probs=57.9
Q ss_pred cCCCcCCCCCCC--CCcEEEEEEeCEEEEEEEecC------CeEEEEEecC--CcEEEECCCCeEEEEecCCccEEEEEE
Q 027585 105 APGGLNPPHSHP--RASESGIVIKGKLLVGFFTTN------NVFYSKVLSA--GEMFVIPRGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 105 ~Pgg~~~~H~Hp--~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~L~~--GDv~~~P~g~~H~~~N~g~~~a~~l~~ 174 (221)
.+|....+|.|. .-..++.|++|++...+.|-- |+.....|.+ +..++||+|..|-+.+.+++ +.++-.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 567788999983 358999999999999888741 6777888887 55999999999999998866 444433
Q ss_pred EcC-CCCee
Q 027585 175 FNS-HLPGA 182 (221)
Q Consensus 175 ~~s-~~pg~ 182 (221)
.+. -+|+.
T Consensus 131 ~~~~y~p~~ 139 (176)
T TIGR01221 131 CTDYYAPEY 139 (176)
T ss_pred CCCCcCccc
Confidence 332 24543
No 59
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.42 E-value=0.035 Score=45.78 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=55.2
Q ss_pred cCCCcCCCCCCCCC---cEEEEEEeCEEEEEEEec--C----CeEEEEEecCCc--EEEECCCCeEEEEecCCccEEEEE
Q 027585 105 APGGLNPPHSHPRA---SESGIVIKGKLLVGFFTT--N----NVFYSKVLSAGE--MFVIPRGLIHFQQNVGEGKALAFT 173 (221)
Q Consensus 105 ~Pgg~~~~H~Hp~a---~Ei~yVl~G~~~v~~~~~--~----~~~~~~~L~~GD--v~~~P~g~~H~~~N~g~~~a~~l~ 173 (221)
.+|....+|+|... ..++.|++|++...+.|- + |+.....|.+++ .++||+|..|-+.+.+++...++-
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 45778899998663 689999999999888863 2 688889998886 799999999999999777444443
Q ss_pred EEcCCCCe
Q 027585 174 AFNSHLPG 181 (221)
Q Consensus 174 ~~~s~~pg 181 (221)
+-..-+|+
T Consensus 131 ~t~~y~p~ 138 (176)
T PF00908_consen 131 VTNYYDPE 138 (176)
T ss_dssp ESS---GG
T ss_pred cCCccCcc
Confidence 32233344
No 60
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.27 E-value=0.046 Score=50.89 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=38.7
Q ss_pred CCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585 114 SHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 114 ~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 174 (221)
.+.+++|++++-+|++++...-. ...+++||.++||+|+.+++.-. ++++.+.+
T Consensus 142 ~NaDGD~Li~~q~G~l~l~Te~G-----~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~ 195 (424)
T PF04209_consen 142 RNADGDELIFPQQGSLRLETEFG-----RLDVRPGDYVVIPRGTRFRVELP--GPARGYII 195 (424)
T ss_dssp EESSEEEEEEEEES-EEEEETTE-----EEEE-TTEEEEE-TT--EEEE-S--SSEEEEEE
T ss_pred EcCCCCEEEEEEECCEEEEecCe-----eEEEcCCeEEEECCeeEEEEEeC--CCceEEEE
Confidence 45667999999999999986654 68899999999999999998776 55555544
No 61
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=96.18 E-value=0.02 Score=49.88 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=40.7
Q ss_pred CCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585 112 PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE 166 (221)
Q Consensus 112 ~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 166 (221)
+|-+.+ -++.++++|++.+..++. .+.+++||.+++|+|.+|.+....+
T Consensus 44 ~~~~~~-~~i~~~~~G~~~~~~~~~-----~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 44 PLGMKG-YILNLTIRGQGVIFNGGR-----AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCCccc-eEEEEEEeccEEEecCCe-----eEecCCCCEEEECCCCceeeccCCC
Confidence 344443 789999999999988777 8999999999999999998766443
No 62
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.07 E-value=0.035 Score=46.69 Aligned_cols=69 Identities=25% Similarity=0.429 Sum_probs=48.3
Q ss_pred EEEEEEcC-CCcCCCCCCCCCcEEEEEEeCEEEEEEEecC--------C---------------------------eEEE
Q 027585 99 MNRVDFAP-GGLNPPHSHPRASESGIVIKGKLLVGFFTTN--------N---------------------------VFYS 142 (221)
Q Consensus 99 ~~~v~l~P-gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~--------~---------------------------~~~~ 142 (221)
...+.+.+ |...++|+.+. .-++.+++|+=++.+..+. . +..+
T Consensus 132 ~~~l~ig~~gs~t~lH~D~~-~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDPS-HNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-SS-EEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECch-hhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 44566666 55689999874 8899999999888776542 1 2457
Q ss_pred EEecCCcEEEECCCCeEEEEecCCcc
Q 027585 143 KVLSAGEMFVIPRGLIHFQQNVGEGK 168 (221)
Q Consensus 143 ~~L~~GDv~~~P~g~~H~~~N~g~~~ 168 (221)
.+|++||+++||+|..|+++|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999984333
No 63
>PF12852 Cupin_6: Cupin
Probab=95.98 E-value=0.041 Score=44.95 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=37.0
Q ss_pred cEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecC
Q 027585 119 SESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVG 165 (221)
Q Consensus 119 ~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g 165 (221)
.-+.+|++|+.++.+.+. + ....|++||++++|+|..|.+....
T Consensus 36 ~~fh~V~~G~~~l~~~~~-~--~~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGG-G--EPIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred eEEEEEECCeEEEEEcCC-C--CeEEecCCCEEEEcCCCCeEeCCCC
Confidence 678899999999998761 1 2799999999999999999995543
No 64
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=95.89 E-value=0.036 Score=47.20 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=60.6
Q ss_pred ccceEEEEEEEcCCCcCCC-CCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585 94 TLGISMNRVDFAPGGLNPP-HSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF 172 (221)
Q Consensus 94 ~~gis~~~v~l~Pgg~~~~-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 172 (221)
.-++-+..+.++||+..|. -+|-- +-=+||+||+....++.. ...+++||.+..-+-.+.+....|....+.+
T Consensus 179 r~Dmhv~ivsFePGa~ip~aEtHvm-EHGlyvLeGk~vYrLn~d-----wv~V~aGD~mwm~A~cpQacyagG~g~frYL 252 (264)
T COG3257 179 RFDMHVHIVSFEPGASIPYAETHVM-EHGLYVLEGKGVYRLNNN-----WVPVEAGDYIWMGAYCPQACYAGGRGAFRYL 252 (264)
T ss_pred CcceEEEEEEecCCcccchhhhhhh-hcceEEEecceEEeecCc-----eEEeecccEEEeeccChhhhccCCCCceEEE
Confidence 4467889999999998754 34432 345999999999999877 8999999999999999999888888776665
Q ss_pred EE
Q 027585 173 TA 174 (221)
Q Consensus 173 ~~ 174 (221)
..
T Consensus 253 ly 254 (264)
T COG3257 253 LY 254 (264)
T ss_pred EE
Confidence 43
No 65
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.75 E-value=0.05 Score=46.36 Aligned_cols=74 Identities=20% Similarity=0.340 Sum_probs=45.6
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEe-CEEEEEEEecC----------------CeEE------EEEecCCcEEEECCC
Q 027585 100 NRVDFAPGGLNPPHSHPRASESGIVIK-GKLLVGFFTTN----------------NVFY------SKVLSAGEMFVIPRG 156 (221)
Q Consensus 100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~-G~~~v~~~~~~----------------~~~~------~~~L~~GDv~~~P~g 156 (221)
-.+.+.+|+..|+|.|..-.|=++.-- |.+.+++-..+ |+.. ...|+||+++-+++|
T Consensus 90 Kim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg 169 (225)
T PF07385_consen 90 KIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPG 169 (225)
T ss_dssp EEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TT
T ss_pred hheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCC
Confidence 345678999999999988788777765 67766665431 2211 468999999999999
Q ss_pred CeEEEEecCCccEEEEEEE
Q 027585 157 LIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 157 ~~H~~~N~g~~~a~~l~~~ 175 (221)
..|+++..+.. +++.=+
T Consensus 170 ~yH~Fw~e~g~--vLigEV 186 (225)
T PF07385_consen 170 IYHWFWGEGGD--VLIGEV 186 (225)
T ss_dssp EEEEEEE-TTS--EEEEEE
T ss_pred CeeeEEecCCC--EEEEee
Confidence 99999986544 444433
No 66
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.69 E-value=0.099 Score=48.75 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=44.9
Q ss_pred CCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585 112 PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 112 ~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 174 (221)
.-.+.+++|++++-+|++++...-. ...+++||.++||+|+.+++.- .+++++.+.+
T Consensus 148 ~f~NaDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l-~~gp~rgyi~ 204 (438)
T PRK05341 148 YFYNADGELLIVPQQGRLRLATELG-----VLDVEPGEIAVIPRGVKFRVEL-PDGPARGYVC 204 (438)
T ss_pred eeecCCCCEEEEEEeCCEEEEEecc-----ceEecCCCEEEEcCccEEEEec-CCCCeeEEEE
Confidence 3345567999999999999987655 7899999999999999999874 3455555443
No 67
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.66 E-value=0.092 Score=47.04 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=45.4
Q ss_pred EEEEEEcCCC--cCCCCCCCCCcEEEEEEeCEEEEEEEecC------------------CeEEEEEecCCcEEEECCCCe
Q 027585 99 MNRVDFAPGG--LNPPHSHPRASESGIVIKGKLLVGFFTTN------------------NVFYSKVLSAGEMFVIPRGLI 158 (221)
Q Consensus 99 ~~~v~l~Pgg--~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~------------------~~~~~~~L~~GDv~~~P~g~~ 158 (221)
.+.+-+.|++ ...+|+=.. +-+++=++|+=++.+.... ......+|+|||++|+|+|.+
T Consensus 115 ~~n~Y~tp~g~~g~~~H~D~~-dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~ 193 (319)
T PF08007_consen 115 GANAYLTPPGSQGFGPHYDDH-DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWW 193 (319)
T ss_dssp EEEEEEETSSBEESECEE-SS-EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-E
T ss_pred ceEEEecCCCCCCccCEECCc-ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCcc
Confidence 3455677777 689998664 7778888998888877621 113479999999999999999
Q ss_pred EEEEecC
Q 027585 159 HFQQNVG 165 (221)
Q Consensus 159 H~~~N~g 165 (221)
|.....+
T Consensus 194 H~~~~~~ 200 (319)
T PF08007_consen 194 HQAVTTD 200 (319)
T ss_dssp EEEEESS
T ss_pred CCCCCCC
Confidence 9999988
No 68
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=95.45 E-value=0.14 Score=47.68 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=44.2
Q ss_pred CCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585 112 PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT 173 (221)
Q Consensus 112 ~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 173 (221)
.-...+++|++++-+|++.+...-. ...+++||.++||+|+.+++.-.+ +++.+.
T Consensus 142 ~f~NaDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~g--p~rgyi 196 (429)
T TIGR01015 142 AFYNADGDFLIVPQQGALLITTEFG-----RLLVEPNEICVIPRGVRFRVTVLE--PARGYI 196 (429)
T ss_pred eeeccCCCEEEEEEeCcEEEEEecc-----ceEecCCCEEEecCccEEEEeeCC--CceEEE
Confidence 3345566999999999999987655 789999999999999999997654 544443
No 69
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=95.31 E-value=0.12 Score=45.05 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=47.8
Q ss_pred eEEEEEEEcCCCcC-----CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585 97 ISMNRVDFAPGGLN-----PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE 166 (221)
Q Consensus 97 is~~~v~l~Pgg~~-----~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 166 (221)
+.+.++...+.... ..|.+.+.-.++++++|++.+..++. ...+++||+++++++.+|.+.-.++
T Consensus 45 ~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~g~-----~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 45 LKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQDDR-----QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred EEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEECCe-----EEEEcCCCEEEEECCCCcEeecCCC
Confidence 45666665554321 23444454667888999999998777 8999999999999999998865444
No 70
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.30 E-value=0.051 Score=40.23 Aligned_cols=74 Identities=20% Similarity=0.331 Sum_probs=33.6
Q ss_pred EEEcCCCcCCCCCCCCCc-EEEEEE---eCEEEEEEEecC------------------CeEEEEEecCCcEEEECCCCeE
Q 027585 102 VDFAPGGLNPPHSHPRAS-ESGIVI---KGKLLVGFFTTN------------------NVFYSKVLSAGEMFVIPRGLIH 159 (221)
Q Consensus 102 v~l~Pgg~~~~H~Hp~a~-Ei~yVl---~G~~~v~~~~~~------------------~~~~~~~L~~GDv~~~P~g~~H 159 (221)
....+|+..++|.|+++. --+|-+ ++...+.+.++. ........++||+++||+-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 456788889999998732 112222 122223333221 1244678899999999999999
Q ss_pred EEEecCCccEEEEEEE
Q 027585 160 FQQNVGEGKALAFTAF 175 (221)
Q Consensus 160 ~~~N~g~~~a~~l~~~ 175 (221)
.......+.-|+-..|
T Consensus 85 ~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 85 GVPPNNSDEERISISF 100 (101)
T ss_dssp EE----SSS-EEEEEE
T ss_pred eccCcCCCCCEEEEEc
Confidence 9865433333444333
No 71
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.29 E-value=0.083 Score=40.10 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=46.9
Q ss_pred CCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECC--CCeEEEEecCC-ccEEEEEE
Q 027585 107 GGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR--GLIHFQQNVGE-GKALAFTA 174 (221)
Q Consensus 107 gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~--g~~H~~~N~g~-~~a~~l~~ 174 (221)
+...++|-|.+-+-+-||++|+++-. |+.|. ..+|++||+-++-+ |+.|.-.|.++ ++++.+-+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl 105 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL 105 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence 45568899999777789999998654 44454 57899999877765 57999999887 77777643
No 72
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=95.20 E-value=0.048 Score=44.18 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=46.5
Q ss_pred EEEEEEEcCCCcCCCCCCCCC----cEEEEEE-eCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585 98 SMNRVDFAPGGLNPPHSHPRA----SESGIVI-KGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF 172 (221)
Q Consensus 98 s~~~v~l~Pgg~~~~H~Hp~a----~Ei~yVl-~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l 172 (221)
.+....+.||+.+.||.-+.. ..+-+++ .+...+.++++ ++..++|++++|.-...|...|.|+++-+.+
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~~~-----~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L 155 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVGGE-----TRHWREGECWVFDDSFEHEVWNNGDEDRVVL 155 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEETTE-----EEB--CTEEEEE-TTS-EEEEESSSS-EEEE
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEECCe-----EEEeccCcEEEEeCCEEEEEEeCCCCCEEEE
Confidence 345557899999999986532 2233444 35577777666 8899999999999999999999988764444
Q ss_pred E
Q 027585 173 T 173 (221)
Q Consensus 173 ~ 173 (221)
.
T Consensus 156 ~ 156 (163)
T PF05118_consen 156 I 156 (163)
T ss_dssp E
T ss_pred E
Confidence 3
No 73
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.07 E-value=0.014 Score=50.76 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=44.8
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585 97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN 176 (221)
Q Consensus 97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 176 (221)
+.-..+.++.|.....|+|.. .|-.|||+|++.++..+..+ ...|.+|-.+.-|.+..|... .+++++.++.-.+
T Consensus 171 ~~gll~kLPagf~g~i~~h~~-~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRtd 245 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHAS-NERAVVISGELDYQSYGASN---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRTD 245 (251)
T ss_dssp E-EEEEE-SSEE--SEEE--S--EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--E-------EESS-EEEEEEES
T ss_pred eeeEEEEcCCCCcCceeccCC-ceEEEEEEeEEEEeecccCC---CccccCCcccccCCccccccc-ccCCCEEEEEEEC
Confidence 334556666677789999987 99999999999996543211 689999999999999999998 6788888887655
Q ss_pred C
Q 027585 177 S 177 (221)
Q Consensus 177 s 177 (221)
.
T Consensus 246 G 246 (251)
T PF14499_consen 246 G 246 (251)
T ss_dssp S
T ss_pred C
Confidence 3
No 74
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.07 E-value=0.2 Score=46.71 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=43.7
Q ss_pred CCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585 113 HSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT 173 (221)
Q Consensus 113 H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 173 (221)
-.+.+++|++++-+|++.+...-. ...+++||.++||+|+.+++.-. +++++.+.
T Consensus 142 f~NaDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~-~gp~rgyv 196 (435)
T PLN02658 142 FCNADGDFLIVPQQGRLWIKTELG-----KLQVSPGEIVVIPRGFRFAVDLP-DGPSRGYV 196 (435)
T ss_pred eecCCCCEEEEEEeCCEEEEEecc-----ceEecCCCEEEecCccEEEEecC-CCCeeEEE
Confidence 445567999999999999987655 78899999999999999988643 34555544
No 75
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=95.06 E-value=0.13 Score=42.99 Aligned_cols=68 Identities=29% Similarity=0.391 Sum_probs=44.3
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEE-EeCEEEEEEEecC----------------CeEE------EEEecCCcEEEECCC
Q 027585 100 NRVDFAPGGLNPPHSHPRASESGIV-IKGKLLVGFFTTN----------------NVFY------SKVLSAGEMFVIPRG 156 (221)
Q Consensus 100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yV-l~G~~~v~~~~~~----------------~~~~------~~~L~~GDv~~~P~g 156 (221)
..+.+.+|...|+|.|.+..|=+.= =.|++.+.+.... |+.. ...|+||+.+-+|+|
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg 168 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPG 168 (225)
T ss_pred eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCC
Confidence 4566789999999999854443221 2234444333211 2111 468999999999999
Q ss_pred CeEEEEecCCc
Q 027585 157 LIHFQQNVGEG 167 (221)
Q Consensus 157 ~~H~~~N~g~~ 167 (221)
..|+++..+..
T Consensus 169 ~~HsFwae~g~ 179 (225)
T COG3822 169 LYHSFWAEEGG 179 (225)
T ss_pred ceeeeeecCCc
Confidence 99999975443
No 76
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=94.97 E-value=0.12 Score=43.46 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=45.9
Q ss_pred EEEEEEEcCCCcCCCCCCCCC--cEEEEEE--eCEEEEEEEecC-----------------C-eEEEEEecCCcEEEECC
Q 027585 98 SMNRVDFAPGGLNPPHSHPRA--SESGIVI--KGKLLVGFFTTN-----------------N-VFYSKVLSAGEMFVIPR 155 (221)
Q Consensus 98 s~~~v~l~Pgg~~~~H~Hp~a--~Ei~yVl--~G~~~v~~~~~~-----------------~-~~~~~~L~~GDv~~~P~ 155 (221)
.+....+.+|+....|.|+++ +=+.||- +|...+.+.++. . ......-++|++++||+
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS 176 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES 176 (201)
T ss_pred eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECC
Confidence 355567789999999999984 1223333 122222222210 0 01123458999999999
Q ss_pred CCeEEEEecCCccEEEEEEEc
Q 027585 156 GLIHFQQNVGEGKALAFTAFN 176 (221)
Q Consensus 156 g~~H~~~N~g~~~a~~l~~~~ 176 (221)
-+.|...-...+.-++-..|+
T Consensus 177 ~L~H~v~p~~~~~~RISiSFN 197 (201)
T TIGR02466 177 WLRHEVPPNESEEERISVSFN 197 (201)
T ss_pred CCceecCCCCCCCCEEEEEEe
Confidence 999998554334345444443
No 77
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=94.97 E-value=0.12 Score=43.42 Aligned_cols=89 Identities=20% Similarity=0.280 Sum_probs=68.0
Q ss_pred ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEEC
Q 027585 75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIP 154 (221)
Q Consensus 75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P 154 (221)
...|+.+..+.... .-...++++.+.||...|-|+|-+ -|.+.|++|. +.+++| .+.+||...-+
T Consensus 111 ~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~G-~E~t~vl~G~----~sde~G-----~y~vgD~~~~d 175 (216)
T COG3806 111 LGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHVG-IERTAVLEGA----FSDENG-----EYLVGDFTLAD 175 (216)
T ss_pred ecCCcceeecccCC-----CCCceeEEEEeccCcccccccccc-eEEEEEEeec----cccCCC-----ccccCceeecC
Confidence 34455555554333 113578999999999999999987 9999999996 445644 67899999999
Q ss_pred CCCeEEEEecCCccEEEEEEEcCC
Q 027585 155 RGLIHFQQNVGEGKALAFTAFNSH 178 (221)
Q Consensus 155 ~g~~H~~~N~g~~~a~~l~~~~s~ 178 (221)
.++-|.-.-..+.+|..+++...+
T Consensus 176 ~~v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 176 GTVQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred CccccccccCCCCCceEEEEcCCC
Confidence 999998777778888888887643
No 78
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=94.96 E-value=0.057 Score=45.74 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=49.8
Q ss_pred EcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585 104 FAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN 163 (221)
Q Consensus 104 l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 163 (221)
-.|+.....|..++ .|++|=.+|...+.+.++ |+....++++||++..|+.++|.-.-
T Consensus 40 GGPN~RkdyHieeg-eE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqR 97 (279)
T KOG3995|consen 40 GGPNTRKDYHIEEG-EEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQR 97 (279)
T ss_pred cCCCcccccccCCc-chhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhh
Confidence 35666777888887 999999999999999986 66779999999999999999997543
No 79
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=94.72 E-value=0.21 Score=44.07 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=57.4
Q ss_pred ceEEEEEEEcCCC---cCCCCCCCCCcEEEE---EEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccE
Q 027585 96 GISMNRVDFAPGG---LNPPHSHPRASESGI---VIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKA 169 (221)
Q Consensus 96 gis~~~v~l~Pgg---~~~~H~Hp~a~Ei~y---Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a 169 (221)
.+-+....+.||+ ..|||.|++..|..+ +-++.-.+++.++-.+.....++-+|+++.|+-.+|... |...-
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~--gt~~y 251 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGV--GTSNY 251 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCc--Ccccc
Confidence 4566667778998 369999997677444 223444445444333433489999999999999999864 56666
Q ss_pred EEEEEEcCCC
Q 027585 170 LAFTAFNSHL 179 (221)
Q Consensus 170 ~~l~~~~s~~ 179 (221)
.+++....+|
T Consensus 252 ~fiw~m~gen 261 (276)
T PRK00924 252 TFIWGMAGEN 261 (276)
T ss_pred EEEEEecccC
Confidence 7888776665
No 80
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=94.68 E-value=0.14 Score=43.04 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=60.8
Q ss_pred ccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC----------eEEEE-------EecCCc-EEEECC
Q 027585 94 TLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN----------VFYSK-------VLSAGE-MFVIPR 155 (221)
Q Consensus 94 ~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~----------~~~~~-------~L~~GD-v~~~P~ 155 (221)
...+++..+-++||..+|+|=||+-.=+.-|+.|++.+..-+.-. +.... .-.+++ ++..|.
T Consensus 41 ~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~ 120 (200)
T PF07847_consen 41 DEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPT 120 (200)
T ss_pred CCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccC
Confidence 335789999999999999999999666777999999997554310 11111 122223 556665
Q ss_pred C--CeEEEEecCCccEEEEEEEcCC
Q 027585 156 G--LIHFQQNVGEGKALAFTAFNSH 178 (221)
Q Consensus 156 g--~~H~~~N~g~~~a~~l~~~~s~ 178 (221)
. -+|.+.+.+ +++.++-++..+
T Consensus 121 ~ggNiH~f~a~~-~p~AflDIL~PP 144 (200)
T PF07847_consen 121 SGGNIHEFTALT-GPCAFLDILAPP 144 (200)
T ss_pred CCCeeEEEEeCC-CCeEEEEEccCC
Confidence 4 899999987 899999998765
No 81
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.58 E-value=0.18 Score=44.25 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=49.3
Q ss_pred cCCCcCCCCCC-CCCcEEEEEEeCEEEEEEEecCCe-EEEEEecCC-cEEEECCCCeEEEEecCC
Q 027585 105 APGGLNPPHSH-PRASESGIVIKGKLLVGFFTTNNV-FYSKVLSAG-EMFVIPRGLIHFQQNVGE 166 (221)
Q Consensus 105 ~Pgg~~~~H~H-p~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~L~~G-Dv~~~P~g~~H~~~N~g~ 166 (221)
-|++...+|.| ++..|.+.|++|++.+.+-+++|. .....+.+. +.-++|++..|+....++
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~ 83 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASD 83 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCC
Confidence 47778899999 788999999999999998877764 344556664 565799999999988644
No 82
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.05 E-value=0.24 Score=43.71 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=53.9
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECC--CCeEEEEec--CCccEEEEEEE
Q 027585 101 RVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR--GLIHFQQNV--GEGKALAFTAF 175 (221)
Q Consensus 101 ~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~--g~~H~~~N~--g~~~a~~l~~~ 175 (221)
..++.||.-.+||-|.+-+-+.||++|+++-. |+.|. ...+++||+-.+-+ |+.|.-.|. .++++..+-+.
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlW 122 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLW 122 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCCccCCCccceeeee
Confidence 34688999999999999677789999998765 33344 68999999887775 578988886 34466665554
No 83
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=93.68 E-value=0.41 Score=44.23 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=42.4
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEE
Q 027585 97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQ 162 (221)
Q Consensus 97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 162 (221)
+.+.++++..+.. +...+..++++|++|++++...+. +..|++|+++++|++......
T Consensus 321 F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~~~~-----~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 321 FAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWKGEQ-----QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred cEEEEEEECCceE---EecCCCcEEEEEEcceEEEEeCCe-----EEEECCCCEEEEeCCCccEEE
Confidence 5677777755421 222234799999999999875444 688999999999998776554
No 84
>PRK10579 hypothetical protein; Provisional
Probab=93.63 E-value=1.7 Score=32.29 Aligned_cols=54 Identities=24% Similarity=0.172 Sum_probs=42.5
Q ss_pred CCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585 116 PRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 116 p~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 174 (221)
..+.|+.-|++|++++.+.+++ ..+..++|+.|.+|++..-.++.. +....++.
T Consensus 39 T~~~E~MeivsG~l~V~Lpg~~---ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C~ 92 (94)
T PRK10579 39 TAEPEEMTVISGALNVLLPGAT---DWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLCR 92 (94)
T ss_pred CCCcEEEEEEeeEEEEECCCCc---ccEEeCCCCEEEECCCCeEEEEEC--cceeeEEE
Confidence 3468999999999999998752 268999999999999998777653 44455544
No 85
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.63 E-value=0.91 Score=41.41 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=45.6
Q ss_pred CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585 111 PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT 173 (221)
Q Consensus 111 ~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 173 (221)
..-...+.+|++++-+|++++..+-. ..++++||..+||+|+..+.+-.+.+ ++.+.
T Consensus 139 ~~f~NADge~Livpq~G~l~l~te~G-----~l~v~pgeiavIPRG~~frve~~~~~-~rgy~ 195 (427)
T COG3508 139 RFFRNADGELLIVPQQGELRLKTELG-----VLEVEPGEIAVIPRGTTFRVELKDGE-ARGYG 195 (427)
T ss_pred hhhhcCCCCEEEEeecceEEEEEeec-----eEEecCCcEEEeeCCceEEEEecCCc-eEEEE
Confidence 44456667999999999999987765 89999999999999999999876554 44443
No 86
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=93.59 E-value=0.87 Score=35.59 Aligned_cols=65 Identities=8% Similarity=0.060 Sum_probs=44.6
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585 97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE 166 (221)
Q Consensus 97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 166 (221)
+.+.++.....-.....-+.+.--+.+.++|+..+...+. ...+.+||+++++.+.++.+...++
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~g~-----~~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQGGR-----EVELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEECCE-----EEEEcCCeEEEEcCCCCEEEEECCC
Confidence 4455555443222211112333566777899999988776 9999999999999999998876543
No 87
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=93.51 E-value=0.53 Score=41.80 Aligned_cols=59 Identities=20% Similarity=0.117 Sum_probs=43.1
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQ 162 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 162 (221)
.+.+.++++..... ...+ +...+++|++|++++...+. +..|++|+++++|++......
T Consensus 234 ~F~~~~~~~~~~~~--~~~~-~~~~il~v~~G~~~i~~~~~-----~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAE--FIQQ-QSALILSVLEGSGRIKSGGK-----TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCcee--eccC-CCcEEEEEEcceEEEEECCE-----EEEEecccEEEEccCCccEEE
Confidence 46777777754321 1123 35889999999999876444 788999999999999866554
No 88
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=93.44 E-value=0.85 Score=33.85 Aligned_cols=65 Identities=22% Similarity=0.186 Sum_probs=43.0
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
.+.||. .+....+.|+.-|++|++++.+.+++ ..+..++|+.+.+|++.--.++-. ++...++.|
T Consensus 29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~---ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C~y 93 (94)
T PF06865_consen 29 VMLPGE---YTFGTSAPERMEVVSGELEVKLPGED---EWQTYSAGESFEVPANSSFDVKVK--EPTAYLCSY 93 (94)
T ss_dssp EE-SEC---EEEEESS-EEEEEEESEEEEEETT-S---S-EEEETT-EEEE-TTEEEEEEES--S-EEEEEEE
T ss_pred EEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCc---ccEEeCCCCeEEECCCCeEEEEEC--cceeeEEEe
Confidence 345555 22334468999999999999998752 278899999999999998887763 555565543
No 89
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.39 E-value=0.21 Score=36.96 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=22.4
Q ss_pred eEEEEEecCCcEEEECCCCeEEEEecCCcc
Q 027585 139 VFYSKVLSAGEMFVIPRGLIHFQQNVGEGK 168 (221)
Q Consensus 139 ~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~ 168 (221)
+..+.+.++||.+++|+|..|+..|.|..-
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i 108 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDNI 108 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSEE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCceE
Confidence 455889999999999999999999998753
No 90
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=93.12 E-value=0.39 Score=35.80 Aligned_cols=69 Identities=17% Similarity=0.073 Sum_probs=44.5
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585 100 NRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN 176 (221)
Q Consensus 100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 176 (221)
..+.++||+......-++..-++||++|++.+ .++ ...+.+|+.+++..|..=.+.+.+ +.++++.+-.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v--~~~-----~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~G 70 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEV--GGE-----EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLGG 70 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEE--TTT-----TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEE--CCC-----cceECCCcEEEECCCceEEEEECC-CCcEEEEEEc
Confidence 46778888864322222336789999999765 343 368999999999977666666653 7777776543
No 91
>PLN02288 mannose-6-phosphate isomerase
Probab=92.81 E-value=0.33 Score=44.97 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=41.0
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCC
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGL 157 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~ 157 (221)
.+++.++++.++.......+.+ .++++|++|++++...+. ..+..|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~~g-p~Illv~~G~~~i~~~~~---~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAVPG-PSVFLVIEGEGVLSTGSS---EDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCCCC-CEEEEEEcCEEEEecCCc---cceEEEeceeEEEEeCCC
Confidence 4678888887775422222344 899999999999864433 113679999999999864
No 92
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=92.68 E-value=1.4 Score=31.86 Aligned_cols=59 Identities=17% Similarity=0.078 Sum_probs=44.0
Q ss_pred CcCCCCCC-CCCcEEEEEEeCEEEEEEEecCCe--EEEEEecCCcEEEECCCCeEEEEecCC
Q 027585 108 GLNPPHSH-PRASESGIVIKGKLLVGFFTTNNV--FYSKVLSAGEMFVIPRGLIHFQQNVGE 166 (221)
Q Consensus 108 g~~~~H~H-p~a~Ei~yVl~G~~~v~~~~~~~~--~~~~~L~~GDv~~~P~g~~H~~~N~g~ 166 (221)
+....|.- .+...-+-|++|++++...+++|. .....+.+|+.-++++...|++...++
T Consensus 14 ~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 14 ALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 34445543 456677999999999998887542 346789999999999999999998765
No 93
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=92.45 E-value=0.68 Score=31.66 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=42.4
Q ss_pred EEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585 102 VDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN 163 (221)
Q Consensus 102 v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 163 (221)
+++.||....++-.. ...+-|.+|++-++..+. ...+.|++||.+.+++|..-+...
T Consensus 2 ~~L~~g~~~~lr~~~--~~~l~v~~G~vWlT~~g~---~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAA--GQRLRVESGRVWLTREGD---PDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCC--CcEEEEccccEEEECCCC---CCCEEECCCCEEEeCCCCEEEEEe
Confidence 356677776666544 344999999999887543 348999999999999998766554
No 94
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.61 E-value=0.14 Score=48.26 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=46.3
Q ss_pred EEEcC-CC-cCCCCCCCCCcEEEEEEeCEEEEEEEecC-------------------C-eEEEEEecCCcEEEECCCCeE
Q 027585 102 VDFAP-GG-LNPPHSHPRASESGIVIKGKLLVGFFTTN-------------------N-VFYSKVLSAGEMFVIPRGLIH 159 (221)
Q Consensus 102 v~l~P-gg-~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-------------------~-~~~~~~L~~GDv~~~P~g~~H 159 (221)
+.+.| |. -.+|||-.- +-+++=++|+=.+.+-.+. | .+....|++||++|||+|.+|
T Consensus 321 vYLTPagSqGfaPHyDdI-eaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IH 399 (629)
T KOG3706|consen 321 VYLTPAGSQGFAPHYDDI-EAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIH 399 (629)
T ss_pred eeecCCCCCCCCCchhhh-hhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCccee
Confidence 44544 44 479999875 6777888998877765432 2 234688999999999999999
Q ss_pred EEEecC
Q 027585 160 FQQNVG 165 (221)
Q Consensus 160 ~~~N~g 165 (221)
......
T Consensus 400 QA~t~~ 405 (629)
T KOG3706|consen 400 QADTPA 405 (629)
T ss_pred eccccc
Confidence 876543
No 95
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=90.94 E-value=1 Score=41.14 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=51.9
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEE-ecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF-TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~-~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 174 (221)
.+.+.+.++++|...-.-.-++ .-++.|++|++++... +. ...+++||+++||+...-.+... +++...+-+
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~~-~SIllv~~G~g~l~~~t~~-----~~~v~rG~V~fI~a~~~i~~~~~-sd~~~~yrA 404 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVDG-PSILLVLKGSGILKTDTDS-----KILVNRGDVLFIPANHPIHLSSS-SDPFLGYRA 404 (411)
T ss_pred ceeEEEeecCCCceEEeecCCC-ceEEEEEecceEEecCCCC-----ceeeccCcEEEEcCCCCceeecc-Ccceeeeec
Confidence 3678888888866533333444 7899999999999877 44 78999999999999987755443 444443333
No 96
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=90.47 E-value=1.3 Score=36.09 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=47.1
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEE---ecC---CeEEEEEecCCcEEEECCCCeEEEEecCCccEE
Q 027585 97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF---TTN---NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKAL 170 (221)
Q Consensus 97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~---~~~---~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~ 170 (221)
+++..+++.||...|+|-|-- .-++=|+.|.-+-.+- .++ .....+.+.+|++- ..+|.+|.+.|.+.....
T Consensus 73 ltV~~~t~~PG~~~p~HnH~~-wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs~ 150 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHLM-WGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRSG 150 (191)
T ss_pred EEEEEEEeCCCcccCCcccch-heeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCccc
Confidence 578999999999999999965 8888888885433222 110 01113455566655 444666666666554333
Q ss_pred EEEEE
Q 027585 171 AFTAF 175 (221)
Q Consensus 171 ~l~~~ 175 (221)
.|-++
T Consensus 151 aiHvy 155 (191)
T COG5553 151 AIHVY 155 (191)
T ss_pred eEEEE
Confidence 33333
No 97
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=89.74 E-value=5.8 Score=31.41 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=55.2
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeC-EEEEEEEecCCeEEEEEec----CCc--EEEECCCCeEEEEecCCccE
Q 027585 97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKG-KLLVGFFTTNNVFYSKVLS----AGE--MFVIPRGLIHFQQNVGEGKA 169 (221)
Q Consensus 97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G-~~~v~~~~~~~~~~~~~L~----~GD--v~~~P~g~~H~~~N~g~~~a 169 (221)
.+....-+.++....+|.= +++|+.+...| .+++.+.+++|+..+.+|. +|+ .++||+|.....+..+...-
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~y 119 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGDY 119 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSSE
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCCE
Confidence 4556666778777777755 56999999988 7999999988887776773 454 68999999998865555555
Q ss_pred EEEEEE
Q 027585 170 LAFTAF 175 (221)
Q Consensus 170 ~~l~~~ 175 (221)
.+++..
T Consensus 120 ~Lvsc~ 125 (139)
T PF06172_consen 120 SLVSCT 125 (139)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555443
No 98
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=89.42 E-value=0.48 Score=43.34 Aligned_cols=63 Identities=25% Similarity=0.265 Sum_probs=47.5
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC--e---------------EEEEEecCCcEEEECCCCeEEEEecC
Q 027585 103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN--V---------------FYSKVLSAGEMFVIPRGLIHFQQNVG 165 (221)
Q Consensus 103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~--~---------------~~~~~L~~GDv~~~P~g~~H~~~N~g 165 (221)
-..+||.+.+||-+. +-+++=..|+=+.+++...+ + ....++.|||++|+|+|.+|+....+
T Consensus 125 ~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae~ 203 (383)
T COG2850 125 FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAED 203 (383)
T ss_pred EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcccc
Confidence 457899999999876 66666667777777765421 1 12478999999999999999988763
Q ss_pred C
Q 027585 166 E 166 (221)
Q Consensus 166 ~ 166 (221)
+
T Consensus 204 d 204 (383)
T COG2850 204 D 204 (383)
T ss_pred c
Confidence 3
No 99
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=89.18 E-value=2.7 Score=37.80 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=43.0
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEE
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQ 162 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 162 (221)
.+++.+.++.. ....-.+ +...+++|++|++++...++ +..|++|+.+++|+...-+..
T Consensus 241 ~F~l~~~~i~~--~~~~~~~-~~~~il~v~eG~~~l~~~~~-----~~~l~~G~s~~ipa~~~~~~i 299 (312)
T COG1482 241 DFALYKWDISG--TAEFIKQ-ESFSILLVLEGEGTLIGGGQ-----TLKLKKGESFFIPANDGPYTI 299 (312)
T ss_pred ceEEEEEeccC--hhhhccC-CCcEEEEEEcCeEEEecCCE-----EEEEcCCcEEEEEcCCCcEEE
Confidence 35667776654 1111112 25999999999999998876 999999999999999554443
No 100
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=88.80 E-value=3.3 Score=36.64 Aligned_cols=54 Identities=15% Similarity=0.006 Sum_probs=40.5
Q ss_pred CcEE-EEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe--cCCccEEEEEEEc
Q 027585 118 ASES-GIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN--VGEGKALAFTAFN 176 (221)
Q Consensus 118 a~Ei-~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N--~g~~~a~~l~~~~ 176 (221)
..|+ ++.+.|++++.++++ ++.|.+.|++++|+|..-.... ....++++.....
T Consensus 73 rrE~giV~lgG~~~V~vdG~-----~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sA 129 (276)
T PRK00924 73 RRELGIINIGGAGTVTVDGE-----TYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSA 129 (276)
T ss_pred CcEEEEEEccceEEEEECCE-----EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEcc
Confidence 3665 667789999999887 8889999999999998765553 2345677665543
No 101
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=87.95 E-value=3 Score=36.47 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=46.3
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEe-cCCeEEEEEecCC--------cEEEECCCCeEEEEecCCc
Q 027585 97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFT-TNNVFYSKVLSAG--------EMFVIPRGLIHFQQNVGEG 167 (221)
Q Consensus 97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~-~~~~~~~~~L~~G--------Dv~~~P~g~~H~~~N~g~~ 167 (221)
+.+..++|++|.....-...+ +-.++.++|++++.+++ + .+.+..- |++++|+|..-.+.+.++
T Consensus 27 ~~~~~l~L~~g~~~~~~~~~~-E~~vv~l~G~~~v~~~g~~-----~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~- 99 (261)
T PF04962_consen 27 MGFGVLRLEAGESLEFELERR-ELGVVNLGGKATVTVDGEE-----FYELGGRESVFDGPPDALYVPRGTKVVIFASTD- 99 (261)
T ss_dssp BECCCEEEECCHCCCCCCCSE-EEEEEEESSSEEEEETTEE-----EEEE-TTSSGGGS--EEEEE-TT--EEEEESST-
T ss_pred cceEEEEecCCCEEeccCCCc-EEEEEEeCCEEEEEeCCce-----EEEecccccccCCCCcEEEeCCCCeEEEEEcCC-
Confidence 345667888888765553332 55567789999999976 3 6677777 999999999988888544
Q ss_pred cEEEEE
Q 027585 168 KALAFT 173 (221)
Q Consensus 168 ~a~~l~ 173 (221)
+++..
T Consensus 100 -ae~~~ 104 (261)
T PF04962_consen 100 -AEFAV 104 (261)
T ss_dssp -EEEEE
T ss_pred -CEEEE
Confidence 55544
No 102
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=86.33 E-value=7.7 Score=32.58 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=49.1
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeE-EEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585 97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVF-YSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT 173 (221)
Q Consensus 97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~ 173 (221)
.......+++|...-..-.+ ...+.+|++|.+.+...+++|+. ....+.+||.+=+..+.++.....-.++++++.
T Consensus 36 ~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~ 112 (230)
T PRK09391 36 LVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRL 112 (230)
T ss_pred ceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEE
Confidence 34566778888765443333 47889999999999988777763 445678999886665544433333334455443
No 103
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=86.15 E-value=7.8 Score=31.52 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=37.0
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe-EEEEEecCCcEEE
Q 027585 100 NRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV-FYSKVLSAGEMFV 152 (221)
Q Consensus 100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~L~~GDv~~ 152 (221)
....+++|...-..-.+ ...+.+|++|.+++...+.+|+ .....+.+||.+-
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g 73 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIG 73 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEe
Confidence 45567777755333233 4789999999999988776664 4456789999873
No 104
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=85.39 E-value=2.4 Score=29.07 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=28.1
Q ss_pred CcEEEEEEeCEEEEEEEecCCeE-EEEEecCCcEE
Q 027585 118 ASESGIVIKGKLLVGFFTTNNVF-YSKVLSAGEMF 151 (221)
Q Consensus 118 a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~ 151 (221)
...+.+|++|.+.+...+.+++. ....+.+||.+
T Consensus 17 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 17 CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred CCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 48999999999999999887753 36788888875
No 105
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=84.66 E-value=4.8 Score=35.24 Aligned_cols=97 Identities=20% Similarity=0.229 Sum_probs=51.3
Q ss_pred eeEEEeeccccCCCcccceEEEEEEEcCCC---cCCCCCCCCC--------cEEEEEE-e---CEEEEEEEecC-CeEEE
Q 027585 79 SAVTPANVLAFPGVNTLGISMNRVDFAPGG---LNPPHSHPRA--------SESGIVI-K---GKLLVGFFTTN-NVFYS 142 (221)
Q Consensus 79 ~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg---~~~~H~Hp~a--------~Ei~yVl-~---G~~~v~~~~~~-~~~~~ 142 (221)
-.|......+.+... .+-+..+. .|+| .-|||.|++. +|+.|-- . |-+.-.+-..+ ..-..
T Consensus 135 R~V~~~i~~~~~~~~--~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~ 211 (261)
T PF04962_consen 135 RTVRNIIDPNVPPAS--RLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEH 211 (261)
T ss_dssp EEEEEEESTTT---S--S-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEE
T ss_pred EEEEEeeCCCCcccc--eEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEE
Confidence 445555544444222 35555555 6655 3699999873 3444442 2 33332222211 12237
Q ss_pred EEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCC
Q 027585 143 KVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHL 179 (221)
Q Consensus 143 ~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~ 179 (221)
+.++-||++.+|+| .|-+.........++++....+
T Consensus 212 ~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~maG~~ 247 (261)
T PF04962_consen 212 YVVRNGDAVLIPSG-YHPVVAAPGYDMYYLWVMAGEN 247 (261)
T ss_dssp EEEETTEEEEESTT-B-SEEEEEESSEEEEEEEESSS
T ss_pred EEEECCCEEEeCCC-CCCcCcCCCcCcEEEEEEEcCC
Confidence 89999999999999 4444333334455888888777
No 106
>PHA02984 hypothetical protein; Provisional
Probab=82.44 E-value=11 Score=33.10 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=42.0
Q ss_pred cEEE--EEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 119 SESG--IVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 119 ~Ei~--yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
.|.+ .+++|+.++.+... ++..+..+++||.|.+.-+.-|.... +++.++++.+-
T Consensus 92 nEy~FvlCl~G~~~I~~~~~-~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~Vi~ 148 (286)
T PHA02984 92 NEYMFVLCLNGKTSIECFNK-GSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLAVIT 148 (286)
T ss_pred ccEEEEEEcCCeEEEEEecC-CceeeeEEecCceEEEEccceEEEEe-CCCceEEEEEE
Confidence 4544 55689999988764 56678999999999999999999875 45566655543
No 107
>PHA02890 hypothetical protein; Provisional
Probab=80.37 E-value=15 Score=32.24 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=46.1
Q ss_pred cEEE--EEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE-EcCCCCeeeeccchhh
Q 027585 119 SESG--IVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA-FNSHLPGAVIVPTTLF 190 (221)
Q Consensus 119 ~Ei~--yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~-~~s~~pg~~~~~~~lf 190 (221)
.|.+ .+++|+.++.+.. +++..+..+++||.+.+.-+.-|.... +.+.++.+ +....| ++..-+-+|
T Consensus 91 nEy~FVlCL~Gs~~In~~~-~d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~Viky~vd~p-fiy~kNVVf 160 (278)
T PHA02890 91 IECFFVACIEGSCKINVNI-GDREISDHIHENQGFIMDVGLDHAIDS---DNVGLFITKFEVDAH-IFYGQNVII 160 (278)
T ss_pred ccEEEEEEeCCeEEEEEec-CCceeeeeeecCceEEEEccceEEEEc---cceeEEEEEEEecce-EEEecceEE
Confidence 4554 4568999998875 366678999999999999999999876 55555554 333333 344433333
No 108
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=80.22 E-value=7.1 Score=31.60 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=35.5
Q ss_pred EEEEcCCCcCCCCCCC-CCcEEEEEEeCEEEEEEEecCCeEE-EEEecCCcEEEE
Q 027585 101 RVDFAPGGLNPPHSHP-RASESGIVIKGKLLVGFFTTNNVFY-SKVLSAGEMFVI 153 (221)
Q Consensus 101 ~v~l~Pgg~~~~H~Hp-~a~Ei~yVl~G~~~v~~~~~~~~~~-~~~L~~GDv~~~ 153 (221)
...+++|...-..--+ ....+.+|++|.+++...+.+|+.. ...+.+||++=.
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGE 62 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeech
Confidence 3456666543222121 2377999999999999988888644 455699997643
No 109
>PHA00672 hypothetical protein
Probab=78.73 E-value=13 Score=29.16 Aligned_cols=69 Identities=9% Similarity=-0.011 Sum_probs=55.3
Q ss_pred cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEE
Q 027585 95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKAL 170 (221)
Q Consensus 95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~ 170 (221)
.|++...+.++.|....--.|. .|-+++.+|.+++..+++ ...|+.-.++.-|+|..-..+...+....
T Consensus 45 ~GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~tdge-----~~rl~g~~~i~~~aG~KragyAHeDT~wt 113 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIGGE-----AVELRGYHVIPASAGRKQAFVAHADTDLT 113 (152)
T ss_pred cceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeCCc-----EEEEecceeeecCCCcccceeeeccceEE
Confidence 3788899999999876665664 455699999999999877 88999999999999988888776555443
No 110
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=78.14 E-value=14 Score=30.05 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=48.3
Q ss_pred CCCCCCCCcEEEEEEeCEEEEEEEecC-----CeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585 111 PPHSHPRASESGIVIKGKLLVGFFTTN-----NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA 174 (221)
Q Consensus 111 ~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-----~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~ 174 (221)
.+-.||..+|.++-+.|+-.+-++..+ .+...+..++|+.+.+-+|++|...-.=+++..++.+
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~vv 140 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFLVV 140 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEEEE
Confidence 334588889999999999888887654 2567899999999999999999664333444555444
No 111
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=77.74 E-value=9.7 Score=26.62 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=35.2
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe-EEEEEecCCcEE
Q 027585 100 NRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV-FYSKVLSAGEMF 151 (221)
Q Consensus 100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~L~~GDv~ 151 (221)
....+++|...-..--+ ...+.+|++|.+.+...+++|+ .....+.+|+.+
T Consensus 18 ~~~~~~~g~~l~~~~~~-~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~ 69 (115)
T cd00038 18 EERRFPAGEVIIRQGDP-ADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLF 69 (115)
T ss_pred eeeeeCCCCEEEcCCCC-CCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCc
Confidence 34566777754222222 3789999999999998887663 445678888876
No 112
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=76.70 E-value=13 Score=32.29 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=58.9
Q ss_pred ceEEEEEEEcCCCc---CCCCCCCCCcEEEEEE---eCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccE
Q 027585 96 GISMNRVDFAPGGL---NPPHSHPRASESGIVI---KGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKA 169 (221)
Q Consensus 96 gis~~~v~l~Pgg~---~~~H~Hp~a~Ei~yVl---~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a 169 (221)
.+.+..-.++||.. .|+|.|++..|..+-. +-.-.+++-++..+....+++--+.++=|+-.+|.-. |...-
T Consensus 176 QL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP~ETRHiv~~NEqAViSP~WSIHSG~--GT~~Y 253 (278)
T COG3717 176 QLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQPQETRHIVMHNEQAVISPPWSIHSGV--GTANY 253 (278)
T ss_pred hhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCCCceeEEEEeccceeeCCCceeecCc--cccce
Confidence 45677778999985 6999999988876543 2334455555544445677888888999999999864 56666
Q ss_pred EEEEEEcCCCC
Q 027585 170 LAFTAFNSHLP 180 (221)
Q Consensus 170 ~~l~~~~s~~p 180 (221)
.+++....+|-
T Consensus 254 tFIWaMaGeN~ 264 (278)
T COG3717 254 TFIWAMAGENQ 264 (278)
T ss_pred EEEEEeccccc
Confidence 77887766654
No 113
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=76.57 E-value=39 Score=29.36 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=57.8
Q ss_pred eEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC----C-eEEEEEecCCcEEEEC
Q 027585 80 AVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN----N-VFYSKVLSAGEMFVIP 154 (221)
Q Consensus 80 ~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~----~-~~~~~~L~~GDv~~~P 154 (221)
.+..++..+ +++.- +.+..++|.+|.....-.-.+ +-.+++++|++++...+.. | |.-.++=++-|++++|
T Consensus 15 ~v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~~~~-E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp 90 (270)
T COG3718 15 LVQDVTPES-AGWEY--VGFRLLRLAAGESATEETGDR-ERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVP 90 (270)
T ss_pred ceEEecCCC-CCcee--EEEEEEEccCCCcccccCCCc-eEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEec
Confidence 344444333 44543 456667889999877766654 6667778999999877653 3 4334555677999999
Q ss_pred CCCeEEEEecCCc
Q 027585 155 RGLIHFQQNVGEG 167 (221)
Q Consensus 155 ~g~~H~~~N~g~~ 167 (221)
.|..-.+...++-
T Consensus 91 ~g~~~~vtA~t~~ 103 (270)
T COG3718 91 AGSAFSVTATTDL 103 (270)
T ss_pred CCceEEEEeecce
Confidence 9999888776553
No 114
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=76.14 E-value=14 Score=29.93 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=40.2
Q ss_pred CCCCCCcEEEEEEeCEE-EEEEEecC------CeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585 113 HSHPRASESGIVIKGKL-LVGFFTTN------NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN 176 (221)
Q Consensus 113 H~Hp~a~Ei~yVl~G~~-~v~~~~~~------~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~ 176 (221)
-.|+..+|.++-+.|+. .+-++..+ .++..+.+.+|+.+.+-+|++|...-.=++++.++.+-.
T Consensus 75 ERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv~~ 145 (165)
T PF04115_consen 75 ERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVVDR 145 (165)
T ss_dssp EE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEEEE
T ss_pred ccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEEeC
Confidence 35788899999999988 55555433 357789999999999999999987554456777776643
No 115
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=75.58 E-value=4.6 Score=36.52 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=37.5
Q ss_pred eEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeec
Q 027585 139 VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIV 185 (221)
Q Consensus 139 ~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~ 185 (221)
+..+-..++|+.+++|.|..|-+.|...+-|+---..+.+|.+++..
T Consensus 261 kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~Vw~ 307 (407)
T KOG2130|consen 261 KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFVWH 307 (407)
T ss_pred CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCceeee
Confidence 44577899999999999999999998777666655667777776655
No 116
>PLN02868 acyl-CoA thioesterase family protein
Probab=75.31 E-value=11 Score=34.89 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=37.9
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEE
Q 027585 100 NRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFV 152 (221)
Q Consensus 100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~ 152 (221)
....+++|..+-.--.+ ...+.+|++|++++...+.+|+.....+++||++=
T Consensus 32 ~~~~~~~Ge~I~~~Gd~-~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG 83 (413)
T PLN02868 32 VPKRYGKGEYVVREGEP-GDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFG 83 (413)
T ss_pred eEEEECCCCEEEeCCCc-CceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEee
Confidence 34566777654333233 47899999999999887776766677889999876
No 117
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=74.64 E-value=8 Score=33.00 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=59.0
Q ss_pred cCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCe--eeecc
Q 027585 109 LNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPG--AVIVP 186 (221)
Q Consensus 109 ~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg--~~~~~ 186 (221)
....|| ++....|++|+......++ ....+.+|||..+.|+|......-.. .+-++.--..--|. -+.++
T Consensus 113 hsGrh~---ad~y~tIL~G~~~~~~~g~---~~~evy~pGd~~~l~rg~a~~y~m~~--~tw~LEY~RG~IP~~lpf~~~ 184 (216)
T PF04622_consen 113 HSGRHW---ADDYFTILSGEQWAWSPGS---LEPEVYKPGDSHHLPRGEAKQYQMPP--GTWALEYGRGWIPSMLPFGFA 184 (216)
T ss_pred CCcceE---eeeEEEEEEEEEEEEcCCC---CCceEeccCCEEEecCceEEEEEeCC--CeEEEEecCCchhhhhHHHHH
Confidence 345555 4788999999998876443 44788999999999999998876643 33333332222232 23344
Q ss_pred chhhcCCCCCCHHHHHhhcCCCHH
Q 027585 187 TTLFASTPSVPNQVLTKTFQVDDD 210 (221)
Q Consensus 187 ~~lf~~~p~~~~~vla~~f~l~~~ 210 (221)
+.+|++ ++-..+-++..+...
T Consensus 185 dt~~sT---lDf~t~~~T~~~~~~ 205 (216)
T PF04622_consen 185 DTLFST---LDFPTLYRTVYITAR 205 (216)
T ss_pred HHHHhc---cchHHHHHHHHHHHH
Confidence 667775 666666666655543
No 118
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.33 E-value=12 Score=27.28 Aligned_cols=43 Identities=30% Similarity=0.298 Sum_probs=35.0
Q ss_pred CCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEE
Q 027585 117 RASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQ 162 (221)
Q Consensus 117 ~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~ 162 (221)
.+.|...|+.|.+++.+.+.. ..++..+|+.+.+|.+.-..++
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs~---dWq~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGSD---DWQVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred CCceEEEEEeeEEEEEcCCCc---ccEEecCCceEEcCCCCeEEEE
Confidence 358999999999999987652 3789999999999988765443
No 119
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=74.03 E-value=35 Score=27.16 Aligned_cols=52 Identities=10% Similarity=0.002 Sum_probs=39.5
Q ss_pred CCCCCCCCcEEEEEEeCEEEEEEEecC------------------CeEEEEEecCCcEEEECCCCeEEEE
Q 027585 111 PPHSHPRASESGIVIKGKLLVGFFTTN------------------NVFYSKVLSAGEMFVIPRGLIHFQQ 162 (221)
Q Consensus 111 ~~H~Hp~a~Ei~yVl~G~~~v~~~~~~------------------~~~~~~~L~~GDv~~~P~g~~H~~~ 162 (221)
.+-.|.+-..+-|+++|+-.+++.... +......|++|+.++|.++..|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 344577788999999999888876432 1112678999999999999999875
No 120
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=73.81 E-value=18 Score=25.29 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=36.2
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-eEEEEEecCCcEEEE
Q 027585 100 NRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-VFYSKVLSAGEMFVI 153 (221)
Q Consensus 100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~L~~GDv~~~ 153 (221)
....+.+|...- +-......+.+|++|.+.+...+.+| ......+.+||.+-.
T Consensus 18 ~~~~~~~g~~l~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (120)
T smart00100 18 EPVRYPAGEVII-RQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGE 71 (120)
T ss_pred eEEEeCCCCEEE-eCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceech
Confidence 345677777542 23334578999999999998776554 345677889997643
No 121
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=72.56 E-value=3.1 Score=37.37 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEEecCCcEEEECCCCeEEEEe
Q 027585 141 YSKVLSAGEMFVIPRGLIHFQQN 163 (221)
Q Consensus 141 ~~~~L~~GDv~~~P~g~~H~~~N 163 (221)
....|+|||.+++|+|.+|.+..
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred cEEecCCCCEEEecCCCceeecc
Confidence 36899999999999999998853
No 122
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=71.86 E-value=4.1 Score=37.71 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=20.8
Q ss_pred EEEEEecCCcEEEECCCCeEEEEe
Q 027585 140 FYSKVLSAGEMFVIPRGLIHFQQN 163 (221)
Q Consensus 140 ~~~~~L~~GDv~~~P~g~~H~~~N 163 (221)
+....|++||++++|+|.+|.+..
T Consensus 236 LN~v~l~pGeaifipAg~~HAyl~ 259 (389)
T PRK15131 236 LNVVKLNPGEAMFLFAETPHAYLQ 259 (389)
T ss_pred eeEEEeCCCCEEEeCCCCCeEEcC
Confidence 446789999999999999999854
No 123
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=71.79 E-value=2.2 Score=37.82 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=18.4
Q ss_pred EEEecCCcEEEECCCCeEEE
Q 027585 142 SKVLSAGEMFVIPRGLIHFQ 161 (221)
Q Consensus 142 ~~~L~~GDv~~~P~g~~H~~ 161 (221)
...+++||++++|+|.+|..
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred ccccCCCCEEEeCCCCcccc
Confidence 67899999999999999983
No 124
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=71.13 E-value=18 Score=28.73 Aligned_cols=52 Identities=21% Similarity=0.092 Sum_probs=41.9
Q ss_pred cEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe---cCCccEEEEEEE
Q 027585 119 SESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN---VGEGKALAFTAF 175 (221)
Q Consensus 119 ~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N---~g~~~a~~l~~~ 175 (221)
.=+.+|++|+=++.++++ .+...+|+.++.+.+.+-..+- ..++|...+.+-
T Consensus 24 p~i~~vlQG~K~~~~g~~-----~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ 78 (155)
T PF06719_consen 24 PSICIVLQGSKRVHLGDQ-----VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLE 78 (155)
T ss_pred CeEEEEEeeeEEEEECCc-----eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEE
Confidence 558999999999999987 9999999999999998875543 345676666553
No 125
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=70.08 E-value=14 Score=32.80 Aligned_cols=46 Identities=9% Similarity=-0.062 Sum_probs=38.1
Q ss_pred cEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCcc
Q 027585 119 SESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGK 168 (221)
Q Consensus 119 ~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~ 168 (221)
.-++++.+|.+++.-.+. . ...+.++..+++|++..|.+.|.....
T Consensus 39 ~~li~v~~G~~~i~~~~g--~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSSG--E--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCCC--c--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 568999999999976543 1 579999999999999999999976544
No 126
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=69.86 E-value=11 Score=27.04 Aligned_cols=70 Identities=21% Similarity=0.350 Sum_probs=38.3
Q ss_pred EEEcCCCcCCCCCCC---CCcEEEEE--Ee--------CEEEEEEEe-cCCeEEEEE-----ecCCcEEEECC-CCeEEE
Q 027585 102 VDFAPGGLNPPHSHP---RASESGIV--IK--------GKLLVGFFT-TNNVFYSKV-----LSAGEMFVIPR-GLIHFQ 161 (221)
Q Consensus 102 v~l~Pgg~~~~H~Hp---~a~Ei~yV--l~--------G~~~v~~~~-~~~~~~~~~-----L~~GDv~~~P~-g~~H~~ 161 (221)
....+|+...||+.. ....+.++ +. |++.+.-.. ..+...... .++|+.++|+. ...|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 345778888888765 33444333 33 333332110 112222333 89999999999 999999
Q ss_pred EecCCccEEE
Q 027585 162 QNVGEGKALA 171 (221)
Q Consensus 162 ~N~g~~~a~~ 171 (221)
...+.+..++
T Consensus 84 ~~v~~~~~R~ 93 (100)
T PF13640_consen 84 TPVGEGGRRY 93 (100)
T ss_dssp EEE-EESEEE
T ss_pred cccCCCCCEE
Confidence 8773333343
No 127
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=68.15 E-value=18 Score=30.12 Aligned_cols=52 Identities=10% Similarity=-0.053 Sum_probs=36.1
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeE-EEEEecCCcEEEE
Q 027585 101 RVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVF-YSKVLSAGEMFVI 153 (221)
Q Consensus 101 ~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~~~ 153 (221)
...+++|...-.. ......+.+|++|.+++...+.+|+. ....+.+||.+-.
T Consensus 33 ~~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 33 LFHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGE 85 (226)
T ss_pred heeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEe
Confidence 3456666654322 22347899999999999988877753 3456889997753
No 128
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=62.19 E-value=76 Score=25.00 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=33.1
Q ss_pred CCCCCCCCCcEEEEEEeCEEEEEEE-ecC-------------------Ce-EEEEEecCCcEEEECCCCeEEEE
Q 027585 110 NPPHSHPRASESGIVIKGKLLVGFF-TTN-------------------NV-FYSKVLSAGEMFVIPRGLIHFQQ 162 (221)
Q Consensus 110 ~~~H~Hp~a~Ei~yVl~G~~~v~~~-~~~-------------------~~-~~~~~L~~GDv~~~P~g~~H~~~ 162 (221)
..+-.|.+-..+-|+++|+=++++. ... ++ .....|++|+.++|-++..|.-.
T Consensus 61 ~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 61 RRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp S-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred cceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 3445688889999999999888883 221 11 12467999999999999999854
No 129
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=61.95 E-value=74 Score=26.28 Aligned_cols=50 Identities=10% Similarity=-0.045 Sum_probs=33.6
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeE-EEEEecCCcEEEE
Q 027585 103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVF-YSKVLSAGEMFVI 153 (221)
Q Consensus 103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~~~ 153 (221)
.+++|...-.- -.....+.+|++|.+++...+++|+. ....+.+||.+-.
T Consensus 41 ~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 41 PIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eecCCCEeECC-CCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 45666543222 22247789999999999988877764 3345589998743
No 130
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=60.68 E-value=50 Score=26.67 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=44.0
Q ss_pred cCCCCCCCCCcEEEEEEeCEEEEEEEecCC--------------------eEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585 109 LNPPHSHPRASESGIVIKGKLLVGFFTTNN--------------------VFYSKVLSAGEMFVIPRGLIHFQQNVGE 166 (221)
Q Consensus 109 ~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~--------------------~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 166 (221)
..-+-.|.+-.++-++++|+=.+.+....+ .....+|++|+..+|=+|.+|.......
T Consensus 60 ~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 60 EKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred hcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 344556777899999999998888775431 1236789999999999999998866554
No 131
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=59.75 E-value=46 Score=27.62 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=35.2
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEE
Q 027585 101 RVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFV 152 (221)
Q Consensus 101 ~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~ 152 (221)
...+++|...- +-......+.+|++|.+++.....+++.....+.+||.+-
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI 82 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh
Confidence 45566666543 2334458899999999999876554555567888999753
No 132
>COG1741 Pirin-related protein [General function prediction only]
Probab=58.52 E-value=1.3e+02 Score=26.56 Aligned_cols=76 Identities=14% Similarity=0.049 Sum_probs=43.6
Q ss_pred ccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCc
Q 027585 88 AFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEG 167 (221)
Q Consensus 88 ~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~ 167 (221)
..|.-... +....+.+++|...+.+ -++..-++||++|++++. ++ .. ..+|-+.+..|.-=.....+..
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~--g~-----~~--~~~~~l~i~~g~~i~l~a~~~~ 233 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN--GQ-----HE--TDGDGLAILDGDEITLVADSPA 233 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc--cc-----cc--ccccceEEecCCeEEEEecCCC
Confidence 34444444 67788888999987776 223367899999987763 22 11 3334333333332223333455
Q ss_pred cEEEEEE
Q 027585 168 KALAFTA 174 (221)
Q Consensus 168 ~a~~l~~ 174 (221)
.++++.+
T Consensus 234 ~a~vLL~ 240 (276)
T COG1741 234 GARVLLL 240 (276)
T ss_pred CeEEEEE
Confidence 5776654
No 133
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=58.32 E-value=38 Score=26.83 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=36.4
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeE-EEEEecCCcEEEEC
Q 027585 100 NRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVF-YSKVLSAGEMFVIP 154 (221)
Q Consensus 100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~~~P 154 (221)
....+++|...-..--+. .-+.+|++|.+.+....++|+. ....+.+||.+=..
T Consensus 24 ~~~~~~~g~~l~~~g~~~-~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~ 78 (214)
T COG0664 24 EVRKLPKGEVLFTEGEEA-DSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGEL 78 (214)
T ss_pred eeEeeCCCCEEEcCCCcC-ceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhH
Confidence 344556664433333333 5589999999999999887753 34468899987554
No 134
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=58.17 E-value=1.1e+02 Score=27.76 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=45.1
Q ss_pred CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcC
Q 027585 111 PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNS 177 (221)
Q Consensus 111 ~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s 177 (221)
..-+..+.+=+++-.+|.+.+.-.-. ...+.+++.-+||+|....+.-.|...-.++.++..
T Consensus 148 safyNsDGDFLiVPQ~G~L~I~TEfG-----rllV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~ 209 (446)
T KOG1417|consen 148 SAFYNSDGDFLIVPQQGRLWITTEFG-----RLLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGA 209 (446)
T ss_pred ceeecCCCCEEEecccCcEEEEeecc-----ceeecccceEEeecccEEEEecCCCCcceEEEEecc
Confidence 33444444555555678777765433 578999999999999999887778877788888754
No 135
>PLN02288 mannose-6-phosphate isomerase
Probab=56.15 E-value=9.3 Score=35.49 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=20.0
Q ss_pred EEEecCCcEEEECCCCeEEEEe
Q 027585 142 SKVLSAGEMFVIPRGLIHFQQN 163 (221)
Q Consensus 142 ~~~L~~GDv~~~P~g~~H~~~N 163 (221)
...|++||.+++|+|.+|.+..
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~ 273 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLS 273 (394)
T ss_pred eEecCCCCEEEecCCCCceecC
Confidence 6899999999999999998864
No 136
>PF13994 PgaD: PgaD-like protein
Probab=55.88 E-value=14 Score=29.01 Aligned_cols=24 Identities=13% Similarity=0.445 Sum_probs=21.9
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhh
Q 027585 195 SVPNQVLTKTFQVDDDLISTIKSK 218 (221)
Q Consensus 195 ~~~~~vla~~f~l~~~~v~~l~~~ 218 (221)
+++++-+|+.|++++++++++++.
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHhC
Confidence 389999999999999999999864
No 137
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=55.52 E-value=28 Score=27.71 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=27.9
Q ss_pred CcEEEEEEeCEEEEEEEecCCeEE-EEEecCCcEEE
Q 027585 118 ASESGIVIKGKLLVGFFTTNNVFY-SKVLSAGEMFV 152 (221)
Q Consensus 118 a~Ei~yVl~G~~~v~~~~~~~~~~-~~~L~~GDv~~ 152 (221)
...+.+|++|.+.+...+++|+.. ...+.+||.+=
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee
Confidence 467899999999999888777643 56789999763
No 138
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=54.15 E-value=15 Score=29.63 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=22.8
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHhh
Q 027585 194 PSVPNQVLTKTFQVDDDLISTIKSK 218 (221)
Q Consensus 194 p~~~~~vla~~f~l~~~~v~~l~~~ 218 (221)
|.+++|-+|++|+++++.++++++.
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhC
Confidence 4699999999999999999999864
No 139
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=54.08 E-value=14 Score=29.19 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=22.7
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHhh
Q 027585 194 PSVPNQVLTKTFQVDDDLISTIKSK 218 (221)
Q Consensus 194 p~~~~~vla~~f~l~~~~v~~l~~~ 218 (221)
|.++++-+|++|+++++.+++|++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 4699999999999999999999864
No 140
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=53.96 E-value=74 Score=26.14 Aligned_cols=63 Identities=10% Similarity=0.009 Sum_probs=46.4
Q ss_pred CCCCCCcEEEEEEeC-EEEEEEEecC-----CeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585 113 HSHPRASESGIVIKG-KLLVGFFTTN-----NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175 (221)
Q Consensus 113 H~Hp~a~Ei~yVl~G-~~~v~~~~~~-----~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~ 175 (221)
-.|+..+|.+.-+.| ...+-+..++ .....+....|+.+.+-+|++|...-.=+++..++++-
T Consensus 74 ERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vvd 142 (171)
T PRK13395 74 ERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVVD 142 (171)
T ss_pred EECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEEe
Confidence 357878999998998 6666665432 24678999999999999999998755444455666654
No 141
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.64 E-value=6.4 Score=33.57 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=34.1
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEe
Q 027585 96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFT 135 (221)
Q Consensus 96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~ 135 (221)
++++..+-++|++++|+|-||+-.-+.=++=|++.+..-+
T Consensus 74 ~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyD 113 (236)
T KOG4281|consen 74 RFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYD 113 (236)
T ss_pred ceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeecc
Confidence 5789999999999999999999777777888998886443
No 142
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=52.36 E-value=54 Score=25.65 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=19.6
Q ss_pred CCCCCCCCCcEEEEEEeCEEEEEEE
Q 027585 110 NPPHSHPRASESGIVIKGKLLVGFF 134 (221)
Q Consensus 110 ~~~H~Hp~a~Ei~yVl~G~~~v~~~ 134 (221)
..+-.|.+-..+-|+++|+=++++.
T Consensus 61 ~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 61 KKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred cchhhhhheEEEEEeecceEEEEEe
Confidence 3445677778999999999888885
No 143
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=50.63 E-value=21 Score=29.43 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=24.0
Q ss_pred CCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECC
Q 027585 117 RASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR 155 (221)
Q Consensus 117 ~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~ 155 (221)
...-++|+++|++.+...++ ...|.+||.+++..
T Consensus 134 ~~~~l~~~~~G~~~i~~~~~-----~~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 134 ASTVLVYVLEGAWSITEGGN-----CISLSAGDLLLIDD 167 (184)
T ss_dssp -SEEEEEESSS-EEECCCEE-----EEEE-TT-EEEEES
T ss_pred CCEEEEEEeeCcEEEecCCC-----ceEcCCCCEEEEeC
Confidence 34778999999877765544 89999999998877
No 144
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=49.99 E-value=25 Score=35.52 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=48.9
Q ss_pred EEEEcCCCcCCC-CCCCCCcEEEEEEeCEEE----------------EEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585 101 RVDFAPGGLNPP-HSHPRASESGIVIKGKLL----------------VGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN 163 (221)
Q Consensus 101 ~v~l~Pgg~~~~-H~Hp~a~Ei~yVl~G~~~----------------v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 163 (221)
..-+++|+...| |.+.+ .-+.|-+.++-. +-|++...+-+.-.|++|+.++||.|.+|...-
T Consensus 140 dfhidfggtsvwyhil~G-~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhAV~T 218 (776)
T KOG1633|consen 140 DFHIDFGGTSVWYHILAG-EKTFYLIPPTCENLELYECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFIPSGWIHAVLT 218 (776)
T ss_pred ccccCCCCcchhhhhhcc-ccceeeeCCcccchhhhhhhhhcccccccccCCccceeEEEEeccCceEecccceeEeeec
Confidence 345667775544 77766 777777766422 112222124456789999999999999999987
Q ss_pred cCCccEEEEEEEcCC
Q 027585 164 VGEGKALAFTAFNSH 178 (221)
Q Consensus 164 ~g~~~a~~l~~~~s~ 178 (221)
.-+.-+...-++.+.
T Consensus 219 p~d~l~fgGnflhsl 233 (776)
T KOG1633|consen 219 PTDCLVFGGNFLHSL 233 (776)
T ss_pred Ccchheeccchhhhh
Confidence 655554444444333
No 145
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=48.89 E-value=86 Score=27.33 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=42.8
Q ss_pred CCcCCCCCCCCCcEEEEE-EeCEEEEEEEecCCeEEEEEecCCcEEEECCCCe--EEEEecCCccEEEEEEE
Q 027585 107 GGLNPPHSHPRASESGIV-IKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLI--HFQQNVGEGKALAFTAF 175 (221)
Q Consensus 107 gg~~~~H~Hp~a~Ei~yV-l~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~--H~~~N~g~~~a~~l~~~ 175 (221)
|....-|+--+..|+..| +-|.+++.++++ +++|...|.+++-.|.. -+-...+..|++++...
T Consensus 64 ~~~~~~~~FLeRRElgiINIG~~G~i~v~g~-----~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~s 130 (278)
T COG3717 64 GTQLGVSYFLERRELGIINIGGPGTITVDGQ-----EYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYVS 130 (278)
T ss_pred cccccccccceeeeeeEEeeCCCceEEECCE-----EEEeccccEEEEecCccceEEeccCCCCcceEEEee
Confidence 334444444344777666 456788888888 99999999999988843 23333455677766543
No 146
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=47.59 E-value=58 Score=25.54 Aligned_cols=66 Identities=14% Similarity=0.288 Sum_probs=44.7
Q ss_pred cCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEE----eCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585 89 FPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVI----KGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN 163 (221)
Q Consensus 89 fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl----~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 163 (221)
-|+++. +....+.+++|.....- +..|+...+ .|.+.+.+.++.| ..++|||.+.+-.|..-.+++
T Consensus 11 ~P~~kN--~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~~----~~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 11 KPGLKN--INVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEEG----CLIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred Chhhhc--ceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCcC----cccCCccEEEecccchhhhcC
Confidence 366664 56667777777643322 225665554 4788888887633 478999999999998877765
No 147
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=47.35 E-value=3.6 Score=41.44 Aligned_cols=59 Identities=22% Similarity=0.171 Sum_probs=41.2
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEeCE-----EEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585 103 DFAPGGLNPPHSHPRASESGIVIKGK-----LLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE 166 (221)
Q Consensus 103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~-----~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~ 166 (221)
..+-|..+++-.||-.++-.|.-++- -++++.. .+++=.-||.++||+|.+|.++|.-.
T Consensus 761 ~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~-----WtfvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 761 CKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEP-----WTFVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred hHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCc-----cchhhcccceEEecCCCcHHhhhhhh
Confidence 34445556666688878888876651 2233332 36677889999999999999999643
No 148
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=45.27 E-value=22 Score=27.42 Aligned_cols=26 Identities=8% Similarity=0.426 Sum_probs=20.4
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhhhC
Q 027585 195 SVPNQVLTKTFQVDDDLISTIKSKFG 220 (221)
Q Consensus 195 ~~~~~vla~~f~l~~~~v~~l~~~~~ 220 (221)
+++|..+|+.+++++++|+++|+..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 49999999999999999999988743
No 149
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=41.99 E-value=15 Score=33.90 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.0
Q ss_pred EEEecCCcEEEECCCCeEEEEecCCc
Q 027585 142 SKVLSAGEMFVIPRGLIHFQQNVGEG 167 (221)
Q Consensus 142 ~~~L~~GDv~~~P~g~~H~~~N~g~~ 167 (221)
+..=++|+.+++|.|.-|...|.+++
T Consensus 269 ei~Qepge~VFvPsGW~hQV~NL~dT 294 (427)
T KOG2131|consen 269 EIFQEPGETVFVPSGWHHQVLNLGDT 294 (427)
T ss_pred hhhccCCceeeccCccccccccccce
Confidence 44568999999999999999999886
No 150
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=41.88 E-value=57 Score=32.97 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=34.0
Q ss_pred EEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEE
Q 027585 99 MNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMF 151 (221)
Q Consensus 99 ~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~ 151 (221)
+....+.||..+-..-.. .+++.+|++|++.+...+.+++.....+++||.+
T Consensus 397 ~~~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCCC-CceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 344567777754333233 4789999999999865332233445679999976
No 151
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=41.65 E-value=28 Score=23.38 Aligned_cols=23 Identities=9% Similarity=0.330 Sum_probs=17.4
Q ss_pred CHHHHHhhcCCCHHHHHHHHhhh
Q 027585 197 PNQVLTKTFQVDDDLISTIKSKF 219 (221)
Q Consensus 197 ~~~vla~~f~l~~~~v~~l~~~~ 219 (221)
.+.-|.+.+|++++++++||+++
T Consensus 45 ~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 45 VENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHc
Confidence 67788889999999999999875
No 152
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=39.81 E-value=61 Score=21.53 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=20.2
Q ss_pred EEEEEecCCeEEEEEecCCcEEEECCCCeE
Q 027585 130 LVGFFTTNNVFYSKVLSAGEMFVIPRGLIH 159 (221)
Q Consensus 130 ~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H 159 (221)
++++-|+-|+..+.+|++|..+.--+|.++
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~ 40 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGGEFHTHRGAIR 40 (54)
T ss_dssp EEEEEETT--EEEEE--TT-EEEETTEEEE
T ss_pred EEEEccCCCCeeeEEECCCCeEEcCccccc
Confidence 467778788889999999999988887664
No 153
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=37.49 E-value=55 Score=32.93 Aligned_cols=48 Identities=21% Similarity=0.386 Sum_probs=35.3
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEE
Q 027585 103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMF 151 (221)
Q Consensus 103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~ 151 (221)
.+.||..+-..-.+- +|+.+|++|.+.+.-.+.+|......|++||.+
T Consensus 446 ~f~pge~iireGd~v-~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDPV-TDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCcc-ceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 345666555555565 899999999998876664455567899999975
No 154
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=33.68 E-value=28 Score=31.93 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.0
Q ss_pred EEEecCCcEEEECCCCeEEEEe
Q 027585 142 SKVLSAGEMFVIPRGLIHFQQN 163 (221)
Q Consensus 142 ~~~L~~GDv~~~P~g~~H~~~N 163 (221)
...|++|+.+++|+|.+|.+..
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 5789999999999999998865
No 155
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=33.61 E-value=1.6e+02 Score=20.21 Aligned_cols=47 Identities=21% Similarity=0.243 Sum_probs=32.1
Q ss_pred EEeCEEEEEEEecCC-eEEEEEecCCcEEEECCCCeEEEEecCCccEEE
Q 027585 124 VIKGKLLVGFFTTNN-VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALA 171 (221)
Q Consensus 124 Vl~G~~~v~~~~~~~-~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~ 171 (221)
-..|...+.+.+.+| .++...+++||..-++....-.+ ..|+..++-
T Consensus 4 ~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i-~iGna~~v~ 51 (77)
T PF13464_consen 4 TATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRI-RIGNAGAVE 51 (77)
T ss_pred EEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEE-EEeCCCcEE
Confidence 345778888886666 67889999999998855544433 445555443
No 156
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=33.15 E-value=48 Score=20.54 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=18.5
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhhhC
Q 027585 195 SVPNQVLTKTFQVDDDLISTIKSKFG 220 (221)
Q Consensus 195 ~~~~~vla~~f~l~~~~v~~l~~~~~ 220 (221)
+.+..-+|+.+|++..+|.++.+.|.
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT---
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 37889999999999999999988764
No 157
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=32.71 E-value=65 Score=31.87 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=33.7
Q ss_pred EEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEE
Q 027585 99 MNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMF 151 (221)
Q Consensus 99 ~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~ 151 (221)
+....-.||.. -.|+-+..+-+.||++|++++-=+++ ..-.|.+||+|
T Consensus 571 f~~~H~APGDL-lYHtGESvDaLcFvVsGSLEVIQDDE----VVAILGKGDVF 618 (971)
T KOG0501|consen 571 FQTNHCAPGDL-LYHTGESVDALCFVVSGSLEVIQDDE----VVAILGKGDVF 618 (971)
T ss_pred HHhccCCCcce-eeecCCccceEEEEEecceEEeecCc----EEEEeecCccc
Confidence 33334455443 23554566789999999999977666 57789999987
No 158
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=32.33 E-value=1e+02 Score=26.39 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEecCCcEEEECCCCeEEEEec
Q 027585 142 SKVLSAGEMFVIPRGLIHFQQNV 164 (221)
Q Consensus 142 ~~~L~~GDv~~~P~g~~H~~~N~ 164 (221)
...+++|++++||...+|.....
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pV 164 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPV 164 (226)
T ss_pred EEecCCCeEEEECCCCceeeeec
Confidence 67889999999999999999775
No 159
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=31.48 E-value=74 Score=24.95 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=20.9
Q ss_pred EEEEEecCCcEEEECCCCeEEEE-ecCCc
Q 027585 140 FYSKVLSAGEMFVIPRGLIHFQQ-NVGEG 167 (221)
Q Consensus 140 ~~~~~L~~GDv~~~P~g~~H~~~-N~g~~ 167 (221)
.....+++||++++...++|.-. |.++.
T Consensus 179 ~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~ 207 (211)
T PF05721_consen 179 WVPVPMKAGDVLFFHSRLIHGSGPNTSDD 207 (211)
T ss_dssp CEEE-BSTTEEEEEETTSEEEEE-B-SSS
T ss_pred eEEeecCCCeEEEEcCCccccCCCCCCcC
Confidence 34678999999999999999774 44443
No 160
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.89 E-value=51 Score=24.37 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhhh-cccccCC
Q 027585 8 HFQLLCCLVLLLILPL-PLYSADP 30 (221)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~d~ 30 (221)
.|-+|..++++|+|++ .++|.|.
T Consensus 5 ~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 5 AFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHh
Confidence 3444444443433333 3344343
No 161
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=26.83 E-value=50 Score=30.07 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=49.8
Q ss_pred ccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC--Ce--------------------------
Q 027585 88 AFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN--NV-------------------------- 139 (221)
Q Consensus 88 ~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~--~~-------------------------- 139 (221)
.+|+.++.++.+.....+.|...|.|.-+. .-++.=+-|+.++.+.-.. +.
T Consensus 241 ~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp~ 319 (355)
T KOG2132|consen 241 SFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFPK 319 (355)
T ss_pred ecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhhH
Confidence 444444433444444444477888886665 6677777888887776432 10
Q ss_pred -----EEEEEecCCcEEEECCCCeEEEEec
Q 027585 140 -----FYSKVLSAGEMFVIPRGLIHFQQNV 164 (221)
Q Consensus 140 -----~~~~~L~~GDv~~~P~g~~H~~~N~ 164 (221)
.....|++||++++|+-..|+.+..
T Consensus 320 ~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~ 349 (355)
T KOG2132|consen 320 FAKARFLDCLLEPGEALFIPPKWWHYVRSL 349 (355)
T ss_pred HHHHHHHHHhcCCchhccccHHHhhhhhhc
Confidence 1135688999999999999998754
No 162
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=24.90 E-value=87 Score=19.12 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=15.3
Q ss_pred CCCHHHHHhhcC-CCHHHHHHH
Q 027585 195 SVPNQVLTKTFQ-VDDDLISTI 215 (221)
Q Consensus 195 ~~~~~vla~~f~-l~~~~v~~l 215 (221)
.+|+|++.+.|. ++.+++-.+
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~ 24 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRL 24 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHH
Confidence 499999999997 787776654
No 163
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=23.76 E-value=85 Score=18.45 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=18.0
Q ss_pred CCHHHHHhhcCCCHHHHHHHHhhh
Q 027585 196 VPNQVLTKTFQVDDDLISTIKSKF 219 (221)
Q Consensus 196 ~~~~vla~~f~l~~~~v~~l~~~~ 219 (221)
++.+-+|...|+..++|.++-++|
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l 26 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKL 26 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHH
Confidence 667789999999999999887665
No 164
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=23.76 E-value=2.1e+02 Score=26.22 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=58.9
Q ss_pred cCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe-EEEEEecCCcEE--E
Q 027585 76 IFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV-FYSKVLSAGEMF--V 152 (221)
Q Consensus 76 ~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~L~~GDv~--~ 152 (221)
..|..+..++.+. ++.-..+.|+.++...+..-+..-+...+-.+++..-++.+..++|+ .-...|++||-+ +
T Consensus 250 ~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~~ 325 (344)
T PRK02290 250 RSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLGY 325 (344)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEE
Confidence 3466666665432 23346678888888776544444355899999999999999998886 446789999955 5
Q ss_pred ECCCCeEEEEec
Q 027585 153 IPRGLIHFQQNV 164 (221)
Q Consensus 153 ~P~g~~H~~~N~ 164 (221)
++.+--|+-...
T Consensus 326 ~~~~~RHfG~~i 337 (344)
T PRK02290 326 LEEAARHFGMAI 337 (344)
T ss_pred ecCCccccccee
Confidence 666677765443
No 165
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=23.43 E-value=1.4e+02 Score=24.58 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=33.2
Q ss_pred EEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585 120 ESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN 163 (221)
Q Consensus 120 Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 163 (221)
=+..-++|+..+.+.. .|..+...|.+||-+++.++.+=.+..
T Consensus 131 ~~~~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 131 LFMLKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp EEEEEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred cEEEEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCCCEEEECC
Confidence 3455678999988887 477888999999999999887776654
No 166
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=23.23 E-value=2.2e+02 Score=20.51 Aligned_cols=34 Identities=12% Similarity=-0.016 Sum_probs=21.9
Q ss_pred CEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585 127 GKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN 163 (221)
Q Consensus 127 G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N 163 (221)
|..... ++|......++.||.+++|....-.+..
T Consensus 43 G~G~~~---~~g~~~~~~vk~GD~Vl~~~~~g~~v~~ 76 (93)
T PF00166_consen 43 GPGRYN---ENGEEVPMDVKVGDKVLFPKYAGTEVKF 76 (93)
T ss_dssp -SEEET---TTSSEEETSS-TTSEEEEETTTSEEEEE
T ss_pred CCcccc---CCCcEeeeeeeeccEEeccccCceEEEE
Confidence 555544 3455556789999999999887555544
No 167
>PF09923 DUF2155: Uncharacterized protein conserved in bacteria (DUF2155); InterPro: IPR019225 This entry contains various hypothetical prokaryotic proteins that have no known function.
Probab=22.94 E-value=2e+02 Score=20.96 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCcEEEECCCCeEEEEe----c-CCccEEEEEEEcCCCCeee-eccchhhcCCCCCC
Q 027585 137 NNVFYSKVLSAGEMFVIPRGLIHFQQN----V-GEGKALAFTAFNSHLPGAV-IVPTTLFASTPSVP 197 (221)
Q Consensus 137 ~~~~~~~~L~~GDv~~~P~g~~H~~~N----~-g~~~a~~l~~~~s~~pg~~-~~~~~lf~~~p~~~ 197 (221)
+|+....++..|+.+.+-.=.++--.. . ++.....+.-....+.+.. .+..|+|++.|.+.
T Consensus 10 tg~~~~~~v~~G~~~~~g~L~i~~~~C~~r~p~~~p~~~Af~~v~~~~~~~~~iF~GWMfassPal~ 76 (90)
T PF09923_consen 10 TGRVTDFEVPVGETVQFGNLTITLRACVSRPPTENPDTDAFVQVTIREQGKREIFSGWMFASSPALN 76 (90)
T ss_pred cCeEEEEEEcCCCEEEEccEEEEhhheecCCCCCCcCccceEEEEEcCCCccccEeeeEEecCcccc
Confidence 567778888888887773211111111 1 1111222222233343333 77889999877654
No 168
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=20.96 E-value=1.1e+02 Score=19.60 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.5
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhh
Q 027585 195 SVPNQVLTKTFQVDDDLISTIKSK 218 (221)
Q Consensus 195 ~~~~~vla~~f~l~~~~v~~l~~~ 218 (221)
+.+.+.||.-||+++.++.++-..
T Consensus 19 ~~~~~~La~~FgIs~stvsri~~~ 42 (53)
T PF13613_consen 19 NLTFQDLAYRFGISQSTVSRIFHE 42 (53)
T ss_pred CCcHhHHhhheeecHHHHHHHHHH
Confidence 488999999999999999887543
No 169
>smart00153 VHP Villin headpiece domain.
Probab=20.65 E-value=89 Score=18.85 Aligned_cols=21 Identities=5% Similarity=0.238 Sum_probs=17.6
Q ss_pred CCHHHHHhhcCCCHHHHHHHH
Q 027585 196 VPNQVLTKTFQVDDDLISTIK 216 (221)
Q Consensus 196 ~~~~vla~~f~l~~~~v~~l~ 216 (221)
++++-..+.||++.++..+|+
T Consensus 2 LsdeeF~~vfgmsr~eF~~LP 22 (36)
T smart00153 2 LSDEDFEEVFGMTREEFYKLP 22 (36)
T ss_pred CCHHHHHHHHCCCHHHHHhCc
Confidence 677888899999999988764
No 170
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=20.38 E-value=2.1e+02 Score=24.18 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEecCCcEEEECCCCeEEEEec
Q 027585 142 SKVLSAGEMFVIPRGLIHFQQNV 164 (221)
Q Consensus 142 ~~~L~~GDv~~~P~g~~H~~~N~ 164 (221)
..+|-+||.+.+|+-..|.....
T Consensus 145 ~VklPAGdLVlypStSlH~VtPV 167 (229)
T COG3128 145 RVKLPAGDLVLYPSTSLHEVTPV 167 (229)
T ss_pred EEeccCCCEEEcccccceecccc
Confidence 67899999999999999998654
Done!