Query 027586
Match_columns 221
No_of_seqs 112 out of 392
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 12:08:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00552 ADEAMc tRNA-specifi 100.0 2.7E-72 5.8E-77 515.3 18.9 201 5-221 1-213 (374)
2 KOG2777 tRNA-specific adenosin 100.0 9.1E-68 2E-72 497.0 14.3 202 4-221 172-382 (542)
3 PF02137 A_deamin: Adenosine-d 100.0 1.3E-58 2.9E-63 420.2 7.6 164 51-221 1-177 (343)
4 COG0590 CumB Cytosine/adenosin 83.6 8.2 0.00018 31.4 8.1 33 47-88 39-71 (152)
5 PRK10860 tRNA-specific adenosi 66.0 72 0.0016 26.5 9.4 15 131-145 83-97 (172)
6 cd01285 nucleoside_deaminase N 51.5 18 0.0004 27.2 3.2 19 130-148 67-85 (109)
7 cd01284 Riboflavin_deaminase-r 44.1 20 0.00044 27.7 2.4 36 34-85 20-55 (115)
8 PF15134 DUF4570: Domain of un 42.8 15 0.00033 28.6 1.5 23 70-95 10-32 (109)
9 PF14737 DUF4470: Domain of un 39.5 23 0.00051 26.3 2.1 46 45-90 23-77 (100)
10 PF08210 APOBEC_N: APOBEC-like 30.2 31 0.00066 29.1 1.5 14 129-142 74-87 (188)
11 PF14216 DUF4326: Domain of un 27.4 27 0.00059 25.8 0.7 8 74-81 78-85 (86)
12 PF02173 pKID: pKID domain; I 26.9 40 0.00087 21.7 1.3 20 75-94 12-31 (41)
13 PF00383 dCMP_cyt_deam_1: Cyti 21.9 25 0.00054 25.6 -0.4 17 131-147 74-90 (102)
No 1
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=100.00 E-value=2.7e-72 Score=515.33 Aligned_cols=201 Identities=43% Similarity=0.656 Sum_probs=168.0
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEeecCC-CCeEEEEEeeCCCccCcCccCCCCCccchhHHHHHHHHH
Q 027586 5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS-KDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA 83 (221)
Q Consensus 5 ~~ad~Ia~~v~~~y~~L~~~gkp~~~e~tvLA~iVl~~~~-~~~~vVSLgTGtKc~~~~~l~~~G~~l~D~HAEVLARR~ 83 (221)
.|||+||++|+++|++||+++||..+||||||||||+++. ++++||||||||||+++++++.+|++||||||||||||+
T Consensus 1 ~~~d~Ia~~v~~~y~~L~k~~kp~~~e~tvLA~iV~~~~~~~~~~vvslgTGtKc~~~~~~~~~G~~lhD~HAEVlArR~ 80 (374)
T smart00552 1 DTGDEISQLVLEKFGSLPKIGKPGLREWTILAGVVMTNGMDNEKQVVSLGTGTKCISGEKLSPNGLVLNDCHAEILARRG 80 (374)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCCCCceeEEEEEEEecCCCceEEEEEecCccccchhhhccCCCEEEeCCHHHHHHHH
Confidence 4799999999999999999999999999999999999865 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCcccccCCCCcceeEeeCCCC-ceEeeCCcEEEEEeccCCCCccccccCcCCCCCCCCC----
Q 027586 84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSR---- 158 (221)
Q Consensus 84 f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~Lk~~v~lhlYiS~~PCGDAsi~~~~~~~~~~~~~---- 158 (221)
|+||||+||+++.+. ..+.||+..+++ +|+||+||+||||||++|||||||+++....++....
T Consensus 81 f~r~l~~el~~~~~~-----------~~~sif~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAs~~~~~~~~~~~~~~~~~~ 149 (374)
T smart00552 81 FLRFLYSELQLFNSS-----------SEDSIFEKNKEGGKYKLKSNVLFHLYISTLPCGDASIFSPLEPLKNDDSKHPVR 149 (374)
T ss_pred HHHHHHHHHHHHhcc-----------CCCceEEECCCCCceEeCCCcEEEEEeccCCccccccccccccccccccccccc
Confidence 999999999987621 134577776654 9999999999999999999999999876543321000
Q ss_pred ----CCCCCCcccccCCccccccccccccceeEeCCCCC--CccceechhHHHHHHHHhhhhhhhccCC
Q 027586 159 ----EGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRG--DTTLSVSCSDKIARWNAVGVQGLFNYNL 221 (221)
Q Consensus 159 ----~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtkPGrg--d~t~smSCSDKlarWnvlGlQGaLLS~~ 221 (221)
....+......+|+.+ ++..|.|||||||| ++|+||||||||+|||||||||||||||
T Consensus 150 ~~~~~~~~~~~~~~~~g~~~-----~~~~~~vrtkpgr~~~~~t~smSCSDKlarwnvlGlQGaLls~~ 213 (374)
T smart00552 150 KNIKRSKLRTKIEIGEGTVP-----VRSSDIVQTWDGIGDGERLLSMSCSDKIARWNVLGVQGALLSHF 213 (374)
T ss_pred cccccccccccccccCCccc-----ccccCccccCCCCCCCCcccccchhHHHHHHHHhhcchHHHHHH
Confidence 0011112223344432 56689999999998 5799999999999999999999999997
No 2
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=100.00 E-value=9.1e-68 Score=496.99 Aligned_cols=202 Identities=43% Similarity=0.691 Sum_probs=172.8
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEeec-CCCCeEEEEEeeCCCccCcCccCCCCCccchhHHHHHHHH
Q 027586 4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISS-PSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARR 82 (221)
Q Consensus 4 ~~~ad~Ia~~v~~~y~~L~~~gkp~~~e~tvLA~iVl~~-~~~~~~vVSLgTGtKc~~~~~l~~~G~~l~D~HAEVLARR 82 (221)
..++|+||++|+++|.+|+++++|..++||||||||++. ...+.+||||||||||++++.|+.+|.+||||||||||||
T Consensus 172 ~~~~~~Ia~lv~~kF~~L~k~~kp~~~~~tvLAgvv~~~~~~~~~~VVslgTGtKcv~g~~ls~~G~iLnDcHAEIlARR 251 (542)
T KOG2777|consen 172 STLGDEIAELVLEKFDELTKNGKPIPREWTVLAGVVMTKRDGEDKKVVSLGTGTKCVSGDKLSPNGLILNDCHAEILARR 251 (542)
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhcccccccceEEEeeccCcccCcceeCCCCCeeecccHHHHHHH
Confidence 568999999999999999999999999999999999987 3457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCcccccCCCCcceeEeeCCCC-ceEeeCCcEEEEEeccCCCCccccccCcCCCCC--C-C--
Q 027586 83 ALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCHSAPRN--F-F-- 156 (221)
Q Consensus 83 ~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~Lk~~v~lhlYiS~~PCGDAsi~~~~~~~~~--~-~-- 156 (221)
+|+||||+||+++.+. ...+||++.+++ +|+||+||.||||||++|||||+|+.......+ . .
T Consensus 252 ~llRfLy~eL~l~~~~-----------~~~Sif~~~~~~~~~~LK~nv~fhLYiS~~PCGdA~i~~~~~~~~~~~~~~~~ 320 (542)
T KOG2777|consen 252 GLLRFLYSELQLYNSE-----------KKDSIFEKSKEGGKFTLKENVLFHLYISTSPCGDARIFLPSEPATKKLKHVNS 320 (542)
T ss_pred HHHHHHHHHHHHhhcc-----------CCCceeeecCCCCceecCCCcEEEEEecCCCCCchhhhCccccccccCCCCCc
Confidence 9999999999998631 134677766655 699999999999999999999999987543222 1 1
Q ss_pred CCCCCCCCcccccCCccccccccccccceeEeCCCC--CCccceechhHHHHHHHHhhhhhhhccCC
Q 027586 157 SREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGR--GDTTLSVSCSDKIARWNAVGVQGLFNYNL 221 (221)
Q Consensus 157 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtkPGr--gd~t~smSCSDKlarWnvlGlQGaLLS~~ 221 (221)
......++.++.++|+.. ++..+.||||||| |++++||||||||+|||||||||||||||
T Consensus 321 ~~~~~~~~~~~~g~g~~~-----~~~~~~V~T~~Gr~~ger~~smSCSDKLaRWNVLGvQGALLsh~ 382 (542)
T KOG2777|consen 321 TRRGQLRTKIESGEGTIP-----VGSPDAVQTKPGRLDGERLLSMSCSDKLARWNVLGVQGALLSHF 382 (542)
T ss_pred hhhhccchhhhccccccc-----cCCCCcccccCCcccCceeeEechHHHHHHHHHHhhHHHHHHHh
Confidence 112233444555666543 6788999999999 99999999999999999999999999997
No 3
>PF02137 A_deamin: Adenosine-deaminase (editase) domain; InterPro: IPR002466 Editase (3.5 from EC) are enzymes that alter mRNA by catalyzing the site-selective deamination of adenosine residue into inosine residue. The editase domain contains the active site and binds three Zn atoms []. Several editases share a common global arrangement of domains, from N to C terminus: two 'double-stranded RNA-specific adenosine deaminase' (DRADA) repeat domains (IPR000607 from INTERPRO), followed by three 'double-stranded RNA binding' (DsRBD) domains (IPR001159 from INTERPRO), followed by the editase domain. Other editases have a simplified domains structure with no DRADA_REP and possibly fewer DSRBD domains. Editase that deaminate cytidine are not detected by this signature.; GO: 0003723 RNA binding, 0004000 adenosine deaminase activity, 0006396 RNA processing; PDB: 1ZY7_B.
Probab=100.00 E-value=1.3e-58 Score=420.21 Aligned_cols=164 Identities=43% Similarity=0.710 Sum_probs=92.4
Q ss_pred EEeeCCCccCcCccCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccCCCcccccCCCCcceeEeeC--CCCceEeeCC
Q 027586 51 ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELG--PTGKYRFREG 128 (221)
Q Consensus 51 SLgTGtKc~~~~~l~~~G~~l~D~HAEVLARR~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~Lk~~ 128 (221)
||||||||+|.++++.+|++||||||||||||||+||||+||+.+...... ...+.||+.. .+++|+||||
T Consensus 1 SLgTGtKcl~~~~~~~~G~~lhD~HAEVLARR~f~r~L~~el~~~~~~~~~-------~~~~sif~~~~~~~~~~~Lk~~ 73 (343)
T PF02137_consen 1 SLGTGTKCLPASKLSSDGRVLHDCHAEVLARRAFLRFLYEELELLLSGGSG-------DKESSIFERNPDGSGKFRLKPG 73 (343)
T ss_dssp EEEE---B--GGG--TTS-S-SB--HHHHHHHHHHHHHHHHHHHHHH-HH--------HHHHSSEEE-TTSS--EEE-TT
T ss_pred CccCCCcccCchhcccCCCEEeeCcHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccCceEeecCCCCceeEeCCC
Confidence 799999999999999999999999999999999999999999998631100 0124566655 4679999999
Q ss_pred cEEEEEeccCCCCccccccCcCCCCCC--CCC---CCCCCCccc---ccCCcccc---ccccccccceeEeCCCCCCccc
Q 027586 129 WQLHLYISQLPCGDASLSSCHSAPRNF--FSR---EGNSLSSVD---ELNGFKDG---IYDSLQHIGRVQRKPGRGDTTL 197 (221)
Q Consensus 129 v~lhlYiS~~PCGDAsi~~~~~~~~~~--~~~---~~~~~~~~~---~~~g~~~~---~~~~~~~~g~vrtkPGrgd~t~ 197 (221)
|+||||||++|||||||+.+...+.+. ... ....+.+.. ...+.... -...++..|++||||||||++.
T Consensus 74 v~lhlY~S~~PCGdAsi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~RtKPgrgd~~~ 153 (343)
T PF02137_consen 74 VKLHLYISQAPCGDASIFPLSSSPWESDPPPESDAQSPLRTKITGAKTVPGEPSDPLRGRANYQQLGIVRTKPGRGDRTP 153 (343)
T ss_dssp EEEEEEESS--TTHHHHS-TT--------------TT--EEEETSSSEEE--SS----------HHHHH-----TT---E
T ss_pred eEEEEEeccCccCccccccccccccccccccccccccccccccCCCcccCCCccccccccccccCCceeeeeccccCCCc
Confidence 999999999999999999986521110 000 000000000 00010000 1134688999999999999999
Q ss_pred eechhHHHHHHHHhhhhhhhccCC
Q 027586 198 SVSCSDKIARWNAVGVQGLFNYNL 221 (221)
Q Consensus 198 smSCSDKlarWnvlGlQGaLLS~~ 221 (221)
||||||||+|||||||||||||||
T Consensus 154 smSCSDKLarW~vlGlQGaLLS~l 177 (343)
T PF02137_consen 154 SMSCSDKLARWNVLGLQGALLSHL 177 (343)
T ss_dssp EE-HHHHHHHHHHH-SSHHHHHTT
T ss_pred ceecccHHHHHHHhccccccHHHh
Confidence 999999999999999999999997
No 4
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=83.61 E-value=8.2 Score=31.41 Aligned_cols=33 Identities=30% Similarity=0.307 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCccCcCccCCCCCccchhHHHHHHHHHHHHHH
Q 027586 47 LEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFF 88 (221)
Q Consensus 47 ~~vVSLgTGtKc~~~~~l~~~G~~l~D~HAEVLARR~f~r~L 88 (221)
-+||+-|-.+..-..+-.. ||||+|.|.+-+-+
T Consensus 39 ~~ii~~~~N~~~~~~dpta---------HAEi~air~a~~~~ 71 (152)
T COG0590 39 GEIIARGHNRREEDNDPTA---------HAEILAIRAAAETL 71 (152)
T ss_pred CCEEEEecCccccCCCccc---------cHHHHHHHHHHHhh
Confidence 4788877777544433211 99999999875444
No 5
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=66.04 E-value=72 Score=26.48 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=11.4
Q ss_pred EEEEeccCCCCcccc
Q 027586 131 LHLYISQLPCGDASL 145 (221)
Q Consensus 131 lhlYiS~~PCGDAsi 145 (221)
.-||+|-.||--++.
T Consensus 83 ~tlY~TlEPC~MC~~ 97 (172)
T PRK10860 83 ATLYVTLEPCVMCAG 97 (172)
T ss_pred cEEEeeCCCcHHHHH
Confidence 468999999965443
No 6
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=51.49 E-value=18 Score=27.25 Aligned_cols=19 Identities=21% Similarity=0.259 Sum_probs=14.3
Q ss_pred EEEEEeccCCCCccccccC
Q 027586 130 QLHLYISQLPCGDASLSSC 148 (221)
Q Consensus 130 ~lhlYiS~~PCGDAsi~~~ 148 (221)
...||+|..||.-++.-..
T Consensus 67 ~~~ly~t~EPC~mC~~ai~ 85 (109)
T cd01285 67 GCTLYTTLEPCPMCAGALL 85 (109)
T ss_pred CeEEEEeCCChHHHHHHHH
Confidence 3679999999977666443
No 7
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=44.06 E-value=20 Score=27.74 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=23.1
Q ss_pred eEEEEEeecCCCCeEEEEEeeCCCccCcCccCCCCCccchhHHHHHHHHHHH
Q 027586 34 VLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALL 85 (221)
Q Consensus 34 vLA~iVl~~~~~~~~vVSLgTGtKc~~~~~l~~~G~~l~D~HAEVLARR~f~ 85 (221)
.++|+|+.. +-+||+.|.-... -..|||+.|.|.+.
T Consensus 20 pvGaviv~~---~g~iv~~g~n~~~-------------~~~HAE~~ai~~a~ 55 (115)
T cd01284 20 PVGCVIVDD---DGEIVGEGYHRKA-------------GGPHAEVNALASAG 55 (115)
T ss_pred CEEEEEEeC---CCeEEEEecCCCC-------------CcccHHHHHHHHHh
Confidence 456666532 2378877665532 24699999988763
No 8
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=42.82 E-value=15 Score=28.56 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=17.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhh
Q 027586 70 IVNDSHAEIVARRALLRFFYTEVLNK 95 (221)
Q Consensus 70 ~l~D~HAEVLARR~f~r~Ly~el~~~ 95 (221)
-|++-|.|||++|.+ |+.+++.-
T Consensus 10 ~Ls~kheEIlsqR~~---LLq~mE~~ 32 (109)
T PF15134_consen 10 QLSKKHEEILSQREM---LLQQMENK 32 (109)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHH
Confidence 478899999999987 55555543
No 9
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=39.47 E-value=23 Score=26.35 Aligned_cols=46 Identities=30% Similarity=0.387 Sum_probs=29.2
Q ss_pred CCeEEEEEeeCCC--------ccCcCccC-CCCCccchhHHHHHHHHHHHHHHHH
Q 027586 45 KDLEVVALGTGTK--------CIGRSLLS-PHGDIVNDSHAEIVARRALLRFFYT 90 (221)
Q Consensus 45 ~~~~vVSLgTGtK--------c~~~~~l~-~~G~~l~D~HAEVLARR~f~r~Ly~ 90 (221)
+++.++=+|.|.- +.+...-. .-=-.|||.++||+||--|+-.+..
T Consensus 23 ~~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlARnlLlL~ll~ 77 (100)
T PF14737_consen 23 EDLNILLLGCGDLRHVLKTLASLPRSYDGRKLHFTLNDINPEVLARNLLLLQLLL 77 (100)
T ss_pred CCceEEEecCccHHHHHHHHHhcccCcccceeEEEEecCcHHHHHHHHHHHHHHH
Confidence 3577777777741 11211111 1234899999999999998877753
No 10
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=30.16 E-value=31 Score=29.07 Aligned_cols=14 Identities=29% Similarity=0.847 Sum_probs=11.1
Q ss_pred cEEEEEeccCCCCc
Q 027586 129 WQLHLYISQLPCGD 142 (221)
Q Consensus 129 v~lhlYiS~~PCGD 142 (221)
+++.+|+|-+||-+
T Consensus 74 y~ITwy~SwSPC~~ 87 (188)
T PF08210_consen 74 YRITWYLSWSPCPE 87 (188)
T ss_dssp EEEEEEESSS--CC
T ss_pred EEEEEEEecCCCcc
Confidence 58999999999999
No 11
>PF14216 DUF4326: Domain of unknown function (DUF4326)
Probab=27.42 E-value=27 Score=25.82 Aligned_cols=8 Identities=25% Similarity=0.708 Sum_probs=7.2
Q ss_pred hHHHHHHH
Q 027586 74 SHAEIVAR 81 (221)
Q Consensus 74 ~HAEVLAR 81 (221)
|||+||++
T Consensus 78 CHgDVL~e 85 (86)
T PF14216_consen 78 CHGDVLAE 85 (86)
T ss_pred CchHHHhh
Confidence 99999985
No 12
>PF02173 pKID: pKID domain; InterPro: IPR003102 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner. CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB [].; GO: 0005515 protein binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1KDX_B.
Probab=26.87 E-value=40 Score=21.71 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027586 75 HAEIVARRALLRFFYTEVLN 94 (221)
Q Consensus 75 HAEVLARR~f~r~Ly~el~~ 94 (221)
+-|||+||-=-|=++++|-.
T Consensus 12 rReiLsRRPSYRKIlndLs~ 31 (41)
T PF02173_consen 12 RREILSRRPSYRKILNDLSS 31 (41)
T ss_dssp HHHHHTTSTHHHHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHHhcc
Confidence 57999999999999988843
No 13
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=21.89 E-value=25 Score=25.62 Aligned_cols=17 Identities=29% Similarity=0.718 Sum_probs=11.8
Q ss_pred EEEEeccCCCCcccccc
Q 027586 131 LHLYISQLPCGDASLSS 147 (221)
Q Consensus 131 lhlYiS~~PCGDAsi~~ 147 (221)
.-||+|..||+-++...
T Consensus 74 ~~lyvt~ePC~~C~~ai 90 (102)
T PF00383_consen 74 CTLYVTLEPCGMCAMAI 90 (102)
T ss_dssp EEEEEEE--BHHHHHHH
T ss_pred cccccCCCCHHHHHHHH
Confidence 66899999999877644
Done!