Query 027586
Match_columns 221
No_of_seqs 112 out of 392
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 20:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zy7_A RNA-specific adenosine 100.0 6.8E-70 2.3E-74 502.3 11.2 206 3-221 22-238 (403)
2 1p6o_A Cytosine deaminase; hyd 65.7 1.4 4.7E-05 35.0 0.2 17 131-147 85-101 (161)
3 1wwr_A TRNA adenosine deaminas 60.4 3.5 0.00012 33.0 1.7 18 131-148 93-110 (171)
4 1z3a_A TRNA-specific adenosine 57.8 5.1 0.00017 31.9 2.3 16 131-146 79-94 (168)
5 2b3j_A TRNA adenosine deaminas 57.6 4.7 0.00016 31.7 2.0 17 131-147 77-93 (159)
6 2a8n_A Cytidine and deoxycytid 56.5 6.7 0.00023 30.1 2.7 18 131-148 74-91 (144)
7 2nx8_A TRNA-specific adenosine 53.7 9.1 0.00031 30.8 3.1 16 131-146 86-101 (179)
8 2g84_A Cytidine and deoxycytid 52.8 8.4 0.00029 31.4 2.8 15 131-145 105-119 (197)
9 1wkq_A Guanine deaminase; doma 51.8 10 0.00034 30.1 3.1 16 131-146 82-97 (164)
10 3dh1_A TRNA-specific adenosine 51.7 9.4 0.00032 31.0 2.9 15 74-88 74-88 (189)
11 3v4k_A DNA DC->DU-editing enzy 48.6 3.6 0.00012 34.2 -0.1 18 129-146 100-117 (203)
12 2nyt_A Probable C->U-editing e 45.3 12 0.0004 30.6 2.5 13 73-85 62-74 (190)
No 1
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.8e-70 Score=502.26 Aligned_cols=206 Identities=35% Similarity=0.546 Sum_probs=163.5
Q ss_pred CcchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEeecCC--CCeEEEEEeeCCCccCcCccCCCCCccchhHHHHHH
Q 027586 3 TECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS--KDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVA 80 (221)
Q Consensus 3 ~~~~ad~Ia~~v~~~y~~L~~~gkp~~~e~tvLA~iVl~~~~--~~~~vVSLgTGtKc~~~~~l~~~G~~l~D~HAEVLA 80 (221)
++.|||+||++|+++|++||+++||...||||||||||+.+. ++++||||||||||+++++++.+|++||||||||||
T Consensus 22 ~~~~ad~Ia~~v~~~f~~L~~~~kp~~~~~tvLA~iV~~~~~~~~~~~vVslgTGtKc~~~~~~~~~G~vlhD~HAEVlA 101 (403)
T 1zy7_A 22 PQVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIIS 101 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTSGGGCCSCEEEEEEEESSCGGGCEEEEEEECCCBCCGGGCCTTSCSCSBCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEEEccCCCCceEEEEEcCCCCccCcccccCCCCeeeeCCHHHHH
Confidence 357899999999999999999999998999999999999752 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCcccccCCCCcceeEeeCCCCceEeeCCcEEEEEeccCCCCccccccCcCCCCCC-----
Q 027586 81 RRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNF----- 155 (221)
Q Consensus 81 RR~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Lk~~v~lhlYiS~~PCGDAsi~~~~~~~~~~----- 155 (221)
||+|+||||+||+.+.... . ....+||++.++++|+||+||+||||||++|||||||+.+.+...+.
T Consensus 102 RRaf~r~L~~ql~~~~~~~-------~-~~~~sif~~~~~~~~~Lk~~v~lhlY~S~~PCGdAsi~~p~~~~~~~~~~~~ 173 (403)
T 1zy7_A 102 RRSLLRFLYTQLELYLNNK-------D-DQKRSIFQKSERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRH 173 (403)
T ss_dssp HHHHHHHHHHHHHHHHHCH-------H-HHHHCSEEECTTSSEEECTTEEEEEEESSCCTTHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHhccc-------c-CCCCceEEECCCCCeEECCCcEEEEEeccCCCCCcccCCccccccccccccC
Confidence 9999999999998774110 0 11345888888889999999999999999999999999765432110
Q ss_pred CC--CCCCCCCcccccCCccccccccccccceeEeCCC--CCCccceechhHHHHHHHHhhhhhhhccCC
Q 027586 156 FS--REGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGLFNYNL 221 (221)
Q Consensus 156 ~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtkPG--rgd~t~smSCSDKlarWnvlGlQGaLLS~~ 221 (221)
+. ..+..+.+++.++|..+. ...+.++|+|| ||++|+||||||||+|||||||||||||||
T Consensus 174 ~~~~~~g~lr~k~~~g~g~~p~-----~~~~~~~~~~gvl~g~~t~smSCSDKlarWnvlGlQGaLLs~f 238 (403)
T 1zy7_A 174 PNRKARGQLRTKIESGEGTIPV-----RSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIF 238 (403)
T ss_dssp ---CCTTCCEEEETTCSSCEEC-----CSSCCCCCHHHHHTTCCCEEECHHHHHHHHHHHCSSHHHHHTT
T ss_pred cchhhccccceeeccCCCCCCC-----CCcccccccccccccCcceeechHHHHHHHHHhccchHHHhhh
Confidence 00 112233333444444321 11234677777 899999999999999999999999999997
No 2
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=65.69 E-value=1.4 Score=35.00 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=12.7
Q ss_pred EEEEeccCCCCcccccc
Q 027586 131 LHLYISQLPCGDASLSS 147 (221)
Q Consensus 131 lhlYiS~~PCGDAsi~~ 147 (221)
..||+|..||+-++.-.
T Consensus 85 ~tlYvT~EPC~mC~~ai 101 (161)
T 1p6o_A 85 TTLYTTLSPCDMCTGAI 101 (161)
T ss_dssp EEEEEEECCCHHHHHHH
T ss_pred cccccCCCCCHHHHHHH
Confidence 46799999998665543
No 3
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=60.43 E-value=3.5 Score=33.05 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=13.8
Q ss_pred EEEEeccCCCCccccccC
Q 027586 131 LHLYISQLPCGDASLSSC 148 (221)
Q Consensus 131 lhlYiS~~PCGDAsi~~~ 148 (221)
.-||+|..||+-++.-..
T Consensus 93 ~tlYvT~EPC~mC~~ai~ 110 (171)
T 1wwr_A 93 CELYVTLEPCIMCSYALV 110 (171)
T ss_dssp EEEEESSCCBHHHHHHHH
T ss_pred eEEEECCCChHHHHHHHH
Confidence 468999999987766443
No 4
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=57.80 E-value=5.1 Score=31.89 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=12.4
Q ss_pred EEEEeccCCCCccccc
Q 027586 131 LHLYISQLPCGDASLS 146 (221)
Q Consensus 131 lhlYiS~~PCGDAsi~ 146 (221)
.-||+|..||+-++.-
T Consensus 79 ~tlYvTlEPC~mC~~a 94 (168)
T 1z3a_A 79 ATLYVTLEPCVMCAGA 94 (168)
T ss_dssp CEEEEEECCCHHHHHH
T ss_pred cEEEEcCCCcHHHHHH
Confidence 3689999999766654
No 5
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=57.61 E-value=4.7 Score=31.71 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=13.2
Q ss_pred EEEEeccCCCCcccccc
Q 027586 131 LHLYISQLPCGDASLSS 147 (221)
Q Consensus 131 lhlYiS~~PCGDAsi~~ 147 (221)
..||+|..||+-++.-.
T Consensus 77 ~tlyvT~EPC~mC~~ai 93 (159)
T 2b3j_A 77 CTLYVTLEPCVMCAGTI 93 (159)
T ss_dssp EEEEEEECCCHHHHHHH
T ss_pred eEEEECCCCcHHHHHHH
Confidence 46899999998776543
No 6
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=56.55 E-value=6.7 Score=30.15 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=13.5
Q ss_pred EEEEeccCCCCccccccC
Q 027586 131 LHLYISQLPCGDASLSSC 148 (221)
Q Consensus 131 lhlYiS~~PCGDAsi~~~ 148 (221)
.-||+|..||+-++.-..
T Consensus 74 ~tly~T~ePC~mC~~ai~ 91 (144)
T 2a8n_A 74 ADLYVTLEPCTMCAAAIS 91 (144)
T ss_dssp CEEEEEECCBHHHHHHHH
T ss_pred eEEEECCCChHHHHHHHH
Confidence 368999999987766443
No 7
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=53.66 E-value=9.1 Score=30.77 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=12.4
Q ss_pred EEEEeccCCCCccccc
Q 027586 131 LHLYISQLPCGDASLS 146 (221)
Q Consensus 131 lhlYiS~~PCGDAsi~ 146 (221)
.-||+|-.||+-++.-
T Consensus 86 ~tlYvTlEPC~mCa~a 101 (179)
T 2nx8_A 86 TTLFVTIEPCVMCSGA 101 (179)
T ss_dssp EEEEEEECCBHHHHHH
T ss_pred eEEEECCCCcHHHHHH
Confidence 4799999999766553
No 8
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=52.83 E-value=8.4 Score=31.40 Aligned_cols=15 Identities=27% Similarity=0.146 Sum_probs=11.5
Q ss_pred EEEEeccCCCCcccc
Q 027586 131 LHLYISQLPCGDASL 145 (221)
Q Consensus 131 lhlYiS~~PCGDAsi 145 (221)
.-||+|..||--+..
T Consensus 105 ~tlYvTlEPC~mCa~ 119 (197)
T 2g84_A 105 CELVTSAEPCVMCFG 119 (197)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred EEEEEeCCCCHHHHH
Confidence 578999999974443
No 9
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=51.83 E-value=10 Score=30.12 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=12.3
Q ss_pred EEEEeccCCCCccccc
Q 027586 131 LHLYISQLPCGDASLS 146 (221)
Q Consensus 131 lhlYiS~~PCGDAsi~ 146 (221)
.-||+|..||.-++.-
T Consensus 82 ~tlYvT~EPC~mCa~a 97 (164)
T 1wkq_A 82 CILYTSCEPCPMCLGA 97 (164)
T ss_dssp EEEEEEECCCHHHHHH
T ss_pred eEEEEeCCChHHHHHH
Confidence 3689999999766553
No 10
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=51.65 E-value=9.4 Score=31.03 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHH
Q 027586 74 SHAEIVARRALLRFF 88 (221)
Q Consensus 74 ~HAEVLARR~f~r~L 88 (221)
.||||.|.|...+++
T Consensus 74 ~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 74 RHAEMVAIDQVLDWC 88 (189)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 599999999887665
No 11
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=48.63 E-value=3.6 Score=34.21 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=15.4
Q ss_pred cEEEEEeccCCCCccccc
Q 027586 129 WQLHLYISQLPCGDASLS 146 (221)
Q Consensus 129 v~lhlYiS~~PCGDAsi~ 146 (221)
+++..|+|-+||-+++-.
T Consensus 100 Y~vTwy~SWSPC~~CA~~ 117 (203)
T 3v4k_A 100 YRVTCFTSWSPCFSCAQE 117 (203)
T ss_pred EEEEEEEeCCChHHHHHH
Confidence 689999999999987653
No 12
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=45.30 E-value=12 Score=30.59 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHH
Q 027586 73 DSHAEIVARRALL 85 (221)
Q Consensus 73 D~HAEVLARR~f~ 85 (221)
-.|||+.|.|.+.
T Consensus 62 ~~HAE~~Ai~~a~ 74 (190)
T 2nyt_A 62 AAHAEEAFFNTIL 74 (190)
T ss_pred CcCHHHHHHHHHH
Confidence 3899999988764
Done!