Query 027587
Match_columns 221
No_of_seqs 216 out of 671
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 12:09:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 2.8E-12 6E-17 91.8 8.0 55 163-217 3-57 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 1.1E-11 2.4E-16 88.6 7.8 56 163-218 3-58 (64)
3 KOG4343 bZIP transcription fac 99.3 1.3E-11 2.9E-16 119.6 8.2 60 158-217 274-333 (655)
4 PF07716 bZIP_2: Basic region 99.2 1.6E-10 3.5E-15 80.5 8.2 52 163-215 3-54 (54)
5 KOG3584 cAMP response element 99.1 6.5E-11 1.4E-15 108.1 6.6 57 157-213 283-339 (348)
6 KOG0709 CREB/ATF family transc 99.1 5.7E-11 1.2E-15 113.6 5.2 61 157-217 243-303 (472)
7 KOG4005 Transcription factor X 98.9 4.5E-09 9.7E-14 94.1 7.4 69 148-217 53-121 (292)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.1 2.1E-07 4.6E-12 71.2 -3.1 59 158-216 23-81 (92)
9 KOG3119 Basic region leucine z 97.5 0.00034 7.4E-09 63.1 7.8 65 153-217 182-246 (269)
10 KOG0837 Transcriptional activa 97.5 0.00033 7.2E-09 63.7 7.5 54 164-217 205-258 (279)
11 KOG4571 Activating transcripti 96.9 0.0033 7.2E-08 57.9 7.9 54 164-217 225-279 (294)
12 KOG4196 bZIP transcription fac 96.3 0.028 6E-07 46.7 8.5 58 160-217 48-112 (135)
13 KOG3863 bZIP transcription fac 95.7 0.01 2.2E-07 59.4 4.1 51 164-214 489-539 (604)
14 KOG1414 Transcriptional activa 88.9 0.017 3.8E-07 54.7 -5.7 57 160-216 149-209 (395)
15 KOG1414 Transcriptional activa 86.6 0.12 2.5E-06 49.1 -1.7 55 163-217 283-338 (395)
16 PRK00888 ftsB cell division pr 85.0 2.6 5.7E-05 33.2 5.6 33 182-214 30-62 (105)
17 PF04977 DivIC: Septum formati 82.5 4.6 0.0001 28.7 5.6 31 182-212 20-50 (80)
18 PRK10884 SH3 domain-containing 82.0 11 0.00023 33.2 8.6 36 183-218 122-157 (206)
19 PHA03162 hypothetical protein; 81.4 1 2.2E-05 37.6 2.0 28 183-210 10-37 (135)
20 PF00170 bZIP_1: bZIP transcri 81.2 16 0.00035 25.6 8.8 56 161-216 5-63 (64)
21 PF01166 TSC22: TSC-22/dip/bun 81.2 2.9 6.2E-05 30.5 4.0 21 187-207 22-42 (59)
22 PHA03155 hypothetical protein; 80.7 2.2 4.8E-05 34.8 3.6 24 187-210 9-32 (115)
23 PF03980 Nnf1: Nnf1 ; InterPr 79.5 4 8.6E-05 31.6 4.7 32 183-214 77-108 (109)
24 PF08172 CASP_C: CASP C termin 78.7 5.2 0.00011 36.1 5.8 53 161-214 83-135 (248)
25 PF06005 DUF904: Protein of un 78.3 5.5 0.00012 29.7 4.8 23 191-213 23-45 (72)
26 smart00340 HALZ homeobox assoc 75.0 7.7 0.00017 26.7 4.4 28 190-217 9-36 (44)
27 TIGR02209 ftsL_broad cell divi 73.5 13 0.00029 27.0 5.9 32 183-214 28-59 (85)
28 PF01166 TSC22: TSC-22/dip/bun 71.6 11 0.00024 27.5 4.8 33 187-219 15-47 (59)
29 PF07558 Shugoshin_N: Shugoshi 70.8 4.6 9.9E-05 27.6 2.6 42 167-209 3-44 (46)
30 PF12709 Kinetocho_Slk19: Cent 70.8 12 0.00027 29.1 5.2 26 188-213 51-76 (87)
31 KOG4005 Transcription factor X 69.6 30 0.00064 32.0 8.2 72 147-218 55-129 (292)
32 PF13851 GAS: Growth-arrest sp 69.3 43 0.00094 29.1 9.0 55 163-217 70-124 (201)
33 PF12808 Mto2_bdg: Micro-tubul 68.9 12 0.00027 26.4 4.5 26 189-214 25-50 (52)
34 PF06005 DUF904: Protein of un 68.5 15 0.00034 27.3 5.2 27 187-213 26-52 (72)
35 PRK13169 DNA replication intia 67.2 11 0.00025 30.2 4.6 31 183-213 26-56 (110)
36 KOG0561 bHLH transcription fac 66.5 7.1 0.00015 37.0 3.7 30 186-215 105-134 (373)
37 KOG4343 bZIP transcription fac 66.4 8.3 0.00018 39.0 4.4 62 156-217 276-340 (655)
38 PF05377 FlaC_arch: Flagella a 66.1 15 0.00033 26.3 4.5 24 191-214 12-35 (55)
39 PF02183 HALZ: Homeobox associ 65.9 20 0.00044 24.4 5.0 27 189-215 15-41 (45)
40 PF01486 K-box: K-box region; 65.2 14 0.0003 28.3 4.6 35 176-210 61-99 (100)
41 PF06698 DUF1192: Protein of u 64.1 18 0.00038 26.2 4.6 30 188-217 23-52 (59)
42 PF12709 Kinetocho_Slk19: Cent 64.1 23 0.00049 27.6 5.5 36 183-218 39-74 (87)
43 PF02344 Myc-LZ: Myc leucine z 62.9 17 0.00036 23.5 3.8 27 191-217 6-32 (32)
44 TIGR02449 conserved hypothetic 62.9 22 0.00048 26.2 5.1 26 191-216 12-37 (65)
45 PF10473 CENP-F_leu_zip: Leuci 62.9 73 0.0016 26.6 8.8 55 162-216 28-82 (140)
46 PF05103 DivIVA: DivIVA protei 61.7 6.5 0.00014 30.6 2.3 31 186-216 25-55 (131)
47 KOG4797 Transcriptional regula 61.3 12 0.00026 30.6 3.7 27 182-208 70-96 (123)
48 PF12999 PRKCSH-like: Glucosid 60.4 67 0.0015 27.9 8.4 41 175-215 135-175 (176)
49 PF06156 DUF972: Protein of un 60.4 22 0.00048 28.3 5.0 29 186-214 29-57 (107)
50 KOG3335 Predicted coiled-coil 60.4 35 0.00075 29.9 6.6 46 164-215 90-135 (181)
51 PF14197 Cep57_CLD_2: Centroso 59.4 35 0.00076 25.1 5.6 37 167-203 28-64 (69)
52 KOG3119 Basic region leucine z 59.3 64 0.0014 29.3 8.5 52 164-215 197-251 (269)
53 KOG0709 CREB/ATF family transc 58.7 21 0.00046 35.4 5.5 58 158-215 248-315 (472)
54 PF06785 UPF0242: Uncharacteri 57.3 16 0.00034 35.2 4.3 26 182-207 197-222 (401)
55 PRK14127 cell division protein 57.1 27 0.00059 28.0 5.1 28 189-216 40-67 (109)
56 PF05377 FlaC_arch: Flagella a 56.8 29 0.00062 24.9 4.6 30 188-217 2-31 (55)
57 KOG4196 bZIP transcription fac 56.8 22 0.00047 29.8 4.6 21 197-217 78-98 (135)
58 PF08781 DP: Transcription fac 55.7 63 0.0014 27.2 7.2 22 178-199 14-35 (142)
59 PF06156 DUF972: Protein of un 55.1 31 0.00067 27.4 5.1 32 186-217 22-53 (107)
60 PRK00888 ftsB cell division pr 54.7 28 0.0006 27.4 4.7 18 182-199 44-61 (105)
61 PF13863 DUF4200: Domain of un 54.6 99 0.0022 23.9 8.5 50 164-213 59-108 (126)
62 KOG2829 E2F-like protein [Tran 54.5 29 0.00062 32.8 5.4 19 181-199 148-166 (326)
63 PF09304 Cortex-I_coil: Cortex 54.4 1.2E+02 0.0025 24.6 8.4 55 164-218 15-69 (107)
64 PF04999 FtsL: Cell division p 54.3 48 0.001 24.9 5.8 28 188-215 44-71 (97)
65 PF11559 ADIP: Afadin- and alp 53.8 1.1E+02 0.0023 24.8 8.2 52 164-215 44-95 (151)
66 PF11500 Cut12: Spindle pole b 53.6 1.4E+02 0.0029 25.5 8.9 58 161-218 80-137 (152)
67 cd07429 Cby_like Chibby, a nuc 50.8 35 0.00075 27.5 4.7 25 194-218 80-104 (108)
68 PRK13169 DNA replication intia 50.8 35 0.00075 27.5 4.7 32 187-218 23-54 (110)
69 PF11382 DUF3186: Protein of u 50.6 23 0.0005 32.6 4.2 32 187-218 33-64 (308)
70 TIGR02894 DNA_bind_RsfA transc 49.9 46 0.00099 28.7 5.6 32 182-213 107-138 (161)
71 KOG0288 WD40 repeat protein Ti 49.6 93 0.002 30.8 8.2 28 185-212 47-74 (459)
72 PF02183 HALZ: Homeobox associ 49.6 49 0.0011 22.5 4.7 30 189-218 8-37 (45)
73 PF11559 ADIP: Afadin- and alp 47.5 68 0.0015 26.0 6.1 49 164-212 58-106 (151)
74 PF07047 OPA3: Optic atrophy 3 46.1 54 0.0012 26.7 5.3 37 164-206 96-132 (134)
75 PF05300 DUF737: Protein of un 46.1 1.1E+02 0.0024 26.7 7.5 53 166-218 114-166 (187)
76 PF10186 Atg14: UV radiation r 45.8 1.8E+02 0.0039 25.2 8.9 33 182-214 66-98 (302)
77 PRK10884 SH3 domain-containing 44.9 76 0.0016 27.9 6.4 35 184-218 130-164 (206)
78 TIGR02449 conserved hypothetic 44.8 56 0.0012 24.1 4.7 16 194-209 29-44 (65)
79 TIGR03752 conj_TIGR03752 integ 44.7 39 0.00085 33.6 5.0 9 197-205 84-92 (472)
80 PF08961 DUF1875: Domain of un 44.2 7.5 0.00016 35.2 0.0 30 188-217 131-160 (243)
81 PRK13922 rod shape-determining 43.9 48 0.001 29.4 5.1 12 197-208 97-108 (276)
82 PF05529 Bap31: B-cell recepto 43.8 1.4E+02 0.0031 25.0 7.8 33 183-215 158-190 (192)
83 COG4026 Uncharacterized protei 43.6 52 0.0011 30.3 5.2 42 169-210 146-187 (290)
84 PF04977 DivIC: Septum formati 42.6 65 0.0014 22.7 4.7 21 185-205 30-50 (80)
85 KOG4571 Activating transcripti 42.3 2E+02 0.0043 27.1 8.9 57 158-214 224-283 (294)
86 COG2433 Uncharacterized conser 41.8 50 0.0011 34.0 5.3 29 189-217 432-460 (652)
87 PF04340 DUF484: Protein of un 41.8 50 0.0011 28.6 4.7 25 190-214 58-85 (225)
88 PF07047 OPA3: Optic atrophy 3 41.6 55 0.0012 26.6 4.7 26 189-214 108-133 (134)
89 PRK11239 hypothetical protein; 41.0 48 0.001 29.8 4.6 28 189-216 186-213 (215)
90 smart00338 BRLZ basic region l 40.8 1.2E+02 0.0027 21.1 8.8 55 163-217 7-64 (65)
91 KOG0982 Centrosomal protein Nu 40.6 1.3E+02 0.0027 30.1 7.6 31 187-217 298-328 (502)
92 PRK09413 IS2 repressor TnpA; R 40.0 60 0.0013 25.5 4.6 27 187-213 79-105 (121)
93 COG2433 Uncharacterized conser 39.9 51 0.0011 33.9 5.0 29 188-216 424-452 (652)
94 PF07407 Seadorna_VP6: Seadorn 38.4 33 0.00071 33.1 3.3 11 188-198 48-58 (420)
95 PRK06569 F0F1 ATP synthase sub 38.3 2.5E+02 0.0054 23.9 8.6 51 158-208 34-84 (155)
96 KOG1318 Helix loop helix trans 38.1 71 0.0015 31.3 5.5 36 183-218 287-322 (411)
97 PF13747 DUF4164: Domain of un 37.4 1.9E+02 0.0041 22.1 8.1 52 163-214 9-60 (89)
98 PF10226 DUF2216: Uncharacteri 37.3 2.9E+02 0.0062 24.6 8.7 56 161-216 19-78 (195)
99 KOG0977 Nuclear envelope prote 37.1 79 0.0017 32.0 5.8 37 180-216 36-79 (546)
100 COG5509 Uncharacterized small 37.0 58 0.0012 24.1 3.6 24 188-211 27-50 (65)
101 TIGR01834 PHA_synth_III_E poly 37.0 48 0.001 31.4 4.1 30 187-216 290-319 (320)
102 smart00243 GAS2 Growth-Arrest- 36.9 16 0.00035 27.7 0.8 11 79-89 56-66 (73)
103 PRK13922 rod shape-determining 36.6 1.3E+02 0.0028 26.7 6.6 25 186-210 69-93 (276)
104 PF14645 Chibby: Chibby family 36.5 63 0.0014 26.0 4.2 23 191-213 76-98 (116)
105 PF06785 UPF0242: Uncharacteri 36.1 1.7E+02 0.0037 28.4 7.6 37 181-217 122-158 (401)
106 PF11932 DUF3450: Protein of u 35.8 3.1E+02 0.0066 24.1 9.0 26 187-212 71-96 (251)
107 cd08533 SAM_PNT-ETS-1,2 Steril 34.9 21 0.00045 26.5 1.1 13 79-91 42-54 (71)
108 PF09726 Macoilin: Transmembra 34.9 2E+02 0.0043 29.9 8.4 6 191-196 550-555 (697)
109 PRK15422 septal ring assembly 34.6 1.1E+02 0.0024 23.5 5.0 20 190-209 22-41 (79)
110 PRK13729 conjugal transfer pil 34.4 1.5E+02 0.0032 29.6 7.2 29 186-214 97-125 (475)
111 cd08531 SAM_PNT-ERG_FLI-1 Ster 34.3 22 0.00047 26.6 1.1 13 79-91 44-56 (75)
112 PF01920 Prefoldin_2: Prefoldi 33.9 1.4E+02 0.003 22.1 5.6 26 190-215 73-98 (106)
113 PF05010 TACC: Transforming ac 32.7 1.1E+02 0.0024 27.0 5.5 49 168-216 156-205 (207)
114 PF07407 Seadorna_VP6: Seadorn 32.6 66 0.0014 31.1 4.3 27 189-215 35-61 (420)
115 PF04568 IATP: Mitochondrial A 32.5 2.5E+02 0.0055 22.2 7.2 19 197-215 80-98 (100)
116 TIGR02894 DNA_bind_RsfA transc 32.2 89 0.0019 26.9 4.6 16 197-212 115-130 (161)
117 cd08203 SAM_PNT Sterile alpha 32.2 26 0.00056 25.2 1.2 13 79-91 40-52 (66)
118 PF07334 IFP_35_N: Interferon- 31.9 65 0.0014 24.5 3.3 13 198-210 5-17 (76)
119 PF14077 WD40_alt: Alternative 31.6 41 0.00089 23.5 2.1 19 187-205 19-37 (48)
120 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.4 2.7E+02 0.0059 22.2 7.8 23 188-210 107-129 (132)
121 TIGR02976 phageshock_pspB phag 31.4 1.1E+02 0.0025 22.9 4.6 31 190-220 39-69 (75)
122 PF04849 HAP1_N: HAP1 N-termin 31.1 74 0.0016 30.0 4.3 28 186-213 160-187 (306)
123 COG1792 MreC Cell shape-determ 30.8 84 0.0018 28.8 4.6 24 187-210 84-107 (284)
124 PF10224 DUF2205: Predicted co 30.4 1.4E+02 0.003 22.8 4.9 27 187-213 31-57 (80)
125 PF10205 KLRAQ: Predicted coil 30.3 1.7E+02 0.0037 23.4 5.7 32 186-217 40-71 (102)
126 cd08757 SAM_PNT_ESE Sterile al 30.1 29 0.00063 25.2 1.2 13 79-91 42-54 (68)
127 PF12718 Tropomyosin_1: Tropom 29.9 1.2E+02 0.0027 24.9 5.1 25 188-212 37-61 (143)
128 PRK11637 AmiB activator; Provi 29.8 3.8E+02 0.0083 25.4 9.0 16 179-194 212-227 (428)
129 PF07888 CALCOCO1: Calcium bin 29.6 3.5E+02 0.0075 27.6 8.9 50 164-213 149-198 (546)
130 PRK09413 IS2 repressor TnpA; R 29.4 1.2E+02 0.0026 23.8 4.7 25 190-214 75-99 (121)
131 PRK13729 conjugal transfer pil 29.1 91 0.002 31.1 4.7 15 189-203 79-93 (475)
132 PF09744 Jnk-SapK_ap_N: JNK_SA 28.9 2.8E+02 0.0061 23.5 7.1 22 190-211 93-114 (158)
133 PF04102 SlyX: SlyX; InterPro 28.1 2E+02 0.0044 20.7 5.4 15 200-214 32-46 (69)
134 TIGR00219 mreC rod shape-deter 27.9 94 0.002 28.3 4.4 29 182-210 79-108 (283)
135 COG1382 GimC Prefoldin, chaper 27.6 1.5E+02 0.0033 24.3 5.1 27 189-215 80-106 (119)
136 PRK14872 rod shape-determining 27.3 79 0.0017 30.1 3.9 21 189-209 60-80 (337)
137 PF11932 DUF3450: Protein of u 27.2 4.3E+02 0.0093 23.2 8.4 25 189-213 59-83 (251)
138 PF06667 PspB: Phage shock pro 27.1 1.5E+02 0.0032 22.4 4.6 29 192-220 41-69 (75)
139 PF06810 Phage_GP20: Phage min 26.7 2.4E+02 0.0052 23.6 6.3 34 184-217 32-68 (155)
140 PF14362 DUF4407: Domain of un 26.6 4.4E+02 0.0096 23.6 8.4 33 185-217 134-166 (301)
141 PRK10963 hypothetical protein; 26.4 99 0.0021 27.0 4.1 27 189-215 54-83 (223)
142 PRK04325 hypothetical protein; 26.4 2.1E+02 0.0045 21.2 5.2 12 188-199 11-22 (74)
143 PF06210 DUF1003: Protein of u 26.2 3.4E+02 0.0073 21.6 7.2 44 172-215 57-102 (108)
144 PF07716 bZIP_2: Basic region 25.9 2.2E+02 0.0047 19.3 7.9 45 164-208 7-54 (54)
145 PRK15422 septal ring assembly 25.9 1.7E+02 0.0036 22.6 4.7 7 201-207 54-60 (79)
146 KOG4797 Transcriptional regula 25.7 1.3E+02 0.0027 24.8 4.2 29 186-214 67-95 (123)
147 cd08540 SAM_PNT-ERG Sterile al 25.6 38 0.00081 25.4 1.1 14 79-92 44-57 (75)
148 cd08532 SAM_PNT-PDEF-like Ster 25.6 37 0.00081 25.5 1.1 41 51-91 10-59 (76)
149 PF14817 HAUS5: HAUS augmin-li 25.5 1.6E+02 0.0034 30.4 5.8 30 189-218 82-111 (632)
150 PF08946 Osmo_CC: Osmosensory 25.4 1.6E+02 0.0034 20.5 4.0 32 185-216 11-42 (46)
151 PF14775 NYD-SP28_assoc: Sperm 25.1 1.2E+02 0.0026 21.7 3.6 19 191-209 38-56 (60)
152 TIGR00993 3a0901s04IAP86 chlor 25.0 1.2E+02 0.0027 31.9 5.0 26 174-199 419-444 (763)
153 PF07106 TBPIP: Tat binding pr 24.9 1.3E+02 0.0028 24.8 4.4 36 180-215 103-138 (169)
154 KOG3433 Protein involved in me 24.7 3.6E+02 0.0078 24.1 7.1 49 165-213 95-143 (203)
155 PF15294 Leu_zip: Leucine zipp 24.7 1.1E+02 0.0023 28.5 4.2 33 182-214 142-174 (278)
156 PRK00736 hypothetical protein; 24.7 2.2E+02 0.0048 20.7 5.0 13 187-199 6-18 (68)
157 PRK02793 phi X174 lysis protei 24.7 2.2E+02 0.0047 20.9 5.1 11 187-197 9-19 (72)
158 KOG2483 Upstream transcription 24.6 1.8E+02 0.0039 26.3 5.4 32 182-213 101-139 (232)
159 PRK00295 hypothetical protein; 24.4 2.4E+02 0.0053 20.5 5.2 12 188-199 7-18 (68)
160 PF10883 DUF2681: Protein of u 24.1 2E+02 0.0043 22.4 4.9 15 195-209 32-46 (87)
161 PF11853 DUF3373: Protein of u 24.1 79 0.0017 31.6 3.4 28 187-214 32-59 (489)
162 PF08738 Gon7: Gon7 family; I 24.1 2.1E+02 0.0045 22.9 5.1 30 186-215 54-84 (103)
163 cd07665 BAR_SNX1 The Bin/Amphi 24.1 1.6E+02 0.0034 26.5 5.0 32 182-213 25-56 (234)
164 COG3879 Uncharacterized protei 24.1 4.3E+02 0.0092 24.3 7.8 46 169-214 54-103 (247)
165 PF00038 Filament: Intermediat 23.9 5.2E+02 0.011 23.0 9.2 35 183-217 220-254 (312)
166 COG4467 Regulator of replicati 23.5 1.8E+02 0.0038 23.8 4.7 23 189-211 32-54 (114)
167 KOG0977 Nuclear envelope prote 23.4 1.2E+02 0.0026 30.7 4.5 32 188-219 164-195 (546)
168 PF14257 DUF4349: Domain of un 23.3 3.5E+02 0.0077 23.7 7.1 39 179-217 155-193 (262)
169 cd08534 SAM_PNT-GABP-alpha Ste 23.3 44 0.00095 25.9 1.1 43 49-91 17-69 (89)
170 PF13805 Pil1: Eisosome compon 23.2 1.6E+02 0.0035 27.2 5.0 29 187-215 166-194 (271)
171 PF09753 Use1: Membrane fusion 23.1 3.6E+02 0.0079 23.7 7.1 39 180-218 25-71 (251)
172 KOG2751 Beclin-like protein [S 23.1 3.5E+02 0.0076 26.9 7.4 49 168-216 146-206 (447)
173 PF10211 Ax_dynein_light: Axon 23.0 3.7E+02 0.0079 23.1 6.9 44 175-218 105-152 (189)
174 PF12925 APP_E2: E2 domain of 23.0 1.6E+02 0.0035 26.0 4.7 37 183-219 71-107 (193)
175 KOG1962 B-cell receptor-associ 22.8 3.5E+02 0.0076 24.3 6.9 26 190-215 183-208 (216)
176 PF05266 DUF724: Protein of un 22.5 4.2E+02 0.0092 22.9 7.2 29 180-208 125-153 (190)
177 PF04728 LPP: Lipoprotein leuc 22.5 2.9E+02 0.0063 19.9 5.1 28 187-214 4-31 (56)
178 COG4942 Membrane-bound metallo 22.5 5.7E+02 0.012 25.2 8.7 33 179-211 52-84 (420)
179 PRK11546 zraP zinc resistance 22.4 4.7E+02 0.01 22.0 8.6 54 164-217 48-113 (143)
180 cd00632 Prefoldin_beta Prefold 22.1 2.5E+02 0.0055 21.4 5.2 23 190-212 81-103 (105)
181 cd08535 SAM_PNT-Tel_Yan Steril 22.1 48 0.001 24.3 1.1 12 79-90 41-52 (68)
182 PF10481 CENP-F_N: Cenp-F N-te 22.0 3.7E+02 0.008 25.4 7.0 52 163-214 16-81 (307)
183 PF04568 IATP: Mitochondrial A 21.8 3.7E+02 0.0081 21.3 6.1 12 198-209 88-99 (100)
184 PF11544 Spc42p: Spindle pole 21.8 3.2E+02 0.007 20.8 5.5 35 180-214 20-54 (76)
185 smart00251 SAM_PNT SAM / Point 21.7 50 0.0011 24.9 1.1 41 50-90 16-66 (82)
186 PF07334 IFP_35_N: Interferon- 21.6 2E+02 0.0044 21.9 4.4 26 189-214 3-28 (76)
187 PF10883 DUF2681: Protein of u 21.6 2.2E+02 0.0047 22.1 4.7 7 202-208 55-61 (87)
188 COG3132 Uncharacterized protei 21.5 1.2E+02 0.0027 27.0 3.7 26 189-214 188-213 (215)
189 PF08172 CASP_C: CASP C termin 21.5 5E+02 0.011 23.5 7.7 40 176-217 85-124 (248)
190 cd08536 SAM_PNT-Mae Sterile al 21.4 49 0.0011 24.1 1.0 13 79-91 40-52 (66)
191 TIGR02209 ftsL_broad cell divi 21.2 3E+02 0.0065 19.7 5.2 22 185-206 37-58 (85)
192 COG4026 Uncharacterized protei 21.2 4.2E+02 0.0091 24.5 7.1 27 189-215 138-164 (290)
193 PF02403 Seryl_tRNA_N: Seryl-t 21.1 2E+02 0.0043 21.8 4.5 31 187-217 68-98 (108)
194 cd07664 BAR_SNX2 The Bin/Amphi 21.1 2E+02 0.0043 25.7 5.0 32 182-213 25-56 (234)
195 PRK04406 hypothetical protein; 21.1 2.8E+02 0.006 20.6 5.1 14 200-213 39-52 (75)
196 cd08538 SAM_PNT-ESE-2-like Ste 21.0 52 0.0011 25.0 1.1 14 79-92 47-60 (78)
197 PF12737 Mating_C: C-terminal 21.0 1.1E+02 0.0023 30.0 3.5 23 180-202 396-418 (419)
198 PRK10803 tol-pal system protei 20.9 1.6E+02 0.0035 26.4 4.5 25 189-213 57-81 (263)
199 PF15070 GOLGA2L5: Putative go 20.9 4E+02 0.0087 27.3 7.7 34 169-202 105-138 (617)
200 PRK09174 F0F1 ATP synthase sub 20.8 5.6E+02 0.012 22.3 8.6 47 158-204 77-123 (204)
201 PF07926 TPR_MLP1_2: TPR/MLP1/ 20.7 4.4E+02 0.0096 21.0 7.9 26 191-216 96-121 (132)
202 PRK05759 F0F1 ATP synthase sub 20.7 4.4E+02 0.0096 21.0 8.0 50 158-207 28-77 (156)
203 PF04999 FtsL: Cell division p 20.6 2.5E+02 0.0055 20.9 4.9 28 190-217 39-66 (97)
204 PRK02119 hypothetical protein; 20.6 2.9E+02 0.0064 20.3 5.1 12 186-197 9-20 (73)
205 PRK10803 tol-pal system protei 20.5 5.6E+02 0.012 23.0 7.8 30 184-213 59-88 (263)
206 PF04859 DUF641: Plant protein 20.3 2.8E+02 0.006 23.0 5.4 32 186-217 94-125 (131)
207 PF14197 Cep57_CLD_2: Centroso 20.3 3.6E+02 0.0078 19.8 5.6 21 193-213 47-67 (69)
208 KOG0837 Transcriptional activa 20.1 4.1E+02 0.0089 24.8 6.9 55 161-217 206-265 (279)
209 cd08542 SAM_PNT-ETS-1 Sterile 20.1 55 0.0012 25.4 1.1 43 49-91 17-69 (88)
210 PRK13454 F0F1 ATP synthase sub 20.1 5.4E+02 0.012 21.7 8.6 48 158-205 55-102 (181)
211 PF07544 Med9: RNA polymerase 20.1 2.4E+02 0.0051 21.1 4.5 23 192-214 58-80 (83)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.37 E-value=2.8e-12 Score=91.84 Aligned_cols=55 Identities=45% Similarity=0.451 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
++|+.+|+++||+||++||.||++|+.+||.+|..|+.+|..|+.++..|..++.
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999988775
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.30 E-value=1.1e-11 Score=88.60 Aligned_cols=56 Identities=43% Similarity=0.479 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
..++.+|+++||+||++||.||+.|+.+||.+|..|+.+|..|+.++..|..++..
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999887753
No 3
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.25 E-value=1.3e-11 Score=119.63 Aligned_cols=60 Identities=43% Similarity=0.464 Sum_probs=52.8
Q ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 158 ~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
.+|.+..||+.|||||||||..||+|||+|+..||.++..|..||+.|+++...|+.+.+
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~ 333 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLD 333 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 578889999999999999999999999999999999999888888887777777765543
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.17 E-value=1.6e-10 Score=80.51 Aligned_cols=52 Identities=46% Similarity=0.537 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
++++.+|. +||++|++||.||++|+.+|+.+|..|+.+|..|..++..|..+
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46777887 99999999999999999999999999999999999999998764
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.14 E-value=6.5e-11 Score=108.10 Aligned_cols=57 Identities=32% Similarity=0.459 Sum_probs=52.2
Q ss_pred CcccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 157 ~~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
...|+...||+-|+.||||.|+.||+|||+|+.|||.+|..|+..|..|-.++..|.
T Consensus 283 ~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLK 339 (348)
T KOG3584|consen 283 QGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLK 339 (348)
T ss_pred ccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 346788899999999999999999999999999999999999999999988887665
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.12 E-value=5.7e-11 Score=113.56 Aligned_cols=61 Identities=31% Similarity=0.372 Sum_probs=57.1
Q ss_pred CcccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 157 ~~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
...|+...||.||+|||.+||+.||+|||+|++.||.+|.....||.+|++++++|...|-
T Consensus 243 TKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~ 303 (472)
T KOG0709|consen 243 TKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNR 303 (472)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccH
Confidence 3467889999999999999999999999999999999999999999999999999998774
No 7
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=98.88 E-value=4.5e-09 Score=94.11 Aligned_cols=69 Identities=38% Similarity=0.382 Sum_probs=59.5
Q ss_pred CCCcccccCCcccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 148 RGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 148 ~~~r~r~~~~~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
.++|||...+++.- ++|-+||++|||..|+.+|.|||+.+.++|.++..|.+||+.|+.+.+.|+..|.
T Consensus 53 ~~~rKr~RL~HLS~-EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 53 QPKRKRRRLDHLSW-EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred chHHHHHhhcccCH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677766666643 6899999999999999999999999999999999999999999988888876653
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.07 E-value=2.1e-07 Score=71.20 Aligned_cols=59 Identities=32% Similarity=0.263 Sum_probs=47.9
Q ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 158 ~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
..+....|..||..|||.+|++||.||..++.+||.++..|+.+...|..++..+..+.
T Consensus 23 ~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~ 81 (92)
T PF03131_consen 23 EEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556779999999999999999999999999999999887776666666665555443
No 9
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.51 E-value=0.00034 Score=63.13 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=54.3
Q ss_pred cccCCcccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 153 RVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 153 r~~~~~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+..-.+.+.+..+-..|..||=+++++||.+.|.-.++...+|..|+.||+.|+.++++|+.++.
T Consensus 182 ~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 182 SKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred ccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555556666666677999999999999999999999999999999999999999998764
No 10
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.50 E-value=0.00033 Score=63.71 Aligned_cols=54 Identities=28% Similarity=0.260 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
.|-.|...+||+.|.+||.||-.++..||.+|..|+-+|..|-..+..|....+
T Consensus 205 ~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~ 258 (279)
T KOG0837|consen 205 IKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVA 258 (279)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 344455679999999999999999999999999888877776655555554443
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=96.95 E-value=0.0033 Score=57.94 Aligned_cols=54 Identities=26% Similarity=0.255 Sum_probs=45.6
Q ss_pred HHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 164 QQRQRRM-IKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 164 ~rr~rR~-ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+++.+|+ +.|...|.|=|.||++-.+.|+.+...|+.+|++||.+..+|..+..
T Consensus 225 ~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ 279 (294)
T KOG4571|consen 225 EKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIR 279 (294)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 45666799999999999999999999999999999999999988764
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.32 E-value=0.028 Score=46.68 Aligned_cols=58 Identities=28% Similarity=0.318 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELES-------LAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 160 e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~-------~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+....|..||-.|||=-|+-||-|+=..-.+||. +|.+|.+||.++..++..+...+.
T Consensus 48 EVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 48 EVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446788888999999999999999888888885 566777777777777766666554
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=95.75 E-value=0.01 Score=59.40 Aligned_cols=51 Identities=33% Similarity=0.351 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.|-.||.=|||.+|+++|+||=..|..||..|..|+.|-++|.++.-++.+
T Consensus 489 IrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~ 539 (604)
T KOG3863|consen 489 IRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDS 539 (604)
T ss_pred hhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999999999998888877655543
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=88.89 E-value=0.017 Score=54.67 Aligned_cols=57 Identities=21% Similarity=0.142 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 027587 160 DKAAQQRQRRMIKNRESAAR---SRERKQAYQVELESLAVRLE-EENEQLLKEKVIRYVTN 216 (221)
Q Consensus 160 e~~~~rr~rR~ikNReSA~r---SR~RKkay~~eLE~~v~~L~-~EN~~L~~~~e~l~~~~ 216 (221)
.+.+.++..|+.+|+..|.. +|.||+.|+.+|+.+|+.|+ .+|..|..++..|.++.
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~ 209 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEA 209 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHH
Confidence 45579999999999999999 99999999999999999999 88887777776666543
No 15
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=86.55 E-value=0.12 Score=49.13 Aligned_cols=55 Identities=33% Similarity=0.442 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Q 027587 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLL-KEKVIRYVTNA 217 (221)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~-~~~e~l~~~~~ 217 (221)
++++++=+++||.+|-++|.|||..+..|+.+...+..+|..|. .+++.|..++.
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~ 338 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVK 338 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHh
Confidence 45667778899999999999999999999999999999999998 66777766554
No 16
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=85.05 E-value=2.6 Score=33.17 Aligned_cols=33 Identities=18% Similarity=0.054 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 182 ERKQAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 182 ~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
...++.+.+++.++..|+.+|..|+++++.|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455667788899999999999999999988875
No 17
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=82.54 E-value=4.6 Score=28.71 Aligned_cols=31 Identities=26% Similarity=0.155 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 182 ERKQAYQVELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 182 ~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
...+..+..|+.++..|+.+|..|+.+++.|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667899999999999999999999988
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.96 E-value=11 Score=33.24 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 183 RKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 183 RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
..+.-+..++..+..|+++|.+|+++++.++.++.+
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666777888888888888777776654
No 19
>PHA03162 hypothetical protein; Provisional
Probab=81.43 E-value=1 Score=37.59 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 183 RKQAYQVELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 183 RKkay~~eLE~~v~~L~~EN~~L~~~~e 210 (221)
+++.-+++|+.++.+|+-||..|++++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566688999999999999999999983
No 20
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=81.22 E-value=16 Score=25.65 Aligned_cols=56 Identities=32% Similarity=0.262 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 161 KAAQQRQRRMIKNRESAARSRERKQ---AYQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 161 ~~~~rr~rR~ikNReSA~rSR~RKk---ay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
+...|+.+=.+.-|.+-.|-...-+ ..+..|+.+...|..++..|..++..|..+|
T Consensus 5 k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 5 KRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456666666666666666555443 4567899999999999999999999998876
No 21
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=81.21 E-value=2.9 Score=30.46 Aligned_cols=21 Identities=43% Similarity=0.433 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLK 207 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~ 207 (221)
.+.+|+.++.+|+.||.-|+.
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666655554
No 22
>PHA03155 hypothetical protein; Provisional
Probab=80.71 E-value=2.2 Score=34.77 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e 210 (221)
-+++|+.++.+|+-||..|++++-
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999874
No 23
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=79.48 E-value=4 Score=31.62 Aligned_cols=32 Identities=31% Similarity=0.251 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 183 RKQAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 183 RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
-|+.+++.|..++..++.+|..|..++..++.
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35667799999999999999999999988765
No 24
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=78.72 E-value=5.2 Score=36.11 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 161 KAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 161 ~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
...-+|-|=+.||.|-=..-|.=+ .-+..|..+|..|+..|-+|-.++.-|++
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~-~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQ-QTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555544333332222 22455555666666666666555555543
No 25
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.32 E-value=5.5 Score=29.67 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027587 191 LESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 191 LE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
|+.++..|+++|..|..+.+.|.
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333444443333333333333
No 26
>smart00340 HALZ homeobox associated leucin zipper.
Probab=74.95 E-value=7.7 Score=26.65 Aligned_cols=28 Identities=29% Similarity=0.164 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
-|..=-+.|.+||.+|.+++++|+.-..
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3555567899999999999999987544
No 27
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=73.52 E-value=13 Score=27.00 Aligned_cols=32 Identities=16% Similarity=-0.032 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 183 RKQAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 183 RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.....+..++.++..++.||.+|+.++..|.+
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566788999999999999999999887764
No 28
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=71.65 E-value=11 Score=27.49 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVTNAEE 219 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~~ 219 (221)
-++-|..++..|++.|.+|..++.-|++.+..|
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe 47 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNASPE 47 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 357788999999999999999999998877655
No 29
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=70.79 E-value=4.6 Score=27.56 Aligned_cols=42 Identities=29% Similarity=0.218 Sum_probs=13.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 167 QRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 209 (221)
Q Consensus 167 ~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~ 209 (221)
.++...|++=|+..-... ..+.+||.++..|..||..|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 345556776665544443 346899999999999999998765
No 30
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=70.75 E-value=12 Score=29.09 Aligned_cols=26 Identities=38% Similarity=0.270 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
+.+|+.++..|..||.+|+.++...+
T Consensus 51 v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 51 VDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544433
No 31
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=69.56 E-value=30 Score=31.97 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=49.9
Q ss_pred CCCCcccccCCcccHHHHHHHHHHHHhhHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 147 GRGKRGRVMLEPLDKAAQQRQRRMIKNRES--AARSRERKQAY-QVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 147 ~~~~r~r~~~~~~e~~~~rr~rR~ikNReS--A~rSR~RKkay-~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
.+.+++-.-....|+...||.|-.+.---+ -+..|.-+-+| +.+|+.+-..|..||..|+++.+.|..+|.+
T Consensus 55 ~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~e 129 (292)
T KOG4005|consen 55 KRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHE 129 (292)
T ss_pred HHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 355555444567788888887766533222 23344455555 5789999999999999999999888877754
No 32
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=69.25 E-value=43 Score=29.08 Aligned_cols=55 Identities=24% Similarity=0.117 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+-...++..++-++-..+-..-++.+..++.++..|+.|++-|..++..+..+..
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erd 124 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERD 124 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777777777888899999999988888888887776654
No 33
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=68.89 E-value=12 Score=26.45 Aligned_cols=26 Identities=23% Similarity=0.043 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.....++..|+.||..|+.+++-++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567788899999999999887764
No 34
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.45 E-value=15 Score=27.25 Aligned_cols=27 Identities=33% Similarity=0.271 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
-+.+|..+...|.++|..|+.+++.|+
T Consensus 26 e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 26 ENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444444
No 35
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=67.15 E-value=11 Score=30.23 Aligned_cols=31 Identities=19% Similarity=0.019 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 183 RKQAYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 183 RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
.=|.++.+|..+-..|+-||..|++.+.++.
T Consensus 26 ~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 26 ALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345667777777778888888888877763
No 36
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=66.55 E-value=7.1 Score=37.01 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
.|+.+||.+--+|--.|.+||+.+.++.-.
T Consensus 105 ~yI~~Le~~Kt~ll~qn~elKr~~~E~~~~ 134 (373)
T KOG0561|consen 105 DYIHQLEGHKTELLPQNGELKRLKLEEDHH 134 (373)
T ss_pred HHHHHHHhcccccccccchHHHHHhhhccC
Confidence 799999988888889999999988776543
No 37
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=66.39 E-value=8.3 Score=39.02 Aligned_cols=62 Identities=19% Similarity=0.048 Sum_probs=49.3
Q ss_pred CCcccHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 156 LEPLDKAAQQRQRRMIKNRESAARSRER---KQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 156 ~~~~e~~~~rr~rR~ikNReSA~rSR~R---Kkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+..+-++..|..|-.+.-..|-++-.+- =++.+..|+.+-+.|+.||..|++++..|..||-
T Consensus 276 d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~ 340 (655)
T KOG4343|consen 276 DIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQ 340 (655)
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCc
Confidence 4556677777777777777776665544 4578899999999999999999999999988764
No 38
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=66.07 E-value=15 Score=26.34 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 191 LESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 191 LE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
|+..+..++.||+.|+..++.+..
T Consensus 12 ~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 12 IESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677777776666654
No 39
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.92 E-value=20 Score=24.36 Aligned_cols=27 Identities=26% Similarity=0.094 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
+.|......|..||..|+.++..|...
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777777777777777777776543
No 40
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.25 E-value=14 Score=28.27 Aligned_cols=35 Identities=37% Similarity=0.376 Sum_probs=25.8
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 176 SAARSRERKQ----AYQVELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 176 SA~rSR~RKk----ay~~eLE~~v~~L~~EN~~L~~~~e 210 (221)
+-.+-|.||. ..+..|..++..|.++|..|+.++.
T Consensus 61 aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 61 ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445556664 3566788899999999999988875
No 41
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=64.09 E-value=18 Score=26.24 Aligned_cols=30 Identities=27% Similarity=0.164 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+++|+.++..|+.|..+++..+..-....+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999888876654433
No 42
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=64.09 E-value=23 Score=27.61 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 183 RKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 183 RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
=|+-|-...+.+|..|+.+|..|.++++.|+.+.+.
T Consensus 39 LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 39 LKKSYEARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377788889999999999999999999999987654
No 43
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=62.94 E-value=17 Score=23.52 Aligned_cols=27 Identities=26% Similarity=0.069 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 191 LESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 191 LE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
|-.+.+.|+...++|+.+++.|++-||
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlrnS~a 32 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLRNSCA 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445667888889999999999988765
No 44
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=62.93 E-value=22 Score=26.18 Aligned_cols=26 Identities=23% Similarity=0.150 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 191 LESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 191 LE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
|=....+|+.||..|+.++..+..+.
T Consensus 12 Li~~~~~L~~EN~~Lr~q~~~~~~ER 37 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQEKTWREER 37 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566677777777766665544
No 45
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=62.90 E-value=73 Score=26.61 Aligned_cols=55 Identities=20% Similarity=0.058 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 162 AAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 162 ~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
..++...-...|++.+-.--.-+|+.+..|+.++..+..+...|...+..+.+++
T Consensus 28 ~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 28 SLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777899999888888999999999988887777777777776666554
No 46
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=61.71 E-value=6.5 Score=30.65 Aligned_cols=31 Identities=26% Similarity=0.167 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
.|++.|...+..|..+|..|+.++..|..+.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l 55 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQL 55 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5777777777777777777777776665443
No 47
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=61.32 E-value=12 Score=30.57 Aligned_cols=27 Identities=33% Similarity=0.198 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 182 ERKQAYQVELESLAVRLEEENEQLLKE 208 (221)
Q Consensus 182 ~RKkay~~eLE~~v~~L~~EN~~L~~~ 208 (221)
.-=|+.+.+|+.++..|++||.-|+.-
T Consensus 70 e~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334566778888888999988877753
No 48
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=60.42 E-value=67 Score=27.92 Aligned_cols=41 Identities=22% Similarity=0.078 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 175 ESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 175 eSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
+..+.-=++|++|+.+-+.+...++.+..+|+.++...+.+
T Consensus 135 ~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 135 EIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444455678899888888888888888888888877654
No 49
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=60.41 E-value=22 Score=28.29 Aligned_cols=29 Identities=28% Similarity=0.068 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.++.+|..+-..|+-||..|+..+..+..
T Consensus 29 ~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 29 KQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555555555566666665555543
No 50
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=60.39 E-value=35 Score=29.92 Aligned_cols=46 Identities=24% Similarity=0.166 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
-.|++|..++++ ...+..+.+|+.+|..|+.+..++++.+.+|.+.
T Consensus 90 y~R~~~~e~~ke------e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~ 135 (181)
T KOG3335|consen 90 YWRQARKERKKE------EKRKQEIMELRLKVEKLENAIAELTKFFSQLHSK 135 (181)
T ss_pred hHHhhhcchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555543 3334456778888888888888888888877543
No 51
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=59.35 E-value=35 Score=25.12 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=18.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 167 QRRMIKNRESAARSRERKQAYQVELESLAVRLEEENE 203 (221)
Q Consensus 167 ~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~ 203 (221)
.+++.+-|.+|.++=..+-.-+.+|-.++..|+.|+.
T Consensus 28 ~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 28 NKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666555544444444444444444433
No 52
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=59.26 E-value=64 Score=29.28 Aligned_cols=52 Identities=25% Similarity=0.221 Sum_probs=32.7
Q ss_pred HHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 164 QQRQRRMI---KNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 164 ~rr~rR~i---kNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
+||.|-.+ |-|..++.-=..-+..+.+||.+-..|+.++.+|++++..|+.-
T Consensus 197 err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 197 ERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 33344433334445566788888888888888888888777643
No 53
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=58.69 E-value=21 Score=35.36 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=47.1
Q ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 158 PLDKAAQQRQRRMIKNRESAARSRERKQAY----------QVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 158 ~~e~~~~rr~rR~ikNReSA~rSR~RKkay----------~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
..-+++.|+.|-|++--||-+++...=... =.+|.++|.+|+..|..|..++..|+..
T Consensus 248 riLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 248 RILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 444788999999999999998887654422 2589999999999999999999888743
No 54
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=57.35 E-value=16 Score=35.20 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 182 ERKQAYQVELESLAVRLEEENEQLLK 207 (221)
Q Consensus 182 ~RKkay~~eLE~~v~~L~~EN~~L~~ 207 (221)
.+||+|+..||.+|.+|..|...|..
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999888754
No 55
>PRK14127 cell division protein GpsB; Provisional
Probab=57.05 E-value=27 Score=28.04 Aligned_cols=28 Identities=14% Similarity=0.014 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
+.|..++..|+++|.+|+.++.++..+.
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666666666666666666543
No 56
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=56.77 E-value=29 Score=24.92 Aligned_cols=30 Identities=23% Similarity=0.079 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+++||.++..++.....++++++++.....
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888888876654
No 57
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=56.77 E-value=22 Score=29.78 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027587 197 RLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 197 ~L~~EN~~L~~~~e~l~~~~~ 217 (221)
.|+.+|..|..+++.|..+|+
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s 98 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENS 98 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666654
No 58
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=55.67 E-value=63 Score=27.19 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027587 178 ARSRERKQAYQVELESLAVRLE 199 (221)
Q Consensus 178 ~rSR~RKkay~~eLE~~v~~L~ 199 (221)
+.+-++|++|+.+|..+...|+
T Consensus 14 ~~rI~~K~~~LqEL~~Q~va~k 35 (142)
T PF08781_consen 14 RERIKKKKEQLQELILQQVAFK 35 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445889999999998877654
No 59
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=55.07 E-value=31 Score=27.45 Aligned_cols=32 Identities=25% Similarity=0.038 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+-+.+|...+..|.+||.+|+-+++.|+....
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888888888888776554
No 60
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.75 E-value=28 Score=27.40 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027587 182 ERKQAYQVELESLAVRLE 199 (221)
Q Consensus 182 ~RKkay~~eLE~~v~~L~ 199 (221)
.+.++....|+.+|..|+
T Consensus 44 ~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 44 AKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333444444555554444
No 61
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=54.56 E-value=99 Score=23.93 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
+.+..|-++.-+...+.+..|.+-+..|..++..|+.+...|...+..+.
T Consensus 59 ~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 59 EAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666677777777777888888888888777776553
No 62
>KOG2829 consensus E2F-like protein [Transcription]
Probab=54.50 E-value=29 Score=32.78 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027587 181 RERKQAYQVELESLAVRLE 199 (221)
Q Consensus 181 R~RKkay~~eLE~~v~~L~ 199 (221)
-++|++|+.||..+|..++
T Consensus 148 I~kK~a~lqEl~~q~~~fk 166 (326)
T KOG2829|consen 148 IKKKAAQLQELIEQVSAFK 166 (326)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3789999999999998765
No 63
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=54.40 E-value=1.2e+02 Score=24.63 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
.-+..-+..-.|...-|+..=...-++|+..+..|+.+|..+.+++.+|+.+.++
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~e 69 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDE 69 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777788888887767777788888888888888888888888776654
No 64
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=54.26 E-value=48 Score=24.90 Aligned_cols=28 Identities=32% Similarity=0.226 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
++.|+.+..+|+.||.+|+-+...|.+-
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 7888999999999999999988887653
No 65
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=53.83 E-value=1.1e+02 Score=24.83 Aligned_cols=52 Identities=23% Similarity=0.210 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
.....|=...||.......++..-+..|+..+..|+.++..+.+++..+...
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~ 95 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEK 95 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677777777777777777777777777777777666555443
No 66
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=53.58 E-value=1.4e+02 Score=25.51 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 161 KAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 161 ~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
...++..+++|+.|--|+---+.|-+-..+|..++...++...++.+.+.+|-+..+.
T Consensus 80 ~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 80 EKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777787766665555666777888888877777777888888887776654
No 67
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=50.84 E-value=35 Score=27.54 Aligned_cols=25 Identities=32% Similarity=0.174 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 194 LAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 194 ~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
+..+|++||+-|+-+++-|..-.++
T Consensus 80 k~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999998888765554
No 68
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=50.76 E-value=35 Score=27.46 Aligned_cols=32 Identities=25% Similarity=0.012 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
-+.+|...|..|-+||..|+-++.-|+....+
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888888888888777766554
No 69
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=50.64 E-value=23 Score=32.62 Aligned_cols=32 Identities=25% Similarity=0.090 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
-++.|+.++..|++||.+|+.+++.+..+++.
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~ 64 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLNA 64 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777777777666543
No 70
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=49.93 E-value=46 Score=28.68 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 182 ERKQAYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 182 ~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
.+.+..+.+|..++..|+.||..|.+++..+.
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777777777766655443
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=49.60 E-value=93 Score=30.79 Aligned_cols=28 Identities=43% Similarity=0.351 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
++.+.++|..+.+|++||..|..+....
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788999999999999988776553
No 72
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.58 E-value=49 Score=22.47 Aligned_cols=30 Identities=23% Similarity=0.102 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
+-|-.....|+.+|..|.++++.|+.+..+
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888999999998888877643
No 73
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=47.49 E-value=68 Score=25.98 Aligned_cols=49 Identities=27% Similarity=0.225 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
..+.+++...-+.......|=+.-+.++|.++..++..-..|.+++..+
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333333444444455544444444444444444333
No 74
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=46.12 E-value=54 Score=26.69 Aligned_cols=37 Identities=30% Similarity=0.202 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLL 206 (221)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~ 206 (221)
-.|..|..++|+.+ .++.++.|+.++..|+.+.+++.
T Consensus 96 ~~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 96 YWRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455544444432 33456677777777777666654
No 75
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=46.08 E-value=1.1e+02 Score=26.72 Aligned_cols=53 Identities=19% Similarity=0.272 Sum_probs=39.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 166 RQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 166 r~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
...=+++-|.++..-|.+-+.|..+||.+=..|+....=.+.++..|...|++
T Consensus 114 l~~ai~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e 166 (187)
T PF05300_consen 114 LTRAILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAE 166 (187)
T ss_pred hHHHHHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777777788888899999988888887777777777777777654
No 76
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=45.85 E-value=1.8e+02 Score=25.22 Aligned_cols=33 Identities=18% Similarity=-0.027 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 182 ERKQAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 182 ~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
..++..+..|..++..+++++..+++++.+++.
T Consensus 66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~ 98 (302)
T PF10186_consen 66 EELRERLERLRERIERLRKRIEQKRERLEELRE 98 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 77
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.95 E-value=76 Score=27.91 Aligned_cols=35 Identities=9% Similarity=-0.039 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 184 KQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 184 Kkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
-+..+.+|+.+..+|++++..++.+++.|..+++.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446778888888888888888888887777654
No 78
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=44.81 E-value=56 Score=24.09 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027587 194 LAVRLEEENEQLLKEK 209 (221)
Q Consensus 194 ~v~~L~~EN~~L~~~~ 209 (221)
++..+..|+..|..++
T Consensus 29 q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 29 QEKTWREERAQLLEKN 44 (65)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 79
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.70 E-value=39 Score=33.57 Aligned_cols=9 Identities=56% Similarity=0.781 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 027587 197 RLEEENEQL 205 (221)
Q Consensus 197 ~L~~EN~~L 205 (221)
.|++||++|
T Consensus 84 ~l~~eN~~L 92 (472)
T TIGR03752 84 ALKAENERL 92 (472)
T ss_pred HHHHHHHHH
Confidence 333333333
No 80
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=44.19 E-value=7.5 Score=35.23 Aligned_cols=30 Identities=33% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+.+|...|..|..||++|+++++.|..+|+
T Consensus 131 I~dLrrlVe~L~aeNErLr~EnkqL~ae~a 160 (243)
T PF08961_consen 131 IADLRRLVEFLLAENERLRRENKQLKAENA 160 (243)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666554
No 81
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=43.95 E-value=48 Score=29.43 Aligned_cols=12 Identities=42% Similarity=0.506 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 027587 197 RLEEENEQLLKE 208 (221)
Q Consensus 197 ~L~~EN~~L~~~ 208 (221)
.|++||.+|++.
T Consensus 97 ~l~~en~~L~~l 108 (276)
T PRK13922 97 QLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHH
Confidence 444555555443
No 82
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.80 E-value=1.4e+02 Score=25.04 Aligned_cols=33 Identities=18% Similarity=-0.004 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 183 RKQAYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 183 RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
++++-+++|+.++...+.+.+.|++|.+.+..+
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666777777777778888888888877765
No 83
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.62 E-value=52 Score=30.29 Aligned_cols=42 Identities=26% Similarity=0.226 Sum_probs=23.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 169 RMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 169 R~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e 210 (221)
..++..+.-..--.++++-++++..++..|+.||.+|...+.
T Consensus 146 E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 146 ELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455566666666666666666666655443
No 84
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.58 E-value=65 Score=22.65 Aligned_cols=21 Identities=38% Similarity=0.300 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027587 185 QAYQVELESLAVRLEEENEQL 205 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L 205 (221)
+..+..|..+...|+.+...|
T Consensus 30 ~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 30 QKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444555555555555554
No 85
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=42.26 E-value=2e+02 Score=27.07 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=34.1
Q ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVE---LESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 158 ~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~e---LE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
..+....||+.+++.-=.--++-|+.+.+-+.| ||.+-.+|++.-.+|.+++..|+.
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888884434445666777766554 445666666666666666655543
No 86
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.84 E-value=50 Score=33.99 Aligned_cols=29 Identities=24% Similarity=0.085 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+.|+.+++.|+.++.+|+++++.|.++++
T Consensus 432 e~l~~e~~~L~~~~ee~k~eie~L~~~l~ 460 (652)
T COG2433 432 ERLEEENSELKRELEELKREIEKLESELE 460 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555544
No 87
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=41.76 E-value=50 Score=28.57 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=14.7
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH
Q 027587 190 ELESLAVRLE---EENEQLLKEKVIRYV 214 (221)
Q Consensus 190 eLE~~v~~L~---~EN~~L~~~~e~l~~ 214 (221)
+||.++..|- .+|+.+..++..+..
T Consensus 58 ~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l 85 (225)
T PF04340_consen 58 QLEEQLEELIENARENEAIFQRLHRLVL 85 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444 667777777665543
No 88
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=41.61 E-value=55 Score=26.61 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
+.++.++..|+.+..+|..+++.+..
T Consensus 108 ~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 108 EELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46667777788888888877776653
No 89
>PRK11239 hypothetical protein; Provisional
Probab=40.96 E-value=48 Score=29.76 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
..||.+|..|+.|...|+.+++.|..+.
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5699999999999999999999887754
No 90
>smart00338 BRLZ basic region leucin zipper.
Probab=40.82 E-value=1.2e+02 Score=21.09 Aligned_cols=55 Identities=24% Similarity=0.201 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 163 AQQRQRRMIKNRESAARSRERKQ---AYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKk---ay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
..|+.+-.+.-+-|-.+-+..-+ ..+..|+.+...|..++..|..++..|...+.
T Consensus 7 ~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 7 RRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444433333332 34567788888888888888888888877654
No 91
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.60 E-value=1.3e+02 Score=30.13 Aligned_cols=31 Identities=23% Similarity=0.081 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
.++-|+.++.+|++||.+|+..+..|.+.++
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~d 328 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLAD 328 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788999999999888877776553
No 92
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=40.00 E-value=60 Score=25.52 Aligned_cols=27 Identities=26% Similarity=0.091 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
.+.+|+.++.+|+.||.-|++..+-..
T Consensus 79 ei~~L~~el~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 79 QIKELQRLLGKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788888888888888887765544
No 93
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.86 E-value=51 Score=33.91 Aligned_cols=29 Identities=34% Similarity=0.229 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
+..|+.+|+.|+.||..|+..++++..++
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~ei 452 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREI 452 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666665555443
No 94
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=38.38 E-value=33 Score=33.06 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 027587 188 QVELESLAVRL 198 (221)
Q Consensus 188 ~~eLE~~v~~L 198 (221)
.++|-.+|.+|
T Consensus 48 N~~Lk~eVerL 58 (420)
T PF07407_consen 48 NNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHH
Confidence 35555555555
No 95
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=38.31 E-value=2.5e+02 Score=23.85 Aligned_cols=51 Identities=16% Similarity=0.095 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208 (221)
Q Consensus 158 ~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~ 208 (221)
++....++|+.+...+-..|.+.+..=.+...+.|.++..-+.+-.+++.+
T Consensus 34 pI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 34 KAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777777775555555665555444444444433
No 96
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=38.07 E-value=71 Score=31.26 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 183 RKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 183 RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
++.+.+.|++.+-..|+..|.+|..++++|..++..
T Consensus 287 q~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 287 QTLQRARELENRQKKLESTNQELALRIEELKSEAGR 322 (411)
T ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 334556677777888999999999999999988764
No 97
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=37.36 E-value=1.9e+02 Score=22.14 Aligned_cols=52 Identities=25% Similarity=0.215 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
..+|..+.+.+=|++-..|.-+..-..+|+.++..|...-.+|-.++.....
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~a 60 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEA 60 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHH
Confidence 4455555555555554444444444466666666655555555555544433
No 98
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=37.28 E-value=2.9e+02 Score=24.60 Aligned_cols=56 Identities=16% Similarity=0.020 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 161 KAAQQRQRRMIKNRESAARSRERKQA----YQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 161 ~~~~rr~rR~ikNReSA~rSR~RKka----y~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
+...+|.||-...+.++=.-+.+=-. ++...=.++..|++.|.+|....++|+.-|
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888887777776544433222 222233456678888888888888887655
No 99
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=37.12 E-value=79 Score=32.02 Aligned_cols=37 Identities=27% Similarity=0.197 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 180 SRERKQAYQVELE-------SLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 180 SR~RKkay~~eLE-------~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
||.|-|..+.+|= .+|..|+.||..|...+..|+...
T Consensus 36 sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~ 79 (546)
T KOG0977|consen 36 SREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVV 79 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555566555555 478899999999999999988643
No 100
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=36.99 E-value=58 Score=24.07 Aligned_cols=24 Identities=33% Similarity=0.245 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 188 QVELESLAVRLEEENEQLLKEKVI 211 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~ 211 (221)
+.||+.++.-|+.|.++|+.++..
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999887643
No 101
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=36.97 E-value=48 Score=31.35 Aligned_cols=30 Identities=17% Similarity=-0.092 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
-++++..++..|+.+..+|++++++|..++
T Consensus 290 ElDe~~krL~ELrR~vr~L~k~l~~l~~~~ 319 (320)
T TIGR01834 290 ELDEAHQRIQQLRREVKSLKKRLGDLEANP 319 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 356777888899999999999999887654
No 102
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=36.86 E-value=16 Score=27.68 Aligned_cols=11 Identities=36% Similarity=0.582 Sum_probs=9.6
Q ss_pred cccHHHHHhhc
Q 027587 79 MMTLEDFLAKA 89 (221)
Q Consensus 79 eMTLEDFLvkA 89 (221)
=||||+||.|-
T Consensus 56 W~tL~~fL~kh 66 (73)
T smart00243 56 WETLDEYLLKH 66 (73)
T ss_pred HHHHHHHHHhC
Confidence 49999999985
No 103
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=36.56 E-value=1.3e+02 Score=26.71 Aligned_cols=25 Identities=20% Similarity=0.078 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e 210 (221)
....+|.++...|++||.+|+.++.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666655555554
No 104
>PF14645 Chibby: Chibby family
Probab=36.55 E-value=63 Score=26.01 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027587 191 LESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 191 LE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
|..+..+|++||+-|+-+++-|.
T Consensus 76 l~~~n~~L~EENN~Lklk~elLl 98 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLL 98 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455678888888888877665
No 105
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=36.09 E-value=1.7e+02 Score=28.36 Aligned_cols=37 Identities=22% Similarity=0.072 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 181 RERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 181 R~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
=.|-|...+.||.-+.++++||..|.-++..+..+|.
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECG 158 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 3566777788999999999999999999999988873
No 106
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=35.79 E-value=3.1e+02 Score=24.13 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
|...|+..|..++.+...|.++++.+
T Consensus 71 ~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 71 YNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 107
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=34.94 E-value=21 Score=26.52 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=11.6
Q ss_pred cccHHHHHhhccc
Q 027587 79 MMTLEDFLAKAGA 91 (221)
Q Consensus 79 eMTLEDFLvkAGv 91 (221)
.||.|||+.+|+.
T Consensus 42 ~ls~edF~~~~p~ 54 (71)
T cd08533 42 ALGKERFLELAPD 54 (71)
T ss_pred cCCHHHHHHHcCC
Confidence 6999999999874
No 108
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.86 E-value=2e+02 Score=29.89 Aligned_cols=6 Identities=50% Similarity=0.230 Sum_probs=2.2
Q ss_pred HHHHHH
Q 027587 191 LESLAV 196 (221)
Q Consensus 191 LE~~v~ 196 (221)
||.++.
T Consensus 550 lE~E~~ 555 (697)
T PF09726_consen 550 LESELK 555 (697)
T ss_pred HHHHHH
Confidence 333333
No 109
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=34.56 E-value=1.1e+02 Score=23.53 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027587 190 ELESLAVRLEEENEQLLKEK 209 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~ 209 (221)
-|..+|..|+++|..|..+.
T Consensus 22 LLqmEieELKekn~~L~~e~ 41 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555543
No 110
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.39 E-value=1.5e+02 Score=29.63 Aligned_cols=29 Identities=10% Similarity=0.011 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
+...++|.+++.|+.||.+|+.+++.+..
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34457899999999999999999865443
No 111
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=34.33 E-value=22 Score=26.64 Aligned_cols=13 Identities=54% Similarity=0.598 Sum_probs=11.4
Q ss_pred cccHHHHHhhccc
Q 027587 79 MMTLEDFLAKAGA 91 (221)
Q Consensus 79 eMTLEDFLvkAGv 91 (221)
.||.|||+.+++.
T Consensus 44 ~lt~edF~~~~~~ 56 (75)
T cd08531 44 KMTKEDFLRLTSA 56 (75)
T ss_pred cCCHHHHHHHcCC
Confidence 6999999999854
No 112
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.93 E-value=1.4e+02 Score=22.06 Aligned_cols=26 Identities=23% Similarity=0.086 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
.|+.++..|+.....|.+++..+...
T Consensus 73 ~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 73 KLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 113
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=32.67 E-value=1.1e+02 Score=27.03 Aligned_cols=49 Identities=18% Similarity=0.023 Sum_probs=34.7
Q ss_pred HHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 168 RRMIKNRESAARSRE-RKQAYQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 168 rR~ikNReSA~rSR~-RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
++.-.....|-+..- |-+-.+..|+..+.+...||.+|-+-+.+|.+..
T Consensus 156 ~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 156 RSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444443 4456788899999999999999999999998764
No 114
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=32.62 E-value=66 Score=31.10 Aligned_cols=27 Identities=22% Similarity=0.047 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
..|..+-..|+.||+.|+.+++.|+++
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777776544
No 115
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=32.52 E-value=2.5e+02 Score=22.21 Aligned_cols=19 Identities=32% Similarity=0.093 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027587 197 RLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 197 ~L~~EN~~L~~~~e~l~~~ 215 (221)
+|++|...-++++++|...
T Consensus 80 kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 80 KLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333333355555555543
No 116
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.22 E-value=89 Score=26.94 Aligned_cols=16 Identities=38% Similarity=0.333 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 027587 197 RLEEENEQLLKEKVIR 212 (221)
Q Consensus 197 ~L~~EN~~L~~~~e~l 212 (221)
.|+.+|..|.++++.|
T Consensus 115 ~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 115 SLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 117
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=32.17 E-value=26 Score=25.22 Aligned_cols=13 Identities=46% Similarity=0.751 Sum_probs=11.8
Q ss_pred cccHHHHHhhccc
Q 027587 79 MMTLEDFLAKAGA 91 (221)
Q Consensus 79 eMTLEDFLvkAGv 91 (221)
.||.|||+.+++.
T Consensus 40 ~ls~edF~~~~p~ 52 (66)
T cd08203 40 LLTKEDFLRRAPS 52 (66)
T ss_pred hCCHHHHHHHcCC
Confidence 6999999999975
No 118
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=31.86 E-value=65 Score=24.54 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 027587 198 LEEENEQLLKEKV 210 (221)
Q Consensus 198 L~~EN~~L~~~~e 210 (221)
|.+||.+|++++.
T Consensus 5 i~eEn~~Lk~eiq 17 (76)
T PF07334_consen 5 IQEENARLKEEIQ 17 (76)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 119
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=31.63 E-value=41 Score=23.55 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQL 205 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L 205 (221)
++.|||.+|..|++=|..|
T Consensus 19 rv~eLEeEV~~LrKINrdL 37 (48)
T PF14077_consen 19 RVSELEEEVRTLRKINRDL 37 (48)
T ss_pred eHHHHHHHHHHHHHHhHHH
Confidence 3456666666666555554
No 120
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.44 E-value=2.7e+02 Score=22.24 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027587 188 QVELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e 210 (221)
+.+++.++..|...|.-|-.+++
T Consensus 107 ~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 107 LSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444443
No 121
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=31.36 E-value=1.1e+02 Score=22.94 Aligned_cols=31 Identities=13% Similarity=-0.004 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRYVTNAEES 220 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~~~~~~~~ 220 (221)
+.+.++.+|-+.+++|..+++.|+.-.++|+
T Consensus 39 ~d~~~L~~L~~~a~rm~eRI~tLE~ILd~e~ 69 (75)
T TIGR02976 39 DDQALLQELYAKADRLEERIDTLERILDAEH 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445556666667777777777776665553
No 122
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=31.10 E-value=74 Score=29.96 Aligned_cols=28 Identities=36% Similarity=0.210 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
..++.|..|+..|++||..|+.+...|.
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666666665554
No 123
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=30.77 E-value=84 Score=28.76 Aligned_cols=24 Identities=29% Similarity=0.123 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e 210 (221)
-+..+..++..|++||.+|+..+-
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666788899999999998763
No 124
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=30.41 E-value=1.4e+02 Score=22.83 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
-+..|-.+|...++||..|..+.+-|+
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677777776666655
No 125
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=30.34 E-value=1.7e+02 Score=23.40 Aligned_cols=32 Identities=22% Similarity=0.026 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+-+--+|.++.-|.-.|.+|-++++.|+.+..
T Consensus 40 ~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 40 QALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888999999999999999987765
No 126
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=30.10 E-value=29 Score=25.23 Aligned_cols=13 Identities=46% Similarity=0.601 Sum_probs=11.7
Q ss_pred cccHHHHHhhccc
Q 027587 79 MMTLEDFLAKAGA 91 (221)
Q Consensus 79 eMTLEDFLvkAGv 91 (221)
.||.|||+.+++.
T Consensus 42 ~ms~edF~~~~p~ 54 (68)
T cd08757 42 SMTEEEFREAAGS 54 (68)
T ss_pred cCCHHHHHHHcCC
Confidence 6999999999875
No 127
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=29.88 E-value=1.2e+02 Score=24.92 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
|..|..++..|+.+...+..++..+
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 128
>PRK11637 AmiB activator; Provisional
Probab=29.78 E-value=3.8e+02 Score=25.37 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 027587 179 RSRERKQAYQVELESL 194 (221)
Q Consensus 179 rSR~RKkay~~eLE~~ 194 (221)
..+..++.++..|+.+
T Consensus 212 ~~k~e~~~~l~~L~~~ 227 (428)
T PRK11637 212 QARNERKKTLTGLESS 227 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555555543
No 129
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.60 E-value=3.5e+02 Score=27.57 Aligned_cols=50 Identities=24% Similarity=0.211 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
.|....+.+...........-+..+..|+..+...++++..|+.+.+++.
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~ 198 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555566666555555555555555544443
No 130
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=29.37 E-value=1.2e+02 Score=23.80 Aligned_cols=25 Identities=8% Similarity=-0.150 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.++.++.+|+.++.+|+.+++-|..
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKK 99 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667777777777766665543
No 131
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.07 E-value=91 Score=31.08 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENE 203 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~ 203 (221)
.+||.++..|+.|.+
T Consensus 79 sELEKqLaaLrqElq 93 (475)
T PRK13729 79 AQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555544433
No 132
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=28.89 E-value=2.8e+02 Score=23.50 Aligned_cols=22 Identities=41% Similarity=0.367 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027587 190 ELESLAVRLEEENEQLLKEKVI 211 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~ 211 (221)
+|..+|..|+.+|..|...+..
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3445666667777666644443
No 133
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=28.13 E-value=2e+02 Score=20.70 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 027587 200 EENEQLLKEKVIRYV 214 (221)
Q Consensus 200 ~EN~~L~~~~e~l~~ 214 (221)
.+..+|++++..|..
T Consensus 32 ~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 32 RQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 134
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=27.87 E-value=94 Score=28.32 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 027587 182 ERKQAYQ-VELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 182 ~RKkay~-~eLE~~v~~L~~EN~~L~~~~e 210 (221)
+++-+.+ .+|+.....|+.||++|++.+.
T Consensus 79 r~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 79 RQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 135
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=27.64 E-value=1.5e+02 Score=24.28 Aligned_cols=27 Identities=22% Similarity=0.094 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
+.||.+|..|+..-..|..++++|++.
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555443
No 136
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=27.28 E-value=79 Score=30.06 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEK 209 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~ 209 (221)
..|.++-.+|++||.+|+.++
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l 80 (337)
T PRK14872 60 LVLETENFLLKERIALLEERL 80 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555554433
No 137
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.16 E-value=4.3e+02 Score=23.18 Aligned_cols=25 Identities=32% Similarity=0.215 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
..|+.++..|+..|.+|.+.+..++
T Consensus 59 ~~l~~e~e~L~~~~~~l~~~v~~q~ 83 (251)
T PF11932_consen 59 RQLEREIENLEVYNEQLERQVASQE 83 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 138
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=27.05 E-value=1.5e+02 Score=22.35 Aligned_cols=29 Identities=17% Similarity=0.006 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 027587 192 ESLAVRLEEENEQLLKEKVIRYVTNAEES 220 (221)
Q Consensus 192 E~~v~~L~~EN~~L~~~~e~l~~~~~~~~ 220 (221)
+.++.+|-+.+++|..+++.|+.-.++|+
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ILdae~ 69 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLERILDAEH 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34555666666777777777776666554
No 139
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.65 E-value=2.4e+02 Score=23.56 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhh
Q 027587 184 KQAYQVELESLAVRLEE---ENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 184 Kkay~~eLE~~v~~L~~---EN~~L~~~~e~l~~~~~ 217 (221)
.+..+.+...++..|+. .|+.|+.+++.|+..+.
T Consensus 32 ~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 32 LKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33444444455555555 56666666666665554
No 140
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=26.60 E-value=4.4e+02 Score=23.58 Aligned_cols=33 Identities=24% Similarity=0.123 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
..-+..+..++..|+.++..+.+++..+.....
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 166 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQ 166 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666777777777777777766665443
No 141
>PRK10963 hypothetical protein; Provisional
Probab=26.43 E-value=99 Score=27.03 Aligned_cols=27 Identities=22% Similarity=0.028 Sum_probs=18.2
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 027587 189 VELESLAVRLE---EENEQLLKEKVIRYVT 215 (221)
Q Consensus 189 ~eLE~~v~~L~---~EN~~L~~~~e~l~~~ 215 (221)
..||.++..|- .+|+.+-.++..+...
T Consensus 54 ~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~ 83 (223)
T PRK10963 54 HVLEEEMTLLMEQAIANEDLFYRLLPLQSR 83 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665554 7888888887776643
No 142
>PRK04325 hypothetical protein; Provisional
Probab=26.40 E-value=2.1e+02 Score=21.17 Aligned_cols=12 Identities=33% Similarity=0.102 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q 027587 188 QVELESLAVRLE 199 (221)
Q Consensus 188 ~~eLE~~v~~L~ 199 (221)
+.+||.++..++
T Consensus 11 i~~LE~klAfQE 22 (74)
T PRK04325 11 ITELEIQLAFQE 22 (74)
T ss_pred HHHHHHHHHHHH
Confidence 666666655444
No 143
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.17 E-value=3.4e+02 Score=21.59 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=19.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Q 027587 172 KNRESAARSRERKQAYQVELE--SLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 172 kNReSA~rSR~RKkay~~eLE--~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
.||.+++..++-...|-..|. .++..|-++...|..++.+...+
T Consensus 57 QNRq~~~dr~ra~~D~~inl~ae~ei~~l~~~l~~l~~~~~~~~~~ 102 (108)
T PF06210_consen 57 QNRQAARDRLRAELDYQINLKAEQEIERLHRKLDALREKLGELLER 102 (108)
T ss_pred hhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 355555443333444433332 33444555555555555444433
No 144
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=25.94 E-value=2.2e+02 Score=19.33 Aligned_cols=45 Identities=31% Similarity=0.386 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 164 QQRQRRMIKNRESAARSRERK---QAYQVELESLAVRLEEENEQLLKE 208 (221)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RK---kay~~eLE~~v~~L~~EN~~L~~~ 208 (221)
.||.+=-+.-+-|-.+.+.+. ...+..|+.+...|..++..|.++
T Consensus 7 ~rR~rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 7 ERRERNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344344444444444444443 356778888888888888888764
No 145
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.91 E-value=1.7e+02 Score=22.58 Aligned_cols=7 Identities=43% Similarity=0.601 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027587 201 ENEQLLK 207 (221)
Q Consensus 201 EN~~L~~ 207 (221)
+|.+|+.
T Consensus 54 en~qLk~ 60 (79)
T PRK15422 54 ENNHLKE 60 (79)
T ss_pred HHHHHHH
Confidence 3333333
No 146
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=25.65 E-value=1.3e+02 Score=24.78 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
+.++-|..++..|++.|..|+++...|+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888888999999999888887764
No 147
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=25.63 E-value=38 Score=25.43 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=12.0
Q ss_pred cccHHHHHhhcccc
Q 027587 79 MMTLEDFLAKAGAV 92 (221)
Q Consensus 79 eMTLEDFLvkAGvv 92 (221)
.||.|||+.+|+..
T Consensus 44 ~LskedF~~~ap~~ 57 (75)
T cd08540 44 KMTKDDFQRLTPSY 57 (75)
T ss_pred hCCHHHHHHHcCCC
Confidence 69999999998643
No 148
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=25.62 E-value=37 Score=25.46 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=23.2
Q ss_pred CCCCcHHHHHHHHHhCcccc-ch-hhhh------cc-cccHHHHHhhccc
Q 027587 51 GAMKSVDDVWREIVSGEKKE-MK-EEAI------DE-MMTLEDFLAKAGA 91 (221)
Q Consensus 51 lskKTVDEVWrdIq~~~~~~-~~-~~~~------~~-eMTLEDFLvkAGv 91 (221)
..-=|.+.|+.=++-..... -. +... .. .||.|||+.+++.
T Consensus 10 P~~Ws~~~V~~WL~w~~~ef~L~~~~~~F~mnG~~LC~ls~edF~~r~p~ 59 (76)
T cd08532 10 PYQWSPANVQKWLLWTEHQYRLPPPPRCFELNGKDLCALSEEDFRRRAPQ 59 (76)
T ss_pred hhhcCHHHHHHHHHHHHHHhCCCCchhcCCCCHHHHHcCCHHHHHHHcCC
Confidence 34457788877666432110 00 1110 11 6999999999864
No 149
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=25.47 E-value=1.6e+02 Score=30.35 Aligned_cols=30 Identities=33% Similarity=0.204 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
.+|+.+|++|+.++.+|.++++.+..+...
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~ 111 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSR 111 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777777766665543
No 150
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=25.37 E-value=1.6e+02 Score=20.55 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
+++.+..|.+|..+.++...|.++-+.|-.+.
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR~~Lv~qH 42 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKRQRLVDQH 42 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 45667888999999999888888877776543
No 151
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=25.11 E-value=1.2e+02 Score=21.72 Aligned_cols=19 Identities=32% Similarity=0.235 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027587 191 LESLAVRLEEENEQLLKEK 209 (221)
Q Consensus 191 LE~~v~~L~~EN~~L~~~~ 209 (221)
|..++..|+.+|.+|+.-+
T Consensus 38 l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 38 LIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455666666665544
No 152
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=24.97 E-value=1.2e+02 Score=31.87 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 174 RESAARSRERKQAYQVELESLAVRLE 199 (221)
Q Consensus 174 ReSA~rSR~RKkay~~eLE~~v~~L~ 199 (221)
=+=|+.|...||+|++||.-++.-|.
T Consensus 419 sq~~kl~k~q~k~y~de~dyr~kl~~ 444 (763)
T TIGR00993 419 AQMAKLSKEQRKAYLEEYDYRVKLLQ 444 (763)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999998776443
No 153
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.92 E-value=1.3e+02 Score=24.81 Aligned_cols=36 Identities=22% Similarity=0.083 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 180 SRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 180 SR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
+-.++.--.++|..++..|+.|+..|..+++.|+..
T Consensus 103 ~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 103 ASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444455688889999999999999999998863
No 154
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=24.75 E-value=3.6e+02 Score=24.07 Aligned_cols=49 Identities=20% Similarity=0.093 Sum_probs=33.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
++..++..--|-+.++|....+..++|+.++..|+.+.+.|+-++..++
T Consensus 95 qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 95 QKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred hhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444556667777777788888888888887777777766554
No 155
>PF15294 Leu_zip: Leucine zipper
Probab=24.71 E-value=1.1e+02 Score=28.51 Aligned_cols=33 Identities=18% Similarity=0.034 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 182 ERKQAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 182 ~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.+=+..+..||.+....-+|...|..++.+|+.
T Consensus 142 ~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 142 EKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566778888888888888999998888876
No 156
>PRK00736 hypothetical protein; Provisional
Probab=24.70 E-value=2.2e+02 Score=20.67 Aligned_cols=13 Identities=31% Similarity=0.166 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLE 199 (221)
Q Consensus 187 y~~eLE~~v~~L~ 199 (221)
++.+||.++..++
T Consensus 6 Ri~~LE~klafqe 18 (68)
T PRK00736 6 RLTELEIRVAEQE 18 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3666666655443
No 157
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.67 E-value=2.2e+02 Score=20.92 Aligned_cols=11 Identities=36% Similarity=0.111 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 027587 187 YQVELESLAVR 197 (221)
Q Consensus 187 y~~eLE~~v~~ 197 (221)
++.+||.++..
T Consensus 9 Ri~~LE~~laf 19 (72)
T PRK02793 9 RLAELESRLAF 19 (72)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 158
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=24.56 E-value=1.8e+02 Score=26.28 Aligned_cols=32 Identities=19% Similarity=0.066 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 027587 182 ERKQAYQVELESL-------AVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 182 ~RKkay~~eLE~~-------v~~L~~EN~~L~~~~e~l~ 213 (221)
.|+.+|+..|+.+ +++|+.+|..|++++++|.
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888854 5677888888888887766
No 159
>PRK00295 hypothetical protein; Provisional
Probab=24.43 E-value=2.4e+02 Score=20.46 Aligned_cols=12 Identities=33% Similarity=0.210 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 027587 188 QVELESLAVRLE 199 (221)
Q Consensus 188 ~~eLE~~v~~L~ 199 (221)
+.+||.++..++
T Consensus 7 i~~LE~kla~qE 18 (68)
T PRK00295 7 VTELESRQAFQD 18 (68)
T ss_pred HHHHHHHHHHHH
Confidence 556665554333
No 160
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.14 E-value=2e+02 Score=22.35 Aligned_cols=15 Identities=53% Similarity=0.709 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 027587 195 AVRLEEENEQLLKEK 209 (221)
Q Consensus 195 v~~L~~EN~~L~~~~ 209 (221)
...|.+||+.|+.+.
T Consensus 32 ~~kL~~en~qlk~Ek 46 (87)
T PF10883_consen 32 NAKLQKENEQLKTEK 46 (87)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555554443
No 161
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=24.12 E-value=79 Score=31.58 Aligned_cols=28 Identities=11% Similarity=-0.056 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.+++|++++++|+++...|.+++...+.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 5667777777777777666666655443
No 162
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=24.11 E-value=2.1e+02 Score=22.86 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 027587 186 AYQVELESLAVRLEEENE-QLLKEKVIRYVT 215 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~-~L~~~~e~l~~~ 215 (221)
+||.+|...|..|+.+.+ -|-.+.++-...
T Consensus 54 t~L~~LR~~lt~lQddIN~fLTeRMe~dK~~ 84 (103)
T PF08738_consen 54 TYLSELRAQLTTLQDDINEFLTERMEEDKAR 84 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999988888886655 466666554433
No 163
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=24.10 E-value=1.6e+02 Score=26.45 Aligned_cols=32 Identities=19% Similarity=-0.004 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 182 ERKQAYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 182 ~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
..|+.|+++||.++..|-.--..|-++-.+|-
T Consensus 25 ~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa 56 (234)
T cd07665 25 EEKLQEVECEEQRLRKLHAVVETLVNHRKELA 56 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999988887777766655543
No 164
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.07 E-value=4.3e+02 Score=24.29 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=32.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 027587 169 RMIKNRESAARSRERKQAYQVELESLAVRLE----EENEQLLKEKVIRYV 214 (221)
Q Consensus 169 R~ikNReSA~rSR~RKkay~~eLE~~v~~L~----~EN~~L~~~~e~l~~ 214 (221)
++.+--.|.+....+.+..+..|+.++...+ .-+..|..+++.|+-
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~ 103 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRM 103 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 4444445677788888888899999888888 555666666666553
No 165
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=23.89 E-value=5.2e+02 Score=22.97 Aligned_cols=35 Identities=11% Similarity=-0.059 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 183 RKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 183 RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+-+.-+..|+.++..|+..|..|.+++.++.....
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 33444566666677777777777777766655443
No 166
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=23.55 E-value=1.8e+02 Score=23.82 Aligned_cols=23 Identities=26% Similarity=0.073 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVI 211 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~ 211 (221)
.+|=.+-..|+-||..|++++.+
T Consensus 32 ~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 32 GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHhhHHHHhhHHHHHHHhCC
Confidence 44444445556666666666544
No 167
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=23.36 E-value=1.2e+02 Score=30.74 Aligned_cols=32 Identities=28% Similarity=0.199 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYVTNAEE 219 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~~ 219 (221)
+.-||.++..|+.||.+|..++..++...+.|
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34556667777888888888877777654443
No 168
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.32 E-value=3.5e+02 Score=23.74 Aligned_cols=39 Identities=18% Similarity=0.046 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 179 RSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 179 rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
..+..+-+-+-++|.++.+.+.+.+.|+.++..|....+
T Consensus 155 l~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 155 LEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334556677778999999999999999998888876543
No 169
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=23.27 E-value=44 Score=25.88 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=24.4
Q ss_pred cCCCCCcHHHHHHHHHhCccc----cc--hhhhhc---c-cccHHHHHhhccc
Q 027587 49 SAGAMKSVDDVWREIVSGEKK----EM--KEEAID---E-MMTLEDFLAKAGA 91 (221)
Q Consensus 49 ~~lskKTVDEVWrdIq~~~~~----~~--~~~~~~---~-eMTLEDFLvkAGv 91 (221)
....-=|-+.||.=++-..+. .. ..-... . .||.|||+.++..
T Consensus 17 ~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~Ls~edF~~r~p~ 69 (89)
T cd08534 17 YDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDWNITGRELCSLTQEEFFQRVPK 69 (89)
T ss_pred CChHHcCHHHHHHHHHHHHHHcCCCCCChhhcCCCHHHHhcCCHHHHHHHcCC
Confidence 345556778887766643111 00 000001 1 6999999999873
No 170
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=23.19 E-value=1.6e+02 Score=27.23 Aligned_cols=29 Identities=28% Similarity=0.004 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
.+..||.++.+++.+|.-...++..+..+
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 34566666666666666666666655544
No 171
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=23.14 E-value=3.6e+02 Score=23.74 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhh
Q 027587 180 SRERKQAYQVELESLAVRLEEE--------NEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 180 SR~RKkay~~eLE~~v~~L~~E--------N~~L~~~~e~l~~~~~~ 218 (221)
-..|=+.|+..|+..+.+|+.+ ..++.++++.|..-.+.
T Consensus 25 ~~~rl~~yv~~L~~~l~~L~~~~~~~s~e~l~eY~~ri~~Lk~l~~~ 71 (251)
T PF09753_consen 25 NQWRLEKYVETLREMLEELEESLSKPSKEVLNEYSERIDFLKGLIEA 71 (251)
T ss_pred chHhHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4667788999999999999977 33456777766654433
No 172
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=23.09 E-value=3.5e+02 Score=26.90 Aligned_cols=49 Identities=24% Similarity=0.200 Sum_probs=33.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhh
Q 027587 168 RRMIKNRESAARSRERKQAYQVELES------------LAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 168 rR~ikNReSA~rSR~RKkay~~eLE~------------~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
-+|-+--+-|-+-+..-++|++.||. +.+.|+.|+.+|..+++++..+.
T Consensus 146 ~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~ 206 (447)
T KOG2751|consen 146 NKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEE 206 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667778888888888884 34566677777877777776554
No 173
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.97 E-value=3.7e+02 Score=23.10 Aligned_cols=44 Identities=32% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 175 ESAARSRERKQAY----QVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 175 eSA~rSR~RKkay----~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
+|+-.--.||.-. ..+|+.++..|+.++..|..++..+..+++.
T Consensus 105 ~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 105 ESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 174
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=22.96 E-value=1.6e+02 Score=25.99 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027587 183 RKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAEE 219 (221)
Q Consensus 183 RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~~ 219 (221)
-|++.+......|..|++|+..-++++.+....+-.+
T Consensus 71 ~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H~qRV~a 107 (193)
T PF12925_consen 71 FKKEMTQRFQKTVQALEQEAAAERQQLVETHQQRVQA 107 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888888999999999999999998887665443
No 175
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.83 E-value=3.5e+02 Score=24.32 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
.|..+.+.+..|-.+|..+.+.|+.+
T Consensus 183 al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 183 ALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33333333444444444444444443
No 176
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.52 E-value=4.2e+02 Score=22.95 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 180 SRERKQAYQVELESLAVRLEEENEQLLKE 208 (221)
Q Consensus 180 SR~RKkay~~eLE~~v~~L~~EN~~L~~~ 208 (221)
...++-..+.+||.++..|+++...+..+
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ 153 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEK 153 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667777777666654444433
No 177
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.49 E-value=2.9e+02 Score=19.85 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
-++.|...|..|...-.+|...+..++.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666665555543
No 178
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.48 E-value=5.7e+02 Score=25.23 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 179 RSRERKQAYQVELESLAVRLEEENEQLLKEKVI 211 (221)
Q Consensus 179 rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~ 211 (221)
++....+.....||.++..|+.++..+..++.+
T Consensus 52 ~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~ 84 (420)
T COG4942 52 KKIREQQDQRAKLEKQLKSLETEIASLEAQLIE 84 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455666666666555555555443
No 179
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.41 E-value=4.7e+02 Score=21.99 Aligned_cols=54 Identities=26% Similarity=0.100 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 164 QQRQRRMIKNRESAARSRERKQAYQVELE------------SLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE------------~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
.+.+-..|.+.=-++-...|.+-|....| .++..|..|...|+.++.+++.+..
T Consensus 48 QQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 48 QQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555444443 4688999999999999987776443
No 180
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.13 E-value=2.5e+02 Score=21.42 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027587 190 ELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
.|+.++..|..+-..|+.++.++
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 181
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=22.07 E-value=48 Score=24.34 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=10.8
Q ss_pred cccHHHHHhhcc
Q 027587 79 MMTLEDFLAKAG 90 (221)
Q Consensus 79 eMTLEDFLvkAG 90 (221)
.||.|||+.|++
T Consensus 41 ~ls~edF~~r~p 52 (68)
T cd08535 41 LLTKEDFRYRSP 52 (68)
T ss_pred cCCHHHHhhhCC
Confidence 699999999875
No 182
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=21.98 E-value=3.7e+02 Score=25.43 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Q 027587 163 AQQRQRRMIKNRESAARSRERKQAYQVELES--------------LAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~--------------~v~~L~~EN~~L~~~~e~l~~ 214 (221)
+..++..|..+=+--.+-|.-||-.++.||. ++..|+.||..|...++.|..
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek 81 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 4555555665555566666677777777764 334566777776666665553
No 183
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.84 E-value=3.7e+02 Score=21.27 Aligned_cols=12 Identities=25% Similarity=0.213 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 027587 198 LEEENEQLLKEK 209 (221)
Q Consensus 198 L~~EN~~L~~~~ 209 (221)
-+++.++|.+.+
T Consensus 88 ~~k~i~~le~~I 99 (100)
T PF04568_consen 88 HRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 444444444443
No 184
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=21.79 E-value=3.2e+02 Score=20.83 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 180 SRERKQAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 180 SR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
--.|-..|+..|..++....+.|..|..+...++.
T Consensus 20 EI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 20 EIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677889999999999999999999988877765
No 185
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=21.67 E-value=50 Score=24.87 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=24.5
Q ss_pred CCCCCcHHHHHHHHHhCcccc-chh--h---hhc---c-cccHHHHHhhcc
Q 027587 50 AGAMKSVDDVWREIVSGEKKE-MKE--E---AID---E-MMTLEDFLAKAG 90 (221)
Q Consensus 50 ~lskKTVDEVWrdIq~~~~~~-~~~--~---~~~---~-eMTLEDFLvkAG 90 (221)
...-=|.++|+.=|+-..... ... - ... . .||.|||+.+++
T Consensus 16 dP~~Wt~~~V~~Wl~w~~~ef~L~~~~~~~f~m~G~~Lc~ls~edF~~~~p 66 (82)
T smart00251 16 DPQLWTEDHVLEWLEWAVKEFSLSPIDFSKFDMSGKELCSMSKEEFLERAP 66 (82)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHcCCHHHHHHHcC
Confidence 445568888988776542110 000 0 001 1 699999999997
No 186
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=21.64 E-value=2e+02 Score=21.87 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.+|-.+-.+|++|...|+.+++.+..
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555556666666666555555443
No 187
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=21.58 E-value=2.2e+02 Score=22.12 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027587 202 NEQLLKE 208 (221)
Q Consensus 202 N~~L~~~ 208 (221)
|.+.+++
T Consensus 55 n~~vrqk 61 (87)
T PF10883_consen 55 NAKVRQK 61 (87)
T ss_pred HHHHHHH
Confidence 3333333
No 188
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.53 E-value=1.2e+02 Score=26.97 Aligned_cols=26 Identities=23% Similarity=0.101 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.+||.+|+.|+.|-.+|+.++..+..
T Consensus 188 ~dlearv~aLe~eva~L~~rld~ll~ 213 (215)
T COG3132 188 SDLEARVEALEQEVAELRARLDSLLG 213 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35889999999999999998887753
No 189
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.45 E-value=5e+02 Score=23.48 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 176 SAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 176 SA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
.+||=|=| ....|||.++..+..++..|+.+++.|+..|-
T Consensus 85 tsQRDRFR--~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 85 TSQRDRFR--QRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554444 45589999999999999999999999998774
No 190
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=21.39 E-value=49 Score=24.11 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=10.9
Q ss_pred cccHHHHHhhccc
Q 027587 79 MMTLEDFLAKAGA 91 (221)
Q Consensus 79 eMTLEDFLvkAGv 91 (221)
.||.|||+.|+..
T Consensus 40 ~ls~edF~~r~P~ 52 (66)
T cd08536 40 LMSLEGFLYRVPV 52 (66)
T ss_pred cCCHHHHHhhcCC
Confidence 6999999998743
No 191
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.17 E-value=3e+02 Score=19.74 Aligned_cols=22 Identities=23% Similarity=0.006 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027587 185 QAYQVELESLAVRLEEENEQLL 206 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~ 206 (221)
+..+..|+.+...|+.|...|.
T Consensus 37 ~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 37 QLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3334455555555555555443
No 192
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.17 E-value=4.2e+02 Score=24.54 Aligned_cols=27 Identities=33% Similarity=0.275 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
.+|..++..+.+||..|.+++++|+.+
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e 164 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAE 164 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555544443
No 193
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.14 E-value=2e+02 Score=21.79 Aligned_cols=31 Identities=19% Similarity=0.012 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
-.++|-.++..|+.+...|..++..+..+..
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666655443
No 194
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=21.10 E-value=2e+02 Score=25.69 Aligned_cols=32 Identities=22% Similarity=0.137 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 182 ERKQAYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 182 ~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
..|+.|+++||.++..|-.--..|-++-.+|-
T Consensus 25 ~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela 56 (234)
T cd07664 25 EEKQQQFENLDQQLRKLHASVESLVCHRKELS 56 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999988877777766655443
No 195
>PRK04406 hypothetical protein; Provisional
Probab=21.09 E-value=2.8e+02 Score=20.63 Aligned_cols=14 Identities=0% Similarity=-0.247 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 027587 200 EENEQLLKEKVIRY 213 (221)
Q Consensus 200 ~EN~~L~~~~e~l~ 213 (221)
.+...|.+++..|.
T Consensus 39 ~~I~~L~~ql~~L~ 52 (75)
T PRK04406 39 LLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555443
No 196
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=21.00 E-value=52 Score=25.00 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=12.1
Q ss_pred cccHHHHHhhcccc
Q 027587 79 MMTLEDFLAKAGAV 92 (221)
Q Consensus 79 eMTLEDFLvkAGvv 92 (221)
.||.|||+-+||..
T Consensus 47 ~ms~eeF~~~~p~~ 60 (78)
T cd08538 47 SMTQEEFIEAAGIC 60 (78)
T ss_pred cCCHHHHHHHcccc
Confidence 69999999999743
No 197
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=20.98 E-value=1.1e+02 Score=29.97 Aligned_cols=23 Identities=39% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027587 180 SRERKQAYQVELESLAVRLEEEN 202 (221)
Q Consensus 180 SR~RKkay~~eLE~~v~~L~~EN 202 (221)
.|.-|++.+.+||.++..|+.|.
T Consensus 396 ~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 396 EREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667777899999999999875
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.91 E-value=1.6e+02 Score=26.40 Aligned_cols=25 Identities=8% Similarity=0.001 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
.+|..++..|+.|..+|+-++|++.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~ 81 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQ 81 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3455555555555555555554443
No 199
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=20.89 E-value=4e+02 Score=27.32 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=20.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 169 RMIKNRESAARSRERKQAYQVELESLAVRLEEEN 202 (221)
Q Consensus 169 R~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN 202 (221)
-..+|.+.-.+--..+++.+.+||.++..++++.
T Consensus 105 aqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 105 AQVENNEQLSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555443333467778888888777666443
No 200
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=20.76 E-value=5.6e+02 Score=22.25 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQ 204 (221)
Q Consensus 158 ~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~ 204 (221)
+.....++|+.++.+.-+.|.+.+..=+..+.+.|.++..-+.+-..
T Consensus 77 pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~ 123 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHS 123 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888888887777776666666666554444443
No 201
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=20.73 E-value=4.4e+02 Score=21.01 Aligned_cols=26 Identities=23% Similarity=0.074 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 191 LESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 191 LE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
.+.+-..|+.+...+.+++.+|..+|
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN 121 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQN 121 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555554
No 202
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=20.66 E-value=4.4e+02 Score=21.02 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=35.5
Q ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLK 207 (221)
Q Consensus 158 ~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~ 207 (221)
|....-++|+.+..++-+.|...+..-++.+.+.+.++...+.+-.++..
T Consensus 28 pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~ 77 (156)
T PRK05759 28 PIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIE 77 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888888888888777777877777766655554433
No 203
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=20.59 E-value=2.5e+02 Score=20.88 Aligned_cols=28 Identities=29% Similarity=0.144 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
.+..++..++.++.+|..+.+.|..+.+
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~ 66 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIA 66 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777766544
No 204
>PRK02119 hypothetical protein; Provisional
Probab=20.58 E-value=2.9e+02 Score=20.33 Aligned_cols=12 Identities=25% Similarity=-0.000 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 027587 186 AYQVELESLAVR 197 (221)
Q Consensus 186 ay~~eLE~~v~~ 197 (221)
+.+.+||.++..
T Consensus 9 ~Ri~~LE~rla~ 20 (73)
T PRK02119 9 NRIAELEMKIAF 20 (73)
T ss_pred HHHHHHHHHHHH
Confidence 345555555443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.45 E-value=5.6e+02 Score=22.99 Aligned_cols=30 Identities=10% Similarity=-0.181 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 184 KQAYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 184 Kkay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
=+..++.|..+|.+|+-.++++..+++.+.
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 366677787777777766666666655554
No 206
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=20.34 E-value=2.8e+02 Score=22.99 Aligned_cols=32 Identities=16% Similarity=-0.009 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
..+..|+.++..-..|...|++++.++...|.
T Consensus 94 ~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~ 125 (131)
T PF04859_consen 94 IVVKKLEAELRAKDSEIDRLREKLDELNRANK 125 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666677777777777666554
No 207
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.27 E-value=3.6e+02 Score=19.77 Aligned_cols=21 Identities=38% Similarity=0.241 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027587 193 SLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 193 ~~v~~L~~EN~~L~~~~e~l~ 213 (221)
.....|+.||+.|+++++..+
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344566666666666655543
No 208
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=20.09 E-value=4.1e+02 Score=24.84 Aligned_cols=55 Identities=18% Similarity=0.104 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 161 KAAQQRQRRMIKNRESAAR-----SRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 161 ~~~~rr~rR~ikNReSA~r-----SR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+-+.||.|+.+.-+-|-+| ||..+|- ..|-.+...|..+..+|++++.++.++..
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEdkv--~~lk~~n~~L~~~l~~l~~~v~e~k~~V~ 265 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLEDKV--KTLKIYNRDLASELSKLKEQVAELKQKVM 265 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhh--hhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677776655555444 5555542 33334444444444444455544444443
No 209
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=20.08 E-value=55 Score=25.39 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=24.5
Q ss_pred cCCCCCcHHHHHHHHHhCcc----ccchhh--hhc---c-cccHHHHHhhccc
Q 027587 49 SAGAMKSVDDVWREIVSGEK----KEMKEE--AID---E-MMTLEDFLAKAGA 91 (221)
Q Consensus 49 ~~lskKTVDEVWrdIq~~~~----~~~~~~--~~~---~-eMTLEDFLvkAGv 91 (221)
....-=|.+.||.=++-... .+..-. ... . .||.|||+.++..
T Consensus 17 ~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~~P~ 69 (88)
T cd08542 17 KDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKECFLELAPD 69 (88)
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCCCCcccCCCCHHHHHcCCHHHHHhHcCC
Confidence 45566788898866553311 110000 011 1 6999999999853
No 210
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=20.07 E-value=5.4e+02 Score=21.71 Aligned_cols=48 Identities=8% Similarity=0.159 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQL 205 (221)
Q Consensus 158 ~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L 205 (221)
|+....++|+.++.+.-+.|...+..=+....+.|.++...+.|-..+
T Consensus 55 PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~i 102 (181)
T PRK13454 55 RIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRI 102 (181)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777777777777777776666555554443
No 211
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.06 E-value=2.4e+02 Score=21.11 Aligned_cols=23 Identities=17% Similarity=-0.101 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027587 192 ESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 192 E~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
+.++..|++++...+.-+..+..
T Consensus 58 ~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 58 EEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
Done!