Query 027587
Match_columns 221
No_of_seqs 216 out of 671
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 20:41:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.7 1.7E-16 5.9E-21 111.0 7.4 54 165-218 1-54 (55)
2 2wt7_A Proto-oncogene protein 99.4 6.9E-13 2.4E-17 94.5 8.0 54 164-217 1-54 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.4 2.3E-12 7.7E-17 91.0 7.8 53 165-217 1-53 (61)
4 2dgc_A Protein (GCN4); basic d 99.3 5.2E-12 1.8E-16 90.4 7.1 50 168-217 12-61 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.3 1.4E-11 4.7E-16 87.3 7.8 53 165-217 1-53 (62)
6 1ci6_A Transcription factor AT 99.0 9.7E-10 3.3E-14 78.4 6.6 53 165-217 2-54 (63)
7 1gu4_A CAAT/enhancer binding p 98.8 2.9E-08 9.9E-13 73.9 8.2 58 160-217 10-67 (78)
8 1hjb_A Ccaat/enhancer binding 98.7 5.8E-08 2E-12 73.6 8.2 58 160-217 10-67 (87)
9 1gd2_E Transcription factor PA 98.5 3.7E-07 1.3E-11 66.7 7.3 51 167-217 10-67 (70)
10 3a5t_A Transcription factor MA 98.4 3.7E-08 1.3E-12 77.3 0.5 57 157-213 29-85 (107)
11 2wt7_B Transcription factor MA 97.9 5.5E-05 1.9E-09 57.7 9.2 58 158-215 20-77 (90)
12 2oqq_A Transcription factor HY 97.2 0.00047 1.6E-08 45.8 4.6 33 185-217 2-34 (42)
13 1skn_P DNA-binding domain of S 95.5 0.007 2.4E-07 46.2 2.6 37 157-193 54-90 (92)
14 2c9l_Y EB1, zebra, BZLF1 trans 92.8 0.63 2.2E-05 32.6 7.7 43 170-212 6-48 (63)
15 3m48_A General control protein 91.6 0.21 7.3E-06 31.4 3.7 27 188-214 2-28 (33)
16 2oxj_A Hybrid alpha/beta pepti 91.5 0.26 8.8E-06 31.2 4.0 28 187-214 2-29 (34)
17 1kd8_B GABH BLL, GCN4 acid bas 91.5 0.29 9.8E-06 31.4 4.3 32 187-218 2-33 (36)
18 1kd8_A GABH AIV, GCN4 acid bas 90.3 0.3 1E-05 31.3 3.5 32 187-218 2-33 (36)
19 3s9g_A Protein hexim1; cyclin 89.0 2.4 8.2E-05 32.8 8.4 31 185-215 64-94 (104)
20 1nkp_B MAX protein, MYC proto- 88.9 0.74 2.5E-05 33.2 5.3 34 185-218 46-79 (83)
21 1am9_A Srebp-1A, protein (ster 87.7 0.85 2.9E-05 33.2 5.0 29 185-213 49-77 (82)
22 1gmj_A ATPase inhibitor; coile 87.7 3.6 0.00012 30.7 8.4 66 150-215 13-80 (84)
23 3c3f_A Alpha/beta peptide with 87.5 0.82 2.8E-05 28.9 4.0 28 187-214 2-29 (34)
24 3c3g_A Alpha/beta peptide with 86.5 1.4 4.7E-05 27.7 4.6 27 188-214 2-28 (33)
25 1p9i_A Cortexillin I/GCN4 hybr 86.5 0.91 3.1E-05 27.7 3.7 28 190-217 3-30 (31)
26 2kz5_A Transcription factor NF 85.8 0.069 2.4E-06 40.6 -1.8 30 157-186 58-87 (91)
27 1nlw_A MAD protein, MAX dimeri 85.2 2 7E-05 31.2 5.9 34 184-217 45-78 (80)
28 1fmh_A General control protein 84.8 2.1 7.1E-05 26.4 4.8 29 188-216 3-31 (33)
29 1deb_A APC protein, adenomatou 84.6 1.6 5.6E-05 30.0 4.7 27 188-214 5-31 (54)
30 2yy0_A C-MYC-binding protein; 84.6 1.2 4E-05 30.4 4.0 19 190-208 30-48 (53)
31 2wq1_A General control protein 83.6 2.2 7.6E-05 26.8 4.6 27 188-214 2-28 (33)
32 1uo4_A General control protein 83.5 1.5 5.2E-05 27.7 3.9 28 187-214 2-29 (34)
33 2bni_A General control protein 83.1 1.6 5.6E-05 27.6 3.9 28 187-214 2-29 (34)
34 2hy6_A General control protein 82.9 1.7 5.7E-05 27.5 3.9 29 187-215 2-30 (34)
35 1dip_A Delta-sleep-inducing pe 81.7 1.6 5.4E-05 32.2 4.0 22 186-207 22-43 (78)
36 2oqq_A Transcription factor HY 81.3 3.3 0.00011 27.3 5.0 24 186-209 17-40 (42)
37 2oa5_A Hypothetical protein BQ 78.9 1.1 3.8E-05 35.1 2.5 24 187-210 9-32 (110)
38 2wuj_A Septum site-determining 78.8 2.1 7.3E-05 29.2 3.7 30 186-215 27-56 (57)
39 1nkp_A C-MYC, MYC proto-oncoge 78.7 3.6 0.00012 30.3 5.2 32 185-216 51-82 (88)
40 1go4_E MAD1 (mitotic arrest de 74.2 5.4 0.00018 30.6 5.2 31 187-217 13-43 (100)
41 1hlo_A Protein (transcription 73.6 3 0.0001 29.9 3.4 24 185-208 56-79 (80)
42 1gd2_E Transcription factor PA 72.8 4.8 0.00016 28.9 4.3 23 190-212 47-69 (70)
43 1zme_C Proline utilization tra 72.4 2.7 9.2E-05 28.4 2.9 26 185-210 43-68 (70)
44 3he5_A Synzip1; heterodimeric 69.7 6.2 0.00021 26.1 4.0 23 187-209 4-26 (49)
45 2r2v_A GCN4 leucine zipper; co 69.4 9.7 0.00033 24.0 4.6 27 188-214 3-29 (34)
46 2dfs_A Myosin-5A; myosin-V, in 68.4 16 0.00056 37.7 8.8 30 185-214 1015-1044(1080)
47 3nmd_A CGMP dependent protein 68.3 7.1 0.00024 28.4 4.4 33 182-214 36-68 (72)
48 3hnw_A Uncharacterized protein 67.4 41 0.0014 26.6 9.2 42 176-217 93-134 (138)
49 2yy0_A C-MYC-binding protein; 66.7 11 0.00037 25.5 4.8 26 193-218 19-44 (53)
50 2dgc_A Protein (GCN4); basic d 66.4 20 0.0007 24.8 6.4 55 156-210 4-61 (63)
51 3oja_A Leucine-rich immune mol 65.6 27 0.00093 31.6 8.9 40 179-218 428-467 (487)
52 3mq7_A Bone marrow stromal ant 64.9 23 0.0008 28.0 7.1 33 185-217 70-102 (121)
53 1gu4_A CAAT/enhancer binding p 61.4 33 0.0011 24.9 7.0 66 149-214 3-71 (78)
54 3w03_C DNA repair protein XRCC 61.1 11 0.00036 31.8 4.8 29 188-216 154-182 (184)
55 3ra3_B P2F; coiled coil domain 60.8 7.5 0.00025 23.1 2.7 23 195-217 2-24 (28)
56 3he4_B Synzip5; heterodimeric 59.1 26 0.0009 22.8 5.4 34 185-218 9-42 (46)
57 1nkp_B MAX protein, MYC proto- 57.7 9.7 0.00033 27.2 3.5 25 188-212 56-80 (83)
58 2er8_A Regulatory protein Leu3 56.9 6.1 0.00021 26.8 2.3 22 185-206 48-69 (72)
59 1dip_A Delta-sleep-inducing pe 56.3 14 0.00048 27.1 4.1 32 188-219 17-48 (78)
60 2p22_D Hypothetical 12.0 kDa p 55.0 3.1 0.00011 30.8 0.5 10 1-10 1-10 (79)
61 1zxa_A CGMP-dependent protein 53.3 22 0.00077 25.3 4.8 33 183-215 22-54 (67)
62 2aze_A Transcription factor DP 51.7 43 0.0015 27.5 6.8 21 179-199 19-39 (155)
63 1nkp_A C-MYC, MYC proto-oncoge 51.2 24 0.00082 25.8 4.8 24 190-213 63-86 (88)
64 1ci6_A Transcription factor AT 50.7 57 0.002 22.3 6.9 25 189-213 33-57 (63)
65 2lz1_A Nuclear factor erythroi 49.5 0.38 1.3E-05 36.5 -5.3 28 158-185 59-86 (90)
66 3oja_B Anopheles plasmodium-re 49.2 83 0.0028 28.8 9.2 26 188-213 539-564 (597)
67 2jee_A YIIU; FTSZ, septum, coi 48.9 33 0.0011 25.3 5.2 19 191-209 25-43 (81)
68 3cve_A Homer protein homolog 1 48.9 26 0.00087 25.3 4.5 23 191-213 5-27 (72)
69 3o0z_A RHO-associated protein 47.2 1.1E+02 0.0038 25.3 8.7 51 164-214 68-118 (168)
70 1uii_A Geminin; human, DNA rep 45.2 49 0.0017 24.6 5.7 23 191-213 51-73 (83)
71 4ath_A MITF, microphthalmia-as 43.8 42 0.0014 24.8 5.1 31 186-216 49-79 (83)
72 3a2a_A Voltage-gated hydrogen 43.5 22 0.00074 24.8 3.2 24 189-212 21-44 (58)
73 1nlw_A MAD protein, MAX dimeri 43.4 26 0.00088 25.2 3.9 24 189-212 57-80 (80)
74 2jee_A YIIU; FTSZ, septum, coi 43.2 49 0.0017 24.4 5.4 9 189-197 30-38 (81)
75 3q4f_C DNA repair protein XRCC 42.8 22 0.00074 30.1 3.8 22 188-209 163-184 (186)
76 2zvf_A Alanyl-tRNA synthetase; 42.4 23 0.00079 27.7 3.8 27 190-216 29-55 (171)
77 1a93_B MAX protein, coiled coi 41.9 45 0.0015 20.9 4.2 23 190-212 11-33 (34)
78 4ati_A MITF, microphthalmia-as 41.1 17 0.00058 28.0 2.8 55 161-215 32-113 (118)
79 3nmd_A CGMP dependent protein 41.0 73 0.0025 23.0 5.9 32 185-216 32-63 (72)
80 3oja_B Anopheles plasmodium-re 39.6 1.3E+02 0.0045 27.5 9.0 29 187-215 552-580 (597)
81 3plt_A Sphingolipid long chain 39.4 1E+02 0.0036 26.7 7.7 29 164-192 92-121 (234)
82 2xv5_A Lamin-A/C; structural p 39.2 96 0.0033 22.1 6.3 34 179-212 5-38 (74)
83 1hjb_A Ccaat/enhancer binding 38.8 1.1E+02 0.0039 22.4 8.9 65 150-214 4-71 (87)
84 3w03_C DNA repair protein XRCC 38.8 49 0.0017 27.7 5.4 33 185-217 144-176 (184)
85 2v66_B Nuclear distribution pr 38.1 1.2E+02 0.0042 23.3 7.2 30 188-217 37-66 (111)
86 2ve7_C Kinetochore protein NUF 38.1 34 0.0011 29.5 4.4 37 182-218 144-180 (250)
87 1t2k_D Cyclic-AMP-dependent tr 38.1 89 0.003 20.9 7.1 28 188-215 31-58 (61)
88 3m9b_A Proteasome-associated A 36.9 34 0.0012 30.0 4.3 31 186-216 61-91 (251)
89 3vmx_A Voltage-gated hydrogen 36.4 52 0.0018 22.1 4.2 24 189-212 14-37 (48)
90 1uii_A Geminin; human, DNA rep 35.4 66 0.0022 23.9 5.0 28 185-212 52-79 (83)
91 1wt6_A Myotonin-protein kinase 34.9 1.4E+02 0.0046 22.1 7.6 26 190-215 49-74 (81)
92 3hnw_A Uncharacterized protein 34.5 78 0.0027 25.0 5.7 27 189-215 92-118 (138)
93 3s4r_A Vimentin; alpha-helix, 33.7 44 0.0015 24.7 3.9 23 193-215 23-45 (93)
94 3swy_A Cyclic nucleotide-gated 32.7 77 0.0026 20.9 4.5 9 205-213 35-43 (46)
95 2jws_A GA88; evolution, foldin 32.6 16 0.00054 25.4 1.2 10 52-61 35-44 (56)
96 3s9g_A Protein hexim1; cyclin 32.5 1.7E+02 0.0058 22.5 7.7 28 190-217 62-89 (104)
97 3ghg_A Fibrinogen alpha chain; 32.2 77 0.0026 30.8 6.2 39 177-215 101-139 (562)
98 2wt7_B Transcription factor MA 32.0 75 0.0026 23.7 4.9 29 189-217 58-86 (90)
99 1gk7_A Vimentin; intermediate 32.0 21 0.00073 22.7 1.6 19 193-211 20-38 (39)
100 3a2a_A Voltage-gated hydrogen 32.0 1.1E+02 0.0039 21.1 5.4 25 186-210 25-49 (58)
101 1sv0_A ETS DNA-binding protein 31.2 17 0.00057 26.7 1.2 43 49-91 8-60 (85)
102 3mq9_A Bone marrow stromal ant 31.0 1E+02 0.0036 27.5 6.7 8 56-63 287-294 (471)
103 1r4g_A RNA polymerase alpha su 30.0 41 0.0014 22.9 2.8 16 177-192 14-29 (53)
104 3a7p_A Autophagy protein 16; c 29.4 89 0.003 25.5 5.3 20 189-208 113-132 (152)
105 3viq_B Mating-type switching p 29.3 80 0.0027 23.4 4.6 25 190-214 5-29 (85)
106 2j5u_A MREC protein; bacterial 29.2 55 0.0019 28.0 4.3 24 187-210 37-60 (255)
107 2wvr_A Geminin; DNA replicatio 29.1 75 0.0026 27.2 5.0 27 186-212 122-148 (209)
108 2w6b_A RHO guanine nucleotide 28.5 80 0.0027 21.8 4.1 24 190-213 14-37 (56)
109 2dkx_A SAM pointed domain-cont 28.5 20 0.00068 26.8 1.2 12 79-90 62-73 (96)
110 1x66_A Friend leukemia integra 28.2 19 0.00065 27.0 1.1 46 47-92 20-76 (98)
111 3he4_A Synzip6; heterodimeric 28.2 92 0.0031 21.0 4.3 26 190-215 21-46 (56)
112 3ol1_A Vimentin; structural ge 28.1 1.1E+02 0.0037 23.3 5.4 13 159-171 17-29 (119)
113 3s4r_A Vimentin; alpha-helix, 28.0 1.2E+02 0.004 22.4 5.4 35 182-216 52-86 (93)
114 1hwt_C Protein (heme activator 26.7 37 0.0013 23.1 2.3 22 184-205 56-77 (81)
115 2w6a_A ARF GTPase-activating p 26.6 1.5E+02 0.0052 20.8 5.4 12 205-216 46-57 (63)
116 2wg5_A General control protein 26.4 57 0.0019 24.5 3.5 25 189-213 10-34 (109)
117 3vkg_A Dynein heavy chain, cyt 26.3 1.8E+02 0.0063 33.8 8.8 42 175-216 2024-2065(3245)
118 3v86_A De novo design helix; c 26.1 1E+02 0.0035 18.0 3.7 22 190-211 4-25 (27)
119 2v71_A Nuclear distribution pr 26.0 2.9E+02 0.0098 23.1 9.2 30 188-217 90-119 (189)
120 2pnv_A Small conductance calci 25.8 71 0.0024 20.8 3.4 21 189-209 19-39 (43)
121 1jnm_A Proto-oncogene C-JUN; B 25.1 1.6E+02 0.0054 19.7 7.2 28 187-214 30-57 (62)
122 3mq9_A Bone marrow stromal ant 25.0 3.2E+02 0.011 24.3 8.8 7 189-195 432-438 (471)
123 1ik9_A DNA repair protein XRCC 24.7 94 0.0032 26.2 4.9 31 188-218 134-164 (213)
124 2zqm_A Prefoldin beta subunit 24.4 1.5E+02 0.0053 21.3 5.6 29 185-213 83-111 (117)
125 1lwu_C Fibrinogen gamma chain; 24.1 2.4E+02 0.0083 25.2 7.7 32 185-216 25-56 (323)
126 3pjs_K KCSA, voltage-gated pot 24.1 1.4E+02 0.005 23.2 5.7 28 183-210 135-162 (166)
127 1fmh_B General control protein 24.0 1.3E+02 0.0044 18.3 4.8 28 189-216 4-31 (33)
128 1sxe_A Transcriptional regulat 23.8 23 0.0008 26.5 0.8 45 47-91 23-78 (97)
129 3coq_A Regulatory protein GAL4 23.3 81 0.0028 21.6 3.6 20 186-205 45-64 (89)
130 1sxd_A GA repeat binding prote 23.2 28 0.00097 25.7 1.2 42 49-90 21-72 (91)
131 2jv3_A ETS1 proto-oncogene; ET 23.2 27 0.00092 26.8 1.1 45 47-91 37-91 (110)
132 3ljm_A Coil Ser L9C; de novo d 23.1 1.3E+02 0.0045 18.1 4.3 25 189-213 4-28 (31)
133 2l5g_A GPS2 protein, G protein 22.9 1E+02 0.0036 19.7 3.6 19 186-204 15-33 (38)
134 1fxk_A Prefoldin; archaeal pro 22.8 1.8E+02 0.0061 20.7 5.6 22 188-209 81-102 (107)
135 3ra3_A P1C; coiled coil domain 22.7 1E+02 0.0036 18.1 3.3 19 198-216 5-23 (28)
136 3efg_A Protein SLYX homolog; x 22.3 1.7E+02 0.0058 20.9 5.2 21 195-215 37-57 (78)
137 2ytu_A Friend leukemia integra 22.1 30 0.001 27.3 1.2 46 47-92 34-90 (128)
138 1hlo_A Protein (transcription 22.0 2.1E+02 0.007 19.9 6.9 22 195-216 59-80 (80)
139 2ve7_A Kinetochore protein HEC 22.0 1.3E+02 0.0043 26.6 5.4 34 185-218 170-210 (315)
140 2e8p_A ELF3 protein; cell-free 21.3 32 0.0011 25.7 1.2 43 49-91 22-76 (92)
141 1sv0_C Modulator of the activi 21.3 33 0.0011 24.6 1.2 12 79-90 51-62 (82)
142 3q4f_C DNA repair protein XRCC 21.2 1.5E+02 0.0051 24.9 5.3 31 187-217 155-185 (186)
143 1wlq_A Geminin; coiled-coil; 2 21.2 1.3E+02 0.0046 22.2 4.5 29 185-213 44-72 (83)
144 3kin_B Kinesin heavy chain; mo 21.2 1.3E+02 0.0045 22.8 4.7 8 79-86 30-37 (117)
145 3m9b_A Proteasome-associated A 21.1 1.2E+02 0.004 26.6 4.9 22 191-212 73-94 (251)
146 2zxx_A Geminin; coiled-coil, c 20.7 91 0.0031 22.8 3.4 25 187-211 42-66 (79)
147 1jcd_A Major outer membrane li 20.5 2E+02 0.0069 19.3 5.1 29 187-215 5-33 (52)
148 1wt6_A Myotonin-protein kinase 20.3 1.3E+02 0.0044 22.2 4.2 48 171-218 23-70 (81)
149 2wvr_A Geminin; DNA replicatio 20.3 1.8E+02 0.0061 24.9 5.7 26 189-214 118-143 (209)
150 2v71_A Nuclear distribution pr 20.0 1.6E+02 0.0056 24.6 5.4 19 190-208 46-64 (189)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.66 E-value=1.7e-16 Score=111.04 Aligned_cols=54 Identities=33% Similarity=0.447 Sum_probs=51.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
||++||++||+||++||.|||+|+++||.+|..|+.||..|+.++..|...+.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~~ 54 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSH 54 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999999999999999999999999999987754
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.41 E-value=6.9e-13 Score=94.53 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+||++|+++||++|++||.||++|+.+|+.+|..|+.+|..|+.++..|..+..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999987764
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.35 E-value=2.3e-12 Score=91.04 Aligned_cols=53 Identities=30% Similarity=0.372 Sum_probs=50.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
||++|+++||++|++||.||++|+.+||.+|..|+.+|..|..++..|..++.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999998875
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.30 E-value=5.2e-12 Score=90.43 Aligned_cols=50 Identities=28% Similarity=0.187 Sum_probs=44.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 168 RRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 168 rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
++..+||+||++||.||++|+.+||.+|..|+.+|..|..+++.|.....
T Consensus 12 ~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 12 LKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345999999999999999999999999999999999999999987654
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.27 E-value=1.4e-11 Score=87.33 Aligned_cols=53 Identities=26% Similarity=0.324 Sum_probs=49.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
|+.+|..+||++|++||.||++|+.+||.+|..|+.+|..|..++..|..+++
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999998875
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.98 E-value=9.7e-10 Score=78.39 Aligned_cols=53 Identities=26% Similarity=0.290 Sum_probs=45.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
|+++++.+||.+|+|+|.||++++.+|+.++..|+.+|..|+.++..|..++.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999998875
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.76 E-value=2.9e-08 Score=73.88 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 160 e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
|+..+.-..|..+|.++|++||.+++....+++.+|..|+.||..|+.+++.|..++.
T Consensus 10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556788999999999999999999999999999999999999999988764
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.69 E-value=5.8e-08 Score=73.63 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 160 e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
|+.+++-..|..+|.++|++||.+++....+++.++..|+.||..|+.+++.|..++.
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667788999999999999999999999999999999999999999988764
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.49 E-value=3.7e-07 Score=66.68 Aligned_cols=51 Identities=27% Similarity=0.240 Sum_probs=41.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhh
Q 027587 167 QRRMIKNRESAARSRERKQAYQVELESLAVRLE-------EENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 167 ~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~-------~EN~~L~~~~e~l~~~~~ 217 (221)
.+|+..||.+++..|.||++|+.+||.+|..|+ .||..|+.++..|..++.
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999999886 455556666666666654
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.41 E-value=3.7e-08 Score=77.30 Aligned_cols=57 Identities=28% Similarity=0.325 Sum_probs=43.6
Q ss_pred CcccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 157 ~~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
...+....|.+||..|||.+|++||.||.+.+.+||.++..|..+.+.|..++..|.
T Consensus 29 s~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~ 85 (107)
T 3a5t_A 29 SKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMK 85 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHH
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677899999999999999999999999999999766655544444444444443
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.94 E-value=5.5e-05 Score=57.67 Aligned_cols=58 Identities=24% Similarity=0.206 Sum_probs=46.3
Q ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 158 ~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
..+....|..||-.|||..|+.||.||-....+||.++..|..+-+.|+.++..+..+
T Consensus 20 ~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e 77 (90)
T 2wt7_B 20 KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARE 77 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999999999999999999988777666666666666555543
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.20 E-value=0.00047 Score=45.76 Aligned_cols=33 Identities=30% Similarity=0.281 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
|+|+.+||.++..|+..|.+|..++..|+.+|.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 689999999999999999999999999999885
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.50 E-value=0.007 Score=46.20 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=30.4
Q ss_pred CcccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027587 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELES 193 (221)
Q Consensus 157 ~~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~ 193 (221)
........|..||..|||..|++||+||-+.+.+|+.
T Consensus 54 s~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 54 SEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 3445667899999999999999999999998887764
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=92.85 E-value=0.63 Score=32.63 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=34.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 170 MIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 170 ~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
.-|||..+++||+|=+..++-...-...-.+||++|+--+..+
T Consensus 6 ryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l~kqm 48 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLLKQM 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHh
Confidence 4579999999999988877777666667779999988655443
No 15
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=91.59 E-value=0.21 Score=31.43 Aligned_cols=27 Identities=22% Similarity=0.057 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
++.||.+|+.|-.+|..|..+++-|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 568999999999999999999988875
No 16
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=91.54 E-value=0.26 Score=31.22 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.++.||.+|+.|-.+|..|..+++.|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4689999999999999999999988875
No 17
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=91.51 E-value=0.29 Score=31.36 Aligned_cols=32 Identities=19% Similarity=0.039 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
.++.||.+|+.|-.+|..|..+++-|+.-+.+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999988865543
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=90.25 E-value=0.3 Score=31.26 Aligned_cols=32 Identities=28% Similarity=0.105 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
.++.||.+|+.|..+|..|..++.-|+.-+.+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 35789999999999999999999888866543
No 19
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=89.01 E-value=2.4 Score=32.79 Aligned_cols=31 Identities=39% Similarity=0.295 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
-+.+.+|+.+|.+|+.||..|+++.+.....
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4678899999999999999999998876654
No 20
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=88.87 E-value=0.74 Score=33.23 Aligned_cols=34 Identities=6% Similarity=0.060 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
-.|+..|+.++..|+.+...|+++++.|.....+
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999988877654
No 21
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=87.74 E-value=0.85 Score=33.18 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
-.|+..|+.++..|+++|..|+.+++...
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 48999999999999999999999988765
No 22
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=87.67 E-value=3.6 Score=30.74 Aligned_cols=66 Identities=15% Similarity=0.044 Sum_probs=36.8
Q ss_pred CcccccCCcccHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 150 KRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQ--AYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 150 ~r~r~~~~~~e~~~~rr~rR~ikNReSA~rSR~RKk--ay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
+..|...+..-+.+.-+.-+-++.++-.+..-.||+ .-+..-..++..|+++..++++.+..|...
T Consensus 13 gsir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 13 GAVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333433334334444444444455555555556665 445555567788888888888888888653
No 23
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=87.47 E-value=0.82 Score=28.89 Aligned_cols=28 Identities=7% Similarity=-0.104 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.++.||.+|+.|-.+|..|..++.-|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4689999999999999999999888765
No 24
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=86.48 E-value=1.4 Score=27.72 Aligned_cols=27 Identities=4% Similarity=-0.066 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
++.||.+|+.|-.+|..|..++.-|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 578999999999999999999888765
No 25
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=86.47 E-value=0.91 Score=27.66 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
.|-.-+..|+.||.+|+.++++|..+.-
T Consensus 3 qlnallasleaenkqlkakveellakvg 30 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAKVG 30 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677899999999999999987653
No 26
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=85.84 E-value=0.069 Score=40.64 Aligned_cols=30 Identities=30% Similarity=0.224 Sum_probs=25.3
Q ss_pred CcccHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027587 157 EPLDKAAQQRQRRMIKNRESAARSRERKQA 186 (221)
Q Consensus 157 ~~~e~~~~rr~rR~ikNReSA~rSR~RKka 186 (221)
........|..||.-|||..|++||+||-.
T Consensus 58 s~~Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 58 TESQLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 445566789999999999999999999853
No 27
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=85.24 E-value=2 Score=31.21 Aligned_cols=34 Identities=15% Similarity=0.003 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 184 KQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 184 Kkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
-.+||..|+.+...|..|+..|+++++.|..+.+
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999999999999999987654
No 28
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=84.82 E-value=2.1 Score=26.41 Aligned_cols=29 Identities=28% Similarity=0.125 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
+..||.+|.+-+.||-+|..++..|.-+|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 45799999999999999999999998776
No 29
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=84.62 E-value=1.6 Score=29.96 Aligned_cols=27 Identities=22% Similarity=0.017 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.+.|-.+|+.|+.||..|+++++.-.+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~ 31 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSN 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 367889999999999999999977554
No 30
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.56 E-value=1.2 Score=30.43 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027587 190 ELESLAVRLEEENEQLLKE 208 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~ 208 (221)
+|..++..|++++.+|+++
T Consensus 30 eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 30 EMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 31
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=83.63 E-value=2.2 Score=26.75 Aligned_cols=27 Identities=11% Similarity=-0.132 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
++.||.+|+.|-.+|..|..+++-|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 578999999999999999999887765
No 32
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=83.50 E-value=1.5 Score=27.69 Aligned_cols=28 Identities=7% Similarity=-0.096 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.+..||.+|+.|-.+|..|..++.-|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3578999999999999999999887764
No 33
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=83.05 E-value=1.6 Score=27.56 Aligned_cols=28 Identities=7% Similarity=-0.024 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.++.||.+|+.|-.+|..|..++.-|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4678999999999999999999887764
No 34
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=82.87 E-value=1.7 Score=27.49 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
.++.||.+|+.|-.+|..|..+++-|+.-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35789999999999999999999888753
No 35
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=81.72 E-value=1.6 Score=32.20 Aligned_cols=22 Identities=32% Similarity=0.216 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027587 186 AYQVELESLAVRLEEENEQLLK 207 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~ 207 (221)
+.|.+|+.++.+|+.||.-|+.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888877764
No 36
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=81.35 E-value=3.3 Score=27.30 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 186 AYQVELESLAVRLEEENEQLLKEK 209 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~ 209 (221)
....+||.+|+.|+.||.-|++-+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 345799999999999999998754
No 37
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=78.89 E-value=1.1 Score=35.11 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e 210 (221)
-+++|..++.+|+-||..|++++.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999874
No 38
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=78.84 E-value=2.1 Score=29.21 Aligned_cols=30 Identities=3% Similarity=-0.126 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
+|++.+...+..|..||..|+.+++.|..+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 688889999999999999999999887653
No 39
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=78.71 E-value=3.6 Score=30.28 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
-+|+..|+.+...|..+...|+++...|..+.
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899888887766655555555555555443
No 40
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=74.18 E-value=5.4 Score=30.61 Aligned_cols=31 Identities=23% Similarity=0.080 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
-+..|..++..|+.||.+|+++++.|..+..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999998876643
No 41
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=73.61 E-value=3 Score=29.87 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 185 QAYQVELESLAVRLEEENEQLLKE 208 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~ 208 (221)
-.|+..|+.++..|+.++..|+++
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367777777777777777776654
No 42
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=72.76 E-value=4.8 Score=28.86 Aligned_cols=23 Identities=22% Similarity=0.062 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027587 190 ELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
.|..+...|+.++..|..++..+
T Consensus 47 ~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 47 STTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566677777777777776654
No 43
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=72.37 E-value=2.7 Score=28.38 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e 210 (221)
..|+..|+.++..|+..+..|+..+.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35888999999998888888776543
No 44
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=69.67 E-value=6.2 Score=26.15 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEK 209 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~ 209 (221)
.+..||.+|..|+.||+.|+++.
T Consensus 4 lvaqlenevaslenenetlkkkn 26 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhc
Confidence 35678999999999999888763
No 45
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=69.44 E-value=9.7 Score=23.99 Aligned_cols=27 Identities=4% Similarity=-0.188 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
++.||.+|+.|-.+|..|..++.-|..
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 578999999999999999888877654
No 46
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=68.43 E-value=16 Score=37.68 Aligned_cols=30 Identities=33% Similarity=0.319 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
+...++|+.+|..|++||..|++++.+|..
T Consensus 1015 ~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568888999999999999999888874
No 47
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.27 E-value=7.1 Score=28.39 Aligned_cols=33 Identities=21% Similarity=0.015 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 182 ERKQAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 182 ~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
+.|.+.+.+||.++..+..+..+|+.++-.+++
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457778999999999999999999988876654
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.41 E-value=41 Score=26.58 Aligned_cols=42 Identities=12% Similarity=-0.102 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 176 SAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 176 SA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+-..--...+..+++++.++..|++++..|.+++..|..+..
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566677777777777888888887777776654
No 49
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.66 E-value=11 Score=25.54 Aligned_cols=26 Identities=12% Similarity=-0.074 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 193 SLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 193 ~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
..|..|+.||..|+.+++.|..++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666655543
No 50
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=66.42 E-value=20 Score=24.77 Aligned_cols=55 Identities=35% Similarity=0.239 Sum_probs=35.2
Q ss_pred CCcccHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 156 LEPLDKAAQQRQRRMIKNRESAARSRERKQ---AYQVELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 156 ~~~~e~~~~rr~rR~ikNReSA~rSR~RKk---ay~~eLE~~v~~L~~EN~~L~~~~e 210 (221)
+++.|+...||.+=.+.-|-|-.|-..+=. ..+..|+.+...|+.+...|+.++.
T Consensus 4 ~~~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 4 PESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777777777666666553 4456788999999999999988764
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.63 E-value=27 Score=31.55 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 179 RSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 179 rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
.-|.|.+.+++....+..+|++||++|++.++++....++
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 3566677788888888999999999999998888765443
No 52
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=64.93 E-value=23 Score=27.96 Aligned_cols=33 Identities=21% Similarity=0.024 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
++.+.+|+-++..|..+......+++.|+.++.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 445788888888777777776667777766654
No 53
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=61.44 E-value=33 Score=24.88 Aligned_cols=66 Identities=26% Similarity=0.253 Sum_probs=42.7
Q ss_pred CCcccccCCcccHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 149 GKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERK---QAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 149 ~~r~r~~~~~~e~~~~rr~rR~ikNReSA~rSR~RK---kay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
|++++.++...++--+||.+==+.=|-|-...|.|- +..+.+|+.+-..|+.+...|.+++..|..
T Consensus 3 ~~~kk~~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 3 SKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccCCcccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445544455556667776666666655555554 345778999999999999999999988874
No 54
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=61.13 E-value=11 Score=31.78 Aligned_cols=29 Identities=24% Similarity=0.128 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
+.+|..++.+|+++|++|+++....+.+.
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788888888888888888877666543
No 55
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=60.79 E-value=7.5 Score=23.12 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 027587 195 AVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 195 v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+.+|+..|.+|+.++..|.-+.+
T Consensus 2 irrlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHH
Confidence 34566666666666666654443
No 56
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=59.07 E-value=26 Score=22.85 Aligned_cols=34 Identities=26% Similarity=0.175 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
|-|+.+||.+-..|+.--+.|+-...+|.-+.++
T Consensus 9 knyiqeleernaelknlkehlkfakaelefelaa 42 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFAKAELEFELAA 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHh
Confidence 5689999988887777777777666666655443
No 57
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=57.75 E-value=9.7 Score=27.18 Aligned_cols=25 Identities=12% Similarity=-0.027 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
...|+.++..|+.+|..|+.++..|
T Consensus 56 ~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 56 NHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888888999999998888765
No 58
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=56.92 E-value=6.1 Score=26.82 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027587 185 QAYQVELESLAVRLEEENEQLL 206 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~ 206 (221)
..|+..||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3788899999988887666553
No 59
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=56.33 E-value=14 Score=27.15 Aligned_cols=32 Identities=25% Similarity=0.193 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYVTNAEE 219 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~~ 219 (221)
++.|..++..|.+.|.+|..++.-|+..+.-|
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~aspE 48 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTLASPE 48 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 46889999999999999999999998776554
No 60
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=55.01 E-value=3.1 Score=30.80 Aligned_cols=10 Identities=40% Similarity=0.833 Sum_probs=9.5
Q ss_pred CChHHHhhhh
Q 027587 1 MTVDGILRNV 10 (221)
Q Consensus 1 MnmDelL~ni 10 (221)
||||++||+|
T Consensus 1 ~~~e~~Lr~I 10 (79)
T 2p22_D 1 MNVEELLRRI 10 (79)
T ss_dssp CHHHHHHHHS
T ss_pred CCHHHHHhcC
Confidence 9999999998
No 61
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=53.26 E-value=22 Score=25.32 Aligned_cols=33 Identities=24% Similarity=0.089 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 183 RKQAYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 183 RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
.|.+.+.+||..+..-..|+.+|+.++..+++-
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478889999999999999999999988776543
No 62
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=51.72 E-value=43 Score=27.47 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027587 179 RSRERKQAYQVELESLAVRLE 199 (221)
Q Consensus 179 rSR~RKkay~~eLE~~v~~L~ 199 (221)
.+-++|++|+.+|..+...++
T Consensus 19 ~rI~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 19 ERIKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344789999999998877654
No 63
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=51.17 E-value=24 Score=25.76 Aligned_cols=24 Identities=25% Similarity=0.016 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
.|+.++..|+.+|..|+++++.|+
T Consensus 63 ~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 63 KLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666789999999999998875
No 64
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=50.71 E-value=57 Score=22.31 Aligned_cols=25 Identities=32% Similarity=0.235 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
.+|+.+...|+.+...|+.++..|.
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 65
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=49.55 E-value=0.38 Score=36.52 Aligned_cols=28 Identities=32% Similarity=0.271 Sum_probs=23.2
Q ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHH
Q 027587 158 PLDKAAQQRQRRMIKNRESAARSRERKQ 185 (221)
Q Consensus 158 ~~e~~~~rr~rR~ikNReSA~rSR~RKk 185 (221)
.......+..||.-|||..|+++|+||-
T Consensus 59 ~~Ql~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 59 EAQLALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcchhhc
Confidence 4445567889999999999999999874
No 66
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.18 E-value=83 Score=28.84 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
++.|+.++..++...+.-++++.++.
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 34333444444433333333333333
No 67
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.88 E-value=33 Score=25.30 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027587 191 LESLAVRLEEENEQLLKEK 209 (221)
Q Consensus 191 LE~~v~~L~~EN~~L~~~~ 209 (221)
|..++..|+++|..|..+.
T Consensus 25 LqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 68
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=48.88 E-value=26 Score=25.33 Aligned_cols=23 Identities=13% Similarity=-0.097 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027587 191 LESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 191 LE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
+..++..++.+|..|..++..++
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le 27 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEME 27 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444444444444444444
No 69
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=47.15 E-value=1.1e+02 Score=25.28 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
++....+..-=+.=+++|.+-.+.+.+|+.++..|..|..+++.....+..
T Consensus 68 eke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~ 118 (168)
T 3o0z_A 68 DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEG 118 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555667778888888888888888887777777665554443
No 70
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=45.22 E-value=49 Score=24.55 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027587 191 LESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 191 LE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
|..+|..|++|+..|+.++++|+
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555544
No 71
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=43.85 E-value=42 Score=24.80 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
+.+.+.|.+...|+..|..|..++.+|.-.+
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3345677888889999999999999887654
No 72
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=43.50 E-value=22 Score=24.78 Aligned_cols=24 Identities=21% Similarity=0.030 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
..|-.+|.+|+..+.+...+++-|
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666655555544444443
No 73
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=43.45 E-value=26 Score=25.23 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
..|+.+...|+.+|..|+++++.|
T Consensus 57 ~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456677788888999998888754
No 74
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=43.18 E-value=49 Score=24.38 Aligned_cols=9 Identities=22% Similarity=0.087 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 027587 189 VELESLAVR 197 (221)
Q Consensus 189 ~eLE~~v~~ 197 (221)
++|..+-..
T Consensus 30 eELKekN~~ 38 (81)
T 2jee_A 30 EELKEKNNS 38 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 75
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=42.80 E-value=22 Score=30.09 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027587 188 QVELESLAVRLEEENEQLLKEK 209 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~ 209 (221)
+.+|+.+..+|.+||++|.++.
T Consensus 163 i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 163 IAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777777777777653
No 76
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.38 E-value=23 Score=27.69 Aligned_cols=27 Identities=22% Similarity=-0.013 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
+|..+|..|.+|+.+|+++++.|+.+.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666543
No 77
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=41.86 E-value=45 Score=20.94 Aligned_cols=23 Identities=13% Similarity=-0.010 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027587 190 ELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
.....+..|+.+|..|..++..|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 45566677888888887776544
No 78
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=41.15 E-value=17 Score=27.99 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 027587 161 KAAQQRQRRMIKNRESAARSR-----------------ERKQAYQVELESLAVRLEE----------ENEQLLKEKVIRY 213 (221)
Q Consensus 161 ~~~~rr~rR~ikNReSA~rSR-----------------~RKkay~~eLE~~v~~L~~----------EN~~L~~~~e~l~ 213 (221)
...||+.|-.|.++-.+=++= .+--.|+..|+.++..|++ +|..|..++++|.
T Consensus 32 n~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 32 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELE 111 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777766553321 1123788999887776654 4777777777776
Q ss_pred Hh
Q 027587 214 VT 215 (221)
Q Consensus 214 ~~ 215 (221)
..
T Consensus 112 ~~ 113 (118)
T 4ati_A 112 MQ 113 (118)
T ss_dssp --
T ss_pred HH
Confidence 43
No 79
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.97 E-value=73 Score=22.99 Aligned_cols=32 Identities=16% Similarity=-0.116 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
-+-+...+..+..|+.+..+....+..|++++
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555444
No 80
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.60 E-value=1.3e+02 Score=27.48 Aligned_cols=29 Identities=7% Similarity=-0.118 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
++++-..++..|++|+..+++++.+|..+
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666666666666666543
No 81
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=39.42 E-value=1e+02 Score=26.67 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhH-HHHHHHHHHHHHHHHHH
Q 027587 164 QQRQRRMIKNRE-SAARSRERKQAYQVELE 192 (221)
Q Consensus 164 ~rr~rR~ikNRe-SA~rSR~RKkay~~eLE 192 (221)
-|-.-.-|+||| |=+.+|.||+.-..++.
T Consensus 92 yR~~LK~IR~~E~svqp~R~~R~~l~~~I~ 121 (234)
T 3plt_A 92 YRVTLKSIRNIEASVQPSRDRKEKITDEIA 121 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455556677887 55777777765544443
No 82
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=39.17 E-value=96 Score=22.10 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 179 RSRERKQAYQVELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 179 rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
+-|...+.-+..||.++.+++.+-....++.+.|
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~L 38 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQEL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777666665555554443
No 83
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=38.84 E-value=1.1e+02 Score=22.41 Aligned_cols=65 Identities=26% Similarity=0.255 Sum_probs=39.4
Q ss_pred CcccccCCcccHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 150 KRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERK---QAYQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 150 ~r~r~~~~~~e~~~~rr~rR~ikNReSA~rSR~RK---kay~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
+.++..+...++--+||.+=-+.=|-|-...|.|- +..+.+|+.+-..|+.+...|.+++..|..
T Consensus 4 k~kk~~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 4 KAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp ------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCcCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555667666665555554444443 345678888888888888888888877764
No 84
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=38.75 E-value=49 Score=27.74 Aligned_cols=33 Identities=15% Similarity=-0.022 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
++++..|=..+..|+++|.+|.++++.|+.+-+
T Consensus 144 ~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 144 RELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888999999999999999999987754
No 85
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=38.10 E-value=1.2e+02 Score=23.35 Aligned_cols=30 Identities=23% Similarity=-0.037 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+..|+..+..|+..|..|...+.+|.+.|+
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~ND 66 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQAND 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 567888888999999999988888888775
No 86
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=38.08 E-value=34 Score=29.49 Aligned_cols=37 Identities=8% Similarity=-0.171 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 182 ERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 182 ~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
.......+++..++.+|.+||.+++.+++.|+.+..+
T Consensus 144 ~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334445566777888888888888888777765443
No 87
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.08 E-value=89 Score=20.90 Aligned_cols=28 Identities=25% Similarity=0.122 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
+..|+.+...|..+...|+.++..|...
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777666543
No 88
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=36.94 E-value=34 Score=30.03 Aligned_cols=31 Identities=13% Similarity=-0.038 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
..+..|+.+...|+++..+|++++..|+.++
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555554444443
No 89
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=36.42 E-value=52 Score=22.10 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
..|-.+|..|+.-+.++.++++.|
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHH
Confidence 344455555554444444444433
No 90
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.38 E-value=66 Score=23.86 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
...++.|+.++..|+.+|.+|+.-.+..
T Consensus 52 h~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 52 HKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447889999999999999998766544
No 91
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=34.86 E-value=1.4e+02 Score=22.07 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
+.|.+...|..|...|++++++|+..
T Consensus 49 eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 49 EAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444455555555555555555543
No 92
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=34.54 E-value=78 Score=24.96 Aligned_cols=27 Identities=15% Similarity=-0.007 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
..|-.++..+..+++.+.++++.|..+
T Consensus 92 ~~lK~el~~~~~k~e~~~~e~~~l~~~ 118 (138)
T 3hnw_A 92 YDLKHELIAAQIKAESSAKEIKELKSE 118 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 93
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.73 E-value=44 Score=24.66 Aligned_cols=23 Identities=26% Similarity=0.076 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027587 193 SLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 193 ~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
.+|..|+.+|..|..++..++..
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 46777777777777777766643
No 94
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=32.69 E-value=77 Score=20.94 Aligned_cols=9 Identities=0% Similarity=-0.267 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 027587 205 LLKEKVIRY 213 (221)
Q Consensus 205 L~~~~e~l~ 213 (221)
|++++..|.
T Consensus 35 lKqRit~lE 43 (46)
T 3swy_A 35 MKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 95
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=32.61 E-value=16 Score=25.38 Aligned_cols=10 Identities=40% Similarity=0.910 Sum_probs=8.9
Q ss_pred CCCcHHHHHH
Q 027587 52 AMKSVDDVWR 61 (221)
Q Consensus 52 skKTVDEVWr 61 (221)
..||||+||-
T Consensus 35 nakTVeGV~a 44 (56)
T 2jws_A 35 NAKTVEGVWT 44 (56)
T ss_dssp TCSCHHHHHH
T ss_pred cccccccccc
Confidence 6799999996
No 96
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=32.53 E-value=1.7e+02 Score=22.46 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
..-.+|..|+.|..+|+.++..|..+|+
T Consensus 62 ~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 62 RLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888899999999999988888875
No 97
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.15 E-value=77 Score=30.83 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 177 AARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 177 A~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
+......+.+|.++||.++..|+++...-..++..|++.
T Consensus 101 ~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 101 ANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777888889988888887766544555555543
No 98
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.00 E-value=75 Score=23.73 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
..|..++..|..||.++.++...+...+.
T Consensus 58 ~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 58 TQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677777776666666665543
No 99
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=31.98 E-value=21 Score=22.70 Aligned_cols=19 Identities=32% Similarity=0.225 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027587 193 SLAVRLEEENEQLLKEKVI 211 (221)
Q Consensus 193 ~~v~~L~~EN~~L~~~~e~ 211 (221)
.+|..|+.+|..|..++..
T Consensus 20 dkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5788999999999887753
No 100
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=31.97 E-value=1.1e+02 Score=21.12 Aligned_cols=25 Identities=32% Similarity=0.086 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e 210 (221)
+.+..||.+-..-+.|+.+|.+-+.
T Consensus 25 ~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 25 AKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777766543
No 101
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=31.19 E-value=17 Score=26.67 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=24.7
Q ss_pred cCCCCCcHHHHHHHHHhCccc----cch-hh-hhc---c-cccHHHHHhhccc
Q 027587 49 SAGAMKSVDDVWREIVSGEKK----EMK-EE-AID---E-MMTLEDFLAKAGA 91 (221)
Q Consensus 49 ~~lskKTVDEVWrdIq~~~~~----~~~-~~-~~~---~-eMTLEDFLvkAGv 91 (221)
....-=|.+.|+.=|+-.... ... .. ... . .||.|||+.+++.
T Consensus 8 ~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~m~G~~LC~ls~edF~~~~p~ 60 (85)
T 1sv0_A 8 SDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG 60 (85)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHSTT
T ss_pred CChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHcCC
Confidence 345556788888776643111 000 00 011 1 6999999999873
No 102
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=31.00 E-value=1e+02 Score=27.52 Aligned_cols=8 Identities=0% Similarity=-0.292 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 027587 56 VDDVWREI 63 (221)
Q Consensus 56 VDEVWrdI 63 (221)
.|+.|+=|
T Consensus 287 ~eaA~~Fi 294 (471)
T 3mq9_A 287 KELAKEFL 294 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 103
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=30.00 E-value=41 Score=22.89 Aligned_cols=16 Identities=38% Similarity=0.437 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 027587 177 AARSRERKQAYQVELE 192 (221)
Q Consensus 177 A~rSR~RKkay~~eLE 192 (221)
.-.||.-||+|+.+|-
T Consensus 14 S~LS~~~K~sYi~~L~ 29 (53)
T 1r4g_A 14 SPLSRAEKAAYVKSLS 29 (53)
T ss_dssp SCCCSHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHH
Confidence 3457899999999997
No 104
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.36 E-value=89 Score=25.52 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKE 208 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~ 208 (221)
..||.++..|++||..|-.+
T Consensus 113 n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 113 NVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444
No 105
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=29.34 E-value=80 Score=23.42 Aligned_cols=25 Identities=32% Similarity=0.227 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
.|+.++..|+++-.+|.+++..+..
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555543
No 106
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=29.21 E-value=55 Score=28.00 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e 210 (221)
.+.....++..|+.||.+|++.+.
T Consensus 37 ~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 37 ELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455667788889999987654
No 107
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.12 E-value=75 Score=27.24 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 186 AYQVELESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L~~~~e~l 212 (221)
..++.|+.++..|++||.+|+.-.+.+
T Consensus 122 ~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888877655443
No 108
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.52 E-value=80 Score=21.81 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
.|--+|..|+.||.+|++-+++-+
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEq 37 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQ 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888877776543
No 109
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.48 E-value=20 Score=26.80 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=11.0
Q ss_pred cccHHHHHhhcc
Q 027587 79 MMTLEDFLAKAG 90 (221)
Q Consensus 79 eMTLEDFLvkAG 90 (221)
.||.|||+.+++
T Consensus 62 ~lskedF~~~~p 73 (96)
T 2dkx_A 62 AMSEEQFRQRSP 73 (96)
T ss_dssp HSCHHHHHHHCS
T ss_pred hCCHHHHHHHcC
Confidence 699999999986
No 110
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.22 E-value=19 Score=27.01 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=26.9
Q ss_pred cccCCCCCcHHHHHHHHHhCc----cccch-hh--hhcc----cccHHHHHhhcccc
Q 027587 47 AVSAGAMKSVDDVWREIVSGE----KKEMK-EE--AIDE----MMTLEDFLAKAGAV 92 (221)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~----~~~~~-~~--~~~~----eMTLEDFLvkAGvv 92 (221)
.+....-=|.+.|+.=|+-.. ..... .. ...+ .||.|||+.+++.+
T Consensus 20 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~~~~F~~m~G~~LC~ls~edF~~~~~~~ 76 (98)
T 1x66_A 20 VPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLY 76 (98)
T ss_dssp CCSSGGGCCTTHHHHHHHHHHHHTTCCSCCGGGGTTCCHHHHHHCCHHHHHTTSCHH
T ss_pred CCCChhhcCHHHHHHHHHHHHHhcCCCCCChhhCCCCCHHHHHcCCHHHHHHHcCCC
Confidence 445666778888888666431 11110 00 1111 69999999998753
No 111
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=28.21 E-value=92 Score=20.98 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 190 ELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
.||.-|.+|+..|..|.+.+..|...
T Consensus 21 klenivarlendnanlekdianlekd 46 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEKD 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHH
Confidence 46777777777777777777666543
No 112
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=28.06 E-value=1.1e+02 Score=23.34 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=6.3
Q ss_pred ccHHHHHHHHHHH
Q 027587 159 LDKAAQQRQRRMI 171 (221)
Q Consensus 159 ~e~~~~rr~rR~i 171 (221)
.-+...+..|+.|
T Consensus 17 ~ye~~I~~LR~qi 29 (119)
T 3ol1_A 17 LYEEEMRELRRQV 29 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555554
No 113
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.05 E-value=1.2e+02 Score=22.35 Aligned_cols=35 Identities=11% Similarity=-0.017 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 182 ERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 182 ~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
.--..|+.+|..++..+..++.+|.-++..|....
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999888887766543
No 114
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=26.71 E-value=37 Score=23.14 Aligned_cols=22 Identities=18% Similarity=0.136 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027587 184 KQAYQVELESLAVRLEEENEQL 205 (221)
Q Consensus 184 Kkay~~eLE~~v~~L~~EN~~L 205 (221)
+..|+..|+.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999888665554
No 115
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=26.61 E-value=1.5e+02 Score=20.79 Aligned_cols=12 Identities=25% Similarity=0.069 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhh
Q 027587 205 LLKEKVIRYVTN 216 (221)
Q Consensus 205 L~~~~e~l~~~~ 216 (221)
|.+++..|+++|
T Consensus 46 mQ~~lq~LQsen 57 (63)
T 2w6a_A 46 LQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 333444555544
No 116
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=26.37 E-value=57 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
..|+.+...|+++...|+.++..|+
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666666666666654
No 117
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.26 E-value=1.8e+02 Score=33.85 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 175 ESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 175 eSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
..|...=..+++.+.+||.++..|+++-+.+.++.+.|+.+.
T Consensus 2024 ~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A 2024 NELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455667777777777777777766666666665543
No 118
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=26.10 E-value=1e+02 Score=18.03 Aligned_cols=22 Identities=23% Similarity=0.102 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027587 190 ELESLAVRLEEENEQLLKEKVI 211 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~~e~ 211 (221)
.|..+|-.|+-|-..|+.++..
T Consensus 4 qlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhc
Confidence 4445555555555555554443
No 119
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.00 E-value=2.9e+02 Score=23.05 Aligned_cols=30 Identities=23% Similarity=-0.037 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
+..|+.++..|+..+..|+..+.+|...|+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~ND 119 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQAND 119 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677888888888888888888888887765
No 120
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=25.83 E-value=71 Score=20.81 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEK 209 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~ 209 (221)
++||.++..|+.....|...+
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444433
No 121
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.12 E-value=1.6e+02 Score=19.73 Aligned_cols=28 Identities=11% Similarity=-0.027 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
-+.+|+.+...|..+...|..++..|..
T Consensus 30 ~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 30 KVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777665543
No 122
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.99 E-value=3.2e+02 Score=24.30 Aligned_cols=7 Identities=14% Similarity=0.235 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 027587 189 VELESLA 195 (221)
Q Consensus 189 ~eLE~~v 195 (221)
+.||.+|
T Consensus 432 ~~~~~~~ 438 (471)
T 3mq9_A 432 ASLDAEK 438 (471)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 123
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=24.66 E-value=94 Score=26.20 Aligned_cols=31 Identities=23% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 188 QVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
+.+|+.++..|.++|.+|.+.+..|..+.++
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 124
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.40 E-value=1.5e+02 Score=21.34 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
..-+..|+.++..++.+..+|+..+..+.
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777776666554
No 125
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.14 E-value=2.4e+02 Score=25.21 Aligned_cols=32 Identities=19% Similarity=-0.047 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
.+-+..|+.++..++....+|+.++.+|...+
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777777766654
No 126
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=24.06 E-value=1.4e+02 Score=23.24 Aligned_cols=28 Identities=14% Similarity=0.066 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 183 RKQAYQVELESLAVRLEEENEQLLKEKV 210 (221)
Q Consensus 183 RKkay~~eLE~~v~~L~~EN~~L~~~~e 210 (221)
+.++....++.++..|.++.++|++++.
T Consensus 135 ~~~~~~~~l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 135 SEKAAEEAYTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555667777777777777766554
No 127
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=23.96 E-value=1.3e+02 Score=18.33 Aligned_cols=28 Identities=11% Similarity=-0.071 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
.-|..+|..|+..|-.-+.++..|+-.|
T Consensus 4 qalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4577788888888888888888777665
No 128
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=23.79 E-value=23 Score=26.49 Aligned_cols=45 Identities=22% Similarity=0.173 Sum_probs=27.6
Q ss_pred cccCCCCCcHHHHHHHHHhCcc----ccch-hh--hhcc----cccHHHHHhhccc
Q 027587 47 AVSAGAMKSVDDVWREIVSGEK----KEMK-EE--AIDE----MMTLEDFLAKAGA 91 (221)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~~----~~~~-~~--~~~~----eMTLEDFLvkAGv 91 (221)
.+....-=|.+.|+.=|+-... .... .. ...+ .||.|||+.+++.
T Consensus 23 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~~m~G~~LC~lt~edF~~~~p~ 78 (97)
T 1sxe_A 23 VPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPS 78 (97)
T ss_dssp SCSSTTSCCHHHHHHHHHHHHHHHTCSSCCGGGSTTCCHHHHTTCCHHHHTTTSCH
T ss_pred CCcchhccCHHHHHHHHHHHHHhcCCCCCCHHhcCCCCHHHHHhCCHHHHHHHcCC
Confidence 4566777899999887764311 1100 00 0111 6999999999874
No 129
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=23.34 E-value=81 Score=21.63 Aligned_cols=20 Identities=35% Similarity=0.185 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027587 186 AYQVELESLAVRLEEENEQL 205 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~L 205 (221)
.|+..|+.++..|+.....|
T Consensus 45 ~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47788888888887766655
No 130
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=23.24 E-value=28 Score=25.73 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=23.7
Q ss_pred cCCCCCcHHHHHHHHHhCcc----ccch-hh-hhc---c-cccHHHHHhhcc
Q 027587 49 SAGAMKSVDDVWREIVSGEK----KEMK-EE-AID---E-MMTLEDFLAKAG 90 (221)
Q Consensus 49 ~~lskKTVDEVWrdIq~~~~----~~~~-~~-~~~---~-eMTLEDFLvkAG 90 (221)
....-=|.+.|+.=|+-... .... .. ... . .||.|||+.+++
T Consensus 21 ~DP~~Ws~~~V~~WL~W~~~ef~L~~v~~~~f~m~G~~LC~ls~edF~~~~p 72 (91)
T 1sxd_A 21 YDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVP 72 (91)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHTTCCCSCSGGGCSCHHHHHHSCHHHHHHHCT
T ss_pred CChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHCC
Confidence 44556678888876653311 1000 00 011 1 699999999975
No 131
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=23.23 E-value=27 Score=26.76 Aligned_cols=45 Identities=11% Similarity=0.027 Sum_probs=27.1
Q ss_pred cccCCCCCcHHHHHHHHHhCccc----cch-hh-hhc---c-cccHHHHHhhccc
Q 027587 47 AVSAGAMKSVDDVWREIVSGEKK----EMK-EE-AID---E-MMTLEDFLAKAGA 91 (221)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~~~----~~~-~~-~~~---~-eMTLEDFLvkAGv 91 (221)
.+....-=|.+.|+.=|+-.... ... .. ... . .||.|||+.+++.
T Consensus 37 ip~DP~~WS~~~V~~WL~W~~~ef~L~~v~~~~F~m~G~~LC~ls~edF~~~~p~ 91 (110)
T 2jv3_A 37 IPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPD 91 (110)
T ss_dssp CCSSSTTCCHHHHHHHHHHHHHHHTCCCCCTTTTCCCHHHHHHTHHHHHHHHSCH
T ss_pred CCCChHhCCHHHHHHHHHHHHHhcCCCCCChhcCCCCHHHHHhCCHHHHHHHcCC
Confidence 34566778889998877643111 000 00 011 1 6999999999875
No 132
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=23.08 E-value=1.3e+02 Score=18.07 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
+-||.+-..|+...+.|.++++.|.
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666777766654
No 133
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.88 E-value=1e+02 Score=19.66 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027587 186 AYQVELESLAVRLEEENEQ 204 (221)
Q Consensus 186 ay~~eLE~~v~~L~~EN~~ 204 (221)
+.+..|+.++..|++|-.+
T Consensus 15 eQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 134
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.75 E-value=1.8e+02 Score=20.69 Aligned_cols=22 Identities=9% Similarity=0.126 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027587 188 QVELESLAVRLEEENEQLLKEK 209 (221)
Q Consensus 188 ~~eLE~~v~~L~~EN~~L~~~~ 209 (221)
+..|+.+...++.+...|+..+
T Consensus 81 i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 81 EKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444444443
No 135
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.69 E-value=1e+02 Score=18.14 Aligned_cols=19 Identities=26% Similarity=0.111 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027587 198 LEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 198 L~~EN~~L~~~~e~l~~~~ 216 (221)
|+-||..|..++..|.++.
T Consensus 5 lefendaleqkiaalkqki 23 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 4445555555554444443
No 136
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.33 E-value=1.7e+02 Score=20.90 Aligned_cols=21 Identities=0% Similarity=-0.304 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027587 195 AVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 195 v~~L~~EN~~L~~~~e~l~~~ 215 (221)
|.....+..+|.+++..|..+
T Consensus 37 v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 37 LADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555443
No 137
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.14 E-value=30 Score=27.35 Aligned_cols=46 Identities=17% Similarity=0.094 Sum_probs=27.5
Q ss_pred cccCCCCCcHHHHHHHHHhCc----cccc--hhh-hhcc----cccHHHHHhhcccc
Q 027587 47 AVSAGAMKSVDDVWREIVSGE----KKEM--KEE-AIDE----MMTLEDFLAKAGAV 92 (221)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~----~~~~--~~~-~~~~----eMTLEDFLvkAGvv 92 (221)
.+....-=|.+.||.=|+-.. .... ..= ...+ .||.|||+.+++.+
T Consensus 34 IP~DP~~WS~~~V~~WL~Wa~~ef~L~~id~~~Fq~mnGk~LC~LskeDF~~~~p~~ 90 (128)
T 2ytu_A 34 VPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLY 90 (128)
T ss_dssp CCSCGGGCCTTHHHHHHHHHHHHTCCCSCCCGGGSSCCTTHHHHCCHHHHHHHSCHH
T ss_pred CCcchhhCCHHHHHHHHHHHHHhcCCCCCChHhCCCCCHHHHHcCCHHHHHHHcCCC
Confidence 456667778888988776431 1110 000 0111 69999999998764
No 138
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.04 E-value=2.1e+02 Score=19.95 Aligned_cols=22 Identities=9% Similarity=-0.083 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 027587 195 AVRLEEENEQLLKEKVIRYVTN 216 (221)
Q Consensus 195 v~~L~~EN~~L~~~~e~l~~~~ 216 (221)
+..|+.++..|..+++.|..+|
T Consensus 59 I~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4578888999999998888765
No 139
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=22.02 E-value=1.3e+02 Score=26.56 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 185 QAYQVELES-------LAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 185 kay~~eLE~-------~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
.++...|+. +++.|+++|..|.+++++|+.+-..
T Consensus 170 ~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~ 210 (315)
T 2ve7_A 170 AELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERST 210 (315)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 140
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.35 E-value=32 Score=25.69 Aligned_cols=43 Identities=16% Similarity=0.048 Sum_probs=25.5
Q ss_pred cCCCCCcHHHHHHHHHhCcc---ccchhhh-----hc---c-cccHHHHHhhccc
Q 027587 49 SAGAMKSVDDVWREIVSGEK---KEMKEEA-----ID---E-MMTLEDFLAKAGA 91 (221)
Q Consensus 49 ~~lskKTVDEVWrdIq~~~~---~~~~~~~-----~~---~-eMTLEDFLvkAGv 91 (221)
....-=|.+.||.=|+-.-+ -+...-. .. . -||.|||+.+++.
T Consensus 22 ~dP~~Ws~~~V~~WL~Wavke~~~dl~~i~~~~f~m~G~~LC~mskedF~~~~p~ 76 (92)
T 2e8p_A 22 EQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGP 76 (92)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHTTCCCSSCCTTTCCCCSHHHHHSCHHHHHHHSGG
T ss_pred CChhhcCHHHHHHHHHHHHHHhCCCCCCCChhhcCCCHHHHHcCCHHHHHHHcCC
Confidence 44556788999887764411 1100000 11 1 5999999999875
No 141
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1
Probab=21.33 E-value=33 Score=24.59 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=11.2
Q ss_pred cccHHHHHhhcc
Q 027587 79 MMTLEDFLAKAG 90 (221)
Q Consensus 79 eMTLEDFLvkAG 90 (221)
.||.|||+.+++
T Consensus 51 ~ls~edF~~~~p 62 (82)
T 1sv0_C 51 LMSLDMYLCRVP 62 (82)
T ss_dssp HCCHHHHHHHCT
T ss_pred hCCHHHHHhhCC
Confidence 699999999987
No 142
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=21.24 E-value=1.5e+02 Score=24.94 Aligned_cols=31 Identities=16% Similarity=-0.039 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVTNA 217 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~ 217 (221)
++.-.=.++..|+.+|..|.++++.|..+-+
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~e~~ 185 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLRDWN 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455556799999999999999999987653
No 143
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.18 E-value=1.3e+02 Score=22.18 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 185 QAYQVELESLAVRLEEENEQLLKEKVIRY 213 (221)
Q Consensus 185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~ 213 (221)
...++.++.++..|+++|.+|+.--+..+
T Consensus 44 h~~ie~~~eEi~~Lk~en~~L~elA~~~q 72 (83)
T 1wlq_A 44 HKEIEQKDSEIARLRKENKDLAEVAEHVQ 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 144
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.16 E-value=1.3e+02 Score=22.78 Aligned_cols=8 Identities=38% Similarity=0.364 Sum_probs=5.2
Q ss_pred cccHHHHH
Q 027587 79 MMTLEDFL 86 (221)
Q Consensus 79 eMTLEDFL 86 (221)
-+-|.|.|
T Consensus 30 T~lL~dsL 37 (117)
T 3kin_B 30 TRILQDSL 37 (117)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHHc
Confidence 45567777
No 145
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.14 E-value=1.2e+02 Score=26.63 Aligned_cols=22 Identities=14% Similarity=-0.112 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027587 191 LESLAVRLEEENEQLLKEKVIR 212 (221)
Q Consensus 191 LE~~v~~L~~EN~~L~~~~e~l 212 (221)
|...+..++.|..+|+.+++.|
T Consensus 73 L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444
No 146
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.67 E-value=91 Score=22.83 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVI 211 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~ 211 (221)
.++.+..++..|++||..|+.-...
T Consensus 42 ~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 42 EIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777776554443
No 147
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.45 E-value=2e+02 Score=19.26 Aligned_cols=29 Identities=10% Similarity=-0.068 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587 187 YQVELESLAVRLEEENEQLLKEKVIRYVT 215 (221)
Q Consensus 187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~ 215 (221)
-+++|..+|..|...-..|...+..|+..
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666655543
No 148
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=20.28 E-value=1.3e+02 Score=22.17 Aligned_cols=48 Identities=17% Similarity=0.043 Sum_probs=31.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587 171 IKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218 (221)
Q Consensus 171 ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~ 218 (221)
|+.+.+-++-=.+=+.-...++.++...+..|..|..+++.|..+..+
T Consensus 23 IqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 23 VLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555667778888888888888888887766543
No 149
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.27 E-value=1.8e+02 Score=24.91 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587 189 VELESLAVRLEEENEQLLKEKVIRYV 214 (221)
Q Consensus 189 ~eLE~~v~~L~~EN~~L~~~~e~l~~ 214 (221)
..|..+|..|++|+..|+.++++|+.
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888764
No 150
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.05 E-value=1.6e+02 Score=24.56 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027587 190 ELESLAVRLEEENEQLLKE 208 (221)
Q Consensus 190 eLE~~v~~L~~EN~~L~~~ 208 (221)
+||..+..++..|..|+.+
T Consensus 46 ELE~eL~~~Ek~~~~L~~~ 64 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQAD 64 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444333333333333
Done!