BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027590
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 146 bits (369), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 78/88 (88%)
Query: 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL YILDG
Sbjct: 2 STNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61
Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIEKI 166
DN RHGLNRDLSFKAEDR ENIRR+ ++
Sbjct: 62 DNVRHGLNRDLSFKAEDRAENIRRVGEV 89
>pdb|1D6J|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
Kinase From Penicillium Chrysogenum
pdb|1D6J|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
Kinase From Penicillium Chrysogenum
pdb|1M7G|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7H|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
Length = 211
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILD 137
STNI +H +++ + +R +L Q+G IW+TGLS SGKSTLA L Q + R Y LD
Sbjct: 2 STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61
Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIEKI 166
GDN R GLN+DL F DR ENIRRI ++
Sbjct: 62 GDNIRFGLNKDLGFSEADRNENIRRIAEV 90
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
Query: 68 NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALS 123
+N QN + ++TN+ + + V + R Q++ +G C +W+TGLSG+GK+T++ AL
Sbjct: 14 SNNAQNWGMQRATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALE 73
Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKI 166
+ L G Y LDGDN R GLN++L F EDR EN+RRI ++
Sbjct: 74 EYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEV 116
>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|C Chain C, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|D Chain D, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|E Chain E, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|F Chain F, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|G Chain G, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|H Chain H, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
Length = 208
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 61/93 (65%), Gaps = 4/93 (4%)
Query: 78 KSTNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALSQALHWRGKLT 133
++TN+ + + V + R Q++ +G C IW+TGLSG+GK+T++ AL + L G
Sbjct: 5 RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPC 64
Query: 134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIEKI 166
Y LDGDN R GLN++L F EDR EN+RRI ++
Sbjct: 65 YTLDGDNIRQGLNKNLGFSPEDREENVRRIAEV 97
>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
pdb|2OFX|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
Length = 207
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 60/92 (65%), Gaps = 4/92 (4%)
Query: 79 STNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALSQALHWRGKLTY 134
+TN+ + + V + R Q++ +G C +W+TGLSG+GK+T++ AL + L G Y
Sbjct: 5 ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 64
Query: 135 ILDGDNCRHGLNRDLSFKAEDRVENIRRIEKI 166
LDGDN R GLN++L F EDR EN+RRI ++
Sbjct: 65 TLDGDNIRQGLNKNLGFSPEDREENVRRIAEV 96
>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEY|B Chain B, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEZ|A Chain A, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
pdb|2PEZ|B Chain B, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
Length = 179
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 48/66 (72%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160
+GC +W+TGLSG+GK+T++ AL + L G Y LDGDN R GLN++L F EDR EN+
Sbjct: 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV 63
Query: 161 RRIEKI 166
RRI ++
Sbjct: 64 RRIAEV 69
>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|B Chain B, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|C Chain C, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|D Chain D, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
Length = 198
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160
+GC +W+TGLSG+GK+T++ AL + L Y LDGDN RHGLNR+L F DR ENI
Sbjct: 21 RGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENI 80
Query: 161 RRIEKI 166
RRI ++
Sbjct: 81 RRIAEV 86
>pdb|3CR7|A Chain A, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|B Chain B, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|C Chain C, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|D Chain D, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
Length = 197
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 100 QKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
Q+G IW+TGLS SGKSTLA L Q + R Y LDGDN R GLN+DL F DR E
Sbjct: 1 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE 60
Query: 159 NIRRIEKI 166
NIRRI ++
Sbjct: 61 NIRRIAEV 68
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
++G +W+TGL +GKST+A L+ L RG+ +LDGD R L+R L F EDR+ N
Sbjct: 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITN 429
Query: 160 IRRI 163
I R+
Sbjct: 430 ILRV 433
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+KG V+W+TGL GSGK+T+A L+ L G +LDGD R ++ F E+R+ +
Sbjct: 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRH 70
Query: 160 IRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQR 197
++RI I A + + + CS++ +K R +R
Sbjct: 71 LKRIAWI---ARLLARNGVIVICSFVSPYKQARNMVRR 105
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 99 QQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157
+++G ++ TGLSG+GKSTLA AL+ L G+ +LDGD R L+ +L F R
Sbjct: 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRD 425
Query: 158 ENIRRI 163
N+RRI
Sbjct: 426 VNVRRI 431
>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|B Chain B, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|C Chain C, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
Length = 573
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+G I++TG SGK +A AL L+ +G + +L GD RH L+ +L F EDR N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 160 IRRI 163
I+RI
Sbjct: 455 IQRI 458
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
+G I++TG SGK +A AL L+ +G + +L GD RH L+ +L F EDR N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 160 IRRI 163
I+RI
Sbjct: 455 IQRI 458
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWR 129
VI + G SG+GK TL AL+++L+WR
Sbjct: 29 VITVDGPSGAGKGTLCKALAESLNWR 54
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142
+L +K VI + G+ GSGK+T A L++ + RG ++ D R
Sbjct: 93 ELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142
+L +K VI + G+ GSGK+T A L++ + RG ++ D R
Sbjct: 93 ELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160
+ V I G S SGKST+ A+++ L G+ IL G G +DL E+ + I
Sbjct: 33 ENSVTAIVGESASGKSTIIEAMTKTLPPNGR---ILSGRVLYKG--KDLLTMREEELRKI 87
Query: 161 RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQ--GTQRAFTSLHEKGRSRV 210
R E +P Q Q+ ++ + HFK + G + + + L EK ++
Sbjct: 88 RWKEIALVP--QAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKL 137
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli Complexed With Dcmp
Length = 227
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 104 VIWITGLSGSGKSTLACALSQALHW 128
VI I G SG+GK TL A+++AL W
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQW 31
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With Cytidine-Di-
Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 104 VIWITGLSGSGKSTLACALSQALHW 128
VI I G SG+GK TL A+++AL W
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQW 31
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 104 VIWITGLSGSGKSTLACALSQALHW 128
VI I G SG+GK TL A+++AL W
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQW 31
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
+L KNS + QL +K VI I G++G GK+T L+ L G + GD
Sbjct: 83 MLAKKNS---KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139
Query: 142 RHGLNRDLSFKAE 154
R + L AE
Sbjct: 140 RAAASDQLEIWAE 152
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
+L KNS + QL +K VI I G++G GK+T L+ L G + GD
Sbjct: 140 MLAKKNS---KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196
Query: 142 RHGLNRDLSFKAE 154
R + L AE
Sbjct: 197 RAAASDQLEIWAE 209
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
++G G+GK+T+ LS AL RG+ +DGD
Sbjct: 8 VSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG 144
+++K ++ + G+ GSGK+T L++ RG ++ D R G
Sbjct: 96 IKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG 142
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|3BFV|A Chain A, Crystal Structure Of The Chimerical Protein Capab
pdb|3BFV|B Chain B, Crystal Structure Of The Chimerical Protein Capab
Length = 271
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
++ + G+GKST+A L+ A G T I+DGD
Sbjct: 84 SIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120
>pdb|1S0I|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Sialyl-
Lactose (Michaelis Complex)
pdb|1S0J|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Munana
(Michaelis Complex)
Length = 648
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 27/105 (25%)
Query: 112 GSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR----VENIRRIEKIE 167
G G+S C+ AL W GKL N R R L +++ D +E + + ++
Sbjct: 234 GKGRSAFGCSEPVALEWEGKLII-----NTRVDYRRRLVYESSDMGNTWLEAVGTLSRVW 288
Query: 168 MPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLL 212
P+ + Q G+Q +FT++ +G RV+L
Sbjct: 289 GPSPKSNQP-----------------GSQSSFTAVTIEGM-RVML 315
>pdb|1MS5|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
pdb|1MS5|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
Length = 648
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 27/105 (25%)
Query: 112 GSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR----VENIRRIEKIE 167
G G+S C+ AL W GKL N R R L +++ D +E + + ++
Sbjct: 234 GKGRSAFGCSEPVALEWEGKLII-----NTRVDYRRRLVYESSDMGNTWLEAVGTLSRVW 288
Query: 168 MPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLL 212
P+ + Q G+Q +FT++ +G RV+L
Sbjct: 289 GPSPKSNQP-----------------GSQSSFTAVTIEGM-RVML 315
>pdb|1MR5|A Chain A, Orthorhombic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS0|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS0|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS1|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS1|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS3|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS3|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS8|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS8|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS9|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|1MS9|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|2AH2|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With
2,3-Difluorosialic Acid (Covalent Intermediate)
pdb|3B69|A Chain A, T Cruzi Trans-Sialidase Complex With Benzoylated Nana
Derivative
pdb|3OPZ|A Chain A, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|B Chain B, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|C Chain C, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
Length = 648
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 27/105 (25%)
Query: 112 GSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR----VENIRRIEKIE 167
G G+S C+ AL W GKL N R R L +++ D +E + + ++
Sbjct: 234 GKGRSAFGCSEPVALEWEGKLII-----NTRVDYRRRLVYESSDMGNTWLEAVGTLSRVW 288
Query: 168 MPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLL 212
P+ + Q G+Q +FT++ +G RV+L
Sbjct: 289 GPSPKSNQP-----------------GSQSSFTAVTIEGM-RVML 315
>pdb|3PJQ|A Chain A, Trypanosoma Cruzi Trans-Sialidase-Like Inactive Isoform
(Including The Natural Mutation Tyr342his) In Complex
With Lactose
Length = 648
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 27/105 (25%)
Query: 112 GSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR----VENIRRIEKIE 167
G G+S C+ AL W GKL N R R L +++ D +E + + ++
Sbjct: 234 GKGRSAFGCSEPVALEWEGKLII-----NTRVDYRRRLVYESSDMGNTWLEAVGTLSRVW 288
Query: 168 MPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLL 212
P+ + Q G+Q +FT++ +G RV+L
Sbjct: 289 GPSPKSNQP-----------------GSQSSFTAVTIEGM-RVML 315
>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
Stearothermophilus
Length = 201
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWRG 130
V+ I GLS SGK+TLA LSQ L +G
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQG 50
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 102 GCVIWITGLSGSGKSTLAC-----ALSQALH 127
G + +TG+SGSGKSTL AL+Q LH
Sbjct: 348 GTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 378
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 101 KGCVIWITGLSGSGKSTLA 119
+G ++ +TGLSGSGKS+LA
Sbjct: 43 RGKLVVLTGLSGSGKSSLA 61
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 102 GCVIWITGLSGSGKSTLAC-----ALSQALH 127
G + +TG+SGSGKSTL AL+Q LH
Sbjct: 650 GTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 680
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 101 KGCVIWITGLSGSGKSTLA 119
+G ++ +TGLSGSGKS+LA
Sbjct: 43 RGKLVVLTGLSGSGKSSLA 61
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 102 GCVIWITGLSGSGKSTLAC-----ALSQALH 127
G + +TG+SGSGKSTL AL+Q LH
Sbjct: 650 GTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 680
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 101 KGCVIWITGLSGSGKSTLA 119
+G ++ +TGLSGSGKS+LA
Sbjct: 43 RGKLVVLTGLSGSGKSSLA 61
>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 294
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
Length = 297
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 300
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
Length = 297
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 293
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 101 FLVGLQGSGKTTTAAKL--ALYYKGK 124
>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
Length = 295
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 296
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 101 FLVGLQGSGKTTTAAKL--ALYYKGK 124
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 106 WITGLSGSGKSTLACALSQALHWRGK 131
++ GL GSGK+T A L AL+++GK
Sbjct: 102 FLVGLQGSGKTTTAAKL--ALYYKGK 125
>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase (coa
Synthase): (18044849) From Mus Musculus At 1.70 A
Resolution
Length = 281
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143
V+ +TG+SGSGKS++A L + YI+D D+ H
Sbjct: 77 VLGLTGISGSGKSSVAQRL------KNLGAYIIDSDHLGH 110
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
Q LQ ++ TG G GK++++CA + L +GK ++ D
Sbjct: 2 QFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA 47
>pdb|1A7J|A Chain A, Phosphoribulokinase From Rhodobacter Spheroides
Length = 290
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154
+ +K +I +TG SG+G ST+ Q G ++GD H NR KAE
Sbjct: 1 MSKKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD-AFHRFNR-ADMKAE 55
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 6/41 (14%)
Query: 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126
+N++D D + L G + +TG+SGSGKSTL +SQAL
Sbjct: 510 RNNLDNLDVRFPL---GVMTSVTGVSGSGKSTL---VSQAL 544
>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3Q9L|B Chain B, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3R9I|A Chain A, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|B Chain B, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|C Chain C, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|D Chain D, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9J|A Chain A, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
pdb|3R9J|B Chain B, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
Length = 260
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137
++ +G G GK+T + A++ L +GK T ++D
Sbjct: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg-Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
++G G+GK+T+ LS AL G+ +DGD
Sbjct: 8 VSGKGGTGKTTVTANLSVALGEXGRKVLAVDGD 40
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 28.1 bits (61), Expect = 3.5, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 18/83 (21%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160
K ++ ITG+SGSGKS+LA ++ G+ Y+ LS A + N+
Sbjct: 23 KNRLVVITGVSGSGKSSLAM---DTIYAEGQRRYL-----------ESLSTYARQFLGNL 68
Query: 161 RR--IEKIE--MPAVQCCQKEIS 179
++ +++IE PA+ QK +S
Sbjct: 69 KKPDVDEIEGLSPAIAIDQKTVS 91
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
D L ++G VI I G SGSGKSTL L Q + ++DG
Sbjct: 20 DNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDG 64
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
D L ++G VI I G SGSGKSTL L Q + ++DG
Sbjct: 26 DNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDG 70
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
D L ++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 22 DNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 69
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
D L ++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 20 DNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 67
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
D L ++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 26 DNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 73
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141
D L ++G VI I G SGSGKSTL L Q + ++DG +
Sbjct: 26 DNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDL 73
>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
From Archaeoglobus Fulgidus, Northeast Structural
Genomics Target Gr165
Length = 262
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
K D+ +++L + K + +G G GKST+ L+ +GK ILD D
Sbjct: 2 QKRVTDEEIKERLGKIKSRIAVXSGKGGVGKSTVTALLAVHYARQGKKVGILDAD 56
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 105 IWITGLSGSGKSTLACALSQALH 127
I++TG G+GK+TL A ++ L+
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLN 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.131 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,711,593
Number of Sequences: 62578
Number of extensions: 202845
Number of successful extensions: 836
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 73
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)