Query 027590
Match_columns 221
No_of_seqs 256 out of 2550
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 12:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1120 FepC ABC-type cobalami 99.9 4E-26 8.7E-31 194.1 7.5 136 76-219 2-156 (258)
2 COG1126 GlnQ ABC-type polar am 99.9 2.8E-25 6E-30 182.8 6.4 143 76-221 2-156 (240)
3 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 5.9E-24 1.3E-28 180.2 10.5 138 75-220 3-158 (254)
4 COG3839 MalK ABC-type sugar tr 99.9 2.1E-23 4.6E-28 183.5 10.6 142 76-220 3-152 (338)
5 COG3842 PotA ABC-type spermidi 99.9 7.4E-24 1.6E-28 187.4 7.5 143 75-220 4-155 (352)
6 COG3638 ABC-type phosphate/pho 99.9 1.4E-23 3.1E-28 174.6 8.7 142 76-219 3-165 (258)
7 COG1116 TauB ABC-type nitrate/ 99.9 5.6E-23 1.2E-27 172.7 11.1 141 76-220 3-149 (248)
8 COG0410 LivF ABC-type branched 99.9 2.1E-22 4.5E-27 167.3 7.2 144 75-220 2-155 (237)
9 COG1127 Ttg2A ABC-type transpo 99.9 2E-22 4.4E-27 168.1 6.6 145 74-220 6-164 (263)
10 COG1135 AbcC ABC-type metal io 99.9 1.6E-22 3.6E-27 174.0 6.2 141 77-220 2-160 (339)
11 COG1124 DppF ABC-type dipeptid 99.9 4E-22 8.7E-27 166.6 8.3 142 76-219 3-159 (252)
12 COG1125 OpuBA ABC-type proline 99.9 1.4E-21 3E-26 164.5 10.9 139 77-220 2-154 (309)
13 COG1136 SalX ABC-type antimicr 99.9 2.4E-22 5.2E-27 167.9 5.5 141 78-220 3-161 (226)
14 COG1117 PstB ABC-type phosphat 99.9 3.3E-22 7.2E-27 164.4 5.0 143 75-220 6-168 (253)
15 COG2884 FtsE Predicted ATPase 99.9 1.3E-21 2.8E-26 158.3 7.7 140 77-219 2-155 (223)
16 COG1123 ATPase components of v 99.8 1E-21 2.2E-26 181.0 7.5 145 74-220 278-448 (539)
17 COG1118 CysA ABC-type sulfate/ 99.8 7.9E-22 1.7E-26 169.6 6.0 141 77-220 3-156 (345)
18 COG1131 CcmA ABC-type multidru 99.8 5.9E-21 1.3E-25 166.4 9.2 138 76-219 4-154 (293)
19 COG4555 NatA ABC-type Na+ tran 99.8 5.3E-21 1.2E-25 156.1 8.2 138 76-219 1-151 (245)
20 COG4559 ABC-type hemin transpo 99.8 5.4E-21 1.2E-25 157.1 5.6 142 76-219 1-153 (259)
21 cd03259 ABC_Carb_Solutes_like 99.8 1.6E-20 3.4E-25 155.9 7.6 140 78-220 2-149 (213)
22 PRK09536 btuD corrinoid ABC tr 99.8 8.5E-21 1.8E-25 171.8 6.2 141 76-219 3-157 (402)
23 PRK11650 ugpC glycerol-3-phosp 99.8 1.1E-20 2.4E-25 168.9 6.6 142 76-220 3-153 (356)
24 PRK13537 nodulation ABC transp 99.8 3.4E-20 7.3E-25 162.6 9.4 143 75-220 6-157 (306)
25 cd03226 ABC_cobalt_CbiO_domain 99.8 1.6E-20 3.4E-25 155.1 6.7 139 79-220 2-145 (205)
26 PRK09452 potA putrescine/sperm 99.8 1.5E-20 3.1E-25 169.1 6.5 144 74-220 12-163 (375)
27 PRK14250 phosphate ABC transpo 99.8 3.8E-20 8.1E-25 156.7 8.4 142 76-219 3-149 (241)
28 cd03261 ABC_Org_Solvent_Resist 99.8 1.7E-20 3.8E-25 157.9 6.1 140 78-220 2-155 (235)
29 TIGR03265 PhnT2 putative 2-ami 99.8 1.8E-20 3.9E-25 167.3 6.3 142 76-220 4-153 (353)
30 TIGR02314 ABC_MetN D-methionin 99.8 2.3E-20 4.9E-25 166.0 6.7 141 77-220 2-159 (343)
31 PRK11432 fbpC ferric transport 99.8 2E-20 4.4E-25 166.8 6.3 143 75-220 5-155 (351)
32 COG1122 CbiO ABC-type cobalt t 99.8 1.1E-19 2.5E-24 153.5 10.4 142 76-220 3-157 (235)
33 TIGR00960 3a0501s02 Type II (G 99.8 2.8E-20 6.1E-25 154.7 6.6 141 77-220 2-157 (216)
34 cd03224 ABC_TM1139_LivF_branch 99.8 4.1E-20 8.8E-25 154.1 7.3 140 78-219 2-150 (222)
35 cd03269 ABC_putative_ATPase Th 99.8 3.3E-20 7.1E-25 153.7 6.7 139 78-219 2-146 (210)
36 TIGR02673 FtsE cell division A 99.8 4.6E-20 1E-24 153.1 7.2 141 77-220 2-156 (214)
37 PRK10851 sulfate/thiosulfate t 99.8 3.4E-20 7.4E-25 165.5 6.8 141 77-220 3-155 (353)
38 PRK13646 cbiO cobalt transport 99.8 4.4E-20 9.5E-25 160.3 7.2 142 77-220 3-164 (286)
39 cd03266 ABC_NatA_sodium_export 99.8 6.5E-20 1.4E-24 152.6 7.9 141 77-220 2-155 (218)
40 KOG0635 Adenosine 5'-phosphosu 99.8 4.5E-20 9.8E-25 144.2 6.4 111 79-196 8-122 (207)
41 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 4.4E-20 9.4E-25 153.6 6.5 139 78-219 2-158 (218)
42 cd03263 ABC_subfamily_A The AB 99.8 6E-20 1.3E-24 153.0 7.3 139 78-219 2-151 (220)
43 PRK13634 cbiO cobalt transport 99.8 5.6E-20 1.2E-24 159.9 7.3 142 77-220 3-164 (290)
44 COG2274 SunT ABC-type bacterio 99.8 1.2E-19 2.5E-24 173.9 10.1 140 72-220 467-628 (709)
45 cd03265 ABC_DrrA DrrA is the A 99.8 5.7E-20 1.2E-24 153.3 7.0 139 78-219 2-149 (220)
46 TIGR03258 PhnT 2-aminoethylpho 99.8 3.9E-20 8.4E-25 165.6 6.3 142 76-220 5-156 (362)
47 cd03293 ABC_NrtD_SsuB_transpor 99.8 4.9E-20 1.1E-24 153.7 6.4 139 78-220 2-150 (220)
48 cd03296 ABC_CysA_sulfate_impor 99.8 6.3E-20 1.4E-24 155.0 7.2 140 77-219 3-154 (239)
49 PRK13637 cbiO cobalt transport 99.8 4.8E-20 1E-24 160.1 6.5 142 77-220 3-163 (287)
50 PRK11308 dppF dipeptide transp 99.8 5E-20 1.1E-24 162.9 6.7 144 75-220 4-173 (327)
51 COG4152 ABC-type uncharacteriz 99.8 3.5E-20 7.6E-25 155.2 5.3 139 76-217 2-147 (300)
52 COG4604 CeuD ABC-type enteroch 99.8 4.4E-20 9.4E-25 150.4 5.7 141 77-219 2-153 (252)
53 PRK13647 cbiO cobalt transport 99.8 8.4E-20 1.8E-24 157.6 7.8 143 75-220 3-157 (274)
54 cd03235 ABC_Metallic_Cations A 99.8 2.6E-20 5.7E-25 154.6 4.5 137 79-219 2-150 (213)
55 cd03268 ABC_BcrA_bacitracin_re 99.8 8.1E-20 1.8E-24 151.1 7.4 140 78-220 2-145 (208)
56 cd03301 ABC_MalK_N The N-termi 99.8 8.9E-20 1.9E-24 151.3 7.7 140 78-220 2-149 (213)
57 PRK11607 potG putrescine trans 99.8 5.2E-20 1.1E-24 165.6 6.7 144 74-220 17-168 (377)
58 TIGR01288 nodI ATP-binding ABC 99.8 5.6E-20 1.2E-24 160.8 6.7 142 76-220 4-154 (303)
59 PRK13536 nodulation factor exp 99.8 1.3E-19 2.9E-24 161.0 9.1 142 75-219 40-190 (340)
60 TIGR02315 ABC_phnC phosphonate 99.8 6.7E-20 1.5E-24 154.9 6.8 140 77-219 2-163 (243)
61 PRK15079 oligopeptide ABC tran 99.8 7E-20 1.5E-24 162.2 6.8 144 75-220 7-180 (331)
62 PRK13650 cbiO cobalt transport 99.8 1.2E-19 2.5E-24 157.1 7.9 143 75-220 3-159 (279)
63 cd03225 ABC_cobalt_CbiO_domain 99.8 5.8E-20 1.3E-24 152.1 5.8 139 79-220 2-153 (211)
64 COG0529 CysC Adenylylsulfate k 99.8 7.9E-20 1.7E-24 146.2 6.2 111 83-200 4-118 (197)
65 PRK10247 putative ABC transpor 99.8 8.8E-20 1.9E-24 153.0 6.8 144 74-219 5-155 (225)
66 PRK11248 tauB taurine transpor 99.8 9.6E-20 2.1E-24 155.7 7.2 139 77-219 2-146 (255)
67 cd03219 ABC_Mj1267_LivG_branch 99.8 6.4E-20 1.4E-24 154.4 6.0 140 78-220 2-162 (236)
68 PRK13643 cbiO cobalt transport 99.8 8.5E-20 1.8E-24 158.7 6.8 142 77-220 2-163 (288)
69 TIGR03410 urea_trans_UrtE urea 99.8 9.3E-20 2E-24 152.9 6.7 140 78-219 2-149 (230)
70 PRK11000 maltose/maltodextrin 99.8 6.8E-20 1.5E-24 164.5 6.2 142 76-220 3-152 (369)
71 PRK13651 cobalt transporter AT 99.8 8.8E-20 1.9E-24 159.9 6.7 142 77-220 3-184 (305)
72 TIGR02868 CydC thiol reductant 99.8 2.8E-19 6.1E-24 167.0 10.5 142 76-219 334-488 (529)
73 PRK11153 metN DL-methionine tr 99.8 8.2E-20 1.8E-24 162.5 6.4 141 77-220 2-159 (343)
74 PRK10908 cell division protein 99.8 1E-19 2.2E-24 152.0 6.6 140 77-219 2-155 (222)
75 PRK13540 cytochrome c biogenes 99.8 1.1E-19 2.3E-24 149.8 6.3 140 77-220 2-146 (200)
76 cd03260 ABC_PstB_phosphate_tra 99.8 1.2E-19 2.5E-24 152.1 6.6 139 78-219 2-159 (227)
77 PRK13631 cbiO cobalt transport 99.8 1.2E-19 2.5E-24 160.1 7.0 144 75-220 20-195 (320)
78 PRK11614 livF leucine/isoleuci 99.8 1.6E-19 3.4E-24 152.3 7.3 142 76-219 5-155 (237)
79 PRK11247 ssuB aliphatic sulfon 99.8 1.6E-19 3.4E-24 154.7 7.3 140 74-219 10-151 (257)
80 PRK13635 cbiO cobalt transport 99.8 1.9E-19 4E-24 155.9 7.8 143 75-220 4-159 (279)
81 cd03262 ABC_HisP_GlnQ_permease 99.8 1.2E-19 2.7E-24 150.3 6.4 140 78-220 2-154 (213)
82 cd03257 ABC_NikE_OppD_transpor 99.8 2.1E-19 4.6E-24 150.2 7.9 141 77-219 2-163 (228)
83 KOG0058 Peptide exporter, ABC 99.8 2.2E-19 4.7E-24 168.6 8.7 147 72-220 461-623 (716)
84 PRK09493 glnQ glutamine ABC tr 99.8 1.4E-19 3E-24 152.9 6.7 140 77-219 2-154 (240)
85 cd03295 ABC_OpuCA_Osmoprotecti 99.8 1.7E-19 3.7E-24 152.6 7.2 141 78-220 2-154 (242)
86 cd03218 ABC_YhbG The ABC trans 99.8 1.7E-19 3.7E-24 151.4 7.1 139 78-219 2-151 (232)
87 PRK15112 antimicrobial peptide 99.8 2.5E-19 5.4E-24 154.0 8.1 145 74-220 2-168 (267)
88 PRK13641 cbiO cobalt transport 99.8 2.1E-19 4.7E-24 156.0 7.7 143 76-220 2-164 (287)
89 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 1.5E-19 3.2E-24 152.5 6.5 141 77-220 2-151 (236)
90 PRK11629 lolD lipoprotein tran 99.8 3.6E-19 7.9E-24 149.8 8.9 141 76-219 5-163 (233)
91 cd03230 ABC_DR_subfamily_A Thi 99.8 3.4E-19 7.3E-24 143.7 8.3 108 78-220 2-114 (173)
92 COG4172 ABC-type uncharacteriz 99.8 2.6E-19 5.7E-24 158.9 8.1 123 88-220 299-445 (534)
93 cd03258 ABC_MetN_methionine_tr 99.8 1.2E-19 2.6E-24 152.5 5.7 140 77-219 2-158 (233)
94 COG0411 LivG ABC-type branched 99.8 6E-20 1.3E-24 153.7 3.6 93 75-169 3-102 (250)
95 TIGR00972 3a0107s01c2 phosphat 99.8 1.3E-19 2.9E-24 153.7 5.7 141 77-219 2-162 (247)
96 cd03256 ABC_PhnC_transporter A 99.8 1.2E-19 2.6E-24 153.0 5.4 139 78-219 2-162 (241)
97 TIGR03608 L_ocin_972_ABC putat 99.8 1.9E-19 4.1E-24 148.4 6.4 138 80-220 2-153 (206)
98 TIGR03522 GldA_ABC_ATP gliding 99.8 1.6E-19 3.5E-24 157.8 6.4 140 77-220 3-152 (301)
99 PRK11831 putative ABC transpor 99.8 1.6E-19 3.5E-24 155.4 6.2 143 74-219 5-161 (269)
100 TIGR02211 LolD_lipo_ex lipopro 99.8 2.1E-19 4.6E-24 149.8 6.6 141 77-220 2-160 (221)
101 PRK14242 phosphate transporter 99.8 1.9E-19 4.1E-24 153.2 6.4 144 74-219 4-167 (253)
102 PRK13638 cbiO cobalt transport 99.8 3.9E-19 8.5E-24 153.0 8.2 140 77-219 2-154 (271)
103 PRK10253 iron-enterobactin tra 99.8 1.4E-19 3E-24 155.3 5.4 143 74-219 5-161 (265)
104 PRK13633 cobalt transporter AT 99.8 3.1E-19 6.7E-24 154.5 7.5 144 74-220 2-163 (280)
105 cd03292 ABC_FtsE_transporter F 99.8 2.8E-19 6E-24 148.3 6.9 139 78-219 2-154 (214)
106 TIGR01189 ccmA heme ABC export 99.8 2.4E-19 5.1E-24 147.4 6.4 140 78-220 2-146 (198)
107 PRK13636 cbiO cobalt transport 99.8 3.1E-19 6.7E-24 154.7 7.4 142 75-219 4-159 (283)
108 PRK11264 putative amino-acid A 99.8 1.7E-19 3.7E-24 153.1 5.6 141 76-219 3-162 (250)
109 PRK13632 cbiO cobalt transport 99.8 3.2E-19 7E-24 153.6 7.3 142 75-219 6-160 (271)
110 PRK14267 phosphate ABC transpo 99.8 2.3E-19 5E-24 152.7 6.3 144 75-220 3-168 (253)
111 PRK11701 phnK phosphonate C-P 99.8 5E-19 1.1E-23 151.2 8.4 145 74-220 4-170 (258)
112 cd03264 ABC_drug_resistance_li 99.8 2.6E-19 5.7E-24 148.3 6.5 139 78-220 2-149 (211)
113 cd03228 ABCC_MRP_Like The MRP 99.8 8.3E-19 1.8E-23 141.2 9.2 77 78-156 2-85 (171)
114 PRK11022 dppD dipeptide transp 99.8 5.2E-19 1.1E-23 156.3 8.8 143 76-220 3-172 (326)
115 PRK10584 putative ABC transpor 99.8 2.4E-19 5.3E-24 150.2 6.2 144 74-220 4-165 (228)
116 PRK10895 lipopolysaccharide AB 99.8 4.1E-19 8.9E-24 150.1 7.6 142 76-220 3-156 (241)
117 COG4619 ABC-type uncharacteriz 99.8 4.9E-20 1.1E-24 146.8 1.8 132 78-215 5-147 (223)
118 PRK13649 cbiO cobalt transport 99.8 2.7E-19 5.9E-24 154.6 6.6 142 77-220 3-164 (280)
119 PRK10619 histidine/lysine/argi 99.8 2E-19 4.3E-24 153.6 5.6 145 74-220 3-171 (257)
120 PRK10575 iron-hydroxamate tran 99.8 1.8E-19 3.9E-24 154.7 5.3 142 75-219 10-165 (265)
121 PRK14259 phosphate ABC transpo 99.8 4.6E-19 1E-23 152.6 7.9 144 74-219 11-172 (269)
122 TIGR03740 galliderm_ABC gallid 99.8 4.5E-19 9.7E-24 148.2 7.6 140 78-220 2-143 (223)
123 cd03229 ABC_Class3 This class 99.8 4.4E-19 9.5E-24 143.7 7.3 109 78-219 2-118 (178)
124 PRK13538 cytochrome c biogenes 99.8 3.3E-19 7.2E-24 147.3 6.5 140 77-219 2-147 (204)
125 PRK14273 phosphate ABC transpo 99.8 3.7E-19 8.1E-24 151.6 6.9 144 74-219 5-168 (254)
126 KOG0057 Mitochondrial Fe/S clu 99.8 5.2E-19 1.1E-23 161.7 8.2 139 75-216 350-502 (591)
127 PRK14274 phosphate ABC transpo 99.8 3.1E-19 6.8E-24 152.5 6.4 145 74-220 10-174 (259)
128 TIGR03005 ectoine_ehuA ectoine 99.8 3.2E-19 7E-24 151.8 6.4 139 78-219 2-164 (252)
129 PRK14247 phosphate ABC transpo 99.8 2.3E-19 5.1E-24 152.4 5.5 142 76-219 3-164 (250)
130 PRK13644 cbiO cobalt transport 99.8 4.3E-19 9.3E-24 153.2 7.2 140 77-219 2-154 (274)
131 PRK15439 autoinducer 2 ABC tra 99.8 3.2E-19 7E-24 166.2 6.9 144 74-220 9-159 (510)
132 cd03246 ABCC_Protease_Secretio 99.8 8.3E-19 1.8E-23 141.4 8.4 77 78-156 2-85 (173)
133 cd03231 ABC_CcmA_heme_exporter 99.8 4.2E-19 9E-24 146.5 6.7 138 78-220 2-144 (201)
134 PRK14235 phosphate transporter 99.8 2.4E-19 5.2E-24 154.1 5.5 144 74-219 17-181 (267)
135 PRK11124 artP arginine transpo 99.8 3.1E-19 6.8E-24 150.9 6.1 140 77-220 3-160 (242)
136 TIGR02323 CP_lyasePhnK phospho 99.8 9.4E-19 2E-23 148.9 9.0 142 76-219 3-166 (253)
137 PRK13645 cbiO cobalt transport 99.8 6.4E-19 1.4E-23 153.1 8.1 144 75-220 5-169 (289)
138 COG1137 YhbG ABC-type (unclass 99.8 2.1E-19 4.5E-24 146.7 4.7 142 76-220 4-158 (243)
139 PRK14256 phosphate ABC transpo 99.8 3.6E-19 7.8E-24 151.5 6.3 144 74-219 2-166 (252)
140 PRK13652 cbiO cobalt transport 99.8 3.5E-19 7.6E-24 153.9 6.3 142 76-220 3-156 (277)
141 PRK13548 hmuV hemin importer A 99.8 2.9E-19 6.3E-24 152.9 5.7 139 76-217 2-150 (258)
142 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 1.2E-18 2.6E-23 167.5 10.4 141 75-219 450-606 (686)
143 PRK14269 phosphate ABC transpo 99.8 4.3E-19 9.2E-24 150.6 6.5 141 77-219 3-160 (246)
144 PRK10744 pstB phosphate transp 99.8 4.1E-19 8.9E-24 152.0 6.4 145 74-220 11-175 (260)
145 PRK13539 cytochrome c biogenes 99.8 3.7E-19 7.9E-24 147.4 5.9 142 76-220 2-146 (207)
146 cd03216 ABC_Carb_Monos_I This 99.8 1.3E-18 2.9E-23 139.2 8.9 85 78-164 2-92 (163)
147 TIGR02982 heterocyst_DevA ABC 99.8 5.8E-19 1.3E-23 147.3 7.1 141 77-220 2-160 (220)
148 TIGR02769 nickel_nikE nickel i 99.8 6.9E-19 1.5E-23 151.0 7.7 142 76-219 2-168 (265)
149 cd03247 ABCC_cytochrome_bd The 99.8 6.9E-19 1.5E-23 142.4 7.2 110 78-220 2-117 (178)
150 PRK14268 phosphate ABC transpo 99.8 4.4E-19 9.5E-24 151.6 6.1 143 75-219 11-172 (258)
151 PRK14248 phosphate ABC transpo 99.8 6.8E-19 1.5E-23 151.2 7.2 145 74-220 19-183 (268)
152 PRK14270 phosphate ABC transpo 99.8 5.4E-19 1.2E-23 150.3 6.3 144 74-219 2-165 (251)
153 TIGR01188 drrA daunorubicin re 99.8 2.7E-19 5.8E-24 156.5 4.5 132 85-220 2-143 (302)
154 TIGR03411 urea_trans_UrtD urea 99.8 5.6E-19 1.2E-23 149.3 6.4 141 76-219 2-161 (242)
155 PRK09473 oppD oligopeptide tra 99.8 1.1E-18 2.4E-23 154.5 8.5 145 74-220 10-180 (330)
156 PRK14262 phosphate ABC transpo 99.8 8.2E-19 1.8E-23 149.0 7.2 143 76-220 3-165 (250)
157 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 2E-18 4.3E-23 166.5 10.8 143 75-219 476-633 (710)
158 PRK14241 phosphate transporter 99.8 6.3E-19 1.4E-23 150.6 6.5 143 76-220 4-167 (258)
159 TIGR01193 bacteriocin_ABC ABC- 99.8 2.1E-18 4.6E-23 166.3 10.9 144 75-220 472-630 (708)
160 PRK13642 cbiO cobalt transport 99.8 1.1E-18 2.3E-23 150.9 7.9 142 76-220 4-159 (277)
161 PRK13543 cytochrome c biogenes 99.8 6.2E-19 1.3E-23 146.8 6.2 143 75-220 10-156 (214)
162 PRK09984 phosphonate/organopho 99.8 6.6E-19 1.4E-23 150.8 6.5 143 74-219 2-170 (262)
163 cd03254 ABCC_Glucan_exporter_l 99.8 3E-18 6.4E-23 143.6 10.3 140 77-220 3-158 (229)
164 PRK11300 livG leucine/isoleuci 99.8 8.9E-19 1.9E-23 149.1 7.1 143 75-220 4-172 (255)
165 cd03232 ABC_PDR_domain2 The pl 99.8 8.6E-19 1.9E-23 143.7 6.8 116 76-219 3-126 (192)
166 PRK14237 phosphate transporter 99.8 6.6E-19 1.4E-23 151.4 6.3 144 74-219 18-181 (267)
167 PRK14251 phosphate ABC transpo 99.8 9.8E-19 2.1E-23 148.6 7.2 144 75-220 3-166 (251)
168 cd03252 ABCC_Hemolysin The ABC 99.8 1.9E-18 4.1E-23 145.6 8.9 139 78-219 2-156 (237)
169 PRK15093 antimicrobial peptide 99.8 8.9E-19 1.9E-23 155.1 7.1 142 76-219 3-176 (330)
170 PRK14249 phosphate ABC transpo 99.8 9.5E-19 2.1E-23 148.8 7.0 145 74-220 2-166 (251)
171 PRK11231 fecE iron-dicitrate t 99.8 2.2E-18 4.9E-23 146.9 9.2 141 77-220 3-157 (255)
172 cd03248 ABCC_TAP TAP, the Tran 99.8 1.9E-18 4.1E-23 144.7 8.6 144 74-219 9-168 (226)
173 PRK09700 D-allose transporter 99.8 6.7E-19 1.4E-23 163.9 6.3 143 75-220 4-164 (510)
174 PRK11174 cysteine/glutathione 99.8 1.9E-18 4E-23 163.3 9.3 142 76-219 349-503 (588)
175 PRK13640 cbiO cobalt transport 99.8 1.4E-18 3E-23 150.6 7.6 142 76-220 5-162 (282)
176 TIGR01186 proV glycine betaine 99.8 3.9E-19 8.4E-24 159.1 4.3 133 85-220 2-148 (363)
177 PRK14254 phosphate ABC transpo 99.8 1.2E-18 2.7E-23 151.2 7.2 144 73-219 36-198 (285)
178 PRK13648 cbiO cobalt transport 99.8 1.3E-18 2.8E-23 149.7 7.2 143 74-219 5-160 (269)
179 PRK14240 phosphate transporter 99.8 9.3E-19 2E-23 148.7 6.3 142 76-219 3-164 (250)
180 PRK13639 cbiO cobalt transport 99.8 1.1E-18 2.5E-23 150.6 6.8 140 77-219 2-155 (275)
181 PRK14238 phosphate transporter 99.8 1.3E-18 2.7E-23 150.0 7.1 143 75-219 23-185 (271)
182 PRK10762 D-ribose transporter 99.8 9.3E-19 2E-23 162.7 6.8 143 75-220 3-160 (501)
183 COG0444 DppD ABC-type dipeptid 99.8 1.7E-18 3.8E-23 150.2 7.8 140 76-219 1-171 (316)
184 COG3840 ThiQ ABC-type thiamine 99.8 5.5E-18 1.2E-22 136.6 10.1 129 77-219 2-147 (231)
185 TIGR01166 cbiO cobalt transpor 99.8 7.3E-19 1.6E-23 143.5 5.2 132 86-220 2-146 (190)
186 PRK11176 lipid transporter ATP 99.8 3.1E-18 6.7E-23 161.6 10.1 142 76-219 341-498 (582)
187 cd03245 ABCC_bacteriocin_expor 99.8 3.5E-18 7.5E-23 142.4 9.2 138 77-219 3-158 (220)
188 cd03253 ABCC_ATM1_transporter 99.8 1.5E-18 3.3E-23 146.0 7.1 140 78-220 2-156 (236)
189 PRK14261 phosphate ABC transpo 99.8 1.8E-18 3.9E-23 147.3 7.5 144 74-219 4-167 (253)
190 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 6.3E-18 1.4E-22 142.5 10.7 138 78-219 2-157 (238)
191 PRK14271 phosphate ABC transpo 99.7 1.1E-18 2.4E-23 150.9 6.0 145 74-220 19-182 (276)
192 TIGR01978 sufC FeS assembly AT 99.7 9.5E-19 2.1E-23 147.7 5.5 78 78-157 2-87 (243)
193 PRK14239 phosphate transporter 99.7 1.5E-18 3.2E-23 147.5 6.7 143 75-219 4-166 (252)
194 COG1132 MdlB ABC-type multidru 99.7 3E-18 6.5E-23 161.4 9.4 142 76-219 328-483 (567)
195 TIGR00968 3a0106s01 sulfate AB 99.7 2E-18 4.3E-23 145.8 7.4 140 78-220 2-149 (237)
196 PRK10261 glutathione transport 99.7 1.5E-18 3.2E-23 165.4 7.2 143 75-219 312-481 (623)
197 TIGR03873 F420-0_ABC_ATP propo 99.7 9.2E-19 2E-23 149.4 5.2 140 77-219 2-155 (256)
198 PRK14275 phosphate ABC transpo 99.7 1.4E-18 3.1E-23 150.9 6.5 145 73-219 36-200 (286)
199 cd03214 ABC_Iron-Siderophores_ 99.7 1.9E-18 4.1E-23 140.2 6.7 110 79-220 2-116 (180)
200 PRK13541 cytochrome c biogenes 99.7 1.7E-18 3.6E-23 142.1 6.4 138 77-219 2-141 (195)
201 COG4525 TauB ABC-type taurine 99.7 1.6E-18 3.4E-23 141.2 6.2 139 77-220 4-151 (259)
202 PRK13549 xylose transporter AT 99.7 1.1E-18 2.4E-23 162.4 6.0 142 75-219 4-161 (506)
203 cd03298 ABC_ThiQ_thiamine_tran 99.7 2E-18 4.4E-23 143.0 7.0 137 78-219 2-146 (211)
204 TIGR03375 type_I_sec_LssB type 99.7 6.9E-18 1.5E-22 162.4 11.6 143 75-219 462-619 (694)
205 cd03251 ABCC_MsbA MsbA is an e 99.7 1.9E-18 4.1E-23 145.3 6.8 140 78-219 2-156 (234)
206 PRK13547 hmuV hemin importer A 99.7 1.1E-18 2.4E-23 150.7 5.4 138 77-217 2-161 (272)
207 TIGR00958 3a01208 Conjugate Tr 99.7 3.9E-18 8.6E-23 164.6 9.9 143 75-219 477-635 (711)
208 PRK14263 phosphate ABC transpo 99.7 2.2E-18 4.8E-23 147.8 7.2 144 74-219 6-167 (261)
209 PRK14243 phosphate transporter 99.7 2E-18 4.3E-23 148.2 6.9 142 76-219 10-169 (264)
210 PRK14255 phosphate ABC transpo 99.7 1.8E-18 4E-23 147.1 6.6 144 75-220 4-167 (252)
211 PRK11160 cysteine/glutathione 99.7 6.3E-18 1.4E-22 159.6 10.9 143 75-219 337-493 (574)
212 PRK15056 manganese/iron transp 99.7 1.3E-18 2.9E-23 149.9 5.8 141 76-219 6-160 (272)
213 TIGR01277 thiQ thiamine ABC tr 99.7 2E-18 4.4E-23 143.4 6.6 138 78-220 2-147 (213)
214 cd03289 ABCC_CFTR2 The CFTR su 99.7 3.8E-18 8.2E-23 147.6 8.5 136 77-219 3-156 (275)
215 PRK14265 phosphate ABC transpo 99.7 2E-18 4.4E-23 149.0 6.7 143 76-220 20-180 (274)
216 cd03223 ABCD_peroxisomal_ALDP 99.7 3E-18 6.4E-23 137.5 7.2 107 78-220 2-110 (166)
217 cd03369 ABCC_NFT1 Domain 2 of 99.7 2.1E-18 4.5E-23 142.7 6.4 131 76-219 6-143 (207)
218 PRK14245 phosphate ABC transpo 99.7 1.8E-18 3.9E-23 147.0 6.2 143 76-220 3-165 (250)
219 cd03233 ABC_PDR_domain1 The pl 99.7 2.2E-18 4.7E-23 142.4 6.5 122 76-219 3-136 (202)
220 PRK10070 glycine betaine trans 99.7 1.4E-18 3E-23 157.3 5.6 140 78-220 30-183 (400)
221 cd03217 ABC_FeS_Assembly ABC-t 99.7 5.1E-18 1.1E-22 139.9 8.5 112 78-219 2-122 (200)
222 PRK09544 znuC high-affinity zi 99.7 5.8E-18 1.3E-22 144.5 9.0 132 75-219 3-138 (251)
223 PRK14272 phosphate ABC transpo 99.7 1.7E-18 3.7E-23 147.1 5.7 143 76-220 4-167 (252)
224 COG1119 ModF ABC-type molybden 99.7 1.3E-18 2.8E-23 145.9 4.7 140 72-219 27-189 (257)
225 cd03300 ABC_PotA_N PotA is an 99.7 2.1E-18 4.6E-23 145.1 6.1 140 78-220 2-149 (232)
226 PRK14236 phosphate transporter 99.7 3.2E-18 7E-23 147.5 7.3 144 75-220 24-187 (272)
227 PRK14260 phosphate ABC transpo 99.7 2.4E-18 5.2E-23 147.1 6.5 143 75-219 6-168 (259)
228 PRK10771 thiQ thiamine transpo 99.7 3.8E-18 8.2E-23 143.5 7.5 138 77-219 2-147 (232)
229 cd03244 ABCC_MRP_domain2 Domai 99.7 3.8E-18 8.3E-23 142.2 7.4 138 77-220 3-158 (221)
230 PRK11288 araG L-arabinose tran 99.7 2E-18 4.3E-23 160.5 6.1 143 75-220 3-159 (501)
231 cd03215 ABC_Carb_Monos_II This 99.7 4.9E-18 1.1E-22 138.0 7.6 75 76-156 4-84 (182)
232 cd03294 ABC_Pro_Gly_Bertaine T 99.7 1E-18 2.2E-23 150.5 3.6 139 78-219 26-178 (269)
233 TIGR02324 CP_lyasePhnL phospho 99.7 4.9E-18 1.1E-22 141.9 7.7 140 77-219 2-167 (224)
234 PRK14266 phosphate ABC transpo 99.7 3.7E-18 7.9E-23 145.0 7.0 142 77-220 4-165 (250)
235 cd03213 ABCG_EPDR ABCG transpo 99.7 3.5E-18 7.7E-23 140.3 6.6 115 77-219 4-129 (194)
236 PRK15134 microcin C ABC transp 99.7 2.2E-18 4.9E-23 161.1 6.1 142 76-219 275-443 (529)
237 PRK10790 putative multidrug tr 99.7 5.8E-18 1.3E-22 160.1 9.0 140 76-219 340-494 (592)
238 PRK14264 phosphate ABC transpo 99.7 4.7E-18 1E-22 148.9 7.5 82 74-157 43-136 (305)
239 PRK10419 nikE nickel transport 99.7 3.3E-18 7.2E-23 147.2 6.4 143 76-220 3-170 (268)
240 COG4608 AppF ABC-type oligopep 99.7 9.3E-18 2E-22 142.8 8.9 101 89-220 26-128 (268)
241 cd03288 ABCC_SUR2 The SUR doma 99.7 1E-17 2.2E-22 143.2 9.2 143 71-219 14-174 (257)
242 TIGR02857 CydD thiol reductant 99.7 2.4E-18 5.2E-23 160.7 5.7 142 76-219 320-476 (529)
243 PRK14253 phosphate ABC transpo 99.7 4.5E-18 9.7E-23 144.4 6.7 142 76-219 3-163 (249)
244 PRK14252 phosphate ABC transpo 99.7 5.6E-18 1.2E-22 145.3 7.4 145 74-220 14-180 (265)
245 cd03250 ABCC_MRP_domain1 Domai 99.7 5.4E-18 1.2E-22 139.9 6.9 132 78-220 2-146 (204)
246 PRK10938 putative molybdenum t 99.7 4.6E-18 1E-22 157.5 7.2 138 76-220 3-154 (490)
247 TIGR02633 xylG D-xylose ABC tr 99.7 3.3E-18 7.1E-23 158.9 5.9 143 76-220 1-160 (500)
248 PRK10418 nikD nickel transport 99.7 4.9E-18 1.1E-22 144.8 6.6 138 76-219 4-158 (254)
249 PRK10982 galactose/methyl gala 99.7 2.7E-18 6E-23 159.1 5.3 138 80-220 2-153 (491)
250 PRK11144 modC molybdate transp 99.7 4.2E-18 9.1E-23 152.0 6.3 133 81-220 5-147 (352)
251 COG4107 PhnK ABC-type phosphon 99.7 9.9E-19 2.1E-23 140.3 2.0 144 74-217 4-167 (258)
252 COG1123 ATPase components of v 99.7 7E-18 1.5E-22 155.8 7.7 144 75-220 4-173 (539)
253 PRK14244 phosphate ABC transpo 99.7 4.6E-18 9.9E-23 144.6 5.8 141 77-219 6-167 (251)
254 COG1129 MglA ABC-type sugar tr 99.7 1.7E-17 3.7E-22 152.2 9.9 137 74-218 6-162 (500)
255 TIGR02203 MsbA_lipidA lipid A 99.7 1.9E-17 4.2E-22 155.7 10.4 142 76-219 330-487 (571)
256 PRK09580 sufC cysteine desulfu 99.7 1E-17 2.2E-22 142.0 7.6 79 77-157 2-88 (248)
257 cd03234 ABCG_White The White s 99.7 1.5E-17 3.3E-22 139.3 8.6 141 76-219 3-161 (226)
258 KOG0056 Heavy metal exporter H 99.7 2.9E-18 6.2E-23 155.3 4.3 141 74-216 535-689 (790)
259 KOG0055 Multidrug/pheromone ex 99.7 1.7E-17 3.7E-22 163.5 10.0 147 69-220 343-508 (1228)
260 PRK14257 phosphate ABC transpo 99.7 7.7E-18 1.7E-22 149.1 6.8 144 74-219 78-243 (329)
261 PRK14258 phosphate ABC transpo 99.7 6.9E-18 1.5E-22 144.5 6.3 143 75-219 6-168 (261)
262 PRK10261 glutathione transport 99.7 7.5E-18 1.6E-22 160.5 7.2 148 71-220 7-187 (623)
263 PRK13657 cyclic beta-1,2-gluca 99.7 2.1E-17 4.5E-22 156.3 9.9 143 75-219 333-489 (588)
264 cd03299 ABC_ModC_like Archeal 99.7 7.4E-18 1.6E-22 142.2 6.1 138 78-219 2-147 (235)
265 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 2.3E-17 4.9E-22 129.5 8.4 78 78-164 2-80 (144)
266 PTZ00265 multidrug resistance 99.7 2.2E-17 4.7E-22 169.4 10.2 143 75-220 1164-1377(1466)
267 TIGR02142 modC_ABC molybdenum 99.7 7.2E-18 1.6E-22 150.6 5.8 135 81-220 4-150 (354)
268 PRK15134 microcin C ABC transp 99.7 1.1E-17 2.4E-22 156.5 6.9 144 75-220 4-175 (529)
269 COG3845 ABC-type uncharacteriz 99.7 3.6E-17 7.8E-22 148.2 9.7 96 75-172 3-105 (501)
270 cd03297 ABC_ModC_molybdenum_tr 99.7 8.9E-18 1.9E-22 139.5 5.0 134 80-219 4-149 (214)
271 PRK10938 putative molybdenum t 99.7 1.6E-17 3.5E-22 153.9 7.2 144 74-219 258-419 (490)
272 TIGR03415 ABC_choXWV_ATP choli 99.7 4.7E-18 1E-22 153.0 3.5 135 83-220 31-183 (382)
273 PRK14246 phosphate ABC transpo 99.7 1.3E-17 2.7E-22 142.8 5.9 147 74-220 8-172 (257)
274 cd03290 ABCC_SUR1_N The SUR do 99.7 2.1E-17 4.6E-22 137.6 7.1 139 79-220 3-159 (218)
275 TIGR01846 type_I_sec_HlyB type 99.7 5.6E-17 1.2E-21 156.2 10.9 143 75-219 454-611 (694)
276 CHL00131 ycf16 sulfate ABC tra 99.7 1.6E-17 3.6E-22 141.1 6.4 80 75-156 6-93 (252)
277 TIGR02204 MsbA_rel ABC transpo 99.7 4.4E-17 9.5E-22 153.5 9.9 143 75-219 336-494 (576)
278 PRK10789 putative multidrug tr 99.7 5.4E-17 1.2E-21 153.1 10.1 143 76-220 313-470 (569)
279 PRK11147 ABC transporter ATPas 99.7 2.9E-17 6.2E-22 156.8 8.0 137 75-220 318-459 (635)
280 PRK10522 multidrug transporter 99.7 9.7E-17 2.1E-21 150.7 11.4 139 76-220 322-468 (547)
281 COG4618 ArpD ABC-type protease 99.7 8.7E-18 1.9E-22 152.6 3.6 148 67-219 325-490 (580)
282 TIGR01194 cyc_pep_trnsptr cycl 99.7 1.2E-16 2.7E-21 150.3 11.3 86 76-163 337-432 (555)
283 TIGR01842 type_I_sec_PrtD type 99.7 8.3E-17 1.8E-21 151.0 9.7 143 75-219 315-472 (544)
284 cd03267 ABC_NatA_like Similar 99.7 2.5E-17 5.4E-22 139.1 5.5 132 84-219 29-171 (236)
285 PRK09700 D-allose transporter 99.7 1.2E-17 2.7E-22 155.4 4.0 140 76-219 265-427 (510)
286 COG4598 HisP ABC-type histidin 99.7 1.1E-16 2.3E-21 129.1 8.8 135 75-220 5-171 (256)
287 PRK15064 ABC transporter ATP-b 99.7 4E-17 8.7E-22 152.7 7.1 136 75-220 318-457 (530)
288 COG4181 Predicted ABC-type tra 99.7 6.9E-17 1.5E-21 129.2 7.3 68 87-156 21-97 (228)
289 PRK15064 ABC transporter ATP-b 99.7 3.1E-17 6.6E-22 153.5 6.2 71 77-156 2-73 (530)
290 PRK13549 xylose transporter AT 99.7 1.4E-17 3.1E-22 154.9 3.9 143 75-219 258-423 (506)
291 COG4988 CydD ABC-type transpor 99.7 6.6E-17 1.4E-21 149.2 8.2 141 77-219 321-474 (559)
292 TIGR03269 met_CoM_red_A2 methy 99.7 2.6E-17 5.6E-22 153.6 5.3 140 78-220 2-187 (520)
293 TIGR03269 met_CoM_red_A2 methy 99.7 2.7E-17 5.8E-22 153.6 5.3 143 75-219 278-445 (520)
294 TIGR01192 chvA glucan exporter 99.7 2.3E-17 5E-22 156.1 4.6 142 76-219 334-489 (585)
295 PLN03130 ABC transporter C fam 99.7 1.2E-16 2.6E-21 165.3 10.2 144 75-220 1236-1393(1622)
296 PF00005 ABC_tran: ABC transpo 99.7 8E-18 1.7E-22 129.8 1.0 120 92-219 1-126 (137)
297 TIGR02633 xylG D-xylose ABC tr 99.7 2E-17 4.3E-22 153.7 3.7 142 76-219 257-421 (500)
298 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 6.3E-17 1.4E-21 152.1 7.0 137 75-220 321-462 (552)
299 cd03222 ABC_RNaseL_inhibitor T 99.7 1.2E-16 2.5E-21 129.9 7.5 66 80-156 4-70 (177)
300 PRK11819 putative ABC transpor 99.7 9.3E-17 2E-21 151.2 7.5 137 75-220 323-464 (556)
301 KOG0055 Multidrug/pheromone ex 99.7 5.9E-17 1.3E-21 159.8 6.0 147 72-220 983-1145(1228)
302 PLN03232 ABC transporter C fam 99.7 1.5E-16 3.2E-21 164.0 9.0 143 75-219 1233-1389(1495)
303 COG4167 SapF ABC-type antimicr 99.7 3.1E-17 6.7E-22 132.6 3.2 69 88-158 25-98 (267)
304 PRK03695 vitamin B12-transport 99.7 3.6E-17 7.9E-22 139.1 3.6 125 91-218 11-143 (248)
305 PTZ00243 ABC transporter; Prov 99.7 2.2E-16 4.8E-21 162.9 9.9 141 76-218 1308-1462(1560)
306 COG4674 Uncharacterized ABC-ty 99.7 8E-17 1.7E-21 131.2 5.3 93 75-169 4-104 (249)
307 cd00267 ABC_ATPase ABC (ATP-bi 99.7 3.1E-16 6.8E-21 124.2 8.4 82 79-162 2-88 (157)
308 TIGR01184 ntrCD nitrate transp 99.7 7E-17 1.5E-21 135.9 4.8 124 92-219 1-132 (230)
309 TIGR02770 nickel_nikD nickel i 99.7 1.9E-16 4.2E-21 133.0 7.2 127 91-220 1-144 (230)
310 PRK10636 putative ABC transpor 99.7 1.6E-16 3.4E-21 151.8 7.4 134 75-219 311-448 (638)
311 PRK11819 putative ABC transpor 99.6 8.6E-17 1.9E-21 151.4 5.1 73 75-156 5-79 (556)
312 COG4175 ProV ABC-type proline/ 99.6 4.8E-16 1E-20 134.6 9.2 130 87-219 39-182 (386)
313 PTZ00265 multidrug resistance 99.6 4.2E-16 9.1E-21 160.0 10.4 94 76-171 382-484 (1466)
314 TIGR00957 MRP_assoc_pro multi 99.6 5.2E-16 1.1E-20 160.1 10.3 143 75-219 1283-1439(1522)
315 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 2.3E-16 5E-21 132.3 6.4 137 77-220 23-161 (224)
316 COG1134 TagH ABC-type polysacc 99.6 3.8E-16 8.2E-21 131.0 7.5 128 86-220 37-166 (249)
317 PLN03211 ABC transporter G-25; 99.6 2.8E-16 6.1E-21 150.5 7.7 77 79-157 71-150 (659)
318 cd03291 ABCC_CFTR1 The CFTR su 99.6 4.6E-16 9.9E-21 135.1 7.1 135 72-220 35-178 (282)
319 PRK10982 galactose/methyl gala 99.6 1.8E-16 3.9E-21 147.0 4.8 78 76-157 250-333 (491)
320 TIGR01257 rim_protein retinal- 99.6 8.3E-16 1.8E-20 160.1 9.8 142 74-219 1935-2088(2272)
321 PLN03073 ABC transporter F fam 99.6 3E-16 6.4E-21 151.4 6.0 133 75-220 507-646 (718)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 2.3E-16 5E-21 148.3 5.2 72 76-156 4-77 (552)
323 PRK10762 D-ribose transporter 99.6 2.1E-16 4.5E-21 147.0 4.5 137 76-219 257-413 (501)
324 PRK10636 putative ABC transpor 99.6 6.4E-16 1.4E-20 147.7 7.6 62 76-139 1-63 (638)
325 TIGR01271 CFTR_protein cystic 99.6 1.1E-15 2.4E-20 157.4 9.6 91 75-167 1216-1312(1490)
326 PRK13409 putative ATPase RIL; 99.6 3.3E-16 7.1E-21 148.3 5.2 132 75-220 339-472 (590)
327 PRK11288 araG L-arabinose tran 99.6 2.3E-16 5.1E-21 146.6 3.9 138 76-219 257-414 (501)
328 COG0396 sufC Cysteine desulfur 99.6 1.2E-15 2.5E-20 127.0 7.4 81 76-158 3-92 (251)
329 TIGR01257 rim_protein retinal- 99.6 5E-16 1.1E-20 161.8 6.0 141 75-219 927-1079(2272)
330 COG4987 CydC ABC-type transpor 99.6 5.9E-16 1.3E-20 141.6 4.7 138 76-216 336-489 (573)
331 cd03237 ABC_RNaseL_inhibitor_d 99.6 7.7E-16 1.7E-20 131.1 4.9 121 89-220 7-134 (246)
332 COG4133 CcmA ABC-type transpor 99.6 2.2E-15 4.8E-20 121.9 7.3 131 77-217 3-146 (209)
333 cd03236 ABC_RNaseL_inhibitor_d 99.6 8.7E-16 1.9E-20 131.5 4.8 137 80-219 4-157 (255)
334 COG4172 ABC-type uncharacteriz 99.6 2.5E-15 5.5E-20 133.7 7.6 144 74-219 4-175 (534)
335 COG4161 ArtP ABC-type arginine 99.6 3.6E-15 7.8E-20 118.6 7.3 78 77-156 3-91 (242)
336 PRK15439 autoinducer 2 ABC tra 99.6 1.5E-15 3.2E-20 141.7 5.7 137 76-219 268-421 (510)
337 PRK10535 macrolide transporter 99.6 1.7E-15 3.7E-20 145.0 6.0 143 75-220 3-163 (648)
338 PRK15177 Vi polysaccharide exp 99.6 7.6E-15 1.6E-19 122.3 8.5 119 90-219 1-122 (213)
339 TIGR00954 3a01203 Peroxysomal 99.6 8.4E-15 1.8E-19 140.5 9.6 74 75-157 450-525 (659)
340 PF01583 APS_kinase: Adenylyls 99.6 4.3E-15 9.3E-20 118.1 6.3 93 101-200 1-97 (156)
341 PRK11147 ABC transporter ATPas 99.6 4.5E-15 9.7E-20 141.8 7.2 62 76-139 3-65 (635)
342 TIGR00956 3a01205 Pleiotropic 99.6 5.6E-15 1.2E-19 151.3 8.2 79 76-156 759-845 (1394)
343 PLN03073 ABC transporter F fam 99.6 5.1E-15 1.1E-19 142.9 7.1 58 76-133 177-238 (718)
344 TIGR03771 anch_rpt_ABC anchore 99.5 4.1E-15 8.9E-20 124.6 4.0 119 97-219 1-131 (223)
345 COG0488 Uup ATPase components 99.5 1.4E-14 2.9E-19 135.2 7.4 135 74-221 319-459 (530)
346 COG5265 ATM1 ABC-type transpor 99.5 6E-15 1.3E-19 131.8 4.3 139 76-216 262-414 (497)
347 COG1101 PhnK ABC-type uncharac 99.5 5.9E-15 1.3E-19 121.9 3.6 68 88-157 18-90 (263)
348 PRK13545 tagH teichoic acids e 99.5 3.1E-14 6.7E-19 132.1 8.7 138 75-220 20-162 (549)
349 cd03238 ABC_UvrA The excision 99.5 5.7E-15 1.2E-19 119.9 3.4 99 88-219 7-105 (176)
350 COG0488 Uup ATPase components 99.5 1.6E-14 3.4E-19 134.8 6.7 73 76-157 3-76 (530)
351 COG4136 ABC-type uncharacteriz 99.5 1.4E-14 3.1E-19 113.9 5.2 80 76-157 2-87 (213)
352 TIGR00955 3a01204 The Eye Pigm 99.5 2.5E-14 5.4E-19 136.3 7.6 79 87-167 36-120 (617)
353 COG4586 ABC-type uncharacteriz 99.5 1.2E-14 2.7E-19 123.7 4.8 66 86-153 34-103 (325)
354 COG4778 PhnL ABC-type phosphon 99.5 1.1E-13 2.3E-18 110.9 9.3 70 71-140 5-76 (235)
355 TIGR00957 MRP_assoc_pro multi 99.5 2.1E-14 4.6E-19 148.3 6.3 134 76-220 636-779 (1522)
356 PLN03130 ABC transporter C fam 99.5 2.2E-14 4.8E-19 148.6 5.0 133 76-219 614-758 (1622)
357 PLN03232 ABC transporter C fam 99.5 2.7E-14 5.8E-19 147.4 5.4 134 76-219 614-758 (1495)
358 PRK13409 putative ATPase RIL; 99.5 3.4E-14 7.4E-19 134.7 5.3 129 82-219 79-230 (590)
359 PRK13546 teichoic acids export 99.5 2E-14 4.4E-19 123.6 3.4 50 88-139 36-86 (264)
360 COG4148 ModC ABC-type molybdat 99.4 2.7E-14 5.9E-19 122.0 2.4 118 94-217 16-144 (352)
361 PLN03140 ABC transporter G fam 99.4 3.3E-13 7.2E-18 138.6 7.8 67 88-156 892-962 (1470)
362 TIGR01271 CFTR_protein cystic 99.4 1.5E-13 3.2E-18 141.9 5.0 120 89-219 439-566 (1490)
363 KOG4238 Bifunctional ATP sulfu 99.4 1.6E-13 3.4E-18 120.7 3.6 91 100-197 48-142 (627)
364 TIGR00956 3a01205 Pleiotropic 99.4 4.5E-13 9.8E-18 137.5 6.9 67 88-156 73-147 (1394)
365 PTZ00243 ABC transporter; Prov 99.4 2.5E-13 5.4E-18 140.6 4.2 126 84-220 668-801 (1560)
366 PLN03140 ABC transporter G fam 99.4 1.6E-13 3.5E-18 140.9 1.5 67 88-156 177-248 (1470)
367 COG4615 PvdE ABC-type sideroph 99.3 4.2E-12 9.2E-17 113.1 8.9 66 76-143 322-389 (546)
368 cd00820 PEPCK_HprK Phosphoenol 99.3 1.6E-12 3.5E-17 97.0 5.3 72 89-169 2-77 (107)
369 cd03278 ABC_SMC_barmotin Barmo 99.3 6.4E-13 1.4E-17 109.6 3.1 105 93-217 14-129 (197)
370 KOG0059 Lipid exporter ABCA1 a 99.3 2.1E-12 4.7E-17 127.5 7.2 137 75-217 563-714 (885)
371 KOG0054 Multidrug resistance-a 99.3 3.1E-12 6.6E-17 129.0 7.8 80 75-156 1137-1223(1381)
372 TIGR01187 potA spermidine/putr 99.3 4.7E-13 1E-17 118.3 1.8 111 107-220 1-119 (325)
373 KOG0060 Long-chain acyl-CoA tr 99.3 9.6E-12 2.1E-16 115.0 9.3 130 74-220 431-589 (659)
374 PRK03846 adenylylsulfate kinas 99.3 4.9E-12 1.1E-16 104.1 6.5 92 87-178 9-104 (198)
375 KOG0061 Transporter, ABC super 99.3 4.2E-12 9E-17 120.9 6.4 67 88-156 42-113 (613)
376 COG4138 BtuD ABC-type cobalami 99.3 1.5E-12 3.2E-17 104.9 1.4 64 90-155 13-80 (248)
377 KOG0054 Multidrug resistance-a 99.2 1.8E-11 3.8E-16 123.6 6.4 133 76-219 518-661 (1381)
378 COG4178 ABC-type uncharacteriz 99.2 4.1E-11 8.9E-16 112.5 7.0 137 74-219 390-533 (604)
379 KOG0927 Predicted transporter 99.1 4.8E-11 1E-15 109.7 2.7 135 74-221 387-529 (614)
380 TIGR00455 apsK adenylylsulfate 99.1 1.4E-10 3E-15 94.1 5.1 89 90-178 6-98 (184)
381 cd03272 ABC_SMC3_euk Eukaryoti 99.1 3.5E-10 7.6E-15 95.5 7.0 36 85-125 11-46 (243)
382 TIGR03238 dnd_assoc_3 dnd syst 99.0 1.5E-10 3.2E-15 106.1 4.3 50 90-143 20-71 (504)
383 PRK00889 adenylylsulfate kinas 99.0 1.8E-09 3.9E-14 86.8 7.4 76 100-176 2-82 (175)
384 KOG0064 Peroxisomal long-chain 98.9 2.6E-09 5.5E-14 98.4 7.8 125 77-217 482-628 (728)
385 COG4170 SapD ABC-type antimicr 98.9 2.5E-09 5.3E-14 88.8 6.9 73 86-158 17-100 (330)
386 KOG0065 Pleiotropic drug resis 98.9 1.3E-09 2.8E-14 108.9 5.8 83 74-158 785-875 (1391)
387 cd03270 ABC_UvrA_I The excisio 98.9 1E-09 2.2E-14 92.3 4.3 34 86-119 5-38 (226)
388 COG1129 MglA ABC-type sugar tr 98.9 1.4E-09 3E-14 100.4 5.4 134 75-219 262-419 (500)
389 KOG0927 Predicted transporter 98.9 3.5E-09 7.6E-14 97.6 6.7 56 73-128 72-128 (614)
390 cd03279 ABC_sbcCD SbcCD and ot 98.9 9E-10 2E-14 91.6 2.0 129 77-218 6-140 (213)
391 KOG0066 eIF2-interacting prote 98.8 1.9E-09 4.2E-14 97.6 3.5 132 74-218 584-721 (807)
392 PRK06002 fliI flagellum-specif 98.8 3.3E-08 7.1E-13 90.7 10.3 78 75-155 138-228 (450)
393 COG3845 ABC-type uncharacteriz 98.8 3.8E-09 8.2E-14 96.5 3.7 82 74-157 255-344 (501)
394 COG1245 Predicted ATPase, RNas 98.8 5.5E-09 1.2E-13 94.9 4.1 113 91-219 351-473 (591)
395 cd03274 ABC_SMC4_euk Eukaryoti 98.7 3.7E-09 7.9E-14 88.2 2.0 42 77-124 6-47 (212)
396 cd02027 APSK Adenosine 5'-phos 98.7 3E-08 6.4E-13 78.2 6.1 74 104-177 1-78 (149)
397 COG2401 ABC-type ATPase fused 98.7 6.9E-09 1.5E-13 93.4 2.6 52 76-127 383-434 (593)
398 cd03240 ABC_Rad50 The catalyti 98.7 7.8E-09 1.7E-13 85.6 2.5 60 94-156 15-80 (204)
399 PRK05537 bifunctional sulfate 98.7 5.8E-08 1.3E-12 91.9 7.7 78 99-176 389-471 (568)
400 cd03271 ABC_UvrA_II The excisi 98.6 4.4E-08 9.6E-13 84.3 6.0 35 88-122 7-41 (261)
401 PF12558 DUF3744: ATP-binding 98.6 3.4E-09 7.4E-14 74.1 -0.9 68 17-84 1-74 (74)
402 PRK09825 idnK D-gluconate kina 98.6 7.8E-08 1.7E-12 78.0 6.2 38 101-143 2-39 (176)
403 PRK07196 fliI flagellum-specif 98.6 1.1E-07 2.4E-12 87.0 7.9 68 88-156 142-221 (434)
404 KOG2355 Predicted ABC-type tra 98.6 7.7E-08 1.7E-12 79.7 5.8 63 76-140 13-77 (291)
405 cd03273 ABC_SMC2_euk Eukaryoti 98.6 4.9E-08 1.1E-12 83.1 4.7 53 102-156 25-86 (251)
406 KOG0062 ATPase component of AB 98.6 5.7E-08 1.2E-12 89.3 5.0 48 77-124 81-128 (582)
407 cd01130 VirB11-like_ATPase Typ 98.6 6E-08 1.3E-12 79.0 4.4 45 93-139 16-61 (186)
408 PRK05506 bifunctional sulfate 98.5 1.3E-07 2.9E-12 90.7 6.6 90 88-177 446-539 (632)
409 PRK08149 ATP synthase SpaL; Va 98.5 4.4E-07 9.5E-12 83.0 8.7 66 87-155 137-214 (428)
410 PRK05541 adenylylsulfate kinas 98.5 2.1E-07 4.6E-12 74.8 5.4 45 99-145 4-50 (176)
411 PRK10078 ribose 1,5-bisphospho 98.5 1.9E-07 4.2E-12 76.0 5.1 54 102-159 2-59 (186)
412 cd03283 ABC_MutS-like MutS-lik 98.5 1.3E-07 2.9E-12 78.1 4.0 35 90-126 15-49 (199)
413 TIGR02858 spore_III_AA stage I 98.4 2E-07 4.3E-12 80.6 3.7 52 103-156 112-169 (270)
414 PF13555 AAA_29: P-loop contai 98.4 4.8E-07 1E-11 60.9 4.2 34 94-127 14-48 (62)
415 cd03282 ABC_MSH4_euk MutS4 hom 98.4 4E-07 8.8E-12 75.5 4.2 39 88-126 15-53 (204)
416 PRK07721 fliI flagellum-specif 98.3 1E-06 2.2E-11 81.0 7.1 64 88-154 145-221 (438)
417 cd03280 ABC_MutS2 MutS2 homolo 98.3 5.8E-07 1.3E-11 74.0 4.5 33 91-123 16-49 (200)
418 cd03243 ABC_MutS_homologs The 98.3 4.6E-07 9.9E-12 74.7 3.8 32 94-125 21-52 (202)
419 PRK06315 type III secretion sy 98.3 2E-06 4.4E-11 79.0 8.0 71 88-160 151-237 (442)
420 TIGR00235 udk uridine kinase. 98.3 5.3E-07 1.1E-11 74.6 3.2 29 100-128 4-32 (207)
421 PRK07960 fliI flagellum-specif 98.3 2.3E-06 4.9E-11 78.6 7.6 65 88-155 162-237 (455)
422 KOG0062 ATPase component of AB 98.2 8.8E-07 1.9E-11 81.6 4.2 134 74-221 360-502 (582)
423 TIGR02322 phosphon_PhnN phosph 98.2 1.4E-06 3E-11 70.1 4.8 31 102-132 1-31 (179)
424 cd03276 ABC_SMC6_euk Eukaryoti 98.2 4.6E-07 9.9E-12 74.7 1.8 34 92-126 12-45 (198)
425 PRK09862 putative ATP-dependen 98.2 1.3E-06 2.9E-11 81.5 4.9 60 80-141 188-248 (506)
426 PRK09270 nucleoside triphospha 98.2 9.6E-07 2.1E-11 74.2 3.6 33 100-132 31-64 (229)
427 PRK00300 gmk guanylate kinase; 98.2 1.1E-06 2.4E-11 72.1 3.6 28 100-127 3-30 (205)
428 TIGR00767 rho transcription te 98.2 9.3E-06 2E-10 73.6 9.5 54 74-127 128-193 (415)
429 cd02026 PRK Phosphoribulokinas 98.2 1.2E-06 2.6E-11 75.9 3.2 52 104-157 1-55 (273)
430 cd03287 ABC_MSH3_euk MutS3 hom 98.1 3E-06 6.5E-11 71.3 4.9 44 89-132 18-63 (222)
431 PRK05688 fliI flagellum-specif 98.1 8.9E-06 1.9E-10 74.9 8.3 39 88-127 155-193 (451)
432 PRK06995 flhF flagellar biosyn 98.1 2.9E-06 6.3E-11 78.7 5.2 41 90-130 244-285 (484)
433 cd01136 ATPase_flagellum-secre 98.1 2.9E-06 6.2E-11 75.2 4.6 45 87-132 55-100 (326)
434 PRK07594 type III secretion sy 98.1 2.2E-06 4.7E-11 78.6 3.9 51 87-140 141-192 (433)
435 PRK00635 excinuclease ABC subu 98.1 3.1E-06 6.8E-11 88.4 5.5 50 81-133 940-989 (1809)
436 TIGR03263 guanyl_kin guanylate 98.1 2.8E-06 6.1E-11 68.2 3.5 26 102-127 1-26 (180)
437 PLN02796 D-glycerate 3-kinase 98.1 1.7E-06 3.6E-11 77.0 2.3 52 90-143 80-143 (347)
438 cd03284 ABC_MutS1 MutS1 homolo 98.1 2.9E-06 6.4E-11 70.9 3.6 37 89-126 18-54 (216)
439 TIGR01313 therm_gnt_kin carboh 98.1 4.8E-06 1E-10 66.0 4.5 33 105-142 1-33 (163)
440 TIGR02788 VirB11 P-type DNA tr 98.1 4.8E-06 1E-10 73.2 4.8 38 95-132 137-175 (308)
441 PRK09099 type III secretion sy 98.1 5.3E-06 1.1E-10 76.3 5.1 51 87-140 149-200 (441)
442 PRK01889 GTPase RsgA; Reviewed 98.1 3.5E-06 7.5E-11 75.6 3.8 46 92-139 185-231 (356)
443 cd03285 ABC_MSH2_euk MutS2 hom 98.0 4.6E-06 9.9E-11 70.1 4.3 38 88-125 16-53 (222)
444 TIGR00630 uvra excinuclease AB 98.0 4.5E-06 9.8E-11 83.0 4.8 41 76-121 612-652 (924)
445 COG0178 UvrA Excinuclease ATPa 98.0 4.8E-06 1E-10 80.4 4.6 30 90-119 615-644 (935)
446 TIGR00554 panK_bact pantothena 98.0 5E-06 1.1E-10 72.6 4.1 33 100-132 60-95 (290)
447 PRK05480 uridine/cytidine kina 98.0 6.8E-06 1.5E-10 67.9 4.7 28 100-127 4-31 (209)
448 TIGR02524 dot_icm_DotB Dot/Icm 98.0 3.7E-05 7.9E-10 69.1 9.4 27 100-126 132-158 (358)
449 PRK13477 bifunctional pantoate 98.0 8.4E-06 1.8E-10 76.2 5.3 48 84-132 267-318 (512)
450 cd02023 UMPK Uridine monophosp 98.0 4.8E-06 1E-10 68.1 3.3 23 104-126 1-23 (198)
451 TIGR02546 III_secr_ATP type II 98.0 6.3E-06 1.4E-10 75.5 4.3 44 88-132 132-176 (422)
452 cd03275 ABC_SMC1_euk Eukaryoti 98.0 5.7E-06 1.2E-10 70.3 3.7 29 104-132 24-53 (247)
453 TIGR03497 FliI_clade2 flagella 98.0 9.3E-06 2E-10 74.2 5.1 52 87-141 123-175 (413)
454 KOG0065 Pleiotropic drug resis 98.0 1.1E-05 2.5E-10 81.4 6.0 67 88-156 127-198 (1391)
455 TIGR03498 FliI_clade3 flagella 98.0 6.8E-06 1.5E-10 75.1 4.1 50 88-140 127-177 (418)
456 cd02025 PanK Pantothenate kina 98.0 6.7E-06 1.4E-10 69.0 3.6 29 104-132 1-32 (220)
457 KOG0066 eIF2-interacting prote 97.9 7.4E-06 1.6E-10 74.7 3.8 63 77-141 265-330 (807)
458 TIGR01026 fliI_yscN ATPase Fli 97.9 7.7E-06 1.7E-10 75.3 3.9 44 88-132 150-194 (440)
459 TIGR00750 lao LAO/AO transport 97.9 9.1E-06 2E-10 71.2 4.1 44 89-132 21-64 (300)
460 PF13476 AAA_23: AAA domain; P 97.9 8.7E-06 1.9E-10 65.6 3.4 33 93-126 11-43 (202)
461 PRK08972 fliI flagellum-specif 97.9 1.8E-05 4E-10 72.5 5.5 40 88-128 149-188 (444)
462 TIGR03496 FliI_clade1 flagella 97.9 1.4E-05 3.1E-10 73.0 4.7 50 88-140 124-174 (411)
463 PRK08472 fliI flagellum-specif 97.9 1.2E-05 2.6E-10 73.7 4.3 52 88-142 144-196 (434)
464 PRK00349 uvrA excinuclease ABC 97.9 1.3E-05 2.8E-10 79.9 4.8 33 91-123 624-656 (943)
465 COG1245 Predicted ATPase, RNas 97.9 1.5E-05 3.3E-10 72.8 4.8 33 99-131 97-130 (591)
466 PRK10416 signal recognition pa 97.9 1.5E-05 3.2E-10 70.5 4.3 55 100-155 112-176 (318)
467 PRK11545 gntK gluconate kinase 97.9 1E-05 2.2E-10 64.7 2.9 44 108-156 1-47 (163)
468 PRK05922 type III secretion sy 97.9 2.2E-05 4.7E-10 72.0 5.4 44 88-132 144-188 (434)
469 PRK00635 excinuclease ABC subu 97.9 1.7E-05 3.6E-10 83.1 5.1 31 90-120 609-639 (1809)
470 PRK09183 transposase/IS protei 97.9 1.2E-05 2.5E-10 69.2 3.3 48 90-138 91-138 (259)
471 TIGR00368 Mg chelatase-related 97.8 1.4E-05 3E-10 74.8 3.7 53 87-141 196-249 (499)
472 PF13207 AAA_17: AAA domain; P 97.8 1.4E-05 3.1E-10 59.8 3.0 23 104-126 1-23 (121)
473 smart00382 AAA ATPases associa 97.8 3.3E-05 7.1E-10 57.4 4.9 40 101-141 1-41 (148)
474 cd03281 ABC_MSH5_euk MutS5 hom 97.8 2.1E-05 4.5E-10 65.6 4.1 40 93-132 20-61 (213)
475 PRK08233 hypothetical protein; 97.8 3E-05 6.5E-10 62.0 4.9 28 101-128 2-29 (182)
476 cd01131 PilT Pilus retraction 97.8 2.9E-05 6.3E-10 63.9 4.8 29 104-132 3-33 (198)
477 cd00879 Sar1 Sar1 subfamily. 97.8 1.9E-05 4.1E-10 63.6 3.6 33 91-124 9-41 (190)
478 PLN02318 phosphoribulokinase/u 97.8 2.3E-05 5.1E-10 74.1 4.3 50 102-156 65-114 (656)
479 PRK06936 type III secretion sy 97.8 4.1E-05 8.9E-10 70.3 5.8 51 88-140 149-199 (439)
480 PRK06762 hypothetical protein; 97.8 2.3E-05 5E-10 62.2 3.6 39 102-143 2-40 (166)
481 PRK06793 fliI flagellum-specif 97.8 3.4E-05 7.3E-10 70.8 4.9 50 88-140 143-193 (432)
482 PF00485 PRK: Phosphoribulokin 97.8 2.2E-05 4.9E-10 64.2 3.4 27 104-130 1-27 (194)
483 cd00071 GMPK Guanosine monopho 97.7 6.8E-05 1.5E-09 58.2 5.9 24 104-127 1-24 (137)
484 TIGR00101 ureG urease accessor 97.7 2.3E-05 4.9E-10 64.8 3.4 29 104-132 3-31 (199)
485 KOG0063 RNAse L inhibitor, ABC 97.7 4.1E-05 8.8E-10 69.7 5.2 46 85-130 344-396 (592)
486 cd02021 GntK Gluconate kinase 97.7 6.3E-05 1.4E-09 58.6 5.4 35 104-143 1-35 (150)
487 cd03286 ABC_MSH6_euk MutS6 hom 97.7 3.9E-05 8.4E-10 64.4 4.2 39 88-126 16-54 (218)
488 PRK04863 mukB cell division pr 97.7 5E-05 1.1E-09 78.8 5.7 45 93-140 19-64 (1486)
489 cd03227 ABC_Class2 ABC-type Cl 97.7 4.3E-05 9.3E-10 60.8 4.1 38 94-131 13-51 (162)
490 TIGR01360 aden_kin_iso1 adenyl 97.7 2.1E-05 4.6E-10 63.2 2.3 31 102-132 3-37 (188)
491 PRK06696 uridine kinase; Valid 97.7 4.7E-05 1E-09 63.7 4.2 37 101-137 21-57 (223)
492 KOG3354 Gluconate kinase [Carb 97.7 0.00013 2.8E-09 58.0 6.4 61 104-169 14-79 (191)
493 cd02019 NK Nucleoside/nucleoti 97.7 3.3E-05 7.1E-10 52.9 2.7 23 104-126 1-23 (69)
494 TIGR00150 HI0065_YjeE ATPase, 97.7 4.6E-05 1E-09 59.1 3.8 30 98-127 18-47 (133)
495 PRK14722 flhF flagellar biosyn 97.7 3.4E-05 7.4E-10 69.6 3.5 38 89-126 124-161 (374)
496 PRK14723 flhF flagellar biosyn 97.7 4.4E-05 9.5E-10 74.3 4.3 41 90-130 173-214 (767)
497 PRK07429 phosphoribulokinase; 97.6 6.5E-05 1.4E-09 66.7 4.8 54 102-156 8-63 (327)
498 cd00227 CPT Chloramphenicol (C 97.6 5E-05 1.1E-09 61.0 3.5 27 101-127 1-27 (175)
499 COG3265 GntK Gluconate kinase 97.6 2.5E-05 5.4E-10 61.4 1.5 57 108-169 1-62 (161)
500 PRK10751 molybdopterin-guanine 97.6 4.7E-05 1E-09 61.6 3.1 29 102-130 6-34 (173)
No 1
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.93 E-value=4e-26 Score=194.08 Aligned_cols=136 Identities=21% Similarity=0.220 Sum_probs=113.5
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccce
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
.++++|++++|+.+++++++||++++|++++|+||||||||||+|+|+|++ |.+|+| +++|+++.+ ++.+.++
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V--~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV--LLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE--EECCCchhhcCHHHHhhhEE
Confidence 477899999999999999999999999999999999999999999999999 578999 999999975 6889999
Q ss_pred eeccChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHH-------------HHHHHHHHhhhcchhHHHhhhh
Q 027590 151 FKAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQG-------------TQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
|+||.+..... +|.+++.+|+.|..+... .+...+.+. +++.+.++|+|+||+++++++.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~------~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL 153 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFG------RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL 153 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCccccccc------CCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH
Confidence 99999754443 799999999998765542 123333333 3445567888999999999998
Q ss_pred hcc
Q 027590 217 HMN 219 (221)
Q Consensus 217 ~~~ 219 (221)
..+
T Consensus 154 aQ~ 156 (258)
T COG1120 154 AQE 156 (258)
T ss_pred hcC
Confidence 765
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=2.8e-25 Score=182.80 Aligned_cols=143 Identities=18% Similarity=0.129 Sum_probs=104.1
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~i 149 (221)
+++++|++++||...+|++||+++++||+++|+||||||||||+|+|+++. +++|+| .++|+++.. .+++++
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I--~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI--TVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceE--EECCEeccchhhHHHHHHhc
Confidence 577899999999999999999999999999999999999999999999998 689999 899987642 578899
Q ss_pred eeeccChHHHHH-HHHHHhcccceeee-----hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccCC
Q 027590 150 SFKAEDRVENIR-RIEKIEMPAVQCCQ-----KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNHH 221 (221)
Q Consensus 150 g~v~q~~~~~~~-~v~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (221)
|+|||+-+-.-. ++.+...++-+... .+.+....++ ..-...+.++..-.+||+|++||++++++.+|++.
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL-~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELL-EKVGLADKADAYPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHH-HHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCC
Confidence 999998654332 45554444211110 0000000010 01112334455556788899999999999999863
No 3
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.9e-24 Score=180.18 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=109.2
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccc-cccceee
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL-NRDLSFK 152 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~-~~~ig~v 152 (221)
..++++|+++.|+..+++++|||++.+|++++|+||||||||||+|+|.|++ |.+|+| .+.|.+..+.. ...||||
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i--~~~g~~~~~~~~~~~IgYV 80 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI--KIFGKPVRKRRKRLRIGYV 80 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE--EEccccccccccCCeEEEc
Confidence 3578899999998658999999999999999999999999999999999998 688999 88898876533 4679999
Q ss_pred ccChHHHHH---HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHH-------------HHHhhhcchhHHHhhhh
Q 027590 153 AEDRVENIR---RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAF-------------TSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 153 ~q~~~~~~~---~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~~~ 216 (221)
||....... +|.+++.+|+....+++ ..+...+++.+++++ .+||+|++||+.+|+|.
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~------~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWF------RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCccccccc------ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence 997633332 79999999866544333 233444455555554 46778999999999988
Q ss_pred hccC
Q 027590 217 HMNH 220 (221)
Q Consensus 217 ~~~~ 220 (221)
..+.
T Consensus 155 ~~~p 158 (254)
T COG1121 155 AQNP 158 (254)
T ss_pred ccCC
Confidence 7654
No 4
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.89 E-value=2.1e-23 Score=183.55 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=100.2
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceee
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFK 152 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v 152 (221)
.++++|+.+.|++..+++++||++++||+++|+||||||||||||+|+|+. |++|+| +++|+++++ ...++|+||
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I--~i~g~~vt~l~P~~R~iamV 80 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI--LIDGRDVTDLPPEKRGIAMV 80 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEECCCCChhHCCEEEE
Confidence 467889999998876999999999999999999999999999999999999 699999 999999987 567899999
Q ss_pred ccChHHHHH-HHHHHhcccceee----ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENIR-RIEKIEMPAVQCC----QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~~-~v~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
||+..-.-. +|.+....+.-.. ........... ..-......++.-.++|+|++||+++|++...+.
T Consensus 81 FQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva-~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 81 FQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA-KLLGLEHLLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred eCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHH-HHcCChhHHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 998533222 3333322211100 00000000000 0001122344556789999999999999987653
No 5
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.89 E-value=7.4e-24 Score=187.38 Aligned_cols=143 Identities=16% Similarity=0.095 Sum_probs=108.3
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--ccccccee
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSF 151 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~ 151 (221)
..++++++++.|++..+++|+||+|++||+++|+||||||||||||+|+|+. |++|+| .++|+++.+ .-++.||+
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I--~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI--LLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEECCCCChhhcccce
Confidence 4678899999999999999999999999999999999999999999999998 799999 999999987 56788999
Q ss_pred eccChHHHHH-HHHHHhcccceee-----ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDRVENIR-RIEKIEMPAVQCC-----QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~~~~~~-~v~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|||+-.-.-. +|++.+..|+-.. ..........+.. -.....+.+.-.++|+|++||++++++...++
T Consensus 82 VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~l-V~L~~~~~R~p~qLSGGQqQRVALARAL~~~P 155 (352)
T COG3842 82 VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALEL-VGLEGFADRKPHQLSGGQQQRVALARALVPEP 155 (352)
T ss_pred eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHH-cCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence 9998543322 4555555543310 0011111111111 12234566777899999999999999887654
No 6
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.4e-23 Score=174.62 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=113.1
Q ss_pred ceeeeeeeEec-CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------ccc
Q 027590 76 VAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------GLN 146 (221)
Q Consensus 76 ~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~~~ 146 (221)
+++++|++..| +.+++|++|||+|++||+++|+|+||||||||+|+|+|+. +++|++ .++|.++.. ..+
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i--~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI--LFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE--EecccchhccchHHHHHHH
Confidence 57889999999 8899999999999999999999999999999999999998 688999 899988764 357
Q ss_pred ccceeeccChHHHHH-HHHHHhcccceeeehhhhhcccccccch-----------hhHHHHHHHHHHHhhhcchhHHHhh
Q 027590 147 RDLSFKAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFK-----------CVRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 147 ~~ig~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
+++||+||+.+-.-+ .+-+.+..|+....+.+.....|....+ .-.+.+.+++..||+|++||+.+++
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 889999999865545 7777777777766655554444431111 1123456667788899999999999
Q ss_pred hhhcc
Q 027590 215 MIHMN 219 (221)
Q Consensus 215 ~~~~~ 219 (221)
+...+
T Consensus 161 aL~Q~ 165 (258)
T COG3638 161 ALVQQ 165 (258)
T ss_pred HHhcC
Confidence 87654
No 7
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.6e-23 Score=172.66 Aligned_cols=141 Identities=16% Similarity=0.114 Sum_probs=103.6
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeecc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q 154 (221)
.+.++++++.|+...+++++||++.+||+++|+||||||||||+|+|+|+. |++|++ .++|+.+ .+...++|||||
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V--~~~g~~v-~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV--LLDGRPV-TGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCccc-CCCCCCEEEEec
Confidence 467888999999999999999999999999999999999999999999999 788999 8999998 667788999999
Q ss_pred ChHHHH-HHHHHHhcccceeee-h---hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 155 DRVENI-RRIEKIEMPAVQCCQ-K---EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 155 ~~~~~~-~~v~~~~~~g~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+..-.- +++.+.+.++..... . ..+....+.... ......+..-.++|+|||||+.++++...++
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~V-gL~~~~~~~P~qLSGGMrQRVaiARAL~~~P 149 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELV-GLAGFEDKYPHQLSGGMRQRVAIARALATRP 149 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHc-CCcchhhcCccccChHHHHHHHHHHHHhcCC
Confidence 965322 467777766432210 0 000000011000 1112233444678889999999999877654
No 8
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=2.1e-22 Score=167.25 Aligned_cols=144 Identities=13% Similarity=0.163 Sum_probs=118.0
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccccc-----ccccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH-----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~-----~~~~~ 148 (221)
+++++.+++..|+..++|++|||++++||+++|+|+||+|||||+|+|+|+++ .+|+| .|+|+|+.+ -.+..
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I--~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI--IFDGEDITGLPPHERARLG 79 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE--EECCeecCCCCHHHHHhCC
Confidence 46889999999999999999999999999999999999999999999999995 68999 899999986 35677
Q ss_pred ceeeccChHHHHH-HHHHHhcccceeeeh--hhhh-cccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 149 LSFKAEDRVENIR-RIEKIEMPAVQCCQK--EISL-RCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~g~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|+||||-++-.-+ +|.|...+|...... .... .+.....|...+++..+..-.+|+|++|=+++|++.-.++
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 9999999876666 788888886544332 1111 1222345667788888999999999999999999876543
No 9
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=2e-22 Score=168.14 Aligned_cols=145 Identities=17% Similarity=0.079 Sum_probs=104.4
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------cc
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------GL 145 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~~ 145 (221)
.+++++++++++|+++.+++++||+|++||+++|+|+||||||||+|+|.|++ |++|+| .++|+++.+ .+
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI--~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI--LIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE--EEcCcchhccCHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999 789999 999999864 46
Q ss_pred cccceeeccChHHHHH-HHHHHhcc-----cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 146 NRDLSFKAEDRVENIR-RIEKIEMP-----AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~~-~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++++|++||.-.-.-. +|.|.+.. ...+-.-..+....+..........++..-.++|+||+.|+.++++.+.+
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 7889999997432221 33333332 11110000000001111111222235556679999999999999998876
Q ss_pred C
Q 027590 220 H 220 (221)
Q Consensus 220 ~ 220 (221)
+
T Consensus 164 P 164 (263)
T COG1127 164 P 164 (263)
T ss_pred C
Confidence 5
No 10
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.6e-22 Score=173.99 Aligned_cols=141 Identities=18% Similarity=0.111 Sum_probs=104.8
Q ss_pred eeeeeeeEecCC-----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------
Q 027590 77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------- 143 (221)
Q Consensus 77 ~~~~~~~~~~~~-----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------- 143 (221)
++.+++++.|.. ..++++|||+|++||+++|+|.||||||||+|+++++. |++|++ .++|+++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v--~v~G~di~~l~~~~Lr 79 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV--FVDGQDLTALSEAELR 79 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE--EEcCEecccCChHHHH
Confidence 456677766654 57999999999999999999999999999999999998 899999 899988864
Q ss_pred cccccceeeccChHHHH-HHHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 144 GLNRDLSFKAEDRVENI-RRIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 144 ~~~~~ig~v~q~~~~~~-~~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
.++++|||+||+.+-.- ++|.+.+.+.. .+-........++.... ...+.++..-.+||+|++||+.++++...
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV-gL~dk~~~yP~qLSGGQKQRVaIARALa~ 158 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-GLSDKADRYPAQLSGGQKQRVAIARALAN 158 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc-CChhhhccCchhcCcchhhHHHHHHHHhc
Confidence 57889999999987655 46766665511 11111222222222121 22355666678999999999999999876
Q ss_pred cC
Q 027590 219 NH 220 (221)
Q Consensus 219 ~~ 220 (221)
++
T Consensus 159 ~P 160 (339)
T COG1135 159 NP 160 (339)
T ss_pred CC
Confidence 54
No 11
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=4e-22 Score=166.65 Aligned_cols=142 Identities=20% Similarity=0.183 Sum_probs=105.2
Q ss_pred ceeeeeeeEecCCcc----ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cc
Q 027590 76 VAKSTNILWHKNSVD----KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GL 145 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~----~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~ 145 (221)
+++++|+++.|+... ++++|||++.+||+++|+|+||||||||+|+|+|+. |+.|+| .++|+.+.. .+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I--~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI--LLDGKPLAPKKRAKAF 80 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE--EECCcccCccccchhh
Confidence 577889999998776 999999999999999999999999999999999999 788999 899987764 36
Q ss_pred cccceeeccChHHHH---HHHHHHhccccee--eehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 146 NRDLSFKAEDRVENI---RRIEKIEMPAVQC--CQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~---~~v~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.+.+.+||||+..-+ .++.++......+ ....-.....+........+..++.--++|+|++||+.+++|...+
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence 788999999974332 2455544442222 0000000111222334445566666778999999999999988755
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.86 E-value=1.4e-21 Score=164.46 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=102.9
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccccee
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLSF 151 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig~ 151 (221)
++.+|+++.|+...+++++||+|++||+++++|||||||||++|+|++++ |++|+| +++|+++.+ .++++|||
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I--~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI--LIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE--EECCeecccCCHHHHHHhhhh
Confidence 57789999999999999999999999999999999999999999999999 799999 999999986 68899999
Q ss_pred eccCh--------HHHHHHHHHHhcccceeeehhhhhcccccccchhh-HHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDR--------VENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCV-RQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~--------~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|-|.. .+|+..|-.+..-..--+ .....+.+.....+ .+-+++.-.+||+|++||+-++++.++++
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i---~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERI---KKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHH---HHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 98863 333333333221111001 11111111111221 34556667889999999999999888764
No 13
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=2.4e-22 Score=167.94 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=91.8
Q ss_pred eeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--------c
Q 027590 78 KSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------G 144 (221)
Q Consensus 78 ~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------~ 144 (221)
+..++.+.|+. ..+|+++||+|++||+++|+||||||||||+++|.++. |++|.+ .++|.++.. .
T Consensus 3 ~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v--~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 3 ELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV--LINGKDLTKLSEKELAKL 80 (226)
T ss_pred EEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE--EECCEEcCcCCHHHHHHH
Confidence 34555555532 57999999999999999999999999999999999998 788998 899988764 3
Q ss_pred ccccceeeccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 145 LNRDLSFKAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+++.|||+||+-+-.-. ++.|.+.+.. ........................+....++|+|++||++++++...+
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 56779999998532221 3333333210 000000000000000111111222244679999999999999987654
Q ss_pred C
Q 027590 220 H 220 (221)
Q Consensus 220 ~ 220 (221)
+
T Consensus 161 P 161 (226)
T COG1136 161 P 161 (226)
T ss_pred C
Confidence 3
No 14
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.3e-22 Score=164.39 Aligned_cols=143 Identities=17% Similarity=0.135 Sum_probs=102.8
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-cc-----CceEEEEECCccccc-----
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW-----RGKLTYILDGDNCRH----- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~-----~G~i~~~l~g~~~~~----- 143 (221)
..+++.++.+.|++..+|++||+.|+++++++|+||||||||||+|+++++. .. +|++ .++|+++..
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v--~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV--LLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE--EECCeeccCCCCCH
Confidence 4678889999999999999999999999999999999999999999999996 22 4888 899999975
Q ss_pred -cccccceeeccChHHHHHHHHHHh----cc-cceeeehhhhhccccc---ccchhhHHHHHHHHHHHhhhcchhHHHhh
Q 027590 144 -GLNRDLSFKAEDRVENIRRIEKIE----MP-AVQCCQKEISLRCSWM---CHFKCVRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~~~~~v~~~~----~~-g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
.+++++|+|||.|+-.-..+.+.+ ++ |... ..+.+..+.-+ ..-+...++.++....||+|++||+-+++
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 588999999998754333333333 33 3222 11111111100 01122233444445568999999999999
Q ss_pred hhhccC
Q 027590 215 MIHMNH 220 (221)
Q Consensus 215 ~~~~~~ 220 (221)
+.+.++
T Consensus 163 alAv~P 168 (253)
T COG1117 163 ALAVKP 168 (253)
T ss_pred HHhcCC
Confidence 988764
No 15
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.85 E-value=1.3e-21 Score=158.30 Aligned_cols=140 Identities=17% Similarity=0.153 Sum_probs=100.8
Q ss_pred eeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------cccc
Q 027590 77 AKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------GLNR 147 (221)
Q Consensus 77 ~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~~~~ 147 (221)
++.+++++.|. ...+|+++||+|++||++-|+||||||||||+|+|++.. |+.|+| .++|.++.+ .+++
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i--~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI--LVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE--EECCeecccccccccchhhh
Confidence 45677888885 455999999999999999999999999999999999998 899999 999999875 4789
Q ss_pred cceeeccChHHHH-HHHHHHhcccceeee----hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 148 DLSFKAEDRVENI-RRIEKIEMPAVQCCQ----KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 148 ~ig~v~q~~~~~~-~~v~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+||+||||-.-.. +++.+.+.+.+..+- .+.....+.+ ........++..-.+||+|++||+.++++..-+
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L-~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~ 155 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVL-DLVGLKHKARALPSQLSGGEQQRVAIARAIVNQ 155 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHH-HHhccchhhhcCccccCchHHHHHHHHHHHccC
Confidence 9999999854333 356666555222111 0000000000 011223445555678899999999999987543
No 16
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.85 E-value=1e-21 Score=181.01 Aligned_cols=145 Identities=20% Similarity=0.198 Sum_probs=97.7
Q ss_pred ccceeeeeeeEecC-----------CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccc
Q 027590 74 STVAKSTNILWHKN-----------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (221)
Q Consensus 74 ~~~~~~~~~~~~~~-----------~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~ 141 (221)
.++++++|++..|. .+.++++|||++.+||+++|+|+||||||||+|+|+|++ |++|.+ .++|.++
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i--~~~g~~~ 355 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSI--IFDGQDL 355 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EEeCccc
Confidence 44566666665554 357899999999999999999999999999999999999 678998 8888773
Q ss_pred c--c----cccccceeeccChHHHHH---HHHHHhcc-----cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcc
Q 027590 142 R--H----GLNRDLSFKAEDRVENIR---RIEKIEMP-----AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGR 207 (221)
Q Consensus 142 ~--~----~~~~~ig~v~q~~~~~~~---~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (221)
. . ..++++-++|||+..-+. +|.+.... +...-..................+...+.-.++|+|+|
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 1 1 356789999999733221 33333322 11100111111111111122234467777889999999
Q ss_pred hhHHHhhhhhccC
Q 027590 208 SRVLLGLMIHMNH 220 (221)
Q Consensus 208 ~~~~~~~~~~~~~ 220 (221)
||+.++++...++
T Consensus 436 QRvaIARALa~~P 448 (539)
T COG1123 436 QRVAIARALALEP 448 (539)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999887654
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=7.9e-22 Score=169.58 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=104.4
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCc---cccc--cccccce
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD---NCRH--GLNRDLS 150 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~---~~~~--~~~~~ig 150 (221)
+++.++++.|+...++++||++|+.||+++++||||||||||+|+|+|++ |+.|+| .++|+ |..+ ...++||
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I--~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI--RLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE--EECCEeccchhccchhhccee
Confidence 45677778889999999999999999999999999999999999999999 899999 99999 5544 4568899
Q ss_pred eeccChHHHHH-HHHHHhcccceeee------hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 151 FKAEDRVENIR-RIEKIEMPAVQCCQ------KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
||||+...... +|++....|.-+.. .......+++.. -.....+++.-.++|+|+|||++++++....+
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~l-vqL~~la~ryP~QLSGGQrQRVALARALA~eP 156 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRL-VQLEGLADRYPAQLSGGQRQRVALARALAVEP 156 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHH-hcccchhhcCchhcChHHHHHHHHHHHhhcCC
Confidence 99999885444 78888877653321 000000011000 11122334455678899999999999887653
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=5.9e-21 Score=166.43 Aligned_cols=138 Identities=15% Similarity=0.194 Sum_probs=101.5
Q ss_pred ceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccce
Q 027590 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLS 150 (221)
Q Consensus 76 ~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig 150 (221)
.+.+.|++..|+ .+.+|++|||++++|++++|+||||||||||+|+|+|++ |++|++ .++|.+... ..++.+|
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i--~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI--LVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE--EEcCEeCccCHHHHHhheE
Confidence 467789999999 699999999999999999999999999999999999999 788999 889988764 5677899
Q ss_pred eeccChH--------HHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRV--------ENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~--------~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++|++. +++..++.+..... ....+....+...+.... ..++.+..+|.|+|||+.++.+...+
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~ 154 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHD 154 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcC
Confidence 9999863 33333333322210 000111112222222222 23677899999999999999876544
No 19
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.84 E-value=5.3e-21 Score=156.06 Aligned_cols=138 Identities=15% Similarity=0.173 Sum_probs=110.5
Q ss_pred ceeeeeeeEecCCcc-ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccce
Q 027590 76 VAKSTNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLS 150 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~-~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig 150 (221)
++++.+++++|++.+ +++||||++++|++++|+|||||||||++|+|+.++ |++|.+ +++|-+..+ ..+++||
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v--~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV--TIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceE--EEeecccccChHHHhhhcc
Confidence 356778888998775 999999999999999999999999999999999999 899999 889988754 6788999
Q ss_pred eeccCh--------HHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDR--------VENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~--------~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.++... +|++..++++..++...+.+..+. ....-...+-+++++.++|.|++||+.++++.--+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~----l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAE----LSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHH----HHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 988652 778888888888855444333321 11222445677888999999999999999976443
No 20
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=5.4e-21 Score=157.14 Aligned_cols=142 Identities=19% Similarity=0.152 Sum_probs=109.0
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccce
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
+++..|++++...+.+++++||++++||+++|+||||||||||+|.|+|-+ |++|++ .++|.++.. .+.+.-+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v--~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV--TLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeE--eeCCcChhhCCHHHHHHHhh
Confidence 357788998888999999999999999999999999999999999999999 789999 889999875 4566778
Q ss_pred eeccChHHHHH-HHHHHhcccceeeehhhhhcccc-----cccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSW-----MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
..+|+..--+. .+.|++++|++|...-.++.+.- -.........+.+-...+|+|++||+.+++..+.-
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl 153 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQL 153 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHc
Confidence 88999876665 79999999998874322100000 00011122233444567889999999999987653
No 21
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.6e-20 Score=155.87 Aligned_cols=140 Identities=16% Similarity=0.098 Sum_probs=97.0
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeecc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKAE 154 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~q 154 (221)
++.|+++.|+..++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.++|++|
T Consensus 2 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 2 ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI--LIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred eeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEEcCcCchhhccEEEEcC
Confidence 4678888898788999999999999999999999999999999999998 688999 889988753 23467999999
Q ss_pred ChHHHHH-HHHHHhccccee--e--ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 155 DRVENIR-RIEKIEMPAVQC--C--QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 155 ~~~~~~~-~v~~~~~~g~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++..... ++.+...++... . .........+...... .+..++....+|.|++||+.++++...++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~~qrl~la~al~~~p 149 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGL-EGLLNRYPHELSGGQQQRVALARALAREP 149 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-hhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 8753321 444443331100 0 0000000111111111 12345556789999999999999876653
No 22
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.82 E-value=8.5e-21 Score=171.83 Aligned_cols=141 Identities=20% Similarity=0.235 Sum_probs=103.7
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccce
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
+++++|++++|++.++++++||++++||+++|+||||||||||+|+|+|++ |.+|++ .++|+++.. .+++.+|
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I--~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV--LVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE--EECCEEcCcCCHHHHhcceE
Confidence 578889999999899999999999999999999999999999999999998 688999 899988754 4567899
Q ss_pred eeccChHHHHH-HHHHHhcccceeeehhh--------hhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIR-RIEKIEMPAVQCCQKEI--------SLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++|++..... ++.+.+.+++.+..... ........... ..+..++.+.++|.|++||+.++++...+
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vg-l~~~~~~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTG-VAQFADRPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcC-CchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99998754332 56666655543211100 00011111111 12334556778999999999999987655
No 23
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.1e-20 Score=168.88 Aligned_cols=142 Identities=16% Similarity=0.082 Sum_probs=101.5
Q ss_pred ceeeeeeeEec-CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--ccccccee
Q 027590 76 VAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSF 151 (221)
Q Consensus 76 ~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~ 151 (221)
.++++|+++.| +...+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++.. ..++.|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I--~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI--WIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE--EECCEECCCCCHHHCCEEE
Confidence 47788999999 7788999999999999999999999999999999999998 688999 899998864 23578999
Q ss_pred eccChHHHHH-HHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDRVENIR-RIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~~~~~~-~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|+...... ++.+....+.. .-.........+..... .....++...++|+|++||+.++++...++
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~g-L~~~~~~~~~~LSgGq~QRvalARAL~~~P 153 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILE-LEPLLDRKPRELSGGQRQRVAMGRAIVREP 153 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcC-ChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9998643322 44444433211 00000010111111111 123456667889999999999999877653
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.82 E-value=3.4e-20 Score=162.59 Aligned_cols=143 Identities=13% Similarity=0.043 Sum_probs=100.3
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccce
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLS 150 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig 150 (221)
.+++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.||
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v--~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI--SLCGEPVPSRARHARQRVG 83 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEecccchHHHHhcEE
Confidence 4688999999999889999999999999999999999999999999999998 688999 889998754 3467899
Q ss_pred eeccChHHHHH-HHHHHhcc-cce---eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 151 FKAEDRVENIR-RIEKIEMP-AVQ---CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~-g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++|++..... ++.+.... +.. ...........+..... .....++.+..+|.|++||+.++++...++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrl~la~aL~~~P 157 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK-LENKADAKVGELSGGMKRRLTLARALVNDP 157 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CchHhcCchhhCCHHHHHHHHHHHHHhCCC
Confidence 99998632211 23332221 100 00000010111111111 123445667899999999999999876543
No 25
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.82 E-value=1.6e-20 Score=155.10 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=95.7
Q ss_pred eeeeeEecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-cccccceeeccC
Q 027590 79 STNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-GLNRDLSFKAED 155 (221)
Q Consensus 79 ~~~~~~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-~~~~~ig~v~q~ 155 (221)
+.|+++.|+. .++++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.++|++|+
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI--LLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEEhhhHHhhcceEEEecC
Confidence 4678888876 78999999999999999999999999999999999998 688999 889988743 345679999999
Q ss_pred hHHHH--HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 156 RVENI--RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 156 ~~~~~--~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+...+ .++.+....+.............+...... .+..++....+|.|++||+.++++...++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDL-YALKERHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCC-chhcCCCchhCCHHHHHHHHHHHHHHhCC
Confidence 74322 255555443211000000000011111111 12234556789999999999999876543
No 26
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.82 E-value=1.5e-20 Score=169.06 Aligned_cols=144 Identities=15% Similarity=0.112 Sum_probs=102.0
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccce
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLS 150 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig 150 (221)
.+++++.|+++.|++.++++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++.. ..++.+|
T Consensus 12 ~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I--~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 12 SPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI--MLDGQDITHVPAENRHVN 89 (375)
T ss_pred CceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCEECCCCCHHHCCEE
Confidence 44688999999998888999999999999999999999999999999999999 578999 899998864 2357799
Q ss_pred eeccChHHHHH-HHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 151 FKAEDRVENIR-RIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|+||+....-. ++.+....+.. ...........+..... .....++...++|+|++||+.++++...++
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~p~~LSgGq~QRVaLARaL~~~P 163 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ-LEEFAQRKPHQLSGGQQQRVAIARAVVNKP 163 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999643222 34443333211 00000000011111111 123445567889999999999999877653
No 27
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.8e-20 Score=156.73 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=99.4
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccce
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
.+++.|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI--LIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEEhhhcChHHhhhcEE
Confidence 367888999998888999999999999999999999999999999999998 688999 889988753 3456799
Q ss_pred eeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++|++...-.++.+...++.............+...........++...++|.|++||+.++++...+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999997533235555443321100000000011111111112234456778999999999999987654
No 28
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.7e-20 Score=157.92 Aligned_cols=140 Identities=16% Similarity=0.113 Sum_probs=96.5
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------cccccc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------GLNRDL 149 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~~~~~i 149 (221)
+++|+++.|+..++++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. .+++.+
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 2 ELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV--LIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred eEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEccccChhhHHHHhcce
Confidence 5678888998888999999999999999999999999999999999998 688999 889988743 235679
Q ss_pred eeeccChHHHHH-HHHHHhccccee---ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 150 SFKAEDRVENIR-RIEKIEMPAVQC---CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 150 g~v~q~~~~~~~-~v~~~~~~g~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|++|++..... ++.+...++... .. ............... .+..++....+|.|++||+.++++...+.
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGL-RGAEDLYPAELSGGMKKRVALARALALDP 155 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCC-chhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999998643222 444443332100 00 000000001111111 12235566789999999999999876543
No 29
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.81 E-value=1.8e-20 Score=167.30 Aligned_cols=142 Identities=14% Similarity=0.076 Sum_probs=100.8
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceee
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFK 152 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v 152 (221)
.++++|+++.|+...+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++.. ..++.+||+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I--~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI--YQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEE--EECCEECCCCCHHHCCEEEE
Confidence 477889999998888999999999999999999999999999999999998 688999 899998864 345789999
Q ss_pred ccChHHHHH-HHHHHhccccee----eehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENIR-RIEKIEMPAVQC----CQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~~-~v~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|+....-. ++.+...++... ..........+...... ....++...++|+|++||+.++++...++
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L-~~~~~~~~~~LSgGq~QRvaLARaL~~~P 153 (353)
T TIGR03265 82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGL-PGSERKYPGQLSGGQQQRVALARALATSP 153 (353)
T ss_pred eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-CchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999643221 444443332110 00000111111111111 12345667889999999999999877653
No 30
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.81 E-value=2.3e-20 Score=165.98 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=98.5
Q ss_pred eeeeeeeEecC----CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------c
Q 027590 77 AKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------G 144 (221)
Q Consensus 77 ~~~~~~~~~~~----~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~ 144 (221)
++++|+++.|+ ..++++++||++++||+++|+|+||||||||+|+|+|++ |++|++ .++|.++.. .
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I--~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV--IVDGQDLTTLSNSELTK 79 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEECCcCCHHHHHH
Confidence 56788888884 247999999999999999999999999999999999999 688999 899998854 1
Q ss_pred ccccceeeccChHHHH-HHHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 145 LNRDLSFKAEDRVENI-RRIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~-~~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.++.|||+||+....- .++.+.+.++.. .-............... ..+..++...++|+|++||+.++++...+
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vg-L~~~~~~~~~~LSgGqkQRV~IARAL~~~ 158 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVG-LGDKHDSYPSNLSGGQKQRVAIARALASN 158 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CchhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence 3678999999964332 245544433211 00000000001111111 12234566789999999999999988765
Q ss_pred C
Q 027590 220 H 220 (221)
Q Consensus 220 ~ 220 (221)
+
T Consensus 159 P 159 (343)
T TIGR02314 159 P 159 (343)
T ss_pred C
Confidence 3
No 31
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2e-20 Score=166.84 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=101.0
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--ccccccee
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSF 151 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~ 151 (221)
++++++++++.|++..+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++.. ..++.+||
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I--~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI--FIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE--EECCEECCCCCHHHCCEEE
Confidence 4678899999998888999999999999999999999999999999999999 688999 899998864 33578999
Q ss_pred eccChHHHHH-HHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDRVENIR-RIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~~~~~~-~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|+....-. ++.+....+.. .-.........+..... .....++...++|+|++||+.++++...++
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~g-l~~~~~r~~~~LSgGq~QRVaLARaL~~~P 155 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVD-LAGFEDRYVDQISGGQQQRVALARALILKP 155 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcC-CchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9998643221 34444333211 00000000001110111 112345567889999999999999887653
No 32
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.1e-19 Score=153.53 Aligned_cols=142 Identities=17% Similarity=0.168 Sum_probs=101.7
Q ss_pred ceeeeeeeEecCCc-cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccc-----cccccc
Q 027590 76 VAKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR-----HGLNRD 148 (221)
Q Consensus 76 ~~~~~~~~~~~~~~-~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~-----~~~~~~ 148 (221)
++..+++++.|... .+++++||++.+|++++|+|+||||||||+++++|++ |++|.+ .++|.++. ..+++.
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v--~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV--LVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE--EECCeeccchhhHHHhhcc
Confidence 56788999999665 8999999999999999999999999999999999999 688999 89998865 268899
Q ss_pred ceeeccChHHHHH--HHHHHhcccceeee----hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 149 LSFKAEDRVENIR--RIEKIEMPAVQCCQ----KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 149 ig~v~q~~~~~~~--~v~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|||||+++.++- +|.+-+..|..-.. ............. ...+..++..-.||+|++||++++.+..|+.
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~v-gl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P 157 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELV-GLEELLDRPPFNLSGGQKQRVAIAGVLAMGP 157 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHc-CchhhccCCccccCCcceeeHHhhHHHHcCC
Confidence 9999999987764 56554444321110 0000000000000 0011123444567889999999999888764
No 33
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.81 E-value=2.8e-20 Score=154.66 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=96.8
Q ss_pred eeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------ccc
Q 027590 77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------GLN 146 (221)
Q Consensus 77 ~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~~~ 146 (221)
++++|+++.|+. ..+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. .++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI--RFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEehhhcChhHHHHHH
Confidence 567888888853 46999999999999999999999999999999999998 688999 899988743 135
Q ss_pred ccceeeccChHHHHH-HHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 147 RDLSFKAEDRVENIR-RIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 147 ~~ig~v~q~~~~~~~-~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+.++|++|++..... ++.+...++.. ...........+..... ..+..++....+|.|++||+.++++...+.
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVG-LEGKAHALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-ChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 679999999743322 44444333210 00000000011111111 122345566789999999999999876553
No 34
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.81 E-value=4.1e-20 Score=154.11 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=95.6
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----ccccccee
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDLSF 151 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~ig~ 151 (221)
++.|++++|+..++++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.++|
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI--RFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred EEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEEcCCCCHHHHHhcCeEE
Confidence 5678888898778999999999999999999999999999999999998 588999 889988753 12457999
Q ss_pred eccChHHHHH-HHHHHhcccceee--ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 152 KAEDRVENIR-RIEKIEMPAVQCC--QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 152 v~q~~~~~~~-~v~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++..... ++.+...+..... .........+...........++...++|.|++||+.++++...+
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 9998643322 4444333211000 000000000111111112234556778999999999999987654
No 35
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.3e-20 Score=153.67 Aligned_cols=139 Identities=13% Similarity=0.170 Sum_probs=95.4
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccCh
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~ 156 (221)
+++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++....++.++|++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV--LFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred EEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCCchhHHHHccEEEeccCC
Confidence 4678888888778999999999999999999999999999999999998 688999 8999887654566899999985
Q ss_pred HHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 157 VENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 157 ~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
..... ++.+...... ............+..... .....++...++|.|+++|+.++++...+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLE-LSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC-ChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 32111 2333222110 000000000011111111 12334556788999999999999987654
No 36
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.81 E-value=4.6e-20 Score=153.07 Aligned_cols=141 Identities=18% Similarity=0.138 Sum_probs=96.4
Q ss_pred eeeeeeeEec-CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------cccc
Q 027590 77 AKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------GLNR 147 (221)
Q Consensus 77 ~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~~~~ 147 (221)
++++|+++.| ++..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. .+++
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV--RIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEEcccCCHHHHHHHHh
Confidence 5678888888 4678999999999999999999999999999999999998 688999 889988753 2356
Q ss_pred cceeeccChHHHHH-HHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 148 DLSFKAEDRVENIR-RIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 148 ~ig~v~q~~~~~~~-~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
.++|++|++..... ++.+....+... .. ........+...... .+..++....+|.|++||+.++++...++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGL-EHKADAFPEQLSGGEQQRVAIARAIVNSP 156 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-hhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 79999998753321 344433321100 00 000000001111111 12344556789999999999999876543
No 37
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.81 E-value=3.4e-20 Score=165.53 Aligned_cols=141 Identities=15% Similarity=0.103 Sum_probs=100.0
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeec
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKA 153 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~ 153 (221)
++++++++.|+..++++++||++++||+++|+||||||||||+|+|+|++ |++|+| +++|+++.. ..++.++|++
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I--~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI--RFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCCCCHHHCCEEEEe
Confidence 67889999998888999999999999999999999999999999999998 688999 899998854 3346799999
Q ss_pred cChHHHHH-HHHHHhccccee--------eehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENIR-RIEKIEMPAVQC--------CQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|+....-. ++.+....+... ..........+...... .+..++...++|+|++||+.++++...+.
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGq~QRvalArAL~~~P 155 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQL-AHLADRYPAQLSGGQKQRVALARALAVEP 155 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCC-chhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 98643321 444444332110 00001111111111111 13345567789999999999999876553
No 38
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.4e-20 Score=160.29 Aligned_cols=142 Identities=13% Similarity=0.123 Sum_probs=99.3
Q ss_pred eeeeeeeEecCC-----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------
Q 027590 77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------- 143 (221)
Q Consensus 77 ~~~~~~~~~~~~-----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------- 143 (221)
++++|+++.|+. ..+++++||++++||+++|+|+||||||||+++|+|++ |++|+| +++|.++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i--~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV--TVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEECccccccchH
Confidence 567889988853 36999999999999999999999999999999999998 688999 899988743
Q ss_pred -cccccceeeccChHH-HH-HHHHHHhccccee----eehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 144 -GLNRDLSFKAEDRVE-NI-RRIEKIEMPAVQC----CQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~-~~-~~v~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
.+++.|||++|++.. .+ .++.+...++... ..........+...........++....+|.|++||+.++++.
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 346789999999742 22 2555555442110 0001111111111112212234455778999999999999987
Q ss_pred hccC
Q 027590 217 HMNH 220 (221)
Q Consensus 217 ~~~~ 220 (221)
..+.
T Consensus 161 ~~~p 164 (286)
T PRK13646 161 AMNP 164 (286)
T ss_pred HhCC
Confidence 7653
No 39
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.80 E-value=6.5e-20 Score=152.58 Aligned_cols=141 Identities=15% Similarity=0.068 Sum_probs=98.2
Q ss_pred eeeeeeeEecCCc----cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---ccccc
Q 027590 77 AKSTNILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRD 148 (221)
Q Consensus 77 ~~~~~~~~~~~~~----~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ 148 (221)
++++|+++.|+.. ++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. .+++.
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA--TVDGFDVVKEPAEARRR 79 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE--EECCEEcccCHHHHHhh
Confidence 5678899999765 7999999999999999999999999999999999998 588999 889988753 34567
Q ss_pred ceeeccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 149 LSFKAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++|++..... ++.+...+.. ..-.........+..... ..+..++....+|.|++||+.++++...++
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG-MEELLDRRVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHhhhhhhcCHHHHHHHHHHHHHhcCC
Confidence 9999998632221 3443332210 000000011111111111 123456678899999999999999876654
No 40
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.5e-20 Score=144.17 Aligned_cols=111 Identities=68% Similarity=1.042 Sum_probs=98.2
Q ss_pred eeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccChHH
Q 027590 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158 (221)
Q Consensus 79 ~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~ 158 (221)
..|+.|+.+.++-.++..|--++|.++||+|.||||||||+.+|+..+...|..+|.+||+++++++++++||..+|+.|
T Consensus 8 atNI~wh~~~v~k~eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~E 87 (207)
T KOG0635|consen 8 ATNITWHESSVTKEERQKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNE 87 (207)
T ss_pred ccceeeecCCccHHHHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhh
Confidence 45778877777777888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc----cceeeehhhhhcccccccchhhHHHHH
Q 027590 159 NIRRIEKIEMP----AVQCCQKEISLRCSWMCHFKCVRQGTQ 196 (221)
Q Consensus 159 ~~~~v~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (221)
+++++++++.+ |.++++++++ +...+++..+
T Consensus 88 NIRRigeVaKLFADag~iciaSlIS-------PYR~dRdacR 122 (207)
T KOG0635|consen 88 NIRRIGEVAKLFADAGVICIASLIS-------PYRKDRDACR 122 (207)
T ss_pred hHHHHHHHHHHHhccceeeeehhcC-------chhccHHHHH
Confidence 99999999988 8899988875 4455555433
No 41
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.80 E-value=4.4e-20 Score=153.64 Aligned_cols=139 Identities=17% Similarity=0.083 Sum_probs=95.4
Q ss_pred eeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc--------
Q 027590 78 KSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG-------- 144 (221)
Q Consensus 78 ~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~-------- 144 (221)
++.|+++.|+. ..+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++...
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV--RVDGTDISKLSEKELAAF 79 (218)
T ss_pred eEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE--EECCEehhhcchhHHHHH
Confidence 46788888875 68999999999999999999999999999999999998 588999 8999887531
Q ss_pred ccccceeeccChHHHHH-HHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 145 LNRDLSFKAEDRVENIR-RIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~~-~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.++.++|++|++..... ++.+...++... .. ........+...... ....++....+|.|++||+.++++...+
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL-GDRLNHYPSELSGGQQQRVAIARALAND 158 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-chhhhcChhhcCHHHHHHHHHHHHHccC
Confidence 24579999998643322 444433331110 00 000001111111111 1234556788999999999999987654
No 42
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.80 E-value=6e-20 Score=153.02 Aligned_cols=139 Identities=13% Similarity=0.053 Sum_probs=95.0
Q ss_pred eeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---ccccccee
Q 027590 78 KSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSF 151 (221)
Q Consensus 78 ~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~ 151 (221)
+++|+++.|+. .++++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.++|
T Consensus 2 ~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA--YINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred EEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEecccchHHHhhhEEE
Confidence 56788888876 78999999999999999999999999999999999998 688999 889988753 34567999
Q ss_pred eccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 152 KAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 152 v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++..... ++.+...... ............+...... .+..++...++|.|++||+.++++...+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGL-TDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 9998532211 3333222210 0000000001111111111 2334566788999999999999877654
No 43
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5.6e-20 Score=159.94 Aligned_cols=142 Identities=15% Similarity=0.036 Sum_probs=99.0
Q ss_pred eeeeeeeEecCC-----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------
Q 027590 77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------- 143 (221)
Q Consensus 77 ~~~~~~~~~~~~-----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------- 143 (221)
+++++++++|+. .++|+++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~~~~~~~ 80 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV--TIGERVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE--EECCEECccccccchH
Confidence 678889988863 46999999999999999999999999999999999998 688999 899988742
Q ss_pred -cccccceeeccChHH-HH-HHHHHHhccccee----eehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 144 -GLNRDLSFKAEDRVE-NI-RRIEKIEMPAVQC----CQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~-~~-~~v~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
.+++.+||++|++.. .. .++.+...++... ..........+...........++....+|.|++||+.++++.
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 81 KPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 345679999998742 22 2565554442110 0000011111111111112233556778999999999999988
Q ss_pred hccC
Q 027590 217 HMNH 220 (221)
Q Consensus 217 ~~~~ 220 (221)
.++.
T Consensus 161 ~~~P 164 (290)
T PRK13634 161 AMEP 164 (290)
T ss_pred HcCC
Confidence 7654
No 44
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.80 E-value=1.2e-19 Score=173.94 Aligned_cols=140 Identities=19% Similarity=0.163 Sum_probs=106.9
Q ss_pred ccccceeeeeeeEecCCc--cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----c
Q 027590 72 QNSTVAKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----G 144 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~--~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~ 144 (221)
+...-++.+|++|+|+.. .+++++||+|++||+++|+|+||||||||+|+|.|++ |+.|+| .+||.|+.+ .
T Consensus 467 ~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I--~~dg~dl~~i~~~~ 544 (709)
T COG2274 467 KLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI--LLDGVDLNDIDLAS 544 (709)
T ss_pred ccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEeHHhcCHHH
Confidence 444568899999999755 6999999999999999999999999999999999999 789999 999999975 6
Q ss_pred ccccceeeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHH---------------HHHHHHhhhcchh
Q 027590 145 LNRDLSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQ---------------RAFTSLHEKGRSR 209 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~ 209 (221)
++++||||+|+..-.-.++.|...++..... ..+. ........++ +.-..+|+|+|||
T Consensus 545 lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~-~e~i------~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 545 LRRQVGYVLQDPFLFSGSIRENIALGNPEAT-DEEI------IEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred HHhheeEEcccchhhcCcHHHHHhcCCCCCC-HHHH------HHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 8999999999987777778887777543221 0000 0011111111 2223489999999
Q ss_pred HHHhhhhhccC
Q 027590 210 VLLGLMIHMNH 220 (221)
Q Consensus 210 ~~~~~~~~~~~ 220 (221)
++++++.-.++
T Consensus 618 lalARaLl~~P 628 (709)
T COG2274 618 LALARALLSKP 628 (709)
T ss_pred HHHHHHhccCC
Confidence 99999876553
No 45
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=5.7e-20 Score=153.34 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=95.3
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccceeec
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSFKA 153 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~v~ 153 (221)
+++|+++.|+..++++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.++|++
T Consensus 2 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 2 EVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA--TVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred EEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEecCcChHHHhhcEEEec
Confidence 5678888898888999999999999999999999999999999999998 688999 889987643 3346799999
Q ss_pred cChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 154 EDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++..... ++.+...... ............+...... ....++...++|.|++||+.++++...+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGL-LEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 98632211 3333222210 0000000001111111111 2334556788999999999999987654
No 46
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.80 E-value=3.9e-20 Score=165.62 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=101.0
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccC--ceEEEEECCccccc--cccccce
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWR--GKLTYILDGDNCRH--GLNRDLS 150 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~--G~i~~~l~g~~~~~--~~~~~ig 150 (221)
-++++++++.|+...+++++||++++||+++|+||||||||||+++|+|++ |++ |+| .++|.++.. ..++.||
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i--~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI--AIADRDLTHAPPHKRGLA 82 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE--EECCEECCCCCHHHCCEE
Confidence 367888999998888999999999999999999999999999999999998 688 999 899998854 2357899
Q ss_pred eeccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 151 FKAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++|+...... ++.+....+. .+-.........+...... ....++...++|.|++||+.++++...++
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~~~~~~LSgGq~QRvaLARAL~~~P 156 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGL-GDAAAHLPAQLSGGMQQRIAIARAIAIEP 156 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-CchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999753322 4444443321 1100001111111111111 12345567789999999999999887654
No 47
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=4.9e-20 Score=153.75 Aligned_cols=139 Identities=15% Similarity=0.083 Sum_probs=95.2
Q ss_pred eeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceee
Q 027590 78 KSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFK 152 (221)
Q Consensus 78 ~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v 152 (221)
++.|+++.|+. ..+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. .++.++|+
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~-~~~~i~~v 78 (220)
T cd03293 2 EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV--LVDGEPVTG-PGPDRGYV 78 (220)
T ss_pred eEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECcc-ccCcEEEE
Confidence 46788888876 68999999999999999999999999999999999998 688999 889988753 45679999
Q ss_pred ccChHHHH-HHHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENI-RRIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~-~~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|++.... .++.+...++.. ...........+...... .+...+....+|.|++||+.++++...++
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~~qrl~la~al~~~p 150 (220)
T cd03293 79 FQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGL-SGFENAYPHQLSGGMRQRVALARALAVDP 150 (220)
T ss_pred ecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-hhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99864222 133333322110 000000000111111111 12344556789999999999999876653
No 48
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=6.3e-20 Score=155.01 Aligned_cols=140 Identities=16% Similarity=0.112 Sum_probs=97.5
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeec
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKA 153 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~ 153 (221)
++++|+++.|+...+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.++|++
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI--LFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECCcCCccccceEEEe
Confidence 67889999998888999999999999999999999999999999999998 688999 889988753 2346799999
Q ss_pred cChHHHHH-HHHHHhccccee--e------ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 154 EDRVENIR-RIEKIEMPAVQC--C------QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++..... ++.+...++... . .........+..... .....++...++|.|++||+.++++...+
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~~ 154 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ-LDWLADRYPAQLSGGQRQRVALARALAVE 154 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcC-ChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 98643221 444443332100 0 000000011111111 12234556678999999999999987654
No 49
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=4.8e-20 Score=160.14 Aligned_cols=142 Identities=19% Similarity=0.135 Sum_probs=97.7
Q ss_pred eeeeeeeEecCC-----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc------c
Q 027590 77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------G 144 (221)
Q Consensus 77 ~~~~~~~~~~~~-----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------~ 144 (221)
+++.++++.|+. .++++++||++++||+++|+|+||||||||+++|+|++ |++|+| +++|.++.. .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI--IIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE--EECCEECCCcCccHHH
Confidence 667889988864 46999999999999999999999999999999999999 688999 899988753 3
Q ss_pred ccccceeeccChHHHH--HHHHHHhccccee--eeh--hhhhcccccccchhh-HHHHHHHHHHHhhhcchhHHHhhhhh
Q 027590 145 LNRDLSFKAEDRVENI--RRIEKIEMPAVQC--CQK--EISLRCSWMCHFKCV-RQGTQRAFTSLHEKGRSRVLLGLMIH 217 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~--~~v~~~~~~g~~~--~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (221)
+++.+||++|++...+ .++.+....+... +.. ............... ....++....+|.|++||+.++++..
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 4578999999974332 2455444332110 000 000000111111111 12234556789999999999999876
Q ss_pred ccC
Q 027590 218 MNH 220 (221)
Q Consensus 218 ~~~ 220 (221)
.++
T Consensus 161 ~~P 163 (287)
T PRK13637 161 MEP 163 (287)
T ss_pred cCC
Confidence 653
No 50
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5e-20 Score=162.88 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=96.9
Q ss_pred cceeeeeeeEecC----------CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc
Q 027590 75 TVAKSTNILWHKN----------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~----------~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~ 143 (221)
++++++|+++.|+ ...++++|||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++..
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i--~~~g~~l~~ 81 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGEL--YYQGQDLLK 81 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEE--EECCEEcCc
Confidence 4677888888774 257999999999999999999999999999999999999 578999 889988753
Q ss_pred -------cccccceeeccChHHHHH---HHHHHhccc-----ceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcch
Q 027590 144 -------GLNRDLSFKAEDRVENIR---RIEKIEMPA-----VQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRS 208 (221)
Q Consensus 144 -------~~~~~ig~v~q~~~~~~~---~v~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (221)
.+++.|+|++|++...+. ++.+..... ...-.........+........+..++...++|+|++|
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q 161 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence 245689999999742211 222222110 00000000111111111111122345556789999999
Q ss_pred hHHHhhhhhccC
Q 027590 209 RVLLGLMIHMNH 220 (221)
Q Consensus 209 ~~~~~~~~~~~~ 220 (221)
|+.++++...+.
T Consensus 162 Rv~iArAL~~~P 173 (327)
T PRK11308 162 RIAIARALMLDP 173 (327)
T ss_pred HHHHHHHHHcCC
Confidence 999999877653
No 51
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=3.5e-20 Score=155.15 Aligned_cols=139 Identities=12% Similarity=0.166 Sum_probs=104.1
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeecc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q 154 (221)
.+++++++.+|++..+++++||++++|++++++|+|||||||.+|+|.|++ |++|+| .++|.+++.....+|||.|+
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I--~~~g~~~~~~~~~rIGyLPE 79 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI--TWNGGPLSQEIKNRIGYLPE 79 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceE--EEcCcchhhhhhhhcccChh
Confidence 367889999999999999999999999999999999999999999999999 689999 89999999988999999999
Q ss_pred ChHHHH-----HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHH-hhhhh
Q 027590 155 DRVENI-----RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLL-GLMIH 217 (221)
Q Consensus 155 ~~~~~~-----~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 217 (221)
+|.-+. ..+.+.+.+.-++-..+...+..|+...+.. ....+.+++||+|++|++.+ +.+.|
T Consensus 80 ERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~-~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 80 ERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-GKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred hhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc-ccccchHHHhhhhhhHHHHHHHHHhc
Confidence 873222 2344444442223222233333444222211 22345678999999999987 44444
No 52
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.4e-20 Score=150.39 Aligned_cols=141 Identities=19% Similarity=0.200 Sum_probs=110.0
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccccc----ccccccee
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH----GLNRDLSF 151 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~----~~~~~ig~ 151 (221)
+++.|+++.|+...+++++|+++++|.+++|+||||||||||+.+++++++ ++|.+ .++|.++.. .+++.++.
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i--~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI--TIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceE--EEeeeecccCChHHHHHHHHH
Confidence 567789999999999999999999999999999999999999999999995 88999 899999975 67888888
Q ss_pred eccChHHHHH-HHHHHhcccceeeehhhhhcccccc-----cchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 152 KAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMC-----HFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 152 v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.-|...-+.+ +|.+++..|++|...-....+.|.. ..-......++.+.+|++|+|||..++...+.+
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQd 153 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD 153 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeecc
Confidence 8888777777 8999999999986532211111100 000112334566778888999998888766653
No 53
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=8.4e-20 Score=157.59 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=100.0
Q ss_pred cceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
+++++.|+++.|+ ...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|.++.. .+++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~~ 80 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV--KVMGREVNAENEKWVRSK 80 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE--EECCEECCCCCHHHHHhh
Confidence 3678899999995 567999999999999999999999999999999999998 688999 899988753 34567
Q ss_pred ceeeccChHHHH-H-HHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 149 LSFKAEDRVENI-R-RIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 149 ig~v~q~~~~~~-~-~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+||++|++...+ . ++.+...++... .. ........+...... ....++....+|.|++||+.++++...+.
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgG~~qrv~laraL~~~p 157 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM-WDFRDKPPYHLSYGQKKRVAIAGVLAMDP 157 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-HHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999974222 2 455544432110 00 000000111111111 23345566789999999999999876543
No 54
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.80 E-value=2.6e-20 Score=154.56 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=94.4
Q ss_pred eeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccChH
Q 027590 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157 (221)
Q Consensus 79 ~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~ 157 (221)
+.|+++.|+..++++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++. ..++.++|++|++.
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~-~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI--RVFGKPLE-KERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE--EECCccHH-HHHhheEEeccccc
Confidence 457788887778999999999999999999999999999999999998 688999 88998775 34567999999864
Q ss_pred HH--H-HHHHHHhcccceee--------ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 158 EN--I-RRIEKIEMPAVQCC--------QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 158 ~~--~-~~v~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.. . .++.+....+.... .........+...... .+..++....+|.|++||+.++++...+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~~qrv~la~al~~~ 150 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGL-SELADRQIGELSGGQQQRVLLARALVQD 150 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCC-HHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 31 1 24554443321100 0000000111111111 1234455677899999999999987654
No 55
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.80 E-value=8.1e-20 Score=151.08 Aligned_cols=140 Identities=13% Similarity=0.055 Sum_probs=96.4
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeecc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKAE 154 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~q 154 (221)
++++++++|++.++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.++|++|
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 2 KTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI--TFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred EEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE--EECCCcccchHHHHhhEEEecC
Confidence 5678888898788999999999999999999999999999999999998 588999 889987753 34567999999
Q ss_pred ChHHHH-HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 155 DRVENI-RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 155 ~~~~~~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++.... .++.+....................... ...+..++...++|.|+++|+.++++...++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV-GLKDSAKKKVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHc-CCHHHHhhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 863221 1333332221100000000000111111 1123456678899999999999999876543
No 56
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.80 E-value=8.9e-20 Score=151.26 Aligned_cols=140 Identities=16% Similarity=0.122 Sum_probs=96.6
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeecc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKAE 154 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~q 154 (221)
+++|+++.|+..++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.++|++|
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v--~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 2 ELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI--YIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred EEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECCcCCcccceEEEEec
Confidence 5678888898788999999999999999999999999999999999998 688999 889988753 22357999999
Q ss_pred ChHHHHH-HHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 155 DRVENIR-RIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 155 ~~~~~~~-~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++..... ++.+...++... .. ........+..... ..+..++....+|.|++||+.++++...++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qr~~laral~~~p 149 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQ-IEHLLDRKPKQLSGGQRQRVALGRAIVREP 149 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHHHHhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 8753322 444443332100 00 00000011111111 123345566789999999999999876553
No 57
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5.2e-20 Score=165.63 Aligned_cols=144 Identities=19% Similarity=0.149 Sum_probs=101.6
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccce
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLS 150 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig 150 (221)
..+++++++++.|+...+++++||++++|++++|+||||||||||+|+|+|+. |++|+| +++|+++.. ..++.+|
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I--~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI--MLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCEECCCCCHHHCCEE
Confidence 44688999999998888999999999999999999999999999999999999 688999 899998854 3457899
Q ss_pred eeccChHHHHH-HHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 151 FKAEDRVENIR-RIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|+||+...... ++.+....+.. .-.........+...... ....++...++|+|++||+.++++...++
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L-~~~~~~~~~~LSgGq~QRVaLARAL~~~P 168 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHM-QEFAKRKPHQLSGGQRQRVALARSLAKRP 168 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99998643222 34444333211 000000000111111111 12345556789999999999999877653
No 58
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.80 E-value=5.6e-20 Score=160.83 Aligned_cols=142 Identities=12% Similarity=0.058 Sum_probs=98.5
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---ccccccee
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSF 151 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~ 151 (221)
+++++|+++.|+...+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.+||
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI--TVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECcccHHHHhhcEEE
Confidence 577889999998888999999999999999999999999999999999998 688999 889987743 34567999
Q ss_pred eccChHHHHH-HHHHHhcc-cc---eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDRVENIR-RIEKIEMP-AV---QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~~~~~~-~v~~~~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++..... ++.+.... +. ............+..... .....++....+|+|++||+.++++...++
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-l~~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-LESKADVRVALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-ChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9998632211 33332221 10 000000000011111111 123345667899999999999999876553
No 59
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.80 E-value=1.3e-19 Score=161.00 Aligned_cols=142 Identities=11% Similarity=0.049 Sum_probs=99.3
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccce
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLS 150 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig 150 (221)
.++++.|+++.|+...+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.+|
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i--~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI--TVLGVPVPARARLARARIG 117 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE--EECCEECCcchHHHhccEE
Confidence 3688999999999889999999999999999999999999999999999998 688999 889998754 3567899
Q ss_pred eeccChHHHHH-HHHHHhcc-cc---eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIR-RIEKIEMP-AV---QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++|++..... ++.+.... +. ............+..... ..+..++.+..+|.|++||+.++++...+
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-L~~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-LESKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 99998532111 23332221 10 000000000001111111 12334556788999999999999977654
No 60
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.80 E-value=6.7e-20 Score=154.90 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=96.8
Q ss_pred eeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------cccc
Q 027590 77 AKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------GLNR 147 (221)
Q Consensus 77 ~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~~~~ 147 (221)
+++.|+++.|+ +.++++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. .+++
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI--LLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEE--EECCEEhhhCCHHHHHHHHh
Confidence 56788888897 778999999999999999999999999999999999999 588999 889988753 1356
Q ss_pred cceeeccChHHHHH-HHHHHhcccceeee------------hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhh
Q 027590 148 DLSFKAEDRVENIR-RIEKIEMPAVQCCQ------------KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 148 ~ig~v~q~~~~~~~-~v~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
.++|++|++..... ++.+...++..... ........+..... ..+..++....+|.|++||+.+++
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVG-LADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcC-cHhhhcCCcccCCHHHHHHHHHHH
Confidence 79999998643322 45554443221100 00000000110111 112234455678889999999999
Q ss_pred hhhcc
Q 027590 215 MIHMN 219 (221)
Q Consensus 215 ~~~~~ 219 (221)
+...+
T Consensus 159 al~~~ 163 (243)
T TIGR02315 159 ALAQQ 163 (243)
T ss_pred HHhcC
Confidence 87654
No 61
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.80 E-value=7e-20 Score=162.20 Aligned_cols=144 Identities=16% Similarity=0.153 Sum_probs=97.6
Q ss_pred cceeeeeeeEecC-------------CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcc
Q 027590 75 TVAKSTNILWHKN-------------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (221)
Q Consensus 75 ~~~~~~~~~~~~~-------------~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~ 140 (221)
.+++++|+++.|+ ...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| +++|.+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I--~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV--AWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEE--EECCEE
Confidence 4677777777774 256899999999999999999999999999999999999 588999 899998
Q ss_pred ccc-------cccccceeeccChHHHH---HHHHHHhcccc------eeeehhhhhcccccccchhhHHHHHHHHHHHhh
Q 027590 141 CRH-------GLNRDLSFKAEDRVENI---RRIEKIEMPAV------QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHE 204 (221)
Q Consensus 141 ~~~-------~~~~~ig~v~q~~~~~~---~~v~~~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 204 (221)
+.. .+++.|+|++|++...+ .++.+....+. ..-..................+..++...++|+
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 753 24568999999973211 13444332210 000000000011111111112344566678999
Q ss_pred hcchhHHHhhhhhccC
Q 027590 205 KGRSRVLLGLMIHMNH 220 (221)
Q Consensus 205 ~~~~~~~~~~~~~~~~ 220 (221)
|++||+.++++...+.
T Consensus 165 G~~QRv~iArAL~~~P 180 (331)
T PRK15079 165 GQCQRIGIARALILEP 180 (331)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999887653
No 62
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.2e-19 Score=157.10 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=100.1
Q ss_pred cceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccc
Q 027590 75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLN 146 (221)
Q Consensus 75 ~~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~ 146 (221)
.++++.|+++.|+. ..+++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|.++.. .++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI--IIDGDLLTEENVWDIR 80 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEECCcCcHHHHH
Confidence 35788999999963 45999999999999999999999999999999999998 688999 899988753 345
Q ss_pred ccceeeccChHHHH-H-HHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 147 RDLSFKAEDRVENI-R-RIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 147 ~~ig~v~q~~~~~~-~-~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+.+||++|++...+ . ++.+....+... .. ........+...... ....++....+|.|++||+.++++...+.
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL-~~~~~~~~~~LSgGq~qrv~lAral~~~p 159 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGM-QDFKEREPARLSGGQKQRVAIAGAVAMRP 159 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCC-HhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 68999999974222 2 555544432110 00 000111111111111 23345566788999999999999876653
No 63
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.80 E-value=5.8e-20 Score=152.15 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=94.7
Q ss_pred eeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccccee
Q 027590 79 STNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLSF 151 (221)
Q Consensus 79 ~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig~ 151 (221)
+.++++.|+. ..+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.++|
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV--LVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEEcccCCHHHHHhhceE
Confidence 4677888876 78999999999999999999999999999999999998 688999 889987753 24567999
Q ss_pred eccChHHHH--HHHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDRVENI--RRIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~~~~~--~~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++...+ .++.+...++... .. ........+...... .+..++....+|.|++||+.++++...++
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGL-EGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCc-HhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999874211 2444443331100 00 000000011111111 12344556789999999999999876543
No 64
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.79 E-value=7.9e-20 Score=146.18 Aligned_cols=111 Identities=50% Similarity=0.783 Sum_probs=94.6
Q ss_pred eEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccChHHHHHH
Q 027590 83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162 (221)
Q Consensus 83 ~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~ 162 (221)
.|+....+...+..+..++|.++|++|+|||||||++.+|...|...|..+|++||+++++++.+++||..++|.+|+++
T Consensus 4 ~w~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRR 83 (197)
T COG0529 4 VWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRR 83 (197)
T ss_pred cccccccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHH
Confidence 33333444445566677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc----cceeeehhhhhcccccccchhhHHHHHHHHH
Q 027590 163 IEKIEMP----AVQCCQKEISLRCSWMCHFKCVRQGTQRAFT 200 (221)
Q Consensus 163 v~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (221)
+++++.+ |.+++.++++ ++...++.+++.+.
T Consensus 84 vaevAkll~daG~iviva~IS-------P~r~~R~~aR~~~~ 118 (197)
T COG0529 84 VAEVAKLLADAGLIVIVAFIS-------PYREDRQMARELLG 118 (197)
T ss_pred HHHHHHHHHHCCeEEEEEeeC-------ccHHHHHHHHHHhC
Confidence 9999998 9999988876 66666766666554
No 65
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.79 E-value=8.8e-20 Score=152.96 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=98.4
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
.++++++|+++.|+..++++++||++++||+++|+||||||||||+++|+|++ |++|++ .++|.++.. .+++.
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL--LFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE--EECCEEcCcCCHHHHHhc
Confidence 34678899999998888999999999999999999999999999999999998 688999 889987643 24567
Q ss_pred ceeeccChHHHHHHHHHHhccccee--eehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAVQC--CQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++|++...-.++.+...++... ..........+............+....+|.|+++|+.++++...+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998642111333332221000 0000000011111111112234556778999999999999987654
No 66
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=9.6e-20 Score=155.71 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=96.0
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccC
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~ 155 (221)
++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ....++|++|+
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~-~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI--TLDGKPVEG-PGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCC-CCCcEEEEeCC
Confidence 56788999998788999999999999999999999999999999999998 688999 889988754 33568999998
Q ss_pred hHHHH-HHHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 156 RVENI-RRIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 156 ~~~~~-~~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+.... .++.+...++. ............+...... ....++....+|.|++||+.++++...+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL-EGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-hhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 63221 13443333211 0000000001111111111 1233456788999999999999987654
No 67
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.79 E-value=6.4e-20 Score=154.37 Aligned_cols=140 Identities=14% Similarity=0.072 Sum_probs=95.5
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc-----cccccee
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG-----LNRDLSF 151 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~-----~~~~ig~ 151 (221)
++.|+++.|+...+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++... .+..++|
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV--LFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred eeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE--EECCEECCCCCHHHHHhcCEEE
Confidence 4678888898778999999999999999999999999999999999998 588999 8899887531 2356999
Q ss_pred eccChHHHHH-HHHHHhcccceee--------------ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 152 KAEDRVENIR-RIEKIEMPAVQCC--------------QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 152 v~q~~~~~~~-~v~~~~~~g~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
++|++..... ++.+...++.... .........+...... ....++....+|.|++||+.++++.
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-ADLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-cchhhCChhhCCHHHHHHHHHHHHH
Confidence 9998643222 3444333211000 0000001111111111 1233456678999999999999987
Q ss_pred hccC
Q 027590 217 HMNH 220 (221)
Q Consensus 217 ~~~~ 220 (221)
..++
T Consensus 159 ~~~p 162 (236)
T cd03219 159 ATDP 162 (236)
T ss_pred hcCC
Confidence 6543
No 68
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=8.5e-20 Score=158.68 Aligned_cols=142 Identities=16% Similarity=0.086 Sum_probs=97.5
Q ss_pred eeeeeeeEecCC-----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------
Q 027590 77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------- 143 (221)
Q Consensus 77 ~~~~~~~~~~~~-----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------- 143 (221)
++++|+++.|+. ..+++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|.++..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV--TVGDIVVSSTSKQKEI 79 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE--EECCEECccccccccH
Confidence 567888888863 25999999999999999999999999999999999998 688999 899988741
Q ss_pred -cccccceeeccChHHHH--HHHHHHhcccceee----ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 144 -GLNRDLSFKAEDRVENI--RRIEKIEMPAVQCC----QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~~~--~~v~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
.+++.+||++|++...+ .++.+....+.... .........+...........++....+|.|++||+.++++.
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 34578999999874222 24554443321100 000000011111111112233455678899999999999987
Q ss_pred hccC
Q 027590 217 HMNH 220 (221)
Q Consensus 217 ~~~~ 220 (221)
.+++
T Consensus 160 ~~~p 163 (288)
T PRK13643 160 AMEP 163 (288)
T ss_pred HhCC
Confidence 7654
No 69
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.79 E-value=9.3e-20 Score=152.92 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=95.4
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----ccccccee
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDLSF 151 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~ig~ 151 (221)
++.|+++.|+..++++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++.. ...+.++|
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI--RLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred EEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE--EECCEECCCCCHHHHHHhCeEE
Confidence 5678888898888999999999999999999999999999999999999 588999 889988753 12457999
Q ss_pred eccChHHHHH-HHHHHhcccceeee-hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 152 KAEDRVENIR-RIEKIEMPAVQCCQ-KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 152 v~q~~~~~~~-~v~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++..... ++.+....+..... ....................++....+|.|+++|+.++++...+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9998643222 33333322110000 00000000010111112334566778999999999999987654
No 70
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6.8e-20 Score=164.49 Aligned_cols=142 Identities=15% Similarity=0.065 Sum_probs=99.0
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceee
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFK 152 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v 152 (221)
.+++.|+++.|++..+++++||++++|++++|+||||||||||+++|+|++ |++|+| .++|+++.. ...+.+||+
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I--~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL--FIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCEECCCCCHhHCCEEEE
Confidence 467889999998888999999999999999999999999999999999998 688999 899998754 234679999
Q ss_pred ccChHHHHH-HHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENIR-RIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~~-~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|+...... ++.+....+.. ...........+...... .+..++...++|.|++||+.++++...+.
T Consensus 81 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~~~~~~~LSgGq~QRvaLAraL~~~P 152 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQL-AHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (369)
T ss_pred eCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCC-hhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 998632211 33333332210 000000001111111111 22345566789999999999999876653
No 71
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=8.8e-20 Score=159.91 Aligned_cols=142 Identities=20% Similarity=0.108 Sum_probs=97.0
Q ss_pred eeeeeeeEecCCc-----cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccc--------
Q 027590 77 AKSTNILWHKNSV-----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR-------- 142 (221)
Q Consensus 77 ~~~~~~~~~~~~~-----~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~-------- 142 (221)
+++.|+++.|+.. .+++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|.++.
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i--~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI--EWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE--EEeceecccccccccc
Confidence 6788999999642 5999999999999999999999999999999999999 688999 77776541
Q ss_pred --------------------ccccccceeeccChHH-HHH-HHHHHhccccee----eehhhhhcccccccchhhHHHHH
Q 027590 143 --------------------HGLNRDLSFKAEDRVE-NIR-RIEKIEMPAVQC----CQKEISLRCSWMCHFKCVRQGTQ 196 (221)
Q Consensus 143 --------------------~~~~~~ig~v~q~~~~-~~~-~v~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~ 196 (221)
...++.|||++|++.. .+. ++.+...++... -.........+...........+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 1245679999998632 222 555544432210 00011111111111122123355
Q ss_pred HHHHHHhhhcchhHHHhhhhhccC
Q 027590 197 RAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+....+|.|++||+.++++...+.
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P 184 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEP 184 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCC
Confidence 667889999999999999877653
No 72
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.79 E-value=2.8e-19 Score=166.96 Aligned_cols=142 Identities=20% Similarity=0.135 Sum_probs=101.0
Q ss_pred ceeeeeeeEecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccce
Q 027590 76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLS 150 (221)
Q Consensus 76 ~~~~~~~~~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig 150 (221)
-++.+|++++|++ .++|+++||++++|+.++|+||||||||||+++|+|++ |++|+| .+||.++.+ .+++.++
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I--~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV--TLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEEhhhHHHHHHhheE
Confidence 4788999999964 56999999999999999999999999999999999999 688999 899988764 5667899
Q ss_pred eeccChHHHHHHHHHHhcccceeee--hhhhhccc-----c-cccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIRRIEKIEMPAVQCCQ--KEISLRCS-----W-MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~~v~~~~~~g~~~~~--~~~~~~~~-----~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
||+|++.-.-.++.+...+|.-... ...+.... + ..........+.+.-..+|+|+|||..++++.-.+
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~ 488 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLAD 488 (529)
T ss_pred EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcC
Confidence 9999986555567776666431100 00000000 0 00001111222222345899999999999987554
No 73
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=8.2e-20 Score=162.49 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=97.1
Q ss_pred eeeeeeeEecC----CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------c
Q 027590 77 AKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------G 144 (221)
Q Consensus 77 ~~~~~~~~~~~----~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~ 144 (221)
++++|++++|+ ..++++++||++++|++++|+||||||||||+|+|+|++ |++|++ .++|.++.. .
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I--~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV--LVDGQDLTALSEKELRK 79 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCEECCcCCHHHHHH
Confidence 56788998886 467999999999999999999999999999999999999 688999 899988753 1
Q ss_pred ccccceeeccChHHHH-HHHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 145 LNRDLSFKAEDRVENI-RRIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~-~~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.++.|||++|++.... .++.+...++. ............+...... .+..++...++|.|++||+.++++...+
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL-~~~~~~~~~~LSgGq~qRv~lAraL~~~ 158 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGL-SDKADRYPAQLSGGQKQRVAIARALASN 158 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 3568999999864222 13444333211 0000000000111111111 1234556778999999999999987665
Q ss_pred C
Q 027590 220 H 220 (221)
Q Consensus 220 ~ 220 (221)
+
T Consensus 159 p 159 (343)
T PRK11153 159 P 159 (343)
T ss_pred C
Confidence 3
No 74
>PRK10908 cell division protein FtsE; Provisional
Probab=99.79 E-value=1e-19 Score=152.00 Aligned_cols=140 Identities=14% Similarity=0.078 Sum_probs=95.9
Q ss_pred eeeeeeeEec-CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------cccc
Q 027590 77 AKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------GLNR 147 (221)
Q Consensus 77 ~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~~~~ 147 (221)
++++|+++.| +...+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. .+++
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI--WFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEcccCChhHHHHHHh
Confidence 5678888888 6678999999999999999999999999999999999998 588999 889988753 1356
Q ss_pred cceeeccChHHHHH-HHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 148 DLSFKAEDRVENIR-RIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 148 ~ig~v~q~~~~~~~-~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.++|++|++..... ++.+...++... .. ........+...... ....++....+|.|++||+.++++...+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGL-LDKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCC-hhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 79999998743221 344433321100 00 000000011111111 1234455678999999999999987654
No 75
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.79 E-value=1.1e-19 Score=149.82 Aligned_cols=140 Identities=11% Similarity=0.114 Sum_probs=96.7
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccceee
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSFK 152 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~v 152 (221)
+++.|++++|++.++++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|.++.. .+++.++|+
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v--~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI--LFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeE--EECCCccccCHHHHHhheEEe
Confidence 56788999998888999999999999999999999999999999999998 688998 899988753 345679999
Q ss_pred ccChHHHH-HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENI-RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|++.... .++.+....+...... ......+...... .+..+.....++.|+++|+.++++...++
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFSPG-AVGITELCRLFSL-EHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcCcc-hHHHHHHHHHcCC-chhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 98754321 1333332221100000 0000111111111 12334556789999999999999876543
No 76
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.79 E-value=1.2e-19 Score=152.07 Aligned_cols=139 Identities=16% Similarity=0.064 Sum_probs=95.3
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-----c-cCceEEEEECCccccc------cc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-----H-WRGKLTYILDGDNCRH------GL 145 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-----~-~~G~i~~~l~g~~~~~------~~ 145 (221)
+++|+++.|+..++++++||++++||+++|+|+||||||||+++|+|++ + .+|++ .++|+++.. .+
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i--~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 2 ELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV--LLDGKDIYDLDVDVLEL 79 (227)
T ss_pred EEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEE--EECCEEhhhcchHHHHH
Confidence 5678898998888999999999999999999999999999999999998 5 67999 899988743 23
Q ss_pred cccceeeccChHHHHHHHHHHhcccceee--eh---hhhhcccccccchhhHHHHHHH--HHHHhhhcchhHHHhhhhhc
Q 027590 146 NRDLSFKAEDRVENIRRIEKIEMPAVQCC--QK---EISLRCSWMCHFKCVRQGTQRA--FTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~~~v~~~~~~g~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~ 218 (221)
++.++|++|++...-.++.+...++.... .. .............. .....+. ..++|.|++||+.++++...
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAAL-WDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCC-ChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 56799999997543224555443321100 00 00000011111111 1122333 37899999999999998765
Q ss_pred c
Q 027590 219 N 219 (221)
Q Consensus 219 ~ 219 (221)
+
T Consensus 159 ~ 159 (227)
T cd03260 159 E 159 (227)
T ss_pred C
Confidence 4
No 77
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.2e-19 Score=160.10 Aligned_cols=144 Identities=17% Similarity=0.137 Sum_probs=99.4
Q ss_pred cceeeeeeeEecCC-----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----
Q 027590 75 TVAKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~-----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----- 143 (221)
++++++|+++.|+. .++++++||++++|++++|+|+||||||||+++|+|++ |++|+| +++|.++..
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I--~i~g~~~~~~~~~~ 97 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI--QVGDIYIGDKKNNH 97 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE--EECCEEcccccccc
Confidence 46888999999964 36999999999999999999999999999999999999 688999 889876532
Q ss_pred ---------------cccccceeeccChHHH-H-HHHHHHhcccceee----ehhhhhcccccccchhhHHHHHHHHHHH
Q 027590 144 ---------------GLNRDLSFKAEDRVEN-I-RRIEKIEMPAVQCC----QKEISLRCSWMCHFKCVRQGTQRAFTSL 202 (221)
Q Consensus 144 ---------------~~~~~ig~v~q~~~~~-~-~~v~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (221)
.+++.+||++|++... + .++.+...++.... .........+............+....+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 177 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL 177 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 2456799999997422 2 25555544432110 0000000111111111112344556779
Q ss_pred hhhcchhHHHhhhhhccC
Q 027590 203 HEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~ 220 (221)
|.|++||+.++++..++.
T Consensus 178 SgGqkqRvaiAraL~~~p 195 (320)
T PRK13631 178 SGGQKRRVAIAGILAIQP 195 (320)
T ss_pred CHHHHHHHHHHHHHHcCC
Confidence 999999999999877653
No 78
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.6e-19 Score=152.29 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=97.9
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~i 149 (221)
++++.|+++.|+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI--VFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE--EECCEecCCCCHHHHHHhCE
Confidence 577889999998888999999999999999999999999999999999999 588999 889988753 235679
Q ss_pred eeeccChHHHHH-HHHHHhcccce-eee-hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 150 SFKAEDRVENIR-RIEKIEMPAVQ-CCQ-KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 150 g~v~q~~~~~~~-~v~~~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+|++|++..... ++.+...++.. ... ........+........+...+....+|.|++||+.++++...+
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 999998643221 44444333211 000 00000000111111112233455678899999999999987654
No 79
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.79 E-value=1.6e-19 Score=154.73 Aligned_cols=140 Identities=14% Similarity=0.042 Sum_probs=99.6
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceee
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFK 152 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v 152 (221)
...++++|+++.|+...+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++. ..++.++|+
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i--~~~g~~~~-~~~~~i~~v 86 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL--LAGTAPLA-EAREDTRLM 86 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE--EECCEEHH-HhhCceEEE
Confidence 45688999999998888999999999999999999999999999999999998 688999 78887764 345679999
Q ss_pred ccChHHHH-HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 153 AEDRVENI-RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 153 ~q~~~~~~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+|++.... .++.+...++... ........+...... ....++....+|.|++||+.++++...+
T Consensus 87 ~q~~~l~~~~tv~enl~~~~~~--~~~~~~~~~l~~~gl-~~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 87 FQDARLLPWKKVIDNVGLGLKG--QWRDAALQALAAVGL-ADRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred ecCccCCCCCcHHHHHHhcccc--hHHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99864222 1444443332110 000000111111111 2234556788999999999999987654
No 80
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.9e-19 Score=155.89 Aligned_cols=143 Identities=15% Similarity=0.137 Sum_probs=100.7
Q ss_pred cceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
+++++.++++.|+. .++++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|.++.. .+++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i--~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI--TVGGMVLSEETVWDVRR 81 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE--EECCEECCcCcHHHHhh
Confidence 36789999999964 56999999999999999999999999999999999998 688999 899998753 3456
Q ss_pred cceeeccChHHHH--HHHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 148 DLSFKAEDRVENI--RRIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 148 ~ig~v~q~~~~~~--~~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
.|||++|++...+ .++.+....+.. ...........+..... .....++....+|.|+++|+.++++...+.
T Consensus 82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g-L~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (279)
T PRK13635 82 QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVG-MEDFLNREPHRLSGGQKQRVAIAGVLALQP 159 (279)
T ss_pred heEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcC-ChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 7999999974222 255555443210 00000010111111111 123455566788999999999999876553
No 81
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.79 E-value=1.2e-19 Score=150.29 Aligned_cols=140 Identities=19% Similarity=0.109 Sum_probs=96.2
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc------cccccce
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------GLNRDLS 150 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------~~~~~ig 150 (221)
+++|+++.|+...+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.++
T Consensus 2 ~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI--IIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred EEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEECCccchhHHHHHhcce
Confidence 4678888898788999999999999999999999999999999999998 588999 889987732 2456799
Q ss_pred eeccChHHHHH-HHHHHhcccce---eee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 151 FKAEDRVENIR-RIEKIEMPAVQ---CCQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~g~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++|++..... ++.+....+.. ... ........+...... ....++...+++.|++||+.++++...++
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~la~al~~~p 154 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGL-ADKADAYPAQLSGGQQQRVAIARALAMNP 154 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-HhHhhhCccccCHHHHHHHHHHHHHhcCC
Confidence 99998743221 34433322110 000 000000111111111 22345666789999999999999876543
No 82
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.79 E-value=2.1e-19 Score=150.22 Aligned_cols=141 Identities=20% Similarity=0.185 Sum_probs=95.8
Q ss_pred eeeeeeeEecCCc----cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------c
Q 027590 77 AKSTNILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------G 144 (221)
Q Consensus 77 ~~~~~~~~~~~~~----~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~ 144 (221)
++++|+++.|+.. ++++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. .
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI--IFDGKDLLKLSRRLRKI 79 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEEccccchhhHHH
Confidence 5678888888754 7999999999999999999999999999999999998 688999 899988753 2
Q ss_pred ccccceeeccChHHHH---HHHHHHhcccce---eee--hhhhhc-ccccccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 145 LNRDLSFKAEDRVENI---RRIEKIEMPAVQ---CCQ--KEISLR-CSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~---~~v~~~~~~g~~---~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
.++.++|++|++...+ .++.+...++.. ... ...... ..+...........++....+|.|++||+.++++
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 3567999999974211 133333322100 000 000000 0111111111223455677899999999999998
Q ss_pred hhcc
Q 027590 216 IHMN 219 (221)
Q Consensus 216 ~~~~ 219 (221)
...+
T Consensus 160 l~~~ 163 (228)
T cd03257 160 LALN 163 (228)
T ss_pred HhcC
Confidence 7654
No 83
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.2e-19 Score=168.63 Aligned_cols=147 Identities=17% Similarity=0.168 Sum_probs=105.2
Q ss_pred ccccceeeeeeeEecC---CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----
Q 027590 72 QNSTVAKSTNILWHKN---SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~~---~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---- 143 (221)
.+...++.+|++|+|. +.++++|+||+|++||+++|+||||+||||++.+|.+++ |++|+| .+||.++.+
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I--llDG~~i~~~~~~ 538 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI--LLDGVPISDINHK 538 (716)
T ss_pred cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE--EECCeehhhcCHH
Confidence 5667899999999996 456999999999999999999999999999999999999 899999 999999975
Q ss_pred cccccceeeccChHHHHHHHHHHhcccceeee-------hhhhhccccc-ccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 144 GLNRDLSFKAEDRVENIRRIEKIEMPAVQCCQ-------KEISLRCSWM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 144 ~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
.++++||+|.|+|--.-.++.|....|.-... +-......+. ...+.=...+.++=.++++|+|||.+++++
T Consensus 539 ~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARA 618 (716)
T KOG0058|consen 539 YLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARA 618 (716)
T ss_pred HHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHH
Confidence 67899999999984444445554444332100 0000000000 000111122333345889999999999998
Q ss_pred hhccC
Q 027590 216 IHMNH 220 (221)
Q Consensus 216 ~~~~~ 220 (221)
.-.++
T Consensus 619 Llr~P 623 (716)
T KOG0058|consen 619 LLRNP 623 (716)
T ss_pred HhcCC
Confidence 86654
No 84
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.79 E-value=1.4e-19 Score=152.91 Aligned_cols=140 Identities=17% Similarity=0.125 Sum_probs=97.1
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc------cccccc
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------GLNRDL 149 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------~~~~~i 149 (221)
++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.+
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL--IVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECCcCChhHHHHhhce
Confidence 56788999898788999999999999999999999999999999999998 588999 899988753 235679
Q ss_pred eeeccChHHHHH-HHHHHhccccee---e--ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 150 SFKAEDRVENIR-RIEKIEMPAVQC---C--QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 150 g~v~q~~~~~~~-~v~~~~~~g~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+|++|++..... ++.+...++... . .........+...... ....++....+|.|+++|+.++++...+
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL-AERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-hHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 999998643221 343333221100 0 0000000111111111 2334556678999999999999987654
No 85
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.7e-19 Score=152.61 Aligned_cols=141 Identities=16% Similarity=0.120 Sum_probs=95.8
Q ss_pred eeeeeeEecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccccee
Q 027590 78 KSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLSF 151 (221)
Q Consensus 78 ~~~~~~~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig~ 151 (221)
++++++++|+. ..+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.++|
T Consensus 2 ~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 2 EFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI--FIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred EEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCeEcCcCChHHhhcceEE
Confidence 46788888877 78999999999999999999999999999999999998 588999 899988753 23567999
Q ss_pred eccChHHHH-HHHHHHhcccc----eeeehhhhhcccccccchhhH-HHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDRVENI-RRIEKIEMPAV----QCCQKEISLRCSWMCHFKCVR-QGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~~~~~-~~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++.... .++.+....+. ............+........ ....+...++|.|++||+.++++...+.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 999863322 13333322210 000000000111111111111 2345667889999999999999876543
No 86
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.79 E-value=1.7e-19 Score=151.41 Aligned_cols=139 Identities=15% Similarity=0.188 Sum_probs=95.1
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----c-cccccee
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----G-LNRDLSF 151 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~-~~~~ig~ 151 (221)
++.|+++.|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. . .++.++|
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 2 RAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI--LLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred eEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEecccCCHhHHHhccEEE
Confidence 5678888998888999999999999999999999999999999999998 688999 889987643 1 2356999
Q ss_pred eccChHHHHH-HHHHHhcccce--eee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 152 KAEDRVENIR-RIEKIEMPAVQ--CCQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 152 v~q~~~~~~~-~v~~~~~~g~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++..... ++.+...+... ... ........+...... .+..++....+|.|++||+.++++...+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHI-THLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-hhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9998642221 33333322110 000 000000111111111 2334556778999999999999987654
No 87
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.79 E-value=2.5e-19 Score=154.01 Aligned_cols=145 Identities=17% Similarity=0.138 Sum_probs=96.1
Q ss_pred ccceeeeeeeEecC---------CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc
Q 027590 74 STVAKSTNILWHKN---------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~---------~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~ 143 (221)
+++++++|++++|+ ..++++++||++++|++++|+||||||||||+++|+|++ |++|+| .++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~ 79 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL--LIDDHPLHF 79 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEE--EECCEECCC
Confidence 45678889998885 246999999999999999999999999999999999999 688999 889988753
Q ss_pred ----cccccceeeccChHHHH---HHHHHHhccc-----ceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHH
Q 027590 144 ----GLNRDLSFKAEDRVENI---RRIEKIEMPA-----VQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVL 211 (221)
Q Consensus 144 ----~~~~~ig~v~q~~~~~~---~~v~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (221)
..++.++|++|++...+ .++.+..... ...............................+|.|++||+.
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 23457999999864211 1233322210 00000000000111111111122234456789999999999
Q ss_pred HhhhhhccC
Q 027590 212 LGLMIHMNH 220 (221)
Q Consensus 212 ~~~~~~~~~ 220 (221)
++++...+.
T Consensus 160 laral~~~p 168 (267)
T PRK15112 160 LARALILRP 168 (267)
T ss_pred HHHHHHhCC
Confidence 999876553
No 88
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.1e-19 Score=156.03 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=97.5
Q ss_pred ceeeeeeeEecCC-----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc------
Q 027590 76 VAKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------ 143 (221)
Q Consensus 76 ~~~~~~~~~~~~~-----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------ 143 (221)
.+++.|+++.|+. ..+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~ 79 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI--TIAGYHITPETGNKN 79 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEECccccccch
Confidence 3567889998963 46999999999999999999999999999999999998 688999 899988742
Q ss_pred --cccccceeeccChHH-HH-HHHHHHhccccee--e--ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 144 --GLNRDLSFKAEDRVE-NI-RRIEKIEMPAVQC--C--QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~-~~-~~v~~~~~~g~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
..+..++|++|++.. .. .++.+....+... . .........+............+....+|.|++||+.++++
T Consensus 80 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 80 LKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHH
Confidence 234679999999732 22 1444443322110 0 00011111111111111123455577899999999999998
Q ss_pred hhccC
Q 027590 216 IHMNH 220 (221)
Q Consensus 216 ~~~~~ 220 (221)
...++
T Consensus 160 l~~~p 164 (287)
T PRK13641 160 MAYEP 164 (287)
T ss_pred HHcCC
Confidence 76543
No 89
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.79 E-value=1.5e-19 Score=152.48 Aligned_cols=141 Identities=13% Similarity=0.148 Sum_probs=95.7
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccceee
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSFK 152 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~v 152 (221)
+++.|+++.|++..+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ...+.++|+
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI--SVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE--EECCEEcccCChhhhhhEEEe
Confidence 56788898898888999999999999999999999999999999999998 688999 889987743 223579999
Q ss_pred ccChHHHH-HHHHHHhcccce--eee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENI-RRIEKIEMPAVQ--CCQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~-~~v~~~~~~g~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|++.... .++.+....... ... ........+..... .....++....+|.|++||+.++++...++
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLG-LAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-ChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99863211 133332222100 000 00000011111111 122345567789999999999999876553
No 90
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.6e-19 Score=149.81 Aligned_cols=141 Identities=19% Similarity=0.124 Sum_probs=94.4
Q ss_pred ceeeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc------
Q 027590 76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG------ 144 (221)
Q Consensus 76 ~~~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~------ 144 (221)
+++++++++.|+. ..+++++||++++||+++|+||||||||||+++|+|++ |++|++ +++|+++...
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV--IFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEEcCcCCHHHHH
Confidence 5788899998864 46999999999999999999999999999999999998 688999 8999887531
Q ss_pred -c-cccceeeccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhh
Q 027590 145 -L-NRDLSFKAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIH 217 (221)
Q Consensus 145 -~-~~~ig~v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (221)
+ ++.++|++|++..... ++.+...++. ................... .+..++....+|.|++||+.++++..
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LSgG~~qrl~la~al~ 161 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL-EHRANHRPSELSGGERQRVAIARALV 161 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chhhhCChhhCCHHHHHHHHHHHHHh
Confidence 1 2579999998632111 2333222110 0000000000011111111 12234556789999999999998776
Q ss_pred cc
Q 027590 218 MN 219 (221)
Q Consensus 218 ~~ 219 (221)
.+
T Consensus 162 ~~ 163 (233)
T PRK11629 162 NN 163 (233)
T ss_pred cC
Confidence 54
No 91
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3.4e-19 Score=143.71 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=84.5
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccceeec
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSFKA 153 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~v~ 153 (221)
++.++++.|+..++++++||++++||+++|+|+||||||||+++|+|++ |.+|++ .++|.++.. ..++.++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI--KVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEEcccchHhhhccEEEEe
Confidence 4677888887778999999999999999999999999999999999998 588999 889987753 3456799999
Q ss_pred cChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++..... ++.+.. . ++.|+++|+.++++...++
T Consensus 80 q~~~~~~~~tv~~~~--------------------------------~-LS~G~~qrv~laral~~~p 114 (173)
T cd03230 80 EEPSLYENLTVRENL--------------------------------K-LSGGMKQRLALAQALLHDP 114 (173)
T ss_pred cCCccccCCcHHHHh--------------------------------h-cCHHHHHHHHHHHHHHcCC
Confidence 98641110 111110 0 8889999999988776553
No 92
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.78 E-value=2.6e-19 Score=158.91 Aligned_cols=123 Identities=22% Similarity=0.304 Sum_probs=94.5
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc-------cccccceeeccChHHHH
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNRDLSFKAEDRVENI 160 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~-------~~~~~ig~v~q~~~~~~ 160 (221)
...+++++||+.++|+.++|+|+||||||||.++|.+++++.|.| .|+|+++.. .+++++..|||||.-.+
T Consensus 299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I--~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEI--RFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceE--EECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 467899999999999999999999999999999999999988999 999999864 57889999999984433
Q ss_pred --H-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHH--------------HHhhhcchhHHHhhhhhccC
Q 027590 161 --R-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFT--------------SLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 161 --~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~l~~~~~~~~~~~~~~~~~~ 220 (221)
+ +|+++..-|..+...-.+ .....+++.++++ ++|+|+|||.+++++.-.++
T Consensus 377 sPRmtV~qII~EGL~vh~~~ls--------~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP 445 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEPKLS--------AAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKP 445 (534)
T ss_pred CcccCHHHHhhhhhhhcCCCCC--------HHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCC
Confidence 2 678877777665432111 1122233344443 46779999999999876543
No 93
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.2e-19 Score=152.50 Aligned_cols=140 Identities=16% Similarity=0.063 Sum_probs=95.5
Q ss_pred eeeeeeeEecCCc----cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------c
Q 027590 77 AKSTNILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------G 144 (221)
Q Consensus 77 ~~~~~~~~~~~~~----~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~ 144 (221)
+++.|++++|+.. ++++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. .
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV--LVDGTDLTLLSGKELRK 79 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEEcccCCHHHHHH
Confidence 5678888889765 8999999999999999999999999999999999999 578999 899988753 1
Q ss_pred ccccceeeccChHHHH-HHHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 145 LNRDLSFKAEDRVENI-RRIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~-~~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.++.++|++|++.... .++.+....+. ............+...... .+..++....+|.|++||+.++++...+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGL-EDKADAYPAQLSGGQKQRVGIARALANN 158 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-hhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 2567999999864221 13333322210 0000000000111111111 2334556778999999999999876654
No 94
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=6e-20 Score=153.66 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=77.8
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----ccccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~ 148 (221)
.++++++++++||...++++|||++++||+++|+||||||||||+++|+|++ |++|++ +|+|+++.. -.+..
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v--~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV--IFRGRDITGLPPHRIARLG 80 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceE--EECCcccCCCCHHHHHhcc
Confidence 4678899999999999999999999999999999999999999999999999 688999 899999975 23445
Q ss_pred ceeeccChHHHHH-HHHHHhcc
Q 027590 149 LSFKAEDRVENIR-RIEKIEMP 169 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~ 169 (221)
|+..||+..-.-. +|.|.+..
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~v 102 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAV 102 (250)
T ss_pred ceeecccccccCCCcHHHHHHH
Confidence 7778998743332 45555544
No 95
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.78 E-value=1.3e-19 Score=153.72 Aligned_cols=141 Identities=16% Similarity=0.091 Sum_probs=95.2
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-cc-----CceEEEEECCccccc------c
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW-----RGKLTYILDGDNCRH------G 144 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~-----~G~i~~~l~g~~~~~------~ 144 (221)
++++|+++.|+...+++++||++++||+++|+|+||||||||+++|+|++ |+ +|++ .++|+++.. .
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i--~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV--LFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEE--EECCEEccccccchHH
Confidence 56788999998888999999999999999999999999999999999998 56 8999 889988753 2
Q ss_pred ccccceeeccChHHHHHHHHHHhcccc-----eeeehhhhhcccccccchhh---HHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 145 LNRDLSFKAEDRVENIRRIEKIEMPAV-----QCCQKEISLRCSWMCHFKCV---RQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~~~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
.++.++|++|++.....++.+...++. ............+....... .....+....+|.|++||+.++++.
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 356799999986321122333222210 00000000000000011111 1234555678999999999999987
Q ss_pred hcc
Q 027590 217 HMN 219 (221)
Q Consensus 217 ~~~ 219 (221)
..+
T Consensus 160 ~~~ 162 (247)
T TIGR00972 160 AVE 162 (247)
T ss_pred hcC
Confidence 654
No 96
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.2e-19 Score=153.03 Aligned_cols=139 Identities=15% Similarity=0.114 Sum_probs=94.1
Q ss_pred eeeeeeEecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------ccccc
Q 027590 78 KSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------GLNRD 148 (221)
Q Consensus 78 ~~~~~~~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~~~~~ 148 (221)
+++|+++.|+. .++++++||++.+|++++|+||||||||||+++|+|++ |++|++ .++|.++.. .+++.
T Consensus 2 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV--LIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred EEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE--EECCEeccccCHhHHHHHHhc
Confidence 46788888976 78999999999999999999999999999999999998 588999 889988753 23567
Q ss_pred ceeeccChHHHH-HHHHHHhcccceee------------ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 149 LSFKAEDRVENI-RRIEKIEMPAVQCC------------QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 149 ig~v~q~~~~~~-~~v~~~~~~g~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
++|++|++.... .++.+...++.... .........+...... .....+...++|.|++||+.++++
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~la~a 158 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-LDKAYQRADQLSGGQQQRVAIARA 158 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-hhhhCCCcccCCHHHHHHHHHHHH
Confidence 999999864322 14444433321100 0000000000001111 122334456788999999999997
Q ss_pred hhcc
Q 027590 216 IHMN 219 (221)
Q Consensus 216 ~~~~ 219 (221)
...+
T Consensus 159 l~~~ 162 (241)
T cd03256 159 LMQQ 162 (241)
T ss_pred HhcC
Confidence 7654
No 97
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.78 E-value=1.9e-19 Score=148.45 Aligned_cols=138 Identities=19% Similarity=0.103 Sum_probs=94.5
Q ss_pred eeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--------cccccce
Q 027590 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------GLNRDLS 150 (221)
Q Consensus 80 ~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------~~~~~ig 150 (221)
+|+++.|++.++++++||++++||+++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.++
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQV--YLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEE--EECCEEccccchhhHHHHHHhCee
Confidence 46778888778999999999999999999999999999999999998 688999 899988531 2356799
Q ss_pred eeccChHHHH-HHHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 151 FKAEDRVENI-RRIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 151 ~v~q~~~~~~-~~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++|++.... .++.+...++.. ...........+...... .+..++...++|.|+++|+.++++...++
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~lS~G~~qr~~laral~~~p 153 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-NLKLKQKIYELSGGEQQRVALARAILKDP 153 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCc-hhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999865432 244443332110 000000000111111111 22345567889999999999999876653
No 98
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.78 E-value=1.6e-19 Score=157.82 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=98.1
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccceee
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSFK 152 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~v 152 (221)
+++.+++++|++..+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|.++.. .+++.+||+
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i--~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV--QVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEcccChHHHHhceEEe
Confidence 67889999998889999999999999999999999999999999999998 688999 889988754 345679999
Q ss_pred ccChHHHHH-HHHHHhcc-----cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENIR-RIEKIEMP-----AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~~-~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|++..... ++.+.... +. +................. ....++....+|.|++||+.++++...++
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGM-KGQLLKQRVEEMIELVGL-RPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCC-chHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 998632211 23333221 10 000000101111111111 22345667899999999999999876543
No 99
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.78 E-value=1.6e-19 Score=155.36 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=97.5
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------cc
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------GL 145 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~~ 145 (221)
+++++++|+++.|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI--LFDGENIPAMSRSRLYTV 82 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEEccccChhhHHHH
Confidence 34688899999998888999999999999999999999999999999999998 688999 889987753 13
Q ss_pred cccceeeccChHHHHH-HHHHHhccccee---eeh--hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 146 NRDLSFKAEDRVENIR-RIEKIEMPAVQC---CQK--EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~~-~v~~~~~~g~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++.++|++|++..... ++.+...++... ... .............. ....++....+|.|++||+.++++...+
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LSgGq~qrv~laral~~~ 161 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGL-RGAAKLMPSELSGGMARRAALARAIALE 161 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCC-hhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 4679999998632211 333332221100 000 00000000001111 1234455678999999999999987654
No 100
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.78 E-value=2.1e-19 Score=149.78 Aligned_cols=141 Identities=18% Similarity=0.127 Sum_probs=94.5
Q ss_pred eeeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc-------
Q 027590 77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG------- 144 (221)
Q Consensus 77 ~~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~------- 144 (221)
+++.|+++.|+. .++++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++...
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV--LFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEEhhhcCHhHHHH
Confidence 567888888864 56999999999999999999999999999999999998 588999 8899887531
Q ss_pred c-cccceeeccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 145 L-NRDLSFKAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 145 ~-~~~ig~v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
+ ++.++|++|++..... ++.+...++. ............+...... ....++....+|.|++||+.++++...
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~laral~~ 158 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL-EHRINHRPSELSGGERQRVAIARALVN 158 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-hhhhhCChhhCCHHHHHHHHHHHHHhC
Confidence 1 2579999998632211 3333322210 0000000000111111111 123455667899999999999998765
Q ss_pred cC
Q 027590 219 NH 220 (221)
Q Consensus 219 ~~ 220 (221)
++
T Consensus 159 ~p 160 (221)
T TIGR02211 159 QP 160 (221)
T ss_pred CC
Confidence 43
No 101
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.9e-19 Score=153.19 Aligned_cols=144 Identities=15% Similarity=0.150 Sum_probs=96.0
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc------ccCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL------HWRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l------~~~G~i~~~l~g~~~~~---- 143 (221)
.+++++.|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~i~~~~~~ 81 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI--LLDGENIYDPHVD 81 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE--EECCEEccccccC
Confidence 45688899999998888999999999999999999999999999999999985 257999 899988742
Q ss_pred --cccccceeeccChHHHHHHHHHHhcccceee---e--hhhhhcccccccchh---hHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 --GLNRDLSFKAEDRVENIRRIEKIEMPAVQCC---Q--KEISLRCSWMCHFKC---VRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~---~--~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
.+++.++|++|++.....++.+...++.... . ........+...... ......+....+|.|++||+.++
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 161 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 2356799999986322123333332211000 0 000000000000000 01123444567899999999999
Q ss_pred hhhhcc
Q 027590 214 LMIHMN 219 (221)
Q Consensus 214 ~~~~~~ 219 (221)
++...+
T Consensus 162 ral~~~ 167 (253)
T PRK14242 162 RALAVE 167 (253)
T ss_pred HHHhcC
Confidence 987654
No 102
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.9e-19 Score=153.03 Aligned_cols=140 Identities=15% Similarity=0.132 Sum_probs=94.7
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc------cccccc
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------GLNRDL 149 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------~~~~~i 149 (221)
+++.|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.+
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV--LWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEE--EECCEEcccccCCHHHHHhhe
Confidence 56789999998888999999999999999999999999999999999998 688999 899998741 234679
Q ss_pred eeeccChHHHH--HHHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 150 SFKAEDRVENI--RRIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 150 g~v~q~~~~~~--~~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+|++|++.... ..+.+....+.. ...........+..... .....++....+|.|++||+.++++...+
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~~qrl~laraL~~~ 154 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD-AQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHhHhcCCchhCCHHHHHHHHHHHHHHcC
Confidence 99999864211 123332222100 00000000000110101 11223445678899999999999987654
No 103
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.4e-19 Score=155.32 Aligned_cols=143 Identities=16% Similarity=0.200 Sum_probs=98.7
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
...+++.|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. .+++.
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV--WLDGEHIQHYASKEVARR 82 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE--EECCEEhhhCCHHHHhhh
Confidence 34678899999998888999999999999999999999999999999999998 578999 889988743 33467
Q ss_pred ceeeccChHHHH-HHHHHHhcccceeeeh--------hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENI-RRIEKIEMPAVQCCQK--------EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~-~~v~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++|++.... .++.+....+...... ............. ..+..++....+|.|++||+.++++...+
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATG-ITHLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcC-CHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 999999864321 1344433332111000 0000000010111 11234555677888999999999987654
No 104
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.1e-19 Score=154.48 Aligned_cols=144 Identities=19% Similarity=0.169 Sum_probs=99.5
Q ss_pred ccceeeeeeeEecCC------ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---
Q 027590 74 STVAKSTNILWHKNS------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~------~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--- 143 (221)
.+++++.|++++|+. ..+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~i~g~~i~~~~~ 79 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV--YVDGLDTSDEEN 79 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEecccccc
Confidence 346888999999963 46999999999999999999999999999999999998 588999 899988753
Q ss_pred --cccccceeeccChHHHH--HHHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 144 --GLNRDLSFKAEDRVENI--RRIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~--~~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
.+++.+||++|++...+ .++.+....+.. .-.........+..... ..+..++...++|.|++||+.++++
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g-L~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVG-MYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCC-CHhHhhCCcccCCHHHHHHHHHHHH
Confidence 24567999999975322 134443333210 00000000011111111 1234455678899999999999998
Q ss_pred hhccC
Q 027590 216 IHMNH 220 (221)
Q Consensus 216 ~~~~~ 220 (221)
...++
T Consensus 159 l~~~p 163 (280)
T PRK13633 159 LAMRP 163 (280)
T ss_pred HHcCC
Confidence 76553
No 105
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.78 E-value=2.8e-19 Score=148.30 Aligned_cols=139 Identities=15% Similarity=0.080 Sum_probs=93.9
Q ss_pred eeeeeeEecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------ccccc
Q 027590 78 KSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------GLNRD 148 (221)
Q Consensus 78 ~~~~~~~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~~~~~ 148 (221)
++.|+++.|+. ..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.
T Consensus 2 ~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 2 EFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI--RVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred EEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEEcccCCHHHHHHHHHh
Confidence 46788888854 57999999999999999999999999999999999998 688999 889987743 23467
Q ss_pred ceeeccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++|++..... ++.+....+. ............+..... .....++....+|.|++||+.++++...+
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVG-LSHKHRALPAELSGGEQQRVAIARAIVNS 154 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHhhCChhhcCHHHHHHHHHHHHHHcC
Confidence 9999998643321 3333332211 000000000001111111 11233455678999999999999987654
No 106
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.78 E-value=2.4e-19 Score=147.43 Aligned_cols=140 Identities=12% Similarity=0.020 Sum_probs=94.1
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccceeec
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSFKA 153 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~v~ 153 (221)
++.++++.|+...+++++||++.+|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 2 AARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEV--RWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred EEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEE--EECCEEcccchHHhhhheEEec
Confidence 4678888888888999999999999999999999999999999999998 688999 899987653 2346799999
Q ss_pred cChHHHH-HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENI-RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|+..... .++.+...+..............+..... ..+..++....+|.|+++|+.++++...++
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVG-LTGFEDLPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcC-CHHHhcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 8742211 12222222110000000000001111111 122345567889999999999999876653
No 107
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.1e-19 Score=154.73 Aligned_cols=142 Identities=16% Similarity=0.137 Sum_probs=100.0
Q ss_pred cceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc------ccc
Q 027590 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------GLN 146 (221)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------~~~ 146 (221)
++++++|+++.|+ ...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|.++.. .++
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i--~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI--LFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEE--EECCEECCCCcchHHHHH
Confidence 4688999999995 577999999999999999999999999999999999998 688999 899988731 345
Q ss_pred ccceeeccChHHHH--HHHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 147 RDLSFKAEDRVENI--RRIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 147 ~~ig~v~q~~~~~~--~~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+.+||++|++...+ .++.+....+.. +................ .....++....+|.|++||+.++++...+
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-L~~~~~~~~~~LS~G~~qrl~laraL~~~ 159 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTG-IEHLKDKPTHCLSFGQKKRVAIAGVLVME 159 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCC-ChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 78999999974222 255554443211 00000000011111111 12334566788999999999999987654
No 108
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.78 E-value=1.7e-19 Score=153.13 Aligned_cols=141 Identities=15% Similarity=0.080 Sum_probs=96.0
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----------
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----------- 143 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----------- 143 (221)
++++.|+++.|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI--RVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE--EECCEEccccccccchhhHH
Confidence 577889999998778999999999999999999999999999999999998 588999 889987642
Q ss_pred -cccccceeeccChHHHH-HHHHHHhcccce---eee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 144 -GLNRDLSFKAEDRVENI-RRIEKIEMPAVQ---CCQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~~~-~~v~~~~~~g~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
..++.++|++|++.... .++.+...++.. ... ........+...... ....++....+|.|++||+.++++.
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LS~Gq~qrv~la~al 159 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL-AGKETSYPRRLSGGQQQRVAIARAL 159 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-cchhhCChhhCChHHHHHHHHHHHH
Confidence 23457999999863221 133333222100 000 000000001101111 1223455678999999999999987
Q ss_pred hcc
Q 027590 217 HMN 219 (221)
Q Consensus 217 ~~~ 219 (221)
..+
T Consensus 160 ~~~ 162 (250)
T PRK11264 160 AMR 162 (250)
T ss_pred hcC
Confidence 654
No 109
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.2e-19 Score=153.61 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=99.1
Q ss_pred cceeeeeeeEecC--CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~--~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
.+++++|+++.|+ ..++++++||++++|++++|+||||||||||+++|+|++ |++|+| .++|.++.. .+++
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I--~~~g~~i~~~~~~~~~~ 83 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI--KIDGITISKENLKEIRK 83 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEecCcCCHHHHhc
Confidence 3678899999994 567999999999999999999999999999999999998 588999 899988753 3466
Q ss_pred cceeeccChHHHH--HHHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 148 DLSFKAEDRVENI--RRIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 148 ~ig~v~q~~~~~~--~~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.++|++|++...+ .++.+...++... .. ........+..... .....++....+|.|++||+.++++...+
T Consensus 84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (271)
T PRK13632 84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVG-MEDYLDKEPQNLSGGQKQRVAIASVLALN 160 (271)
T ss_pred ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcC-CHHHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 7999999974222 2555554432110 00 00000000110111 12234555678899999999999987654
No 110
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.3e-19 Score=152.68 Aligned_cols=144 Identities=17% Similarity=0.088 Sum_probs=97.8
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-c-----CceEEEEECCcccc--c---
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-W-----RGKLTYILDGDNCR--H--- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~-----~G~i~~~l~g~~~~--~--- 143 (221)
.+++++|+++.|+..++++++||++++||+++|+|+||||||||+++|+|+++ + +|++ .++|+++. .
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i--~~~g~~i~~~~~~~ 80 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV--RLFGRNIYSPDVDP 80 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE--EECCEEccccccCh
Confidence 46788999999988889999999999999999999999999999999999984 2 8999 89998874 1
Q ss_pred -cccccceeeccChHHHHH-HHHHHhccccee------eehhhhhcccccccchh---hHHHHHHHHHHHhhhcchhHHH
Q 027590 144 -GLNRDLSFKAEDRVENIR-RIEKIEMPAVQC------CQKEISLRCSWMCHFKC---VRQGTQRAFTSLHEKGRSRVLL 212 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~~~~-~v~~~~~~g~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 212 (221)
.+++.++|++|++..... ++.+....+... -.........+...... ......+....+|.|++||+.+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI 160 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence 245679999998643222 344433321100 00000000000000000 0122345577899999999999
Q ss_pred hhhhhccC
Q 027590 213 GLMIHMNH 220 (221)
Q Consensus 213 ~~~~~~~~ 220 (221)
+++...++
T Consensus 161 aral~~~p 168 (253)
T PRK14267 161 ARALAMKP 168 (253)
T ss_pred HHHHhcCC
Confidence 99876653
No 111
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.78 E-value=5e-19 Score=151.20 Aligned_cols=145 Identities=15% Similarity=0.101 Sum_probs=97.7
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcc-----ccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN-----CRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~-----~~~---- 143 (221)
.+++++.|+++.|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|++ +..
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV--HYRMRDGQLRDLYALSEA 81 (258)
T ss_pred CceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE--EECCccccccccccCCHH
Confidence 34688999999998788999999999999999999999999999999999998 688999 889987 542
Q ss_pred c----ccccceeeccChHHHH-------HHHHHHh-cccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHH
Q 027590 144 G----LNRDLSFKAEDRVENI-------RRIEKIE-MPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVL 211 (221)
Q Consensus 144 ~----~~~~ig~v~q~~~~~~-------~~v~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (221)
. .++.++|++|++...+ ..+.+.. ..+.............+............+....+|.|++||+.
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~ 161 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence 1 2456999999974211 1122110 01100000000000111111111122345667889999999999
Q ss_pred HhhhhhccC
Q 027590 212 LGLMIHMNH 220 (221)
Q Consensus 212 ~~~~~~~~~ 220 (221)
++++...++
T Consensus 162 laral~~~p 170 (258)
T PRK11701 162 IARNLVTHP 170 (258)
T ss_pred HHHHHhcCC
Confidence 999876653
No 112
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.6e-19 Score=148.31 Aligned_cols=139 Identities=15% Similarity=0.113 Sum_probs=95.0
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccceeec
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSFKA 153 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~v~ 153 (221)
+++++++.|+..++++++||++++| +++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.++|++
T Consensus 2 ~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 2 QLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI--RIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred EEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE--EECCCccccchHHHHhheEEec
Confidence 5678888898778999999999999 99999999999999999999998 688999 889987753 3456799999
Q ss_pred cChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++..... ++.+...... ............+...... ....+....++|.|+++|+.++++...++
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~la~al~~~p 149 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNL-GDRAKKKIGSLSGGMRRRVGIAQALVGDP 149 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-HHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 98643221 3333322210 0000000000111111111 12345567889999999999999876653
No 113
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=8.3e-19 Score=141.16 Aligned_cols=77 Identities=26% Similarity=0.359 Sum_probs=66.5
Q ss_pred eeeeeeEecCCc--cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccce
Q 027590 78 KSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 78 ~~~~~~~~~~~~--~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
++.++++.|+.. .+++++||++++|++++|+||||||||||+++|+|++ |.+|++ +++|.++.. .+++.++
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 2 EFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI--LIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE--EECCEEhhhcCHHHHHhhEE
Confidence 467888888765 7999999999999999999999999999999999998 588999 899987753 3456789
Q ss_pred eeccCh
Q 027590 151 FKAEDR 156 (221)
Q Consensus 151 ~v~q~~ 156 (221)
|++|++
T Consensus 80 ~~~~~~ 85 (171)
T cd03228 80 YVPQDP 85 (171)
T ss_pred EEcCCc
Confidence 999886
No 114
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=5.2e-19 Score=156.34 Aligned_cols=143 Identities=16% Similarity=0.149 Sum_probs=95.2
Q ss_pred ceeeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCceEEEEECCccccc---
Q 027590 76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-----WRGKLTYILDGDNCRH--- 143 (221)
Q Consensus 76 ~~~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-----~~G~i~~~l~g~~~~~--- 143 (221)
+++++|+++.|+. ..++++|||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|+++..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i--~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKL--EFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEE--EECCEECCcCCH
Confidence 4678888888865 579999999999999999999999999999999999984 57998 889998753
Q ss_pred -c----ccccceeeccChHHHH-------HHHHHHhccc-ceeeehhhhhcccccccchhh--HHHHHHHHHHHhhhcch
Q 027590 144 -G----LNRDLSFKAEDRVENI-------RRIEKIEMPA-VQCCQKEISLRCSWMCHFKCV--RQGTQRAFTSLHEKGRS 208 (221)
Q Consensus 144 -~----~~~~ig~v~q~~~~~~-------~~v~~~~~~g-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 208 (221)
. .++.|+|++|++...+ ..+.+..... ........+....+....... ....++...++|+|++|
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 1 2347999999973211 1222222110 000000000011111111111 22345567789999999
Q ss_pred hHHHhhhhhccC
Q 027590 209 RVLLGLMIHMNH 220 (221)
Q Consensus 209 ~~~~~~~~~~~~ 220 (221)
|+.++++...+.
T Consensus 161 Rv~iArAL~~~P 172 (326)
T PRK11022 161 RVMIAMAIACRP 172 (326)
T ss_pred HHHHHHHHHhCC
Confidence 999999877653
No 115
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.78 E-value=2.4e-19 Score=150.20 Aligned_cols=144 Identities=15% Similarity=0.094 Sum_probs=96.0
Q ss_pred ccceeeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc----
Q 027590 74 STVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG---- 144 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~---- 144 (221)
.+++++.|+++.|+. ..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++...
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i--~~~g~~~~~~~~~~ 81 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV--SLVGQPLHQMDEEA 81 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeE--EECCEEcccCCHHH
Confidence 346788899998864 35999999999999999999999999999999999998 688999 8899877531
Q ss_pred ----ccccceeeccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 145 ----LNRDLSFKAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 145 ----~~~~ig~v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
..+.++|++|++..... ++.+....+. ..-.........+...... .+..++....+|.|++||+.++++
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGL-GKRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-HhHhhCChhhCCHHHHHHHHHHHH
Confidence 12579999998632111 2333222110 0000000000111111111 123445577899999999999998
Q ss_pred hhccC
Q 027590 216 IHMNH 220 (221)
Q Consensus 216 ~~~~~ 220 (221)
...+.
T Consensus 161 l~~~p 165 (228)
T PRK10584 161 FNGRP 165 (228)
T ss_pred HhcCC
Confidence 76543
No 116
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.1e-19 Score=150.11 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=98.2
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~i 149 (221)
++++.++++.|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI--IIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCCCCHHHHHHhCe
Confidence 467888999998888999999999999999999999999999999999998 588999 889988753 134679
Q ss_pred eeeccChHHHHH-HHHHHhcccceee---e--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 150 SFKAEDRVENIR-RIEKIEMPAVQCC---Q--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 150 g~v~q~~~~~~~-~v~~~~~~g~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|++|++..... ++.+......... . ........+..... .....++....+|.|++||+.++++...+.
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFH-IEHLRDSMGQSLSGGERRRVEIARALAANP 156 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcC-CHHHhhcchhhCCHHHHHHHHHHHHHhcCC
Confidence 999998642221 3333332211000 0 00000111111111 123345667889999999999999876543
No 117
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=4.9e-20 Score=146.80 Aligned_cols=132 Identities=19% Similarity=0.205 Sum_probs=95.1
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccceee
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLSFK 152 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig~v 152 (221)
++.++.+.-++.++|+++||++++||+++|+||||||||||+|+++-++ |++|.+ +|.|+++.. .++.+|+|+
T Consensus 5 e~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l--~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL--LFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred HHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceE--EEcCccccccChHHHHHHHHHH
Confidence 3444444446788999999999999999999999999999999999999 689999 999999975 577888999
Q ss_pred ccChHHHHHHHHHHhcc------cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 153 AEDRVENIRRIEKIEMP------AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 153 ~q~~~~~~~~v~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
.|.+...-.+|.+...+ .+.....+... ...++.......+.+.++++|++|+.++.+.
T Consensus 83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~l----lar~~l~~~~L~k~it~lSGGE~QriAliR~ 147 (223)
T COG4619 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDL----LARFALPDSILTKNITELSGGEKQRIALIRN 147 (223)
T ss_pred HcCccccccchhhccccchHHhccCCChHHHHHH----HHHcCCchhhhcchhhhccchHHHHHHHHHH
Confidence 88876544455554433 11111111111 1122333445566688999999999988663
No 118
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.7e-19 Score=154.64 Aligned_cols=142 Identities=14% Similarity=0.067 Sum_probs=95.7
Q ss_pred eeeeeeeEecCC-----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------
Q 027590 77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------- 143 (221)
Q Consensus 77 ~~~~~~~~~~~~-----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------- 143 (221)
+++.|+++.|+. .++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i--~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV--RVDDTLITSTSKNKDI 80 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEccccccccCH
Confidence 567888888864 46999999999999999999999999999999999998 688999 899987642
Q ss_pred -cccccceeeccChH-HHH-HHHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 144 -GLNRDLSFKAEDRV-ENI-RRIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 144 -~~~~~ig~v~q~~~-~~~-~~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
.+++.|+|++|++. ... .++.+...++... .. ........+...........++...++|.|++||+.++++.
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 23567999999863 111 2444443321100 00 00000001111111111223555678999999999999987
Q ss_pred hccC
Q 027590 217 HMNH 220 (221)
Q Consensus 217 ~~~~ 220 (221)
..++
T Consensus 161 ~~~p 164 (280)
T PRK13649 161 AMEP 164 (280)
T ss_pred HcCC
Confidence 6543
No 119
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.78 E-value=2e-19 Score=153.61 Aligned_cols=145 Identities=17% Similarity=0.115 Sum_probs=97.3
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---------
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------- 143 (221)
++.++++|+++.|++.++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI--VVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEEcccccccccccc
Confidence 35678999999998888999999999999999999999999999999999998 588999 899987641
Q ss_pred --------cccccceeeccChHHHH-HHHHHHhcccc-----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchh
Q 027590 144 --------GLNRDLSFKAEDRVENI-RRIEKIEMPAV-----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSR 209 (221)
Q Consensus 144 --------~~~~~ig~v~q~~~~~~-~~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (221)
.+++.++|++|++.... .++.+....+. ..-.........+............+....++.|++||
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 23567999999863221 12332221110 00000000001111111111111234567899999999
Q ss_pred HHHhhhhhccC
Q 027590 210 VLLGLMIHMNH 220 (221)
Q Consensus 210 ~~~~~~~~~~~ 220 (221)
+.++++...++
T Consensus 161 v~laral~~~p 171 (257)
T PRK10619 161 VSIARALAMEP 171 (257)
T ss_pred HHHHHHHhcCC
Confidence 99999876653
No 120
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.8e-19 Score=154.67 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=97.5
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDL 149 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~i 149 (221)
.++++.++++.|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. .+++.+
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI--LLDAQPLESWSSKAFARKV 87 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE--EECCEehhhCCHHHHhhhe
Confidence 3678889999998778999999999999999999999999999999999998 588999 889987743 345679
Q ss_pred eeeccChHHHHH-HHHHHhcccceeeeh--------hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 150 SFKAEDRVENIR-RIEKIEMPAVQCCQK--------EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 150 g~v~q~~~~~~~-~v~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+|++|++..... ++.+....+...... .......+..... ..+..++...++|.|+++|+.++++...+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVG-LKPLAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcC-CHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999998533221 344443332110000 0000001111111 11233445567899999999999887654
No 121
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.6e-19 Score=152.57 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=98.3
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~---- 143 (221)
..+++++|+++.|+...+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|.++..
T Consensus 11 ~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v--~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV--LFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE--EECCEEcccccCC
Confidence 346889999999988889999999999999999999999999999999999973 67999 889987641
Q ss_pred --cccccceeeccChHHHHHHHHHHhcccceee---ehhhhhcccccccch---hhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 144 --GLNRDLSFKAEDRVENIRRIEKIEMPAVQCC---QKEISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
..++.++|++|++.....++.+...++.... ............... ...+..++...+++.|++||+.++++
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lara 168 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIART 168 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHH
Confidence 3456799999987432235555444321100 000000000000000 00122344456789999999999998
Q ss_pred hhcc
Q 027590 216 IHMN 219 (221)
Q Consensus 216 ~~~~ 219 (221)
...+
T Consensus 169 l~~~ 172 (269)
T PRK14259 169 IAIE 172 (269)
T ss_pred HhcC
Confidence 7654
No 122
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.77 E-value=4.5e-19 Score=148.24 Aligned_cols=140 Identities=14% Similarity=0.046 Sum_probs=94.8
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccCh
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~ 156 (221)
++.++++.|+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++.....+.++|++|++
T Consensus 2 ~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI--IFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred EEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEeccccccccEEEEcCCC
Confidence 5678888888788999999999999999999999999999999999998 588999 8899876532235799999975
Q ss_pred HHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 157 VENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 157 ~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
..... ++.+..................+...... ....++....+|.|+++|+.++++...++
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL-TNTGKKKAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCC-cHHHhhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 32211 22222221100000000000111111111 23456667899999999999999876543
No 123
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=4.4e-19 Score=143.67 Aligned_cols=109 Identities=21% Similarity=0.222 Sum_probs=84.6
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc------cccccce
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------GLNRDLS 150 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------~~~~~ig 150 (221)
+++++++.|+..++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.++
T Consensus 2 ~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI--LIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred EEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEccccchhHHHHhhcEE
Confidence 4678888888778999999999999999999999999999999999998 578999 889987643 2356799
Q ss_pred eeccChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++|++..... ++.+.... .+|.|++||+.++++...+
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~-------------------------------~lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 80 MVFQDFALFPHLTVLENIAL-------------------------------GLSGGQQQRVALARALAMD 118 (178)
T ss_pred EEecCCccCCCCCHHHheee-------------------------------cCCHHHHHHHHHHHHHHCC
Confidence 99988642111 22221110 0889999999998876654
No 124
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=3.3e-19 Score=147.27 Aligned_cols=140 Identities=13% Similarity=0.080 Sum_probs=94.8
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccceee
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSFK 152 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~v 152 (221)
+++.++++.|+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++.. ...+.++|+
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v--~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEV--LWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEEcccchHHhhhheEEe
Confidence 56788888898888999999999999999999999999999999999998 588999 889988753 345678999
Q ss_pred ccChHHHH-HHHHHHhcccceeee-hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 153 AEDRVENI-RRIEKIEMPAVQCCQ-KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 153 ~q~~~~~~-~~v~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+|+..... .++.+.......... ........+...... ....++....+|.|+++|+.++++...+
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGL-AGFEDVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCC-HHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 98752211 123322222100000 000000111111111 1234556788999999999999887654
No 125
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.7e-19 Score=151.56 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=97.7
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~---- 143 (221)
++++++.++++.|+...+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|.++..
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~i~~~~~~ 82 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV--IYEGKNIYSNNFD 82 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEE--EECCEeccccccc
Confidence 346888999999988889999999999999999999999999999999999984 37999 889987642
Q ss_pred --cccccceeeccChHHHHHHHHHHhcccceee---e--hhhhhcccccccch---hhHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 --GLNRDLSFKAEDRVENIRRIEKIEMPAVQCC---Q--KEISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~---~--~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
..++.++|++|++.....++.+...++.... . .............. ......+.....+|.|++||+.++
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~la 162 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA 162 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHH
Confidence 2456799999986432224444433321100 0 00000000000000 001233445677999999999999
Q ss_pred hhhhcc
Q 027590 214 LMIHMN 219 (221)
Q Consensus 214 ~~~~~~ 219 (221)
++...+
T Consensus 163 ral~~~ 168 (254)
T PRK14273 163 RTLAIE 168 (254)
T ss_pred HHHHcC
Confidence 987654
No 126
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5.2e-19 Score=161.68 Aligned_cols=139 Identities=16% Similarity=0.120 Sum_probs=105.7
Q ss_pred cceeeeeeeEecCCcc-ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc----cccccc
Q 027590 75 TVAKSTNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDL 149 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~-~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~----~~~~~i 149 (221)
+.++.+|+++.|+..+ +|+++||+|++||-++|+|+|||||||++|+|.+++..+|+| ++||+++.. .+++-|
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I--~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSI--LIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcE--EECCeeHhhhChHHhhhhe
Confidence 3588899999998776 999999999999999999999999999999999999999999 999999975 688899
Q ss_pred eeeccChHHHHHHHHHHhcccceeeehhhhhcccc---------cccchhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 150 SFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSW---------MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 150 g~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
||||||.-..-.++-+....|+.... ..+..+.+ ....+.=...+.+.-..+++|++||+.++++.
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~sas-~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPSAS-DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF 502 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCCcC-HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence 99999964444455555555443221 11111111 11112223456677788999999999999864
No 127
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.1e-19 Score=152.53 Aligned_cols=145 Identities=16% Similarity=0.113 Sum_probs=98.0
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~---- 143 (221)
..+++++|+++.|+...+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|+++..
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i--~~~g~~~~~~~~~ 87 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM--NYNGSNILKGKVD 87 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE--EECCEEccccccC
Confidence 346889999999988889999999999999999999999999999999999984 37999 889988742
Q ss_pred --cccccceeeccChHHHHHHHHHHhcccceee-----ehhhhhcccccccchh---hHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 --GLNRDLSFKAEDRVENIRRIEKIEMPAVQCC-----QKEISLRCSWMCHFKC---VRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
..++.++|++|++.....++.+...++.... .........+...... ..+........++.|++||+.++
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la 167 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA 167 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 3456799999986432224444333211000 0000000000000000 01223445667899999999999
Q ss_pred hhhhccC
Q 027590 214 LMIHMNH 220 (221)
Q Consensus 214 ~~~~~~~ 220 (221)
++...++
T Consensus 168 ral~~~p 174 (259)
T PRK14274 168 RALATNP 174 (259)
T ss_pred HHHhcCC
Confidence 9876553
No 128
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.77 E-value=3.2e-19 Score=151.77 Aligned_cols=139 Identities=14% Similarity=0.092 Sum_probs=95.3
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------------
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------------- 143 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------------- 143 (221)
+++|+++.|+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 2 RFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI--QVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred EEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEccccccccccccccch
Confidence 5678888898788999999999999999999999999999999999998 688999 889987742
Q ss_pred ----cccccceeeccChHHHH-HHHHHHhcccc-----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 ----GLNRDLSFKAEDRVENI-RRIEKIEMPAV-----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 ----~~~~~ig~v~q~~~~~~-~~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
.+++.++|++|++.... .++.+...++. ..-.........+...... ....++....++.|++||+.++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LS~G~~qrv~la 158 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGL-ADKADHMPAQLSGGQQQRVAIA 158 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-hhHhhcChhhcCHHHHHHHHHH
Confidence 23567999999864322 13333332210 0000000000111111111 2234556678999999999999
Q ss_pred hhhhcc
Q 027590 214 LMIHMN 219 (221)
Q Consensus 214 ~~~~~~ 219 (221)
++...+
T Consensus 159 ral~~~ 164 (252)
T TIGR03005 159 RALAMR 164 (252)
T ss_pred HHHHcC
Confidence 987654
No 129
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.3e-19 Score=152.38 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=97.0
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc----cc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH----GL 145 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~----~~ 145 (221)
.+++.++++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ ++|+| .++|.++.. .+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i--~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV--YLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE--EECCEECCcCCHHHH
Confidence 4778899999988889999999999999999999999999999999999984 48999 899988753 34
Q ss_pred cccceeeccChHHHH-HHHHHHhccccee-----e-ehhhhhcccccccchh---hHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 146 NRDLSFKAEDRVENI-RRIEKIEMPAVQC-----C-QKEISLRCSWMCHFKC---VRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~-~~v~~~~~~g~~~-----~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
++.++|++|++.... .++.+....+... . .........+...... .....++...++|.|++||+.++++
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 568999999864222 1444443322100 0 0000000001001110 0122345567899999999999998
Q ss_pred hhcc
Q 027590 216 IHMN 219 (221)
Q Consensus 216 ~~~~ 219 (221)
...+
T Consensus 161 l~~~ 164 (250)
T PRK14247 161 LAFQ 164 (250)
T ss_pred HhcC
Confidence 7654
No 130
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4.3e-19 Score=153.17 Aligned_cols=140 Identities=20% Similarity=0.215 Sum_probs=97.4
Q ss_pred eeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccccc
Q 027590 77 AKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDL 149 (221)
Q Consensus 77 ~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~i 149 (221)
++++|+++.|+ ...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ +++|.++.. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV--LVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEECCccccHHHHHhhe
Confidence 56788999994 567999999999999999999999999999999999998 588999 899988743 345679
Q ss_pred eeeccChHHHH--HHHHHHhcccceee--e--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 150 SFKAEDRVENI--RRIEKIEMPAVQCC--Q--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 150 g~v~q~~~~~~--~~v~~~~~~g~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+|++|++...+ .++.+...++.... . .............. .....++....+|.|++||+.++++...+
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIG-LEKYRHRSPKTLSGGQGQCVALAGILTME 154 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC-CHHHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 99999975322 25555443321100 0 00000001111111 12334556678899999999999987654
No 131
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.77 E-value=3.2e-19 Score=166.19 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=100.2
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc-----ccc
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG-----LNR 147 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~-----~~~ 147 (221)
.+++++.|+++.|++..+++++||++++|++++|+||||||||||+++|+|++ |++|+| .++|.++... .+.
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL--EIGGNPCARLTPAKAHQL 86 (510)
T ss_pred CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECCCCCHHHHHhC
Confidence 34688999999998888999999999999999999999999999999999998 688999 8899887531 234
Q ss_pred cceeeccChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 148 DLSFKAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 148 ~ig~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
.+||++|++..... ++.+...++.............+....... ...++.+..+|.|++||+.++++...+.
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 69999998642221 455544432110000000000111111111 2234567889999999999999876543
No 132
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=8.3e-19 Score=141.44 Aligned_cols=77 Identities=26% Similarity=0.325 Sum_probs=66.4
Q ss_pred eeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccce
Q 027590 78 KSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 78 ~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
++.|++++|+. ..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. .+++.++
T Consensus 2 ~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV--RLDGADISQWDPNELGDHVG 79 (173)
T ss_pred EEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE--EECCEEcccCCHHHHHhheE
Confidence 46788888864 56999999999999999999999999999999999998 588999 889987753 3456789
Q ss_pred eeccCh
Q 027590 151 FKAEDR 156 (221)
Q Consensus 151 ~v~q~~ 156 (221)
|++|++
T Consensus 80 ~~~q~~ 85 (173)
T cd03246 80 YLPQDD 85 (173)
T ss_pred EECCCC
Confidence 999886
No 133
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.77 E-value=4.2e-19 Score=146.45 Aligned_cols=138 Identities=14% Similarity=0.114 Sum_probs=95.0
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccceeec
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSFKA 153 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~v~ 153 (221)
+++|+++.|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. .+++.++|++
T Consensus 2 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV--LLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred EEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEecccccHHhhhheEEec
Confidence 5678888898888999999999999999999999999999999999998 588999 889987643 3556899999
Q ss_pred cChHHHH-HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENI-RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++.... .++.+...+...... ......+...... ....++....++.|++||+.++++...++
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHS--DEQVEEALARVGL-NGFEDRPVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred cccccCCCcCHHHHHHhhccccc--HHHHHHHHHHcCC-hhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 8753221 133333222110000 0000111111111 12234557789999999999999876543
No 134
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.4e-19 Score=154.10 Aligned_cols=144 Identities=15% Similarity=0.079 Sum_probs=97.3
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~---- 143 (221)
++.+++.|+++.|+...+++++||++++|++++|+|+||||||||+++|+|+++ ++|+| +++|.++..
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I--~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI--TLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE--EECCEECcccccc
Confidence 447889999999988889999999999999999999999999999999999983 57999 899988742
Q ss_pred --cccccceeeccChHHHHHHHHHHhcccce------eeehhhhhcccccccchhh---HHHHHHHHHHHhhhcchhHHH
Q 027590 144 --GLNRDLSFKAEDRVENIRRIEKIEMPAVQ------CCQKEISLRCSWMCHFKCV---RQGTQRAFTSLHEKGRSRVLL 212 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~~v~~~~~~g~~------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 212 (221)
.+++.++|++|++.....++.+...++.. ................... .....+....+|.|++||+.+
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 174 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 24567999999864221234433332110 0000000000000000110 112334567789999999999
Q ss_pred hhhhhcc
Q 027590 213 GLMIHMN 219 (221)
Q Consensus 213 ~~~~~~~ 219 (221)
+++...+
T Consensus 175 aral~~~ 181 (267)
T PRK14235 175 ARAIAVS 181 (267)
T ss_pred HHHHHcC
Confidence 9987654
No 135
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=3.1e-19 Score=150.90 Aligned_cols=140 Identities=15% Similarity=0.135 Sum_probs=96.5
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccc----------ccc
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR----------HGL 145 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~----------~~~ 145 (221)
+++.|+++.|+...+++++||++++||+++|+||||||||||+++|+|++ |++|++ .++|.++. ...
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL--NIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEecccccccchhhHHHH
Confidence 56788999998888999999999999999999999999999999999998 588999 89998762 123
Q ss_pred cccceeeccChHHHHH-HHHHHhcc------cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 146 NRDLSFKAEDRVENIR-RIEKIEMP------AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~~-~v~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
++.++|++|++..... ++.+.... +... .........+...... ....++....++.|++||+.++++...
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~-~~~~~~~~~~l~~~gl-~~~~~~~~~~LS~G~~qrv~laral~~ 158 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSK-DQALARAEKLLERLRL-KPYADRFPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCC-hhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 4679999998643221 33332221 1000 0000001111111111 233455678899999999999998765
Q ss_pred cC
Q 027590 219 NH 220 (221)
Q Consensus 219 ~~ 220 (221)
++
T Consensus 159 ~p 160 (242)
T PRK11124 159 EP 160 (242)
T ss_pred CC
Confidence 43
No 136
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.77 E-value=9.4e-19 Score=148.91 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=95.7
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcc-----ccc------
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN-----CRH------ 143 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~-----~~~------ 143 (221)
++++.|+++.|+...+++++||++++|++++|+|+||||||||+++|+|++ |.+|++ .++|.+ +..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA--TYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EEecccccccccccCCHHHH
Confidence 578889999998778999999999999999999999999999999999998 588999 788876 432
Q ss_pred --cccccceeeccChHHHH-------HHHHHHh-cccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 --GLNRDLSFKAEDRVENI-------RRIEKIE-MPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~-------~~v~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
..++.++|++|++.... ..+.+.. ................+...........++....+|.|++||+.++
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 12356999999863211 1121111 0110000000111111221222212344566788999999999999
Q ss_pred hhhhcc
Q 027590 214 LMIHMN 219 (221)
Q Consensus 214 ~~~~~~ 219 (221)
++...+
T Consensus 161 ral~~~ 166 (253)
T TIGR02323 161 RNLVTR 166 (253)
T ss_pred HHHhcC
Confidence 987654
No 137
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=6.4e-19 Score=153.08 Aligned_cols=144 Identities=17% Similarity=0.088 Sum_probs=97.4
Q ss_pred cceeeeeeeEecCCc-----cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----
Q 027590 75 TVAKSTNILWHKNSV-----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~-----~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----- 143 (221)
+.+++.|+++.|+.. .+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~~~~~ 82 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT--IVGDYAIPANLKKI 82 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEEcccccccc
Confidence 346788999989653 4999999999999999999999999999999999999 588999 889987631
Q ss_pred ----cccccceeeccChHH-HH-HHHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 ----GLNRDLSFKAEDRVE-NI-RRIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 ----~~~~~ig~v~q~~~~-~~-~~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
.+++.++|++|++.. .. .++.+...++... .. .....................+....+|.|++||+.++
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~la 162 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALA 162 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 235679999998632 11 2454443332110 00 00000001111111112234456788999999999999
Q ss_pred hhhhccC
Q 027590 214 LMIHMNH 220 (221)
Q Consensus 214 ~~~~~~~ 220 (221)
++...+.
T Consensus 163 ral~~~p 169 (289)
T PRK13645 163 GIIAMDG 169 (289)
T ss_pred HHHHhCC
Confidence 9876543
No 138
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=2.1e-19 Score=146.66 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=98.4
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~i 149 (221)
.+.+.|+.++|+..+++++|||++++||+++++|||||||||.+.++.|+. |++|+| .+|+.|+++ ..+..|
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i--~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI--LLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceE--EECCcccccCChHHHhhcCc
Confidence 567888999999999999999999999999999999999999999999999 689999 999999986 234569
Q ss_pred eeeccChHHHHH-HHHHHhcc----cceeee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 150 SFKAEDRVENIR-RIEKIEMP----AVQCCQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 150 g~v~q~~~~~~~-~v~~~~~~----g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
||.||++.-... +|.+.... ...... .........+..+. -....++....+|+|+|+|+.++++.+.++
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~-i~hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH-ITHLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhc-hHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence 999999754433 33333222 000000 00000000000110 011223344567789999999999988765
No 139
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.6e-19 Score=151.50 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=96.4
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~---- 143 (221)
.+.+++.|++++|+...+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|.++..
T Consensus 2 ~~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v--~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI--LLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEE--EECCEEcccccCC
Confidence 356889999999988889999999999999999999999999999999999973 37998 899988742
Q ss_pred --cccccceeeccChHHHHH-HHHHHhccccee-----eehhhhhcccccccchh---hHHHHHHHHHHHhhhcchhHHH
Q 027590 144 --GLNRDLSFKAEDRVENIR-RIEKIEMPAVQC-----CQKEISLRCSWMCHFKC---VRQGTQRAFTSLHEKGRSRVLL 212 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~-~v~~~~~~g~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 212 (221)
.+++.++|++|++..... ++.+...++... ................. ..+........+|.|++||+.+
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 346679999998642221 333333221100 00000000000000000 0112234456789999999999
Q ss_pred hhhhhcc
Q 027590 213 GLMIHMN 219 (221)
Q Consensus 213 ~~~~~~~ 219 (221)
+++...+
T Consensus 160 aral~~~ 166 (252)
T PRK14256 160 ARTIAVK 166 (252)
T ss_pred HHHHhcC
Confidence 9877654
No 140
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=3.5e-19 Score=153.90 Aligned_cols=142 Identities=14% Similarity=0.169 Sum_probs=97.7
Q ss_pred ceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccc
Q 027590 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~i 149 (221)
++++.|+++.|+ ...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++.. .+.+.+
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV--LIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEECCcCCHHHHHhhe
Confidence 577889999995 556999999999999999999999999999999999998 688999 899988753 345679
Q ss_pred eeeccChHH-HH-HHHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 150 SFKAEDRVE-NI-RRIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 150 g~v~q~~~~-~~-~~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|++|++.. .. .++.+....+... .. ........+..... ..+..++....+|.|+++|+.++++...++
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~Gq~qrl~laraL~~~p 156 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLG-LEELRDRVPHHLSGGEKKRVAIAGVIAMEP 156 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCC-ChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998632 11 2444443321110 00 00000011111111 123345556788999999999999876543
No 141
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.77 E-value=2.9e-19 Score=152.88 Aligned_cols=139 Identities=21% Similarity=0.225 Sum_probs=96.0
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccce
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
++++.|+++.|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. .+.+.++
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i--~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV--RLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE--EECCEEcccCCHHHhhhheE
Confidence 367888999998888999999999999999999999999999999999998 688999 889987643 2346799
Q ss_pred eeccChHHHHH-HHHHHhcccceeee----hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhh
Q 027590 151 FKAEDRVENIR-RIEKIEMPAVQCCQ----KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIH 217 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (221)
|++|++..... ++.+....+..... .............. .....++...++|.|++||+.++++..
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVD-LAHLAGRDYPQLSGGEQQRVQLARVLA 150 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcC-CHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99998643221 44444333211000 00000000111111 122344556788999999999999876
No 142
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.77 E-value=1.2e-18 Score=167.52 Aligned_cols=141 Identities=17% Similarity=0.066 Sum_probs=100.7
Q ss_pred cceeeeeeeEecC--CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~--~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
.-++.+|++++|+ +.++++++||++++||.++|+|+||||||||+|+|+|++ |++|+| ++||.++.+ .+++
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I--~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV--FYDGQDLAGLDVQAVRR 527 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE--EECCEEcCcCCHHHHHh
Confidence 3578899999994 457999999999999999999999999999999999999 688999 999999875 5788
Q ss_pred cceeeccChHHHHHHHHHHhcccceeeehhhhhccccc---------ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 148 DLSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWM---------CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
.||||+|++.-.-.++.+...++.- . ...+...... ...........+.-..+|+|+|||..++++.-.
T Consensus 528 ~i~~v~Q~~~lf~gTI~eNi~~~~~-~-~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~ 605 (686)
T TIGR03797 528 QLGVVLQNGRLMSGSIFENIAGGAP-L-TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR 605 (686)
T ss_pred ccEEEccCCccCcccHHHHHhcCCC-C-CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999986544566666655432 1 0000000000 000000111111224589999999999998765
Q ss_pred c
Q 027590 219 N 219 (221)
Q Consensus 219 ~ 219 (221)
+
T Consensus 606 ~ 606 (686)
T TIGR03797 606 K 606 (686)
T ss_pred C
Confidence 4
No 143
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.3e-19 Score=150.62 Aligned_cols=141 Identities=14% Similarity=0.173 Sum_probs=95.3
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc----ccCceEEEEECCccccc----ccccc
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL----HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l----~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
+++.|+++.|+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++.. ..++.
T Consensus 3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i--~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLV--EIEGKDVKNQDVVALRKN 80 (246)
T ss_pred eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEE--EECCEecccCCHHHHhhh
Confidence 56788999998888999999999999999999999999999999999997 368999 899998753 34567
Q ss_pred ceeeccChHHHHHHHHHHhcccceee------ehhhhhcccccccchhh---HHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAVQCC------QKEISLRCSWMCHFKCV---RQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++|++.....++.+...++.... ................. .+...+....++.|++||+.++++...+
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999996432234444333221000 00000000000000110 1123344567899999999999987654
No 144
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.1e-19 Score=151.97 Aligned_cols=145 Identities=17% Similarity=0.098 Sum_probs=98.3
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~---- 143 (221)
...+++.|+++.|++.++++++||++++|++++|+|+||||||||+++|+|+++ ++|++ .++|.++..
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i--~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI--LLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE--EECCEEccccccc
Confidence 346788999999988789999999999999999999999999999999999973 57999 899988742
Q ss_pred --cccccceeeccChHHHHHHHHHHhccccee---ee--hhhhhcccccccchh---hHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 --GLNRDLSFKAEDRVENIRRIEKIEMPAVQC---CQ--KEISLRCSWMCHFKC---VRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~---~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
.+++.++|++|++.....++.+...++... .. ........+...... ......+....+|.|++||+.++
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 168 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIA 168 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 345679999998642212444443322100 00 000000001101110 01233455667899999999999
Q ss_pred hhhhccC
Q 027590 214 LMIHMNH 220 (221)
Q Consensus 214 ~~~~~~~ 220 (221)
++...+.
T Consensus 169 ral~~~p 175 (260)
T PRK10744 169 RGIAIRP 175 (260)
T ss_pred HHHHCCC
Confidence 9876553
No 145
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=3.7e-19 Score=147.43 Aligned_cols=142 Identities=15% Similarity=0.100 Sum_probs=93.7
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-cccccceeec
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-GLNRDLSFKA 153 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-~~~~~ig~v~ 153 (221)
+++++|+++.|+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.++|++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI--KLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEeCcchhhHhhcEEec
Confidence 467889999998888999999999999999999999999999999999998 688999 889987542 2456789998
Q ss_pred cChHHHH-HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENI-RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|+..... .++.+..................+...... ....+....++|.|+++|+.++++...++
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGL-APLAHLPFGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCC-HHHHcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 7532110 122222111000000000000111111111 12234556789999999999999876653
No 146
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.77 E-value=1.3e-18 Score=139.17 Aligned_cols=85 Identities=24% Similarity=0.253 Sum_probs=70.2
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----ccccccee
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDLSF 151 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~ig~ 151 (221)
++.|+++.|+..++++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.++|
T Consensus 2 ~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v--~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 2 ELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI--LVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred EEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEECCcCCHHHHHhcCeEE
Confidence 5678888898788999999999999999999999999999999999998 578999 889988753 23567999
Q ss_pred eccChHHHHHHHH
Q 027590 152 KAEDRVENIRRIE 164 (221)
Q Consensus 152 v~q~~~~~~~~v~ 164 (221)
++|-..-+.+++.
T Consensus 80 ~~qLS~G~~qrl~ 92 (163)
T cd03216 80 VYQLSVGERQMVE 92 (163)
T ss_pred EEecCHHHHHHHH
Confidence 9984433334333
No 147
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.77 E-value=5.8e-19 Score=147.35 Aligned_cols=141 Identities=16% Similarity=0.063 Sum_probs=97.1
Q ss_pred eeeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------c
Q 027590 77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------G 144 (221)
Q Consensus 77 ~~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~ 144 (221)
+++.|+++.|+. ..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ +++|.++.. .
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL--KVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEEhHhcCHhHHHH
Confidence 567788888864 67999999999999999999999999999999999999 588999 899998753 2
Q ss_pred ccccceeeccChHHHHH-HHHHHhcccc-----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 145 LNRDLSFKAEDRVENIR-RIEKIEMPAV-----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~~-~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
.++.++|++|++..... ++.+...+.. ............+..... ..+..++....++.|++||+.++++...
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~lS~G~~qrv~laral~~ 158 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVG-LGDHLDYYPHNLSGGQKQRVAIARALVH 158 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC-ChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 35679999999754331 3333322211 000000000111111111 1234456678899999999999998776
Q ss_pred cC
Q 027590 219 NH 220 (221)
Q Consensus 219 ~~ 220 (221)
++
T Consensus 159 ~p 160 (220)
T TIGR02982 159 RP 160 (220)
T ss_pred CC
Confidence 54
No 148
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.77 E-value=6.9e-19 Score=151.03 Aligned_cols=142 Identities=14% Similarity=0.133 Sum_probs=94.7
Q ss_pred ceeeeeeeEecC---------CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--
Q 027590 76 VAKSTNILWHKN---------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-- 143 (221)
Q Consensus 76 ~~~~~~~~~~~~---------~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-- 143 (221)
+++++|+++.|+ ...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV--SFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEEccccC
Confidence 366788888885 357999999999999999999999999999999999998 688999 899988753
Q ss_pred -----cccccceeeccChHHHH---HHHHHHhccc-----ceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhH
Q 027590 144 -----GLNRDLSFKAEDRVENI---RRIEKIEMPA-----VQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRV 210 (221)
Q Consensus 144 -----~~~~~ig~v~q~~~~~~---~~v~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (221)
..++.++|++|++...+ .++.+..... ...-.........+...........++....++.|++||+
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv 159 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI 159 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH
Confidence 13467999999863211 1333322110 0000000000011111111111234556778999999999
Q ss_pred HHhhhhhcc
Q 027590 211 LLGLMIHMN 219 (221)
Q Consensus 211 ~~~~~~~~~ 219 (221)
.++++...+
T Consensus 160 ~laral~~~ 168 (265)
T TIGR02769 160 NIARALAVK 168 (265)
T ss_pred HHHHHHhcC
Confidence 999987654
No 149
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.77 E-value=6.9e-19 Score=142.42 Aligned_cols=110 Identities=22% Similarity=0.195 Sum_probs=85.1
Q ss_pred eeeeeeEecCCc--cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---ccccccee
Q 027590 78 KSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSF 151 (221)
Q Consensus 78 ~~~~~~~~~~~~--~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~ 151 (221)
+++++++.|+.. ++++++||++++||+++|+|+||||||||+++|+|++ |.+|++ .++|.++.. .+++.++|
T Consensus 2 ~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 2 SINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI--TLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred EEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE--EECCEEHHHHHHHHHhhEEE
Confidence 467788888654 7999999999999999999999999999999999998 578999 899987643 34567899
Q ss_pred eccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++...-.++.+.. ...++.|++||+.++++...++
T Consensus 80 ~~q~~~~~~~tv~~~i-------------------------------~~~LS~G~~qrv~laral~~~p 117 (178)
T cd03247 80 LNQRPYLFDTTLRNNL-------------------------------GRRFSGGERQRLALARILLQDA 117 (178)
T ss_pred EccCCeeecccHHHhh-------------------------------cccCCHHHHHHHHHHHHHhcCC
Confidence 9987631101111110 5678889999999988776543
No 150
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.4e-19 Score=151.61 Aligned_cols=143 Identities=14% Similarity=0.090 Sum_probs=96.3
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc-----
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH----- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~----- 143 (221)
+++++.|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ ++|+| .++|.++..
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i--~~~g~~i~~~~~~~ 88 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV--SIEGEDIYEPDVDV 88 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE--EECCEEcccccchH
Confidence 36788999999988889999999999999999999999999999999999984 58999 889988742
Q ss_pred -cccccceeeccChHHHHHHHHHHhcccc----eeeehhhhhcccccccchh---hHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 144 -GLNRDLSFKAEDRVENIRRIEKIEMPAV----QCCQKEISLRCSWMCHFKC---VRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~~~~~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
.+++.++|++|++.....++.+...++. ............+...... .....++....+|.|++||+.++++
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 168 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIART 168 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHH
Confidence 2456799999986422123333322210 0000000000001100000 0122345567899999999999998
Q ss_pred hhcc
Q 027590 216 IHMN 219 (221)
Q Consensus 216 ~~~~ 219 (221)
...+
T Consensus 169 l~~~ 172 (258)
T PRK14268 169 LAVK 172 (258)
T ss_pred HHcC
Confidence 7654
No 151
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.8e-19 Score=151.25 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=97.5
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc------ccCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL------HWRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l------~~~G~i~~~l~g~~~~~---- 143 (221)
.+++++.|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++..
T Consensus 19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~i~~~~~~ 96 (268)
T PRK14248 19 EHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI--LYEGLNILDSNIN 96 (268)
T ss_pred CceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE--EECCEEccccccc
Confidence 34688899999998888999999999999999999999999999999999985 367999 899988742
Q ss_pred --cccccceeeccChHHHHHHHHHHhcccce--e--eeh-hhhhcccccccc---hhhHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 --GLNRDLSFKAEDRVENIRRIEKIEMPAVQ--C--CQK-EISLRCSWMCHF---KCVRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~~v~~~~~~g~~--~--~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
..++.++|++|++.....++.+...++.. . ... ............ ........+....+|.|++||+.++
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~la 176 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA 176 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHH
Confidence 24567999999864221233333222110 0 000 000000000000 0001234456678999999999999
Q ss_pred hhhhccC
Q 027590 214 LMIHMNH 220 (221)
Q Consensus 214 ~~~~~~~ 220 (221)
++...+.
T Consensus 177 ral~~~p 183 (268)
T PRK14248 177 RTLAMKP 183 (268)
T ss_pred HHHhCCC
Confidence 9876553
No 152
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=5.4e-19 Score=150.34 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=97.1
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~---- 143 (221)
++++++.|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i--~~~g~~i~~~~~~ 79 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV--LLDGKNIYDKDVD 79 (251)
T ss_pred ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEE--EECCEeccccccc
Confidence 456788999999988889999999999999999999999999999999999973 57999 899988742
Q ss_pred --cccccceeeccChHHHHHHHHHHhccccee--e--e-hhhhhcccccccch---hhHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 --GLNRDLSFKAEDRVENIRRIEKIEMPAVQC--C--Q-KEISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~--~--~-~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
..++.++|++|++.....++.+...++... . . ........+..... .......+....+|.|++||+.++
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 159 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIA 159 (251)
T ss_pred HHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 235679999998642212333332221100 0 0 00000000000000 001234455678899999999999
Q ss_pred hhhhcc
Q 027590 214 LMIHMN 219 (221)
Q Consensus 214 ~~~~~~ 219 (221)
++...+
T Consensus 160 ral~~~ 165 (251)
T PRK14270 160 RTIAVK 165 (251)
T ss_pred HHHhcC
Confidence 987654
No 153
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.76 E-value=2.7e-19 Score=156.50 Aligned_cols=132 Identities=13% Similarity=0.081 Sum_probs=89.8
Q ss_pred ecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccceeeccChHHHH
Q 027590 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSFKAEDRVENI 160 (221)
Q Consensus 85 ~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~v~q~~~~~~ 160 (221)
.|+..++++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.+||++|++....
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA--RVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 466778999999999999999999999999999999999998 688999 899988753 34567999999853221
Q ss_pred H-HHHHHhcc-----cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 161 R-RIEKIEMP-----AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 161 ~-~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
. ++.+...+ +. ...........+...... ....++....+|.|++||+.++++...++
T Consensus 80 ~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~~qrv~la~al~~~p 143 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGL-PKDEAEERAEELLELFEL-GEAADRPVGTYSGGMRRRLDIAASLIHQP 143 (302)
T ss_pred CCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCC-hhHhCCchhhCCHHHHHHHHHHHHHhcCC
Confidence 1 33332222 10 000000001111111111 23345667899999999999999876543
No 154
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.76 E-value=5.6e-19 Score=149.26 Aligned_cols=141 Identities=11% Similarity=0.074 Sum_probs=95.5
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~i 149 (221)
++++.|+++.|+..++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..+..+
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV--LFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeE--EECCeecCCCCHHHHHhcCe
Confidence 467889999998778999999999999999999999999999999999998 688999 889987743 123469
Q ss_pred eeeccChHHHHH-HHHHHhcccceeee------------hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 150 SFKAEDRVENIR-RIEKIEMPAVQCCQ------------KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 150 g~v~q~~~~~~~-~v~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
+|++|++..... ++.+...++..... ........+...... ....++....+|.|++||+.++++.
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-ADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-chhhcCChhhCCHHHHHHHHHHHHH
Confidence 999998632221 33333322110000 000000111111111 1233455677899999999999987
Q ss_pred hcc
Q 027590 217 HMN 219 (221)
Q Consensus 217 ~~~ 219 (221)
..+
T Consensus 159 ~~~ 161 (242)
T TIGR03411 159 MQD 161 (242)
T ss_pred hcC
Confidence 654
No 155
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.76 E-value=1.1e-18 Score=154.52 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=95.4
Q ss_pred ccceeeeeeeEecC----CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-c---CceEEEEECCccccc--
Q 027590 74 STVAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-W---RGKLTYILDGDNCRH-- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~----~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~---~G~i~~~l~g~~~~~-- 143 (221)
.++++++|+++.|. ...+++++||++++||+++|+|+||||||||+++|+|+++ + +|+| +++|+++..
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I--~~~G~~i~~~~ 87 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSA--TFNGREILNLP 87 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEE--EECCEECCcCC
Confidence 34678888888883 3579999999999999999999999999999999999994 4 8999 899998753
Q ss_pred --c----ccccceeeccChHHHH-------HHHHHHhcc-cceeeehhhhhcccccccch--hhHHHHHHHHHHHhhhcc
Q 027590 144 --G----LNRDLSFKAEDRVENI-------RRIEKIEMP-AVQCCQKEISLRCSWMCHFK--CVRQGTQRAFTSLHEKGR 207 (221)
Q Consensus 144 --~----~~~~ig~v~q~~~~~~-------~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 207 (221)
. ..+.|+|++|++...+ ..+.+.... +.............+..... ...+...+...++|+|++
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 1 1257999999973211 122222111 10000000000011110110 011223456678999999
Q ss_pred hhHHHhhhhhccC
Q 027590 208 SRVLLGLMIHMNH 220 (221)
Q Consensus 208 ~~~~~~~~~~~~~ 220 (221)
||+.++++...+.
T Consensus 168 QRv~IArAL~~~P 180 (330)
T PRK09473 168 QRVMIAMALLCRP 180 (330)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999876653
No 156
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.2e-19 Score=149.04 Aligned_cols=143 Identities=13% Similarity=0.094 Sum_probs=97.1
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc------
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH------ 143 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~------ 143 (221)
++++.|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|.++..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i--~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI--YFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE--EECCEEcccchhhHH
Confidence 5778899999987889999999999999999999999999999999999984 57999 889987742
Q ss_pred cccccceeeccChHHHHHHHHHHhcccceee----e-hhhhhccccccc---chhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 144 GLNRDLSFKAEDRVENIRRIEKIEMPAVQCC----Q-KEISLRCSWMCH---FKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 144 ~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~----~-~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
.+++.++|++|++.....++.+...++.... . ........+... ........++....+|.|+++|+.++++
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a 160 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA 160 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence 2456799999986422123333332211000 0 000000000000 0000123455678899999999999998
Q ss_pred hhccC
Q 027590 216 IHMNH 220 (221)
Q Consensus 216 ~~~~~ 220 (221)
...++
T Consensus 161 l~~~p 165 (250)
T PRK14262 161 LAVEP 165 (250)
T ss_pred HhCCC
Confidence 76653
No 157
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.76 E-value=2e-18 Score=166.52 Aligned_cols=143 Identities=17% Similarity=0.109 Sum_probs=101.9
Q ss_pred cceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
..++.+|++++|+. .++++++||++++||.++|+|+||||||||+++|+|++ |++|+| .+||.++.+ .+++
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I--~idg~~i~~~~~~~lr~ 553 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEI--LFDGIPREEIPREVLAN 553 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEeHHHCCHHHHHh
Confidence 35789999999963 57999999999999999999999999999999999999 688999 899999875 5788
Q ss_pred cceeeccChHHHHHHHHHHhcccceee--ehhhhhcc-----cc-cccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 148 DLSFKAEDRVENIRRIEKIEMPAVQCC--QKEISLRC-----SW-MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~g~~~~--~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.||||+|++.-.-.++.+...++.-.. ....+... .+ ............+.-..+|+|+|||+.++++...+
T Consensus 554 ~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~ 633 (710)
T TIGR03796 554 SVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633 (710)
T ss_pred heeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence 999999998655557777766542110 00000000 00 00000011111222345889999999999987654
No 158
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=6.3e-19 Score=150.59 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=96.4
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc------
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH------ 143 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~------ 143 (221)
.+++.|++++|+..++++++||++++||+++|+|+||||||||+++|+|+++ ++|+| .++|.++..
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I--~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEV--LLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEE--EECCEeccccccChH
Confidence 5778999999987889999999999999999999999999999999999983 48999 889987732
Q ss_pred cccccceeeccChHHHHH-HHHHHhcccc-----eeeehhhhhcccccccchh---hHHHHHHHHHHHhhhcchhHHHhh
Q 027590 144 GLNRDLSFKAEDRVENIR-RIEKIEMPAV-----QCCQKEISLRCSWMCHFKC---VRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 144 ~~~~~ig~v~q~~~~~~~-~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
..++.++|++|+...... ++.+....+. ............+...... ..+...+....+|.|++||+.+++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIAR 161 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 345679999998532221 3333322211 0000000000011100000 112344556789999999999999
Q ss_pred hhhccC
Q 027590 215 MIHMNH 220 (221)
Q Consensus 215 ~~~~~~ 220 (221)
+...++
T Consensus 162 al~~~p 167 (258)
T PRK14241 162 AIAVEP 167 (258)
T ss_pred HHhcCC
Confidence 876543
No 159
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.76 E-value=2.1e-18 Score=166.32 Aligned_cols=144 Identities=15% Similarity=0.106 Sum_probs=103.7
Q ss_pred cceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
.-++.+|++++|+ +.++++++||++++|+.++|+|+||||||||+++|+|++ |++|+| ++||.++.+ .+++.
T Consensus 472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I--~idg~~i~~~~~~~lr~~ 549 (708)
T TIGR01193 472 GDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI--LLNGFSLKDIDRHTLRQF 549 (708)
T ss_pred CcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE--EECCEEHHHcCHHHHHHh
Confidence 3578899999996 467999999999999999999999999999999999998 688999 899999865 57789
Q ss_pred ceeeccChHHHHHHHHHHhcccceeeehhhhhccccc---------ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWM---------CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
||||+|++.-.-.++.+...++..+.....+...... .........+.+.-..+|+|+|||+.++++...+
T Consensus 550 i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 550 INYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred eEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 9999999876666788877775211111000000000 0000001111222345888999999999987655
Q ss_pred C
Q 027590 220 H 220 (221)
Q Consensus 220 ~ 220 (221)
+
T Consensus 630 p 630 (708)
T TIGR01193 630 S 630 (708)
T ss_pred C
Confidence 3
No 160
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.1e-18 Score=150.90 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=97.7
Q ss_pred ceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 76 ~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
++++.|+++.|+. ..+++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|.++.. .+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV--KIDGELLTAENVWNLRR 81 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE--EECCEECCcCCHHHHhc
Confidence 5788999999963 35899999999999999999999999999999999999 588999 899988753 3456
Q ss_pred cceeeccChHHHH-H-HHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 148 DLSFKAEDRVENI-R-RIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 148 ~ig~v~q~~~~~~-~-~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
.+||++|++...+ . ++.+....+.. ................. ..+..++....+|.|++||+.++++...+.
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVN-MLDFKTREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC-CHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 7999999974222 2 45554433210 00000000000000001 112334455678999999999999877653
No 161
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=6.2e-19 Score=146.75 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=96.6
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-cccccceee
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-GLNRDLSFK 152 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-~~~~~ig~v 152 (221)
+++.+.|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.++|+
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~i~~~~~~~~i~~~ 87 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI--QIDGKTATRGDRSRFMAYL 87 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeE--EECCEEccchhhhhceEEe
Confidence 4678899999998888999999999999999999999999999999999998 588999 889988753 234569999
Q ss_pred ccChHHHHH-HHHHHhccccee-eehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENIR-RIEKIEMPAVQC-CQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~~-~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|++..... ++.+...+.... ..........+...... ....++....++.|+++|+.++++...++
T Consensus 88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 88 GHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGL-AGYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred ecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCC-hhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 987532111 222222111000 00000000001111111 12235556789999999999999876654
No 162
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.76 E-value=6.6e-19 Score=150.78 Aligned_cols=143 Identities=15% Similarity=0.093 Sum_probs=98.4
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-cc---CceEEEEECCccccc------
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW---RGKLTYILDGDNCRH------ 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~---~G~i~~~l~g~~~~~------ 143 (221)
.+++++.|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++ |+ +|++ .++|.++..
T Consensus 2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i--~~~g~~~~~~~~~~~ 79 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI--ELLGRTVQREGRLAR 79 (262)
T ss_pred CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEE--EECCEecccccccch
Confidence 34688999999998888999999999999999999999999999999999998 44 3998 899987742
Q ss_pred ---cccccceeeccChHHHHH-HHHHHhcccceeee------------hhhhhcccccccchhhHHHHHHHHHHHhhhcc
Q 027590 144 ---GLNRDLSFKAEDRVENIR-RIEKIEMPAVQCCQ------------KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGR 207 (221)
Q Consensus 144 ---~~~~~ig~v~q~~~~~~~-~v~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (221)
.+++.++|++|++..... ++.+....+..... ........+...... ....++....+|.|++
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGM-VHFAHQRVSTLSGGQQ 158 (262)
T ss_pred hHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCC-HHHHhCCccccCHHHH
Confidence 224569999998643221 44444333211000 000000111111111 1234556677899999
Q ss_pred hhHHHhhhhhcc
Q 027590 208 SRVLLGLMIHMN 219 (221)
Q Consensus 208 ~~~~~~~~~~~~ 219 (221)
||+.++++...+
T Consensus 159 qrv~laral~~~ 170 (262)
T PRK09984 159 QRVAIARALMQQ 170 (262)
T ss_pred HHHHHHHHHhcC
Confidence 999999987654
No 163
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=3e-18 Score=143.61 Aligned_cols=140 Identities=14% Similarity=0.064 Sum_probs=95.7
Q ss_pred eeeeeeeEecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccce
Q 027590 77 AKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 77 ~~~~~~~~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
+++.|+++.|+. ..+++++||++.+|++++|+||||||||||+++|+|++ |.+|++ .++|.++.. .+++.++
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI--LIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE--EECCEeHHHcCHHHHhhhEE
Confidence 567889988864 57999999999999999999999999999999999999 578999 899987753 3456799
Q ss_pred eeccChHHHHHHHHHHhcccceeeehhhhhcccccccch----------hhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 151 FKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFK----------CVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 151 ~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++|++...-.++.+.......... ......+..... ...........+++.|+++|+.++++...+.
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNAT--DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCC--HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999975433356555444211000 000000000000 0001112224678999999999999876653
No 164
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=8.9e-19 Score=149.12 Aligned_cols=143 Identities=10% Similarity=0.100 Sum_probs=97.9
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----ccccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~ 148 (221)
.++++.|+++.|+..++++++||++.+|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..+..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI--LLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE--EECCEECCCCCHHHHHhcC
Confidence 3678899999998888999999999999999999999999999999999998 588999 899988753 12345
Q ss_pred ceeeccChHHHHH-HHHHHhccccee------eehh-------------hhhcccccccchhhHHHHHHHHHHHhhhcch
Q 027590 149 LSFKAEDRVENIR-RIEKIEMPAVQC------CQKE-------------ISLRCSWMCHFKCVRQGTQRAFTSLHEKGRS 208 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~g~~~------~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (221)
++|++|++..... ++.+....+... .... ......+..... ..+..++...++|.|++|
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVG-LLEHANRQAGNLAYGQQR 160 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCC-hhhhhhCChhhCCHHHHH
Confidence 8899998643222 444433322100 0000 000000111111 123345566778999999
Q ss_pred hHHHhhhhhccC
Q 027590 209 RVLLGLMIHMNH 220 (221)
Q Consensus 209 ~~~~~~~~~~~~ 220 (221)
|+.++++...++
T Consensus 161 rv~la~al~~~p 172 (255)
T PRK11300 161 RLEIARCMVTQP 172 (255)
T ss_pred HHHHHHHHhcCC
Confidence 999999876543
No 165
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=8.6e-19 Score=143.66 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=89.4
Q ss_pred ceeeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCceEEEEECCcccccccccc
Q 027590 76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILDGDNCRHGLNRD 148 (221)
Q Consensus 76 ~~~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l---~~~G~i~~~l~g~~~~~~~~~~ 148 (221)
+++++++++.|+. .++++++||++++|++++|+|+||||||||+++|+|+. +++|++ .++|+++...+++.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i--~~~g~~~~~~~~~~ 80 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI--LINGRPLDKNFQRS 80 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE--EECCEehHHHhhhc
Confidence 4667888888864 67999999999999999999999999999999999975 478999 89998876555677
Q ss_pred ceeeccChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++|++..... ++.+....+. .+.+++.|+++|+.++++...+
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~--------------------------~~~~LSgGe~qrv~la~al~~~ 126 (192)
T cd03232 81 TGYVEQQDVHSPNLTVREALRFSA--------------------------LLRGLSVEQRKRLTIGVELAAK 126 (192)
T ss_pred eEEecccCccccCCcHHHHHHHHH--------------------------HHhcCCHHHhHHHHHHHHHhcC
Confidence 9999997643221 3333322110 0118999999999999877654
No 166
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=6.6e-19 Score=151.37 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=97.5
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~---- 143 (221)
..+++++|++++|+..++++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|.++..
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~~~~~~~~ 95 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI--LYRGIDINRKEIN 95 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE--EECCEEcccccCC
Confidence 346889999999988899999999999999999999999999999999999983 57999 899988742
Q ss_pred --cccccceeeccChHHHHHHHHHHhccccee--ee---hhhhhcccccccc---hhhHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 --GLNRDLSFKAEDRVENIRRIEKIEMPAVQC--CQ---KEISLRCSWMCHF---KCVRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~--~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
..++.++|++|++.....++.+....+... .. ............. ....+..++...++|.|++||+.++
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 235679999998643222444433332100 00 0000000000000 0001223445667899999999999
Q ss_pred hhhhcc
Q 027590 214 LMIHMN 219 (221)
Q Consensus 214 ~~~~~~ 219 (221)
++...+
T Consensus 176 ral~~~ 181 (267)
T PRK14237 176 RAIAVK 181 (267)
T ss_pred HHHhcC
Confidence 987654
No 167
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=9.8e-19 Score=148.64 Aligned_cols=144 Identities=10% Similarity=0.083 Sum_probs=97.0
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc-----
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH----- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~----- 143 (221)
+++++.|+++.|+..++++++||++++||+++|+|+||||||||+++|+|+++ .+|++ .++|+++..
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v--~i~g~~~~~~~~~~ 80 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI--KFEGQNIYGSKMDL 80 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE--EECCEEcccccchH
Confidence 46788999999988889999999999999999999999999999999999984 57999 889988742
Q ss_pred -cccccceeeccChHHHHHHHHHHhcccc-----eeeehhhhhcccccccchh---hHHHHHHHHHHHhhhcchhHHHhh
Q 027590 144 -GLNRDLSFKAEDRVENIRRIEKIEMPAV-----QCCQKEISLRCSWMCHFKC---VRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~~~~~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
..++.++|++|++...-.++.+...++. ..-................ .....++....+|.|++||+.+++
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 2456799999985321113333222210 0000000000000000000 012335567889999999999999
Q ss_pred hhhccC
Q 027590 215 MIHMNH 220 (221)
Q Consensus 215 ~~~~~~ 220 (221)
+...++
T Consensus 161 al~~~p 166 (251)
T PRK14251 161 ALAVRP 166 (251)
T ss_pred HHhcCC
Confidence 876553
No 168
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.76 E-value=1.9e-18 Score=145.60 Aligned_cols=139 Identities=20% Similarity=0.142 Sum_probs=94.3
Q ss_pred eeeeeeEecC--CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccce
Q 027590 78 KSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 78 ~~~~~~~~~~--~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
+++|+++.|+ ..++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. .+++.++
T Consensus 2 ~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 2 TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV--LVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred EEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE--EECCeehHhcCHHHHhhcEE
Confidence 4678888885 357999999999999999999999999999999999999 688999 889987743 3456799
Q ss_pred eeccChHHHHHHHHHHhcccceeee--hhhhhcccccccch-------hhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIRRIEKIEMPAVQCCQ--KEISLRCSWMCHFK-------CVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~~v~~~~~~g~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++|++...-.++.+...++..... ......... .... .......+....+|.|++||+.++++...+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLA-GAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHc-CcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999974322355555444221000 000000000 0000 001112344578999999999999987654
No 169
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.9e-19 Score=155.10 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=94.4
Q ss_pred ceeeeeeeEec----CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCceEEEEECCccccc---
Q 027590 76 VAKSTNILWHK----NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-----WRGKLTYILDGDNCRH--- 143 (221)
Q Consensus 76 ~~~~~~~~~~~----~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-----~~G~i~~~l~g~~~~~--- 143 (221)
+++++|+++.| +...+++++||+|++||+++|+|+||||||||+++|+|+++ ++|+| .++|+++..
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i--~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRM--RFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEE--EECCEECCcCCH
Confidence 57788888888 44679999999999999999999999999999999999984 56998 899998753
Q ss_pred -c----ccccceeeccChHHHH---HHHHHHhccc---cee------e-ehhhhhcccccccchhh--HHHHHHHHHHHh
Q 027590 144 -G----LNRDLSFKAEDRVENI---RRIEKIEMPA---VQC------C-QKEISLRCSWMCHFKCV--RQGTQRAFTSLH 203 (221)
Q Consensus 144 -~----~~~~ig~v~q~~~~~~---~~v~~~~~~g---~~~------~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 203 (221)
. .++.|+|++|++...+ .++.+.+... ... - .........+....... .+..++...++|
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 1 2357999999975321 1233222110 000 0 00000001111111111 123345567899
Q ss_pred hhcchhHHHhhhhhcc
Q 027590 204 EKGRSRVLLGLMIHMN 219 (221)
Q Consensus 204 ~~~~~~~~~~~~~~~~ 219 (221)
+|++||+.++++...+
T Consensus 161 gG~~QRv~iArAL~~~ 176 (330)
T PRK15093 161 EGECQKVMIAIALANQ 176 (330)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999999987654
No 170
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=9.5e-19 Score=148.81 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=96.9
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-c-----CceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-W-----RGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~-----~G~i~~~l~g~~~~~---- 143 (221)
.+.++++++++.|+...+++++||++++|++++|+|+||||||||+++|+|+++ . +|++ .++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v--~~~g~~~~~~~~~ 79 (251)
T PRK14249 2 DPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV--LLDNENIYSPNLD 79 (251)
T ss_pred CceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE--EECCEEccccccC
Confidence 456788999999988889999999999999999999999999999999999984 4 4998 889988742
Q ss_pred --cccccceeeccChHHHHHHHHHHhcccceee---e-h-hhhhcccccccch---hhHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 --GLNRDLSFKAEDRVENIRRIEKIEMPAVQCC---Q-K-EISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~---~-~-~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
.+++.++|++|++.....++.+...++.... . . ............. .......+....++.|++||+.++
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 159 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA 159 (251)
T ss_pred hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 2456799999997422223333332211000 0 0 0000000000000 001223455667899999999999
Q ss_pred hhhhccC
Q 027590 214 LMIHMNH 220 (221)
Q Consensus 214 ~~~~~~~ 220 (221)
++...+.
T Consensus 160 ral~~~p 166 (251)
T PRK14249 160 RVLAIEP 166 (251)
T ss_pred HHHhcCC
Confidence 9876553
No 171
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.2e-18 Score=146.94 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=96.4
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccccee
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLSF 151 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig~ 151 (221)
++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. .+.+.++|
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV--FLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE--EECCEEhHHCCHHHHhhheEE
Confidence 67889999998888999999999999999999999999999999999998 688999 889987643 34457999
Q ss_pred eccChHHHHH-HHHHHhcccceeee-------h-hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDRVENIR-RIEKIEMPAVQCCQ-------K-EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~~~~~~-~v~~~~~~g~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++..... ++.+....+..... . ............. .....++...++|.|+++|+.++++...++
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTR-INHLADRRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcC-CHHHHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9998632211 34443332211000 0 0000000000111 122344556778999999999999876543
No 172
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.76 E-value=1.9e-18 Score=144.65 Aligned_cols=144 Identities=19% Similarity=0.214 Sum_probs=100.4
Q ss_pred ccceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cc
Q 027590 74 STVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GL 145 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~ 145 (221)
.+++++.++++.|+. ..+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~ 86 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV--LLDGKPISQYEHKYL 86 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE--EECCCchHHcCHHHH
Confidence 456888999999864 46999999999999999999999999999999999998 688998 889987743 34
Q ss_pred cccceeeccChHHHHHHHHHHhcccceeee--hhhhh-----cccccccch-hhHHHHHHHHHHHhhhcchhHHHhhhhh
Q 027590 146 NRDLSFKAEDRVENIRRIEKIEMPAVQCCQ--KEISL-----RCSWMCHFK-CVRQGTQRAFTSLHEKGRSRVLLGLMIH 217 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~~~v~~~~~~g~~~~~--~~~~~-----~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (221)
++.++|++|++...-.++.+....+..... .+... ...+..... .......+...++|.|+++|+.++++..
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 567999999975433466665544321110 00000 000110110 1122345556788999999999999876
Q ss_pred cc
Q 027590 218 MN 219 (221)
Q Consensus 218 ~~ 219 (221)
.+
T Consensus 167 ~~ 168 (226)
T cd03248 167 RN 168 (226)
T ss_pred cC
Confidence 54
No 173
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.76 E-value=6.7e-19 Score=163.95 Aligned_cols=143 Identities=11% Similarity=0.018 Sum_probs=99.1
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc-----cccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG-----LNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~-----~~~~ 148 (221)
+++++.|+++.|++.++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|.++... .++.
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i--~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI--TINNINYNKLDHKLAAQLG 81 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE--EECCEECCCCCHHHHHHCC
Confidence 4688899999998888999999999999999999999999999999999999 688999 8899887531 2356
Q ss_pred ceeeccChHHHHH-HHHHHhcccceeee---h--------hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 149 LSFKAEDRVENIR-RIEKIEMPAVQCCQ---K--------EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~g~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
++|++|++..... ++.+....+..... . .......+....... ...++....+|.|++||+.++++.
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHH
Confidence 9999998643221 44444433221100 0 000000011001110 123455678999999999999987
Q ss_pred hccC
Q 027590 217 HMNH 220 (221)
Q Consensus 217 ~~~~ 220 (221)
..+.
T Consensus 161 ~~~p 164 (510)
T PRK09700 161 MLDA 164 (510)
T ss_pred hcCC
Confidence 6543
No 174
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.76 E-value=1.9e-18 Score=163.32 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=99.7
Q ss_pred ceeeeeeeEec-CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc----cccccce
Q 027590 76 VAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 76 ~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
-++.+|+++.| ++.++++++||++++|+.++|+|+||||||||+++|+|++|++|+| .+||.++.+ .+++.|+
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I--~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSL--KINGIELRELDPESWRKHLS 426 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEE--EECCEecccCCHHHHHhheE
Confidence 37788998644 5678999999999999999999999999999999999999888999 899998865 5778999
Q ss_pred eeccChHHHHHHHHHHhcccceeee--hhhhhcc-----ccc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIRRIEKIEMPAVQCCQ--KEISLRC-----SWM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~~v~~~~~~g~~~~~--~~~~~~~-----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
||+|++.-.-.++.+...+|.-... ...+... .+. .........+.+.-..+|+|+|||+.++++.-.+
T Consensus 427 ~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred EecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999975444466666555431000 0000000 000 0001111222233346899999999999987654
No 175
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.4e-18 Score=150.63 Aligned_cols=142 Identities=11% Similarity=0.126 Sum_probs=97.8
Q ss_pred ceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccC---ceEEEEECCccccc----cc
Q 027590 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWR---GKLTYILDGDNCRH----GL 145 (221)
Q Consensus 76 ~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~---G~i~~~l~g~~~~~----~~ 145 (221)
++++.|+++.|+. .++++++||++++||+++|+|+||||||||+++|+|++ |++ |++ +++|.++.. .+
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i--~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI--TVDGITLTAKTVWDI 82 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE--EECCEECCcCCHHHH
Confidence 5778899999853 46999999999999999999999999999999999999 555 898 899998753 34
Q ss_pred cccceeeccChHHHH--HHHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 146 NRDLSFKAEDRVENI--RRIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~--~~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++.+||++|++...+ .++.+....+... .. ........+...... .+..++....+|.|+++|+.++++...+
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGM-LDYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCC-hhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 567999999985322 1455544332100 00 000000011111111 2234555678899999999999987665
Q ss_pred C
Q 027590 220 H 220 (221)
Q Consensus 220 ~ 220 (221)
+
T Consensus 162 P 162 (282)
T PRK13640 162 P 162 (282)
T ss_pred C
Confidence 3
No 176
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.76 E-value=3.9e-19 Score=159.15 Aligned_cols=133 Identities=20% Similarity=0.153 Sum_probs=90.9
Q ss_pred ecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cc----cccceeeccC
Q 027590 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GL----NRDLSFKAED 155 (221)
Q Consensus 85 ~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~----~~~ig~v~q~ 155 (221)
.|+.+.+++++||++++||+++|+||||||||||+++|+|++ |++|++ +++|+++.. .+ ++.++|++|+
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I--~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI--FIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE--EECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 467788999999999999999999999999999999999999 688999 899998864 22 5789999998
Q ss_pred hHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 156 RVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 156 ~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
....-. ++.+...++. ............+...... ....++...++|+|++||+.++++...+.
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL-~~~~~~~p~~LSGGq~QRV~lARAL~~~p 148 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGL-EEYEHRYPDELSGGMQQRVGLARALAAEP 148 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-chhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 532211 2333222210 0000000101111111111 23456667789999999999999887653
No 177
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.2e-18 Score=151.22 Aligned_cols=144 Identities=15% Similarity=0.090 Sum_probs=97.9
Q ss_pred cccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc---
Q 027590 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH--- 143 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~--- 143 (221)
.++++++.++++.|+...+++++||++++|++++|+|+||||||||+++|+|+++ ++|++ .++|.++..
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I--~i~G~~i~~~~~ 113 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL--TFRGKNVYDADV 113 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE--EECCEEcccccc
Confidence 3457889999999988889999999999999999999999999999999999973 57999 889988742
Q ss_pred ---cccccceeeccChHHHHHHHHHHhcccc----eeeehhhhhcccccccchh---hHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 ---GLNRDLSFKAEDRVENIRRIEKIEMPAV----QCCQKEISLRCSWMCHFKC---VRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 ---~~~~~ig~v~q~~~~~~~~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
..++.++|++|++.....++.+....+. ... ........+...... .....++....+|.|++||+.++
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 3456799999986321113333222210 000 000000001101100 01234555678999999999999
Q ss_pred hhhhcc
Q 027590 214 LMIHMN 219 (221)
Q Consensus 214 ~~~~~~ 219 (221)
++...+
T Consensus 193 raL~~~ 198 (285)
T PRK14254 193 RAIAPD 198 (285)
T ss_pred HHHHcC
Confidence 987654
No 178
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.3e-18 Score=149.68 Aligned_cols=143 Identities=13% Similarity=0.102 Sum_probs=95.9
Q ss_pred ccceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccc
Q 027590 74 STVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLN 146 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~ 146 (221)
.+++++.|+++.|+. ..+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|.++.. ..+
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i--~~~g~~~~~~~~~~~~ 82 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI--FYNNQAITDDNFEKLR 82 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEECCcCCHHHHH
Confidence 346888999999964 45999999999999999999999999999999999998 588999 899988743 345
Q ss_pred ccceeeccChHHHHH--HHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 147 RDLSFKAEDRVENIR--RIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 147 ~~ig~v~q~~~~~~~--~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+.++|++|++...+. .+.+....+.. ...........+...... ....++....+|.|+++|+.++++...+
T Consensus 83 ~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (269)
T PRK13648 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDM-LERADYEPNALSGGQKQRVAIAGVLALN 160 (269)
T ss_pred hheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCC-chhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 679999999742221 22222222110 000000000001101111 1223445668899999999999987654
No 179
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=9.3e-19 Score=148.70 Aligned_cols=142 Identities=14% Similarity=0.113 Sum_probs=94.4
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc------
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH------ 143 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~------ 143 (221)
.+++.|+++.|+...+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|.++..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i--~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV--LLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE--EECCEEccccccchH
Confidence 4678899999987789999999999999999999999999999999999863 47999 889988752
Q ss_pred cccccceeeccChHHHHHHHHHHhcccceee-----ehhhhhcccccccch---hhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 144 GLNRDLSFKAEDRVENIRRIEKIEMPAVQCC-----QKEISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 144 ~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
.+++.++|++|++.....++.+....+.... ............... ......++....++.|++||+.++++
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARA 160 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 2456799999986321123333332211000 000000000000000 00122334456789999999999998
Q ss_pred hhcc
Q 027590 216 IHMN 219 (221)
Q Consensus 216 ~~~~ 219 (221)
...+
T Consensus 161 l~~~ 164 (250)
T PRK14240 161 LAVE 164 (250)
T ss_pred HhcC
Confidence 7654
No 180
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.1e-18 Score=150.58 Aligned_cols=140 Identities=12% Similarity=0.151 Sum_probs=96.0
Q ss_pred eeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc------ccccc
Q 027590 77 AKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------GLNRD 148 (221)
Q Consensus 77 ~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------~~~~~ 148 (221)
++++|+++.|+ ...+++++||++++||+++|+|+||||||||+++|+|++ |.+|++ .++|.++.. .+++.
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV--LIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE--EECCEECccccchHHHHHhh
Confidence 56788999995 467999999999999999999999999999999999999 578999 899988742 24567
Q ss_pred ceeeccChHHH-HH-HHHHHhcccceee--e--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVEN-IR-RIEKIEMPAVQCC--Q--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~-~~-~v~~~~~~g~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|+|++|++... .. ++.+....+.... . ........+..... .....++...++|.|++||+.++++...+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVG-MEGFENKPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-CchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999997422 21 4555443321100 0 00000000110111 11233455678999999999999987654
No 181
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.3e-18 Score=150.01 Aligned_cols=143 Identities=14% Similarity=0.070 Sum_probs=97.1
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc-----
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH----- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~----- 143 (221)
++++++|+++.|+...+++++||++++|++++|+|+||||||||+++|+|+++ ++|++ .++|.++..
T Consensus 23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i--~~~g~~~~~~~~~~ 100 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI--LYRDQNIFDKSYSV 100 (271)
T ss_pred eEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE--EECCEEcccccccH
Confidence 36888999999988889999999999999999999999999999999999974 67999 889988742
Q ss_pred -cccccceeeccChHHHHHHHHHHhcccce-----eeehhhhhcccccccc---hhhHHHHHHHHHHHhhhcchhHHHhh
Q 027590 144 -GLNRDLSFKAEDRVENIRRIEKIEMPAVQ-----CCQKEISLRCSWMCHF---KCVRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~~~~~v~~~~~~g~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
.+++.++|++|++.....++.+...++.. ................ ........+....+|.|++||+.+++
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence 34567999999964222233333322110 0000000000000000 00112334556778999999999999
Q ss_pred hhhcc
Q 027590 215 MIHMN 219 (221)
Q Consensus 215 ~~~~~ 219 (221)
+...+
T Consensus 181 aL~~~ 185 (271)
T PRK14238 181 CLAIE 185 (271)
T ss_pred HHHcC
Confidence 87654
No 182
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.75 E-value=9.3e-19 Score=162.69 Aligned_cols=143 Identities=13% Similarity=0.106 Sum_probs=99.1
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----ccccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~ 148 (221)
++++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ |++|++ .++|.++.. ..++.
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI--LYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCCCCHHHHHhCC
Confidence 4678899999998888999999999999999999999999999999999998 688999 889988743 12457
Q ss_pred ceeeccChHHHHH-HHHHHhcccceeee--hh------hhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENIR-RIEKIEMPAVQCCQ--KE------ISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~g~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++|++..... ++.+...++..... .. ............. ....++...++|.|++||+.++++...+
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNL-RFSSDKLVGELSIGEQQMVEIAKVLSFE 159 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCC-CCCccCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999998643222 45555444321000 00 0000000000000 0112445678999999999999987655
Q ss_pred C
Q 027590 220 H 220 (221)
Q Consensus 220 ~ 220 (221)
.
T Consensus 160 p 160 (501)
T PRK10762 160 S 160 (501)
T ss_pred C
Confidence 3
No 183
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.7e-18 Score=150.16 Aligned_cols=140 Identities=21% Similarity=0.224 Sum_probs=96.0
Q ss_pred ceeeeeeeEecC----CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-c-----CceEEEEECCccccc--
Q 027590 76 VAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-W-----RGKLTYILDGDNCRH-- 143 (221)
Q Consensus 76 ~~~~~~~~~~~~----~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~-----~G~i~~~l~g~~~~~-- 143 (221)
+++++|++.+|. .++++++|||++.+||+++|+|+|||||||++++|+|++| + +|+| .|+|+++..
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i--~f~g~~l~~l~ 78 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI--LFDGKDLLSLS 78 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEE--EECCcccccCC
Confidence 356777777663 3579999999999999999999999999999999999996 3 3666 899998753
Q ss_pred ------cccccceeeccChHHHH-------HHHHHHhccccee--ee----hhhhhcccccccchhhHHHHHHHHHHHhh
Q 027590 144 ------GLNRDLSFKAEDRVENI-------RRIEKIEMPAVQC--CQ----KEISLRCSWMCHFKCVRQGTQRAFTSLHE 204 (221)
Q Consensus 144 ------~~~~~ig~v~q~~~~~~-------~~v~~~~~~g~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 204 (221)
.+.++|+|+|||+..-+ .++.|........ -. .+.+.+... -.....+..++.--++|+
T Consensus 79 ~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~V--gi~~~~~~~~~YPhelSG 156 (316)
T COG0444 79 EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELV--GIPDPERRLKSYPHELSG 156 (316)
T ss_pred HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHc--CCCCHHHHHhhCCcccCC
Confidence 24578999999963222 2455554431110 00 111111111 112223455666678899
Q ss_pred hcchhHHHhhhhhcc
Q 027590 205 KGRSRVLLGLMIHMN 219 (221)
Q Consensus 205 ~~~~~~~~~~~~~~~ 219 (221)
||+||++++.+...+
T Consensus 157 GMrQRV~IAmala~~ 171 (316)
T COG0444 157 GMRQRVMIAMALALN 171 (316)
T ss_pred cHHHHHHHHHHHhCC
Confidence 999999999987654
No 184
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.75 E-value=5.5e-18 Score=136.61 Aligned_cols=129 Identities=19% Similarity=0.152 Sum_probs=101.3
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeec
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKA 153 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~ 153 (221)
+...++.|.|+..+- ..+++++.||+++|+||||||||||+++|+|+. |.+|.+ .++|++... ...+-++++|
T Consensus 2 l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i--~i~g~d~t~~~P~~RPVSmlF 77 (231)
T COG3840 2 LALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI--LINGVDHTASPPAERPVSMLF 77 (231)
T ss_pred ccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceE--EEcCeecCcCCcccCChhhhh
Confidence 456778888976554 567889999999999999999999999999998 899999 899999875 5667799999
Q ss_pred cChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHH-------------HHHhhhcchhHHHhhhhhcc
Q 027590 154 EDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAF-------------TSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~~~~~~ 219 (221)
|+.+-... +|.+.+.+|..|... ....+++.++.++ .++|+|+|||+++++...++
T Consensus 78 QEnNLFaHLtV~qNigLGl~P~Lk----------L~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~ 147 (231)
T COG3840 78 QENNLFAHLTVAQNIGLGLSPGLK----------LNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVRE 147 (231)
T ss_pred hccccchhhhhhhhhcccCCcccc----------cCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhcc
Confidence 98876655 788888888776433 2334444444444 45677999999999865543
No 185
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.75 E-value=7.3e-19 Score=143.51 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=88.8
Q ss_pred cCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc------cccccceeeccChHH
Q 027590 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------GLNRDLSFKAEDRVE 158 (221)
Q Consensus 86 ~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------~~~~~ig~v~q~~~~ 158 (221)
|+...+++++||++++||+++|+||||||||||+++|+|++ |++|++ .++|.++.. .+++.++|++|++..
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 79 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV--LIDGEPLDYSRKGLLERRQRVGLVFQDPDD 79 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeE--EECCEEccccccchHHHHhhEEEEecChhh
Confidence 35667999999999999999999999999999999999998 588999 889988741 235679999999731
Q ss_pred -HH-HHHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 159 -NI-RRIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 159 -~~-~~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
.. .++.+...++... .. ........+..... ..+..++...++|.|++||+.++++...++
T Consensus 80 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrv~laral~~~p 146 (190)
T TIGR01166 80 QLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVG-ASGLRERPTHCLSGGEKKRVAIAGAVAMRP 146 (190)
T ss_pred ccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-chhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 11 2444443332100 00 00000011111111 123345667889999999999999876543
No 186
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.75 E-value=3.1e-18 Score=161.57 Aligned_cols=142 Identities=17% Similarity=0.135 Sum_probs=99.8
Q ss_pred ceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 76 ~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
-++.+|++++|++ .++++++||++++|+.++|+|+||||||||+++|+|++ |++|+| .+||.++.+ .+++.
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I--~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI--LLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE--EECCEEhhhcCHHHHHhh
Confidence 4789999999964 57999999999999999999999999999999999999 678999 899998864 56788
Q ss_pred ceeeccChHHHHHHHHHHhcccceeeehhhhhccc--------cc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCS--------WM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++|++.-.-.++.+...++.-....-.+.... +. ...........+.-..+|+|+|||..++++...+
T Consensus 419 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred ceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 99999997544456666666543210000000000 00 0000001111111245899999999999987654
No 187
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.75 E-value=3.5e-18 Score=142.38 Aligned_cols=138 Identities=19% Similarity=0.162 Sum_probs=94.1
Q ss_pred eeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccc
Q 027590 77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDL 149 (221)
Q Consensus 77 ~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~i 149 (221)
+++.++++.|+. ..+++++||++++|++++|+||||||||||+++|+|++ |.+|++ .++|.++.. ..++.+
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV--LLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE--EECCEEhHHCCHHHHHhhE
Confidence 467788888864 57999999999999999999999999999999999998 588999 889987643 235679
Q ss_pred eeeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHH-----------HHHHHhhhcchhHHHhhhhhc
Q 027590 150 SFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQR-----------AFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 150 g~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~ 218 (221)
+|++|++.....++.+...+....... .....+...... .+..+. ....+|.|++||+.++++...
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~--~~~~~~l~~~~l-~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADD--ERILRAAELAGV-TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCH--HHHHHHHHHcCc-HHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 999999753323555554432111000 000000000000 111111 124899999999999998765
Q ss_pred c
Q 027590 219 N 219 (221)
Q Consensus 219 ~ 219 (221)
+
T Consensus 158 ~ 158 (220)
T cd03245 158 D 158 (220)
T ss_pred C
Confidence 4
No 188
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1.5e-18 Score=146.01 Aligned_cols=140 Identities=19% Similarity=0.119 Sum_probs=94.9
Q ss_pred eeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccccee
Q 027590 78 KSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLSF 151 (221)
Q Consensus 78 ~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig~ 151 (221)
++.++++.|+ ...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. .+++.++|
T Consensus 2 ~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v--~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI--LIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred EEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE--EECCEEhhhCCHHHHHhhEEE
Confidence 4678888885 567999999999999999999999999999999999998 588999 899988753 34567999
Q ss_pred eccChHHHHHHHHHHhcccceeee--hhhhhcccccccch-------hhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDRVENIRRIEKIEMPAVQCCQ--KEISLRCSWMCHFK-------CVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~~~~~~~v~~~~~~g~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++...-.++.+....+..... ......... .... .......+....+|.|+++|+.++++...++
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAA-QIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHc-CcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999975433356655544321100 000000000 0000 0001122234579999999999999876653
No 189
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.8e-18 Score=147.27 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=97.6
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~---- 143 (221)
.++++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~~~~~~~~ 81 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI--LYNGENIMDSGAD 81 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE--EECCEEccccccc
Confidence 446888999999988889999999999999999999999999999999999863 26999 889988743
Q ss_pred --cccccceeeccChHHHHHHHHHHhccccee-----eehhhhhcccccccc---hhhHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 --GLNRDLSFKAEDRVENIRRIEKIEMPAVQC-----CQKEISLRCSWMCHF---KCVRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
..++.++|++|++.....++.+....+... ............... ....+..++....+|.|+++|+.++
T Consensus 82 ~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14261 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIA 161 (253)
T ss_pred hhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHH
Confidence 235679999998643222444433322100 000000000000000 0011234566778999999999999
Q ss_pred hhhhcc
Q 027590 214 LMIHMN 219 (221)
Q Consensus 214 ~~~~~~ 219 (221)
++...+
T Consensus 162 ral~~~ 167 (253)
T PRK14261 162 RTLAVN 167 (253)
T ss_pred HHHhcC
Confidence 987654
No 190
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.75 E-value=6.3e-18 Score=142.52 Aligned_cols=138 Identities=17% Similarity=0.119 Sum_probs=93.6
Q ss_pred eeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccc
Q 027590 78 KSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDL 149 (221)
Q Consensus 78 ~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~i 149 (221)
++.|+++.|+. .++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.+
T Consensus 2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI--LLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred eEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE--EECCEehhhcCHHHHHhhE
Confidence 46788888853 46999999999999999999999999999999999998 588999 899987643 234579
Q ss_pred eeeccChHHHHHHHHHHhcccceeeehhhhhcccccccchh----------hHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 150 SFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKC----------VRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 150 g~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+|++|++...-.++.+....+...... ............ ..........++|.|+++|+.++++...+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 80 GLVSQEPVLFDGTIAENIRYGKPDATD--EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EEECCchhhhhhhHHHHhhccCCCCCH--HHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 999999754334666665543211000 000000000000 00011222457899999999999987654
No 191
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.1e-18 Score=150.86 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=97.7
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~---- 143 (221)
+.++.+.|++++|+..++++++||++++||+++|+|+||||||||+++|+|+++ .+|++ .++|.++..
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i--~~~g~~i~~~~~~ 96 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV--LLGGRSIFNYRDV 96 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE--EECCEEccccchh
Confidence 347889999999988899999999999999999999999999999999999984 47999 889988743
Q ss_pred -cccccceeeccChHHHHHHHHHHhcccce-----eeehhhhhcccccccchh---hHHHHHHHHHHHhhhcchhHHHhh
Q 027590 144 -GLNRDLSFKAEDRVENIRRIEKIEMPAVQ-----CCQKEISLRCSWMCHFKC---VRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~~~~~v~~~~~~g~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
.+++.++|++|++.....++.+...++.. .................. ......+....+|.|++||+.+++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 24567999999864221233333222110 000000000000000000 011233456789999999999999
Q ss_pred hhhccC
Q 027590 215 MIHMNH 220 (221)
Q Consensus 215 ~~~~~~ 220 (221)
+...++
T Consensus 177 al~~~p 182 (276)
T PRK14271 177 TLAVNP 182 (276)
T ss_pred HHhcCC
Confidence 876543
No 192
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.75 E-value=9.5e-19 Score=147.74 Aligned_cols=78 Identities=21% Similarity=0.208 Sum_probs=67.0
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCceEEEEECCccccc----c-ccccc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILDGDNCRH----G-LNRDL 149 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l---~~~G~i~~~l~g~~~~~----~-~~~~i 149 (221)
+++|+++.|+...+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. . .+..+
T Consensus 2 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i--~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI--LFKGQDLLELEPDERARAGL 79 (243)
T ss_pred eEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE--EECCEecCCCCHHHhhccce
Confidence 5678888898788999999999999999999999999999999999994 578999 899988753 1 23448
Q ss_pred eeeccChH
Q 027590 150 SFKAEDRV 157 (221)
Q Consensus 150 g~v~q~~~ 157 (221)
+|++|++.
T Consensus 80 ~~v~q~~~ 87 (243)
T TIGR01978 80 FLAFQYPE 87 (243)
T ss_pred Eeeecccc
Confidence 99999863
No 193
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.5e-18 Score=147.51 Aligned_cols=143 Identities=14% Similarity=0.105 Sum_probs=95.9
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc---c---cCceEEEEECCccccc-----
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---H---WRGKLTYILDGDNCRH----- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l---~---~~G~i~~~l~g~~~~~----- 143 (221)
+++++.|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+. | ++|++ .++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i--~~~g~~~~~~~~~~ 81 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI--VYNGHNIYSPRTDT 81 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceE--EECCEECcCcccch
Confidence 3678899999998888999999999999999999999999999999999984 3 37999 899988742
Q ss_pred -cccccceeeccChHHHHHHHHHHhcccce--ee--eh-hhhhcccccccch---hhHHHHHHHHHHHhhhcchhHHHhh
Q 027590 144 -GLNRDLSFKAEDRVENIRRIEKIEMPAVQ--CC--QK-EISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~~~~~v~~~~~~g~~--~~--~~-~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
.+++.++|++|++.....++.+...++.. .. .. .......+..... ...+...+....+|.|+++|+.+++
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIAR 161 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHH
Confidence 24567999999864221234433322110 00 00 0000000000000 0012334556779999999999999
Q ss_pred hhhcc
Q 027590 215 MIHMN 219 (221)
Q Consensus 215 ~~~~~ 219 (221)
+...+
T Consensus 162 al~~~ 166 (252)
T PRK14239 162 VLATS 166 (252)
T ss_pred HHhcC
Confidence 87654
No 194
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.75 E-value=3e-18 Score=161.38 Aligned_cols=142 Identities=18% Similarity=0.130 Sum_probs=102.8
Q ss_pred ceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccc
Q 027590 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~i 149 (221)
-++.+|++++|+ +.++++++||++++||.++|+||||||||||+++|.|++ |.+|+| ++||.++.+ .+++.|
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I--~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI--LIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE--EECCEehhhcCHHHHHHhc
Confidence 378999999998 689999999999999999999999999999999999999 678999 789999976 678999
Q ss_pred eeeccChHHHHHHHHHHhcccceeeeh--hhh---h--ccccc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 150 SFKAEDRVENIRRIEKIEMPAVQCCQK--EIS---L--RCSWM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 150 g~v~q~~~~~~~~v~~~~~~g~~~~~~--~~~---~--~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+||+|++.-.-.++.+...+|+--... ..+ . ...+. ...+.-...+.+.=..+|+|+|||+.++++.-.+
T Consensus 406 ~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred cEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 999999855556677776665432110 000 0 00000 0000011112222346888999999999986544
No 195
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.75 E-value=2e-18 Score=145.81 Aligned_cols=140 Identities=19% Similarity=0.161 Sum_probs=96.6
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeecc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKAE 154 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~q 154 (221)
++.++++.|+..++++++||++.+|++++|+|+||||||||+++|+|++ |.+|++ .++|.++.. ..++.++|++|
T Consensus 2 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i--~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 2 EIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI--RLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred EEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEEcCcCChhhcCEEEEec
Confidence 4678888898888999999999999999999999999999999999998 578999 889988754 33467999999
Q ss_pred ChHHHHH-HHHHHhccccee--ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 155 DRVENIR-RIEKIEMPAVQC--CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 155 ~~~~~~~-~v~~~~~~g~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++..... ++.+....+... .. ........+..... ..+..++....+|.|+++|+.++++...++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~lS~G~~qrl~laral~~~p 149 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQ-LEGLGDRYPNQLSGGQRQRVALARALAVEP 149 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcC-CHhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 8743321 444433321100 00 00000011111111 123345556789999999999999876653
No 196
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.5e-18 Score=165.37 Aligned_cols=143 Identities=18% Similarity=0.229 Sum_probs=98.6
Q ss_pred cceeeeeeeEecC-----------CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccc
Q 027590 75 TVAKSTNILWHKN-----------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR 142 (221)
Q Consensus 75 ~~~~~~~~~~~~~-----------~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~ 142 (221)
++++++|+++.|+ ...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| +++|+++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I--~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEI--IFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEE--EECCEECC
Confidence 4688889998885 146899999999999999999999999999999999999 688999 88998774
Q ss_pred c-------cccccceeeccChHHHH---HHHHHHhcc-----cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcc
Q 027590 143 H-------GLNRDLSFKAEDRVENI---RRIEKIEMP-----AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGR 207 (221)
Q Consensus 143 ~-------~~~~~ig~v~q~~~~~~---~~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (221)
. .+++.|+|++|++...+ .++.+.... +...-.........+........+..++...+||+|++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr 469 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR 469 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 3 23567999999863111 133333222 11000000011111221222222345667789999999
Q ss_pred hhHHHhhhhhcc
Q 027590 208 SRVLLGLMIHMN 219 (221)
Q Consensus 208 ~~~~~~~~~~~~ 219 (221)
||+.++++...+
T Consensus 470 QRv~iAraL~~~ 481 (623)
T PRK10261 470 QRICIARALALN 481 (623)
T ss_pred HHHHHHHHHhcC
Confidence 999999987654
No 197
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.75 E-value=9.2e-19 Score=149.40 Aligned_cols=140 Identities=17% Similarity=0.203 Sum_probs=94.9
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccccee
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLSF 151 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig~ 151 (221)
+++.|+++.|+...+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++.. .+++.++|
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV--DLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEE--EECCEEcccCCHHHHhhheEE
Confidence 45778888998888999999999999999999999999999999999998 588999 889988753 23457999
Q ss_pred eccChHHHH-HHHHHHhcccceeeeh--------hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 152 KAEDRVENI-RRIEKIEMPAVQCCQK--------EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 152 v~q~~~~~~-~~v~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++.... .++.+....+...... ............. ..+..++....+|.|+++|+.++++...+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTE-LSHLADRDMSTLSGGERQRVHVARALAQE 155 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcC-cHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999863211 1334333322110000 0000000000111 12233445667888999999999987654
No 198
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.4e-18 Score=150.87 Aligned_cols=145 Identities=14% Similarity=0.076 Sum_probs=97.7
Q ss_pred cccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc---c---cCceEEEEECCccccc---
Q 027590 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---H---WRGKLTYILDGDNCRH--- 143 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l---~---~~G~i~~~l~g~~~~~--- 143 (221)
..++++++++++.|+...+++++||++.+|++++|+|+||||||||+++|+|++ | ++|++ .++|.++..
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I--~~~g~~i~~~~~ 113 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL--MFDGEDIYGKFT 113 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEE--EECCEEhhhccc
Confidence 344688899999998778999999999999999999999999999999999985 3 68999 889988642
Q ss_pred ---cccccceeeccChHHHHHHHHHHhccccee--e---ehhhhhcccccccch---hhHHHHHHHHHHHhhhcchhHHH
Q 027590 144 ---GLNRDLSFKAEDRVENIRRIEKIEMPAVQC--C---QKEISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLL 212 (221)
Q Consensus 144 ---~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~--~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~ 212 (221)
.+++.++|++|++...-.++.+...++... . .........+..... ...+...+....+|.|++||+.+
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 193 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCV 193 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHH
Confidence 245679999998642212344433322100 0 000000000000000 01123345577899999999999
Q ss_pred hhhhhcc
Q 027590 213 GLMIHMN 219 (221)
Q Consensus 213 ~~~~~~~ 219 (221)
+++...+
T Consensus 194 AraL~~~ 200 (286)
T PRK14275 194 ARTLAVE 200 (286)
T ss_pred HHHHhcC
Confidence 9987654
No 199
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.75 E-value=1.9e-18 Score=140.22 Aligned_cols=110 Identities=25% Similarity=0.344 Sum_probs=83.8
Q ss_pred eeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccceeec
Q 027590 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLSFKA 153 (221)
Q Consensus 79 ~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig~v~ 153 (221)
++|+++.|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. .++..++|++
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v--~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI--LLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCcCCHHHHHHHHhHHH
Confidence 467888887778999999999999999999999999999999999998 588999 889988753 2334577777
Q ss_pred cChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
| +.+. +|. .+...+....++.|+++|+.++++...++
T Consensus 80 q--------~l~~--~gl--------------------~~~~~~~~~~LS~G~~qrl~laral~~~p 116 (180)
T cd03214 80 Q--------ALEL--LGL--------------------AHLADRPFNELSGGERQRVLLARALAQEP 116 (180)
T ss_pred H--------HHHH--cCC--------------------HhHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 6 1111 011 11123345789999999999998776543
No 200
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=1.7e-18 Score=142.14 Aligned_cols=138 Identities=12% Similarity=0.084 Sum_probs=91.0
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccC
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~ 155 (221)
++.++++++|+...+++ +||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++.....+.++|++|+
T Consensus 2 l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI--YYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred eEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCcccChhhhhhEEeccCC
Confidence 56778888887655665 99999999999999999999999999999998 688999 889988754334558899886
Q ss_pred hHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 156 RVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 156 ~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
...... ++.+......... ........+..... ..+..++....++.|+++|+.++++...+
T Consensus 79 ~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~~rl~la~al~~~ 141 (195)
T PRK13541 79 LGLKLEMTVFENLKFWSEIY-NSAETLYAAIHYFK-LHDLLDEKCYSLSSGMQKIVAIARLIACQ 141 (195)
T ss_pred cCCCccCCHHHHHHHHHHhc-ccHHHHHHHHHHcC-CHhhhccChhhCCHHHHHHHHHHHHHhcC
Confidence 521111 2222221110000 00000011111111 12334566789999999999999877654
No 201
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.6e-18 Score=141.20 Aligned_cols=139 Identities=13% Similarity=0.125 Sum_probs=92.9
Q ss_pred eeeeeeeEecCCcc--ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeec
Q 027590 77 AKSTNILWHKNSVD--KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA 153 (221)
Q Consensus 77 ~~~~~~~~~~~~~~--~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~ 153 (221)
+.+.+++.+|..+. +++++|++|.+||+++++||||||||||+++++|+. |..|+| .++|+.+.. -..+-|.||
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i--~l~~r~i~g-PgaergvVF 80 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI--QLNGRRIEG-PGAERGVVF 80 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE--EECCEeccC-CCccceeEe
Confidence 45667778887766 999999999999999999999999999999999999 688999 899998874 233458999
Q ss_pred cChHHH-----HHHHHHHhcc-cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVEN-----IRRIEKIEMP-AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~-----~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|+..-. +..++.-.++ |.-.. ............ ....+..++.+.++|+|||||+-++++...++
T Consensus 81 Q~~~LlPWl~~~dNvafgL~l~Gi~k~-~R~~~a~q~l~~-VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 81 QNEALLPWLNVIDNVAFGLQLRGIEKA-QRREIAHQMLAL-VGLEGAEHKYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred ccCccchhhHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHH-hCcccccccceEeecchHHHHHHHHHHhhcCc
Confidence 985321 1233332222 11100 000000000000 01111224456678899999999999887765
No 202
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.1e-18 Score=162.41 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=99.4
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc---cCceEEEEECCccccc-----ccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKLTYILDGDNCRH-----GLN 146 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~---~~G~i~~~l~g~~~~~-----~~~ 146 (221)
++++++|+++.|++.++++++||++++|++++|+||||||||||+|+|+|+++ ++|++ .++|.++.. ..+
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i--~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI--IFEGEELQASNIRDTER 81 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE--EECCEECCCCCHHHHHH
Confidence 46889999999988889999999999999999999999999999999999985 58999 889988753 124
Q ss_pred ccceeeccChHHHHH-HHHHHhcccceee-----e--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 147 RDLSFKAEDRVENIR-RIEKIEMPAVQCC-----Q--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 147 ~~ig~v~q~~~~~~~-~v~~~~~~g~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
+.+||++|++..... ++.+...++.... . ........+...... ....++.+..+|.|++||+.++++...
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL-DINPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCC-CCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 679999998642222 4555444322100 0 000001111111111 112345678899999999999998765
Q ss_pred c
Q 027590 219 N 219 (221)
Q Consensus 219 ~ 219 (221)
+
T Consensus 161 ~ 161 (506)
T PRK13549 161 Q 161 (506)
T ss_pred C
Confidence 4
No 203
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=2e-18 Score=142.99 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=92.3
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeecc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKAE 154 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~q 154 (221)
+++|+++.|+... .++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.++|++|
T Consensus 2 ~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i--~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 2 RLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV--LINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred EEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEEcCcCCHhHccEEEEec
Confidence 4677888887544 3999999999999999999999999999999999 588999 889988753 23467999999
Q ss_pred ChHHHHH-HHHHHhcccceee---eh-hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 155 DRVENIR-RIEKIEMPAVQCC---QK-EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 155 ~~~~~~~-~v~~~~~~g~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++..... ++.+....+.... .. .......+..... .....++....+|.|++||+.++++...+
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrv~ia~al~~~ 146 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVG-LAGLEKRLPGELSGGERQRVALARVLVRD 146 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcC-CHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 9753222 4555444322110 00 0000001111111 12234455678999999999999987654
No 204
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.75 E-value=6.9e-18 Score=162.44 Aligned_cols=143 Identities=20% Similarity=0.168 Sum_probs=102.3
Q ss_pred cceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
.-++.+|++++|+. .++++++||++++|+.++|+|+||||||||+++|+|++ |++|+| .+||.++.+ .+++
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I--~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV--LLDGVDIRQIDPADLRR 539 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEEhhhCCHHHHHh
Confidence 35788999999953 56999999999999999999999999999999999999 688999 899999875 5788
Q ss_pred cceeeccChHHHHHHHHHHhcccceee--ehhhhhccc-----cc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 148 DLSFKAEDRVENIRRIEKIEMPAVQCC--QKEISLRCS-----WM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~g~~~~--~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.++||+|++.-.-.++.+...++.-.. ....+.... +. ...........+.-..+|+|+|||..++++...+
T Consensus 540 ~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 540 NIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred ccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999998765567887776653211 000000000 00 0000001111122245899999999999987654
No 205
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1.9e-18 Score=145.26 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=93.5
Q ss_pred eeeeeeEecCCc--cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccce
Q 027590 78 KSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 78 ~~~~~~~~~~~~--~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
++.|+++.|+.. .+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.++
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 2 EFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI--LIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred EEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE--EECCEEhhhCCHHHHHhhEE
Confidence 467888888654 7999999999999999999999999999999999998 688999 899987743 3456799
Q ss_pred eeccChHHHHHHHHHHhcccceeee-h-hhhh-----cccccccc-hhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIRRIEKIEMPAVQCCQ-K-EISL-----RCSWMCHF-KCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~~v~~~~~~g~~~~~-~-~~~~-----~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++|++...-.++.+...+...... . .... ...+.... .............++.|++||+.++++...+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999864332355555444221100 0 0000 00000000 0000111233457899999999999987654
No 206
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.75 E-value=1.1e-18 Score=150.66 Aligned_cols=138 Identities=17% Similarity=0.116 Sum_probs=94.4
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-cc--------CceEEEEECCccccc----
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW--------RGKLTYILDGDNCRH---- 143 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~--------~G~i~~~l~g~~~~~---- 143 (221)
++++|+++.|+...+++++||++++|++++|+|+||||||||+++|+|++ |+ +|++ .++|.++..
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i--~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDV--TLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEE--EECCEEcccCCHH
Confidence 67888999998888999999999999999999999999999999999998 45 7999 899988753
Q ss_pred cccccceeeccChHHHH-HHHHHHhcccceeee---hh-----hhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhh
Q 027590 144 GLNRDLSFKAEDRVENI-RRIEKIEMPAVQCCQ---KE-----ISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 144 ~~~~~ig~v~q~~~~~~-~~v~~~~~~g~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
.+++.++|++|++.... .++.+....+..... .. ............ ..+..++....+|.|++||+.+++
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG-ATALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcC-cHhhhcCCcccCCHHHHHHHHHHH
Confidence 34456899999864222 245554433221110 00 000000000000 112233445678889999999998
Q ss_pred hhh
Q 027590 215 MIH 217 (221)
Q Consensus 215 ~~~ 217 (221)
+..
T Consensus 159 al~ 161 (272)
T PRK13547 159 VLA 161 (272)
T ss_pred HHh
Confidence 776
No 207
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.75 E-value=3.9e-18 Score=164.61 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=101.1
Q ss_pred cceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccc
Q 027590 75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLN 146 (221)
Q Consensus 75 ~~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~ 146 (221)
..++.+|++++|++ .++++++||++++||.++|+||||||||||+++|+|++ |++|+| .+||.++.+ .++
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I--~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV--LLDGVPLVQYDHHYLH 554 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE--EECCEEHHhcCHHHHH
Confidence 45889999999963 46999999999999999999999999999999999999 688999 899999864 577
Q ss_pred ccceeeccChHHHHHHHHHHhcccceeee--hhhhhcc-----ccc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 147 RDLSFKAEDRVENIRRIEKIEMPAVQCCQ--KEISLRC-----SWM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 147 ~~ig~v~q~~~~~~~~v~~~~~~g~~~~~--~~~~~~~-----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
+.|+|++|++.-.-.++.+...++.-... ....... .+. ...........+.-..+|+|+|||+.++++...
T Consensus 555 ~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 88999999985544566666555431110 0000000 000 000001111222234689999999999998765
Q ss_pred c
Q 027590 219 N 219 (221)
Q Consensus 219 ~ 219 (221)
+
T Consensus 635 ~ 635 (711)
T TIGR00958 635 K 635 (711)
T ss_pred C
Confidence 4
No 208
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.2e-18 Score=147.77 Aligned_cols=144 Identities=13% Similarity=0.019 Sum_probs=97.0
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~---- 143 (221)
..++.+++.++.|+...+++++||++++|++++|+|+||||||||+++|+|+++ .+|++ .++|+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i--~~~g~~i~~~~~~ 83 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV--HFLGQDVYGKGVD 83 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE--EECCEeccccccc
Confidence 346777788888988889999999999999999999999999999999999983 47999 889988742
Q ss_pred --cccccceeeccChHHHHHHHHHHhcccceee--e-hhhhhcccccccch---hhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 144 --GLNRDLSFKAEDRVENIRRIEKIEMPAVQCC--Q-KEISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~--~-~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
.+++.++|++|++.....++.+...++.... . ........+..... .......+....++.|++||+.++++
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lara 163 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARA 163 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 3456799999996432224444433321100 0 00000001110000 00112234456789999999999998
Q ss_pred hhcc
Q 027590 216 IHMN 219 (221)
Q Consensus 216 ~~~~ 219 (221)
...+
T Consensus 164 l~~~ 167 (261)
T PRK14263 164 IATE 167 (261)
T ss_pred HHcC
Confidence 7654
No 209
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2e-18 Score=148.18 Aligned_cols=142 Identities=17% Similarity=0.096 Sum_probs=95.5
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc------
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH------ 143 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~------ 143 (221)
++++.|+++.|+..++++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|.++..
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV--TFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE--EECCEEccccccChH
Confidence 5788899999988889999999999999999999999999999999999863 57999 889987731
Q ss_pred cccccceeeccChHHHHHHHHHHhcccceee--e-hhhhhcccccccch---hhHHHHHHHHHHHhhhcchhHHHhhhhh
Q 027590 144 GLNRDLSFKAEDRVENIRRIEKIEMPAVQCC--Q-KEISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLLGLMIH 217 (221)
Q Consensus 144 ~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~--~-~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (221)
..++.++|++|++.....++.+...++.... . .............. .......+...++|.|++||+.++++..
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~ 167 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA 167 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 3456799999986422224444433321100 0 00000000000000 0011233445678999999999999876
Q ss_pred cc
Q 027590 218 MN 219 (221)
Q Consensus 218 ~~ 219 (221)
.+
T Consensus 168 ~~ 169 (264)
T PRK14243 168 VQ 169 (264)
T ss_pred cC
Confidence 54
No 210
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.8e-18 Score=147.06 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=95.2
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc-----
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH----- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~----- 143 (221)
.++++.|+++.|+...+++++||++++||+++|+|+||||||||+++|+|+++ ++|+| .++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~~~~~~~~~ 81 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNV--SLRGQNIYAPNEDV 81 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEE--EEcCEEcccccccH
Confidence 35788999999988889999999999999999999999999999999999863 37999 889988742
Q ss_pred -cccccceeeccChHHHHHHHHHHhcccce----eeehh-hhhcccccccch---hhHHHHHHHHHHHhhhcchhHHHhh
Q 027590 144 -GLNRDLSFKAEDRVENIRRIEKIEMPAVQ----CCQKE-ISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~~~~~v~~~~~~g~~----~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
..++.++|++|++.....++.+...++.. ..... ............ ...+..++...++|.|+++|+.+++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 23567999999863211233333222100 00000 000000000000 0012234456778999999999999
Q ss_pred hhhccC
Q 027590 215 MIHMNH 220 (221)
Q Consensus 215 ~~~~~~ 220 (221)
+...++
T Consensus 162 al~~~p 167 (252)
T PRK14255 162 VLAVKP 167 (252)
T ss_pred HHhcCC
Confidence 876653
No 211
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.74 E-value=6.3e-18 Score=159.58 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=101.7
Q ss_pred cceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
+.++.+|++++|++ .++++++||++++|++++|+||||||||||+++|+|++ |++|+| .+||.++.+ .+++
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I--~i~g~~i~~~~~~~~r~ 414 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI--LLNGQPIADYSEAALRQ 414 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEEhhhCCHHHHHh
Confidence 35889999999954 46999999999999999999999999999999999999 688999 899998875 5678
Q ss_pred cceeeccChHHHHHHHHHHhcccceeee--hhhhhcc-----cccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 148 DLSFKAEDRVENIRRIEKIEMPAVQCCQ--KEISLRC-----SWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~g~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.|+|++|++.-.-.++.+...++.-... ....... .+..........+.+.-..+|+|+|||+.++++.-.+
T Consensus 415 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 415 AISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred heeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 8999999986544577776666431100 0000000 0000000011112223456899999999999987654
No 212
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.3e-18 Score=149.88 Aligned_cols=141 Identities=17% Similarity=0.190 Sum_probs=94.4
Q ss_pred ceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccccc-ccceee
Q 027590 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN-RDLSFK 152 (221)
Q Consensus 76 ~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~-~~ig~v 152 (221)
.+++.|+++.|+ ...+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++..... +.++|+
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI--SILGQPTRQALQKNLVAYV 83 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEhHHhhccceEEEe
Confidence 477889999995 578999999999999999999999999999999999998 688999 899988754333 469999
Q ss_pred ccChHHH--H-HHHHHHhccccee------e--ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 153 AEDRVEN--I-RRIEKIEMPAVQC------C--QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 153 ~q~~~~~--~-~~v~~~~~~g~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+|++... . ..+.+...++... . .........+..... .....++....+|.|++||+.++++...+
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LSgG~~qrv~laraL~~~ 160 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVD-MVEFRHRQIGELSGGQKKRVFLARAIAQQ 160 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcC-ChhHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9986421 1 1233332221110 0 000000000100111 11223445567889999999999987654
No 213
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.74 E-value=2e-18 Score=143.42 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=93.4
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeecc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKAE 154 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~q 154 (221)
+++|+++.|+. .+.++||++++|++++|+||||||||||+++|+|++ |++|++ .++|.++.. ..++.++|++|
T Consensus 2 ~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 2 ALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI--KVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred eEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEEcccCChhccceEEEec
Confidence 56788888863 567999999999999999999999999999999999 588999 899988753 34567999999
Q ss_pred ChHHHHH-HHHHHhcccceee---e-hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 155 DRVENIR-RIEKIEMPAVQCC---Q-KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 155 ~~~~~~~-~v~~~~~~g~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++..... ++.+....+.... . ........+...... .+..++....+|.|++||+.++++...++
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrl~laral~~~p 147 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGI-ADYLDRLPEQLSGGQRQRVALARCLVRPN 147 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCc-HHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9643222 4444332211000 0 000000111111111 23345556789999999999999876543
No 214
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.74 E-value=3.8e-18 Score=147.58 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=95.2
Q ss_pred eeeeeeeEec--CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc----cccccce
Q 027590 77 AKSTNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 77 ~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
++++|++++| +...+++++||+|++||+++|+|+||||||||+++|+|+++++|+| +++|.++.. .+++.++
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I--~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI--QIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEE--EECCEEhhhCCHHHHhhhEE
Confidence 5678899888 4567999999999999999999999999999999999999888999 899988753 4567899
Q ss_pred eeccChHHHHHHHHHHhcc-cceeeehhhhhcccccccchhhHHHHHHHHHH-----------HhhhcchhHHHhhhhhc
Q 027590 151 FKAEDRVENIRRIEKIEMP-AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTS-----------LHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 151 ~v~q~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~~~~~ 218 (221)
|++|++...-.++.+.... +......+.. ..... ......++.... ++.|++|++.++++...
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~----~l~~~-gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~ 155 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWK----VAEEV-GLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS 155 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHH----HHHHc-CCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999985433355554421 1110000000 00000 111222222332 89999999999998765
Q ss_pred c
Q 027590 219 N 219 (221)
Q Consensus 219 ~ 219 (221)
+
T Consensus 156 ~ 156 (275)
T cd03289 156 K 156 (275)
T ss_pred C
Confidence 4
No 215
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2e-18 Score=148.98 Aligned_cols=143 Identities=17% Similarity=0.104 Sum_probs=95.8
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc------
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH------ 143 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~------ 143 (221)
++++.|+++.|+...+++++||++++||+++|+|+||||||||+++|+|+++ .+|++ .++|+++..
T Consensus 20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i--~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 20 VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL--LYRDRNIYDSQINSV 97 (274)
T ss_pred eEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE--EECCEecccccchhH
Confidence 6889999999988889999999999999999999999999999999999973 37999 899988742
Q ss_pred cccccceeeccChHHHHHHHHHHhcccceee--e-hhhhhccccc---ccchhhHHHHHHHHHHHhhhcchhHHHhhhhh
Q 027590 144 GLNRDLSFKAEDRVENIRRIEKIEMPAVQCC--Q-KEISLRCSWM---CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIH 217 (221)
Q Consensus 144 ~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~--~-~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (221)
.+++.++|++|++.....++.+...++.... . .......... .......+...+....++.|++||+.++++..
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 3456899999986421113333332211000 0 0000000000 00000112234455678999999999999876
Q ss_pred ccC
Q 027590 218 MNH 220 (221)
Q Consensus 218 ~~~ 220 (221)
.+.
T Consensus 178 ~~p 180 (274)
T PRK14265 178 MKP 180 (274)
T ss_pred hCC
Confidence 543
No 216
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.74 E-value=3e-18 Score=137.53 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=82.8
Q ss_pred eeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccC
Q 027590 78 KSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (221)
Q Consensus 78 ~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~ 155 (221)
+++++++.|+ ...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .+++. +.++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~~~-------~~i~~~~q~ 72 (166)
T cd03223 2 ELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI--GMPEG-------EDLLFLPQR 72 (166)
T ss_pred EEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCC-------ceEEEECCC
Confidence 4678888885 457999999999999999999999999999999999998 588999 77763 568999998
Q ss_pred hHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 156 RVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 156 ~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+...-.++.+....+ ...+++.|+++|+.++++...++
T Consensus 73 ~~~~~~tv~~nl~~~---------------------------~~~~LS~G~~~rv~laral~~~p 110 (166)
T cd03223 73 PYLPLGTLREQLIYP---------------------------WDDVLSGGEQQRLAFARLLLHKP 110 (166)
T ss_pred CccccccHHHHhhcc---------------------------CCCCCCHHHHHHHHHHHHHHcCC
Confidence 742111333322110 23678999999999998776543
No 217
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.74 E-value=2.1e-18 Score=142.66 Aligned_cols=131 Identities=21% Similarity=0.164 Sum_probs=93.8
Q ss_pred ceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 76 ~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
.+++++++++|+. ..+++++||++++|++++|+|+||||||||+++|+|++ |.+|++ .++|.++.. ..++.
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI--EIDGIDISTIPLEDLRSS 83 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE--EECCEEhHHCCHHHHHhh
Confidence 4678888888864 47999999999999999999999999999999999998 588999 899988743 34567
Q ss_pred ceeeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++|++...-.++.+....... . . .. .. ....+ ..+....++.|+++|+.++++...+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~-~-~~---~~---~~~l~--~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-Y-S-DE---EI---YGALR--VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-C-C-HH---HH---HHHhh--ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 999999974322245444332110 0 0 00 00 00000 2334567888999999999987654
No 218
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.8e-18 Score=147.00 Aligned_cols=143 Identities=12% Similarity=0.103 Sum_probs=95.0
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc---cc---cCceEEEEECCccccc------
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA---LH---WRGKLTYILDGDNCRH------ 143 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~---l~---~~G~i~~~l~g~~~~~------ 143 (221)
+++++|+++.|+...+++++||++.+|++++|+|+||||||||+++|+|+ ++ ++|++ .++|.++..
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i--~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI--RIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEE--EECCEecccccccHH
Confidence 56788999999888899999999999999999999999999999999997 34 37999 899988753
Q ss_pred cccccceeeccChHHHHHHHHHHhcccce----eeeh-hhhhcccccccchh---hHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 144 GLNRDLSFKAEDRVENIRRIEKIEMPAVQ----CCQK-EISLRCSWMCHFKC---VRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 144 ~~~~~ig~v~q~~~~~~~~v~~~~~~g~~----~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
..++.++|++|++.....++.+....+.. .... .......+...... ......+....+|.|++||+.++++
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 23567999999863221233333322110 0000 00000000000000 0122345567899999999999998
Q ss_pred hhccC
Q 027590 216 IHMNH 220 (221)
Q Consensus 216 ~~~~~ 220 (221)
...+.
T Consensus 161 l~~~p 165 (250)
T PRK14245 161 MAVSP 165 (250)
T ss_pred HhcCC
Confidence 76543
No 219
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=2.2e-18 Score=142.41 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=92.2
Q ss_pred ceeeeeeeEecC----CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc----cCceEEEEECCccccc---c
Q 027590 76 VAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRH---G 144 (221)
Q Consensus 76 ~~~~~~~~~~~~----~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~----~~G~i~~~l~g~~~~~---~ 144 (221)
.+.++|+++.|. +..+++++||++++|++++|+|+||||||||+++|+|+++ ++|++ .++|.++.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i--~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI--HYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEE--EECCEECccchhh
Confidence 356778888884 5579999999999999999999999999999999999974 57999 889988753 3
Q ss_pred ccccceeeccChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 145 LNRDLSFKAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.++.++|++|++..... ++.+....... . ..++....++.|++||+.++++...+
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~--------------~------~~~~~~~~LS~Ge~qrl~laral~~~ 136 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALR--------------C------KGNEFVRGISGGERKRVSIAEALVSR 136 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhh--------------h------ccccchhhCCHHHHHHHHHHHHHhhC
Confidence 45679999998643322 44443322110 0 03345678999999999999877654
No 220
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.4e-18 Score=157.34 Aligned_cols=140 Identities=18% Similarity=0.147 Sum_probs=91.9
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc--------cccc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG--------LNRD 148 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~--------~~~~ 148 (221)
...++...|+...+++++||++++||+++|+||||||||||+|+|+|++ |++|+| +++|.++... .++.
T Consensus 30 ~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I--~i~G~~i~~~~~~~l~~~~~~~ 107 (400)
T PRK10070 30 SKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQV--LIDGVDIAKISDAELREVRRKK 107 (400)
T ss_pred cHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEE--EECCEECCcCCHHHHHHHHhCC
Confidence 3334444556667899999999999999999999999999999999999 688999 8999987531 1357
Q ss_pred ceeeccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 149 LSFKAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+||++|++..... ++.+...++. ............+...... ....++...++|.|++||+.++++...+.
T Consensus 108 igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL-~~~~~~~~~~LSgGq~QRv~LArAL~~~P 183 (400)
T PRK10070 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGL-ENYAHSYPDELSGGMRQRVGLARALAINP 183 (400)
T ss_pred EEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-ChhhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999998632211 3333332211 0000000000111111111 12345566789999999999999876653
No 221
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.74 E-value=5.1e-18 Score=139.92 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=86.1
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc--c-ccCceEEEEECCccccc----c-ccccc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--L-HWRGKLTYILDGDNCRH----G-LNRDL 149 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~--l-~~~G~i~~~l~g~~~~~----~-~~~~i 149 (221)
.++|+++.|+...+++++||++++|++++|+|+||||||||+++|+|+ + |++|++ .++|+++.. . .+..+
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i--~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI--LFKGEDITDLPPEERARLGI 79 (200)
T ss_pred eEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEE--EECCEECCcCCHHHHhhCcE
Confidence 467888888877899999999999999999999999999999999999 4 578999 899988754 1 23459
Q ss_pred eeeccChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 150 SFKAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 150 g~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+|++|++..... ++.+. .+.....++.|++||+.++++...+
T Consensus 80 ~~v~q~~~~~~~~~~~~~----------------------------l~~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 80 FLAFQYPPEIPGVKNADF----------------------------LRYVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred EEeecChhhccCccHHHH----------------------------HhhccccCCHHHHHHHHHHHHHhcC
Confidence 999998642110 11111 0111257999999999999987654
No 222
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.74 E-value=5.8e-18 Score=144.49 Aligned_cols=132 Identities=13% Similarity=0.093 Sum_probs=91.7
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeec
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA 153 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~ 153 (221)
+++++.|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .+++. ..++|++
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i--~~~~~-------~~i~~v~ 73 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI--KRNGK-------LRIGYVP 73 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCc-------cCEEEec
Confidence 3678899999998888999999999999999999999999999999999998 688999 77762 3589999
Q ss_pred cChHHHH---HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 154 EDRVENI---RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 154 q~~~~~~---~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++.... .++.+......-. . ......+..... ..+..++....+|.|+++|+.++++...+
T Consensus 74 q~~~~~~~l~~~~~~~~~~~~~~-~--~~~~~~~l~~~g-l~~~~~~~~~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 74 QKLYLDTTLPLTVNRFLRLRPGT-K--KEDILPALKRVQ-AGHLIDAPMQKLSGGETQRVLLARALLNR 138 (251)
T ss_pred cccccccccChhHHHHHhccccc-c--HHHHHHHHHHcC-ChHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9863211 1233322111000 0 000001111111 12334556788999999999999987654
No 223
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.7e-18 Score=147.12 Aligned_cols=143 Identities=14% Similarity=0.150 Sum_probs=95.5
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-cc-----CceEEEEECCccccc------
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW-----RGKLTYILDGDNCRH------ 143 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~-----~G~i~~~l~g~~~~~------ 143 (221)
++++.|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ |+ +|++ .++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i--~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI--LLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeE--EECCEEcccCccCHH
Confidence 577889999998888999999999999999999999999999999999998 43 6999 889988742
Q ss_pred cccccceeeccChHHHHH-HHHHHhcccce-----eeehhhhhcccccccc---hhhHHHHHHHHHHHhhhcchhHHHhh
Q 027590 144 GLNRDLSFKAEDRVENIR-RIEKIEMPAVQ-----CCQKEISLRCSWMCHF---KCVRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 144 ~~~~~ig~v~q~~~~~~~-~v~~~~~~g~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
.+++.++|++|++..... ++.+....+.. ......+....+.... .......+.....+|.|+++|+.+++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIAR 161 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHH
Confidence 235679999998643221 33333322110 0000000000000000 00012234456789999999999999
Q ss_pred hhhccC
Q 027590 215 MIHMNH 220 (221)
Q Consensus 215 ~~~~~~ 220 (221)
+...++
T Consensus 162 al~~~p 167 (252)
T PRK14272 162 ALAVEP 167 (252)
T ss_pred HHhcCC
Confidence 876543
No 224
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.3e-18 Score=145.86 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=102.3
Q ss_pred ccccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccccc-----cc
Q 027590 72 QNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH-----GL 145 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~-----~~ 145 (221)
..+.++..+|++..|+.+++|+++|++|++||-++|+||||||||||++++++..| .+|.+ .+.|+...+ .+
T Consensus 27 ~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~--~~~G~~~G~~~~~~el 104 (257)
T COG1119 27 INEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV--TLLGRRFGKGETIFEL 104 (257)
T ss_pred CCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCce--eeeeeeccCCcchHHH
Confidence 34567899999999999999999999999999999999999999999999999994 67887 566766543 67
Q ss_pred cccceeeccChHHHHH---HHHHHhcccceeeehhhhhccccc-ccchhhHH-------------HHHHHHHHHhhhcch
Q 027590 146 NRDLSFKAEDRVENIR---RIEKIEMPAVQCCQKEISLRCSWM-CHFKCVRQ-------------GTQRAFTSLHEKGRS 208 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~~---~v~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~l~~~~~~ 208 (221)
++.||||.-...+.++ ++.+++-.|.....+. |. ...+.+.+ .+++.+..+|.|+++
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~------y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI------YQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccc------cccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHH
Confidence 8999999755444433 3555544444333333 22 22333333 445555667779999
Q ss_pred hHHHhhhhhcc
Q 027590 209 RVLLGLMIHMN 219 (221)
Q Consensus 209 ~~~~~~~~~~~ 219 (221)
+++++++.--+
T Consensus 179 rvLiaRALv~~ 189 (257)
T COG1119 179 RVLIARALVKD 189 (257)
T ss_pred HHHHHHHHhcC
Confidence 99999976543
No 225
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=2.1e-18 Score=145.14 Aligned_cols=140 Identities=15% Similarity=0.073 Sum_probs=95.7
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeecc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKAE 154 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~q 154 (221)
.++++++.|+..++++++||++++|++++|+|+||||||||+++|+|++ |..|++ +++|+++.. ..++.++|++|
T Consensus 2 ~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i--~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI--LLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred EEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEEcCcCChhhcceEEEec
Confidence 4678888898888999999999999999999999999999999999999 578998 889988754 23467999999
Q ss_pred ChHHHHH-HHHHHhccccee--eeh--hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 155 DRVENIR-RIEKIEMPAVQC--CQK--EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 155 ~~~~~~~-~v~~~~~~g~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++..... ++.+....+... ... .......+...... .+..++.+..++.|+++|+.++++...++
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~lS~G~~qrl~laral~~~p 149 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL-EGYANRKPSQLSGGQQQRVAIARALVNEP 149 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 8643221 333333221100 000 00000001111111 23345556789999999999999876654
No 226
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3.2e-18 Score=147.47 Aligned_cols=144 Identities=17% Similarity=0.107 Sum_probs=97.5
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc-----
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH----- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~----- 143 (221)
++++++|+++.|+...+++++||++++|++++|+|+||||||||+++|+|+++ .+|++ .++|.++..
T Consensus 24 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i--~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI--RLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE--EECCEECcccccCH
Confidence 46788999999987789999999999999999999999999999999999974 58999 889988752
Q ss_pred -cccccceeeccChHHHHHHHHHHhcccce-e-e-e-h-hhhhcccccccch---hhHHHHHHHHHHHhhhcchhHHHhh
Q 027590 144 -GLNRDLSFKAEDRVENIRRIEKIEMPAVQ-C-C-Q-K-EISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~~~~~v~~~~~~g~~-~-~-~-~-~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
.+++.++|++|++.....++.+...++.. . . . . .......+..... .......+....++.|++||+.+++
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 181 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIAR 181 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHH
Confidence 24568999999863221234333322110 0 0 0 0 0000000000000 0012334556789999999999999
Q ss_pred hhhccC
Q 027590 215 MIHMNH 220 (221)
Q Consensus 215 ~~~~~~ 220 (221)
+...+.
T Consensus 182 al~~~p 187 (272)
T PRK14236 182 AIAIEP 187 (272)
T ss_pred HHHCCC
Confidence 876543
No 227
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.4e-18 Score=147.13 Aligned_cols=143 Identities=16% Similarity=0.090 Sum_probs=95.5
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc-----
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH----- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~----- 143 (221)
..++++|+++.|+...+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|.++..
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i--~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVV--DFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEE--EECCEeccccccch
Confidence 36788999999988889999999999999999999999999999999999984 27999 889988742
Q ss_pred -cccccceeeccChHHHHHHHHHHhcccce-----eeehhhhhcccccccch---hhHHHHHHHHHHHhhhcchhHHHhh
Q 027590 144 -GLNRDLSFKAEDRVENIRRIEKIEMPAVQ-----CCQKEISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~~~~~v~~~~~~g~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
.++..++|++|++.....++.+...++.. .-............... ......++...+++.|+++|+.+++
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 163 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIAR 163 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 24567999999864221233333322110 00000000000000000 0012233445688999999999999
Q ss_pred hhhcc
Q 027590 215 MIHMN 219 (221)
Q Consensus 215 ~~~~~ 219 (221)
+...+
T Consensus 164 al~~~ 168 (259)
T PRK14260 164 ALAIK 168 (259)
T ss_pred HHhcC
Confidence 87654
No 228
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=3.8e-18 Score=143.53 Aligned_cols=138 Identities=21% Similarity=0.169 Sum_probs=93.8
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeec
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKA 153 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~ 153 (221)
+++.|++++|+... .++||++.+|++++|+|+||||||||+++|+|++ |.+|++ .++|+++.. ...+.++|++
T Consensus 2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i--~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL--TLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCeecCcCChhhccEEEEe
Confidence 56788999997543 3899999999999999999999999999999998 588999 899988753 2345799999
Q ss_pred cChHHHHH-HHHHHhcccceee---e-hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 154 EDRVENIR-RIEKIEMPAVQCC---Q-KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++..... ++.+....+.... . ............... .+..++....+|.|++||+.++++...+
T Consensus 78 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~laral~~~ 147 (232)
T PRK10771 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGI-EDLLARLPGQLSGGQRQRVALARCLVRE 147 (232)
T ss_pred cccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCc-HHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 98643222 4555443321110 0 000000111111111 2345556678899999999999877654
No 229
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.74 E-value=3.8e-18 Score=142.22 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=94.3
Q ss_pred eeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccc
Q 027590 77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDL 149 (221)
Q Consensus 77 ~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~i 149 (221)
++++|+++.|+. .++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. .+++.+
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI--LIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE--EECCEEhHhCCHHHHhhhE
Confidence 467788888853 47999999999999999999999999999999999998 688999 889988753 346789
Q ss_pred eeeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHH-----------HHHHHHHhhhcchhHHHhhhhhc
Q 027590 150 SFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGT-----------QRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 150 g~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
+|++|++...-.++.+........ .... ......... ..+.. .+....++.|++||+.++++...
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~--~~~~-~~~~~~~~~-l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~ 156 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEY--SDEE-LWQALERVG-LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR 156 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCC--CHHH-HHHHHHHhC-cHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc
Confidence 999999753222455543321100 0000 000000000 01111 23456789999999999998765
Q ss_pred cC
Q 027590 219 NH 220 (221)
Q Consensus 219 ~~ 220 (221)
+.
T Consensus 157 ~p 158 (221)
T cd03244 157 KS 158 (221)
T ss_pred CC
Confidence 43
No 230
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2e-18 Score=160.47 Aligned_cols=143 Identities=17% Similarity=0.062 Sum_probs=98.4
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----ccccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~ 148 (221)
+++++.|+++.|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .++|+++.. .+++.
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I--~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI--LIDGQEMRFASTTAALAAG 80 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEE--EECCEECCCCCHHHHHhCC
Confidence 3678889999998888999999999999999999999999999999999998 688999 889988742 23567
Q ss_pred ceeeccChHHHHH-HHHHHhcccceee-eh------hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 149 LSFKAEDRVENIR-RIEKIEMPAVQCC-QK------EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~g~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++|++..... ++.+....+.... .. .......+....... ...++....+|+|++||+.++++...+.
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p 159 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNA 159 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCC
Confidence 9999998643221 4444443321100 00 000000010000110 1123456789999999999999876553
No 231
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.74 E-value=4.9e-18 Score=138.00 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=65.6
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~i 149 (221)
+++++|++++| +++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.+
T Consensus 4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI--TLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEECCccCHHHHHhCCe
Confidence 56778888777 899999999999999999999999999999999998 588999 899988753 235679
Q ss_pred eeeccCh
Q 027590 150 SFKAEDR 156 (221)
Q Consensus 150 g~v~q~~ 156 (221)
+|++|++
T Consensus 78 ~~~~q~~ 84 (182)
T cd03215 78 AYVPEDR 84 (182)
T ss_pred EEecCCc
Confidence 9999985
No 232
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1e-18 Score=150.48 Aligned_cols=139 Identities=17% Similarity=0.141 Sum_probs=94.2
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----c----cccc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----G----LNRD 148 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~----~~~~ 148 (221)
...++++.|+...+++++||++.+|++++|+||||||||||+++|+|++ |++|++ .++|.++.. . ..+.
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i--~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV--LIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE--EECCEEccccChhhhhhhhcCc
Confidence 4557778888889999999999999999999999999999999999999 578999 899988753 1 1357
Q ss_pred ceeeccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++|++..... ++.+...++. ............+..... ..+...+...++|.|++||+.++++...+
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVG-LEGWEHKYPDELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998643221 3444333211 000000000000111111 12334555678899999999999987654
No 233
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.73 E-value=4.9e-18 Score=141.92 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=89.8
Q ss_pred eeeeeeeEecCC-------ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEEC--Cc--cccc-
Q 027590 77 AKSTNILWHKNS-------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD--GD--NCRH- 143 (221)
Q Consensus 77 ~~~~~~~~~~~~-------~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~--g~--~~~~- 143 (221)
+++.|+++.|+. ..+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++ |. ++..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI--LVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE--EEecCCCccchhhc
Confidence 567788888852 46999999999999999999999999999999999998 678999 777 42 4321
Q ss_pred ------c-ccccceeeccChHHHHH-HHHHHhcc-----cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhH
Q 027590 144 ------G-LNRDLSFKAEDRVENIR-RIEKIEMP-----AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRV 210 (221)
Q Consensus 144 ------~-~~~~ig~v~q~~~~~~~-~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (221)
. .++.++|++|++..... ++.+.... +. ...........+...........+....++|.|++||+
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGV-PREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 1 23569999998642211 22222211 10 00000000011111111111122445778999999999
Q ss_pred HHhhhhhcc
Q 027590 211 LLGLMIHMN 219 (221)
Q Consensus 211 ~~~~~~~~~ 219 (221)
.++++...+
T Consensus 159 ~laral~~~ 167 (224)
T TIGR02324 159 NIARGFIAD 167 (224)
T ss_pred HHHHHHhcC
Confidence 999987654
No 234
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.7e-18 Score=145.04 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=95.7
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc---c---cCceEEEEECCccccc------c
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---H---WRGKLTYILDGDNCRH------G 144 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l---~---~~G~i~~~l~g~~~~~------~ 144 (221)
++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ | ++|++ .++|.++.. .
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v--~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHI--YLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEE--EECCEEcccccccHHH
Confidence 56788998898778999999999999999999999999999999999985 2 57999 899988743 3
Q ss_pred ccccceeeccChHHHHHHHHHHhcccceee----eh-hhhhcccccccch---hhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 145 LNRDLSFKAEDRVENIRRIEKIEMPAVQCC----QK-EISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~----~~-~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
+++.++|++|++.....++.+....+.... .. .......+..... ......++....++.|+++|+.++++.
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 456799999986432234444433221000 00 0000000000000 001223445677899999999999987
Q ss_pred hccC
Q 027590 217 HMNH 220 (221)
Q Consensus 217 ~~~~ 220 (221)
..++
T Consensus 162 ~~~p 165 (250)
T PRK14266 162 AVSP 165 (250)
T ss_pred HcCC
Confidence 7653
No 235
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.73 E-value=3.5e-18 Score=140.30 Aligned_cols=115 Identities=22% Similarity=0.239 Sum_probs=88.5
Q ss_pred eeeeeeeEecCC------ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc--c-cCceEEEEECCccccc-ccc
Q 027590 77 AKSTNILWHKNS------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--H-WRGKLTYILDGDNCRH-GLN 146 (221)
Q Consensus 77 ~~~~~~~~~~~~------~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l--~-~~G~i~~~l~g~~~~~-~~~ 146 (221)
++++++++.|+. ..+++++||++++|++++|+||||||||||+++|+|++ + .+|++ .++|+++.. ..+
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i--~~~g~~~~~~~~~ 81 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV--LINGRPLDKRSFR 81 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE--EECCEeCchHhhh
Confidence 567888888864 67999999999999999999999999999999999998 6 67999 889998764 345
Q ss_pred ccceeeccChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 147 RDLSFKAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 147 ~~ig~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+.++|++|++..... ++.+....+ ..+..+|.|+++|+.++++...+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~~--------------------------~~~~~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMFA--------------------------AKLRGLSGGERKRVSIALELVSN 129 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHHH--------------------------HHhccCCHHHHHHHHHHHHHHcC
Confidence 679999998532111 233221110 00117999999999999987654
No 236
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.73 E-value=2.2e-18 Score=161.11 Aligned_cols=142 Identities=14% Similarity=0.122 Sum_probs=97.7
Q ss_pred ceeeeeeeEecC-----------CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc-
Q 027590 76 VAKSTNILWHKN-----------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH- 143 (221)
Q Consensus 76 ~~~~~~~~~~~~-----------~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~- 143 (221)
+++++|+++.|+ ...+++++||++++|++++|+||||||||||+|+|+|++|++|+| +++|.++..
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i--~~~g~~i~~~ 352 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEI--WFDGQPLHNL 352 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEE--EECCEEcccc
Confidence 577788888784 357999999999999999999999999999999999999888999 889988743
Q ss_pred ------cccccceeeccChHH-HH--HHHHHHhcccce------eeehhhhhcccccccchhhHHHHHHHHHHHhhhcch
Q 027590 144 ------GLNRDLSFKAEDRVE-NI--RRIEKIEMPAVQ------CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRS 208 (221)
Q Consensus 144 ------~~~~~ig~v~q~~~~-~~--~~v~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (221)
.+++.++|++|++.. .+ .++.+....+.. ...........+........+..++....+|+|++|
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 432 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQ 432 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHH
Confidence 124679999999732 11 134444333210 000000111111111222222345667889999999
Q ss_pred hHHHhhhhhcc
Q 027590 209 RVLLGLMIHMN 219 (221)
Q Consensus 209 ~~~~~~~~~~~ 219 (221)
|+.++++...+
T Consensus 433 rv~la~al~~~ 443 (529)
T PRK15134 433 RIAIARALILK 443 (529)
T ss_pred HHHHHHHHhCC
Confidence 99999987654
No 237
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.73 E-value=5.8e-18 Score=160.14 Aligned_cols=140 Identities=15% Similarity=0.049 Sum_probs=98.7
Q ss_pred ceeeeeeeEecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccc
Q 027590 76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~i 149 (221)
-++.++++++|+. .++++++||++++||.++|+|+||||||||+++|+|++ |++|+| .+||.++.+ .+++.|
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I--~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI--RLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE--EECCEEhhhCCHHHHHhhe
Confidence 4778899999953 57999999999999999999999999999999999999 688999 899998864 578899
Q ss_pred eeeccChHHHHHHHHHHhcccceeeehhhhhccccc---------ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 150 SFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWM---------CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 150 g~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+|++|++.-.-.++.+...++. .... .+...... ...........+.-..+|+|+|||..++++...+
T Consensus 418 ~~v~Q~~~lF~~Ti~~NI~~~~-~~~d-~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~ 494 (592)
T PRK10790 418 AMVQQDPVVLADTFLANVTLGR-DISE-EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQT 494 (592)
T ss_pred EEEccCCccccchHHHHHHhCC-CCCH-HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999998544446666555543 1100 00000000 0000001111112235889999999999986554
No 238
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.7e-18 Score=148.93 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=71.6
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~---- 143 (221)
++++.+.|+++.|+...+++++||++.+|++++|+|+||||||||+++|+|+++ .+|++ .++|.++..
T Consensus 43 ~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I--~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSV--ELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE--EECCEEccccccc
Confidence 446889999999988889999999999999999999999999999999999973 58999 899988742
Q ss_pred --cccccceeeccChH
Q 027590 144 --GLNRDLSFKAEDRV 157 (221)
Q Consensus 144 --~~~~~ig~v~q~~~ 157 (221)
.+++.++|++|++.
T Consensus 121 ~~~~~~~i~~v~q~~~ 136 (305)
T PRK14264 121 LVELRKRVGMVFQSPN 136 (305)
T ss_pred HHHHhhceEEEccCCc
Confidence 23567999999864
No 239
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.73 E-value=3.3e-18 Score=147.17 Aligned_cols=143 Identities=16% Similarity=0.179 Sum_probs=94.6
Q ss_pred ceeeeeeeEecC---------CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--
Q 027590 76 VAKSTNILWHKN---------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-- 143 (221)
Q Consensus 76 ~~~~~~~~~~~~---------~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-- 143 (221)
++++.|+++.|+ +..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i--~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV--SWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEeccccC
Confidence 467888888886 468999999999999999999999999999999999998 688999 889987743
Q ss_pred -----cccccceeeccChHHHH---HHHHHHhcccc-----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhH
Q 027590 144 -----GLNRDLSFKAEDRVENI---RRIEKIEMPAV-----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRV 210 (221)
Q Consensus 144 -----~~~~~ig~v~q~~~~~~---~~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (221)
.+++.++|++|++...+ ..+.+...... ..-.........+...........++....++.|++||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl 160 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence 24567999999863211 12222211100 000000000001111111111223445667899999999
Q ss_pred HHhhhhhccC
Q 027590 211 LLGLMIHMNH 220 (221)
Q Consensus 211 ~~~~~~~~~~ 220 (221)
.++++...+.
T Consensus 161 ~laral~~~p 170 (268)
T PRK10419 161 CLARALAVEP 170 (268)
T ss_pred HHHHHHhcCC
Confidence 9999876553
No 240
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=9.3e-18 Score=142.78 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=78.3
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccChHHHHHHHHHHh
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKIE 167 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~~~ 167 (221)
+.++++|||++.+||+++|+|+||||||||.|+|.|++ |++|+| +|+|+++.... ..+..+++.++.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i--~f~g~~i~~~~----------~~~~~~~v~elL 93 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI--LFEGKDITKLS----------KEERRERVLELL 93 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceE--EEcCcchhhcc----------hhHHHHHHHHHH
Confidence 58999999999999999999999999999999999999 699999 99999976422 223334455544
Q ss_pred cc-cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 168 MP-AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 168 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
.. |. ..+.+.+.--++++|++||+.++++...+.
T Consensus 94 ~~Vgl-------------------~~~~~~ryPhelSGGQrQRi~IARALal~P 128 (268)
T COG4608 94 EKVGL-------------------PEEFLYRYPHELSGGQRQRIGIARALALNP 128 (268)
T ss_pred HHhCC-------------------CHHHhhcCCcccCchhhhhHHHHHHHhhCC
Confidence 33 31 123344445689999999999999887653
No 241
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.73 E-value=1e-17 Score=143.20 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=97.3
Q ss_pred eccccceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----
Q 027590 71 CQNSTVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---- 143 (221)
+...+.+++++++++|+. ..+++++||++++|++++|+|+||||||||+++|+|++ |.+|++ +++|.++..
T Consensus 14 ~~~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i--~i~g~~i~~~~~~ 91 (257)
T cd03288 14 VGLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI--VIDGIDISKLPLH 91 (257)
T ss_pred ccCCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeE--EECCEEhhhCCHH
Confidence 344567889999999975 57999999999999999999999999999999999998 588999 899988754
Q ss_pred cccccceeeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHH-----------HHHHHHHHhhhcchhHHH
Q 027590 144 GLNRDLSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQG-----------TQRAFTSLHEKGRSRVLL 212 (221)
Q Consensus 144 ~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~ 212 (221)
.+++.++|++|++...-.++.+........ . .......... ....+. .......++.|++||+.+
T Consensus 92 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~-~--~~~~~~~l~~-~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 92 TLRSRLSIILQDPILFSGSIRFNLDPECKC-T--DDRLWEALEI-AQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCL 167 (257)
T ss_pred HHhhhEEEECCCCcccccHHHHhcCcCCCC-C--HHHHHHHHHH-hCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHH
Confidence 346779999998743223444433221100 0 0000000000 000011 111234788999999999
Q ss_pred hhhhhcc
Q 027590 213 GLMIHMN 219 (221)
Q Consensus 213 ~~~~~~~ 219 (221)
+++...+
T Consensus 168 aral~~~ 174 (257)
T cd03288 168 ARAFVRK 174 (257)
T ss_pred HHHHhcC
Confidence 9987654
No 242
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.73 E-value=2.4e-18 Score=160.67 Aligned_cols=142 Identities=12% Similarity=0.026 Sum_probs=100.6
Q ss_pred ceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 76 ~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
-++.+|++++|++ .++++++||++++|+.++|+|+||||||||+++|+|++ |++|+| .+||.++.+ .+++.
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I--~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI--AVNGVPLADADADSWRDQ 397 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEehhhCCHHHHHhh
Confidence 4788999999965 46999999999999999999999999999999999999 688999 899998864 56788
Q ss_pred ceeeccChHHHHHHHHHHhcccceeee--hhhhhcc-----ccc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAVQCCQ--KEISLRC-----SWM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~~~~~--~~~~~~~-----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++|++.-.-.++.+...++.-... ...+... .+. ...........+.-..+++|+|||..++++...+
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 999999975443456666555321100 0000000 000 0001112223333456899999999999987654
No 243
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.5e-18 Score=144.44 Aligned_cols=142 Identities=18% Similarity=0.109 Sum_probs=94.7
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc-----c
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH-----G 144 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~-----~ 144 (221)
.+++.|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ ++|++ .++|.++.. .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v--~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL--TMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE--EECCEEcccccchHH
Confidence 4678899999988889999999999999999999999999999999999984 37998 889987641 3
Q ss_pred ccccceeeccChHHHHHHHHHHhcccceee----ehhh-hhcccccccc---hhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 145 LNRDLSFKAEDRVENIRRIEKIEMPAVQCC----QKEI-SLRCSWMCHF---KCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~----~~~~-~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
.++.++|++|++.....++.+....+.... .... .......... .......++....++.|+++|+.++++.
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 456799999986422123333332211000 0000 0000000000 0001223444567899999999999987
Q ss_pred hcc
Q 027590 217 HMN 219 (221)
Q Consensus 217 ~~~ 219 (221)
..+
T Consensus 161 ~~~ 163 (249)
T PRK14253 161 AME 163 (249)
T ss_pred HcC
Confidence 654
No 244
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=5.6e-18 Score=145.34 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=96.1
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCcccc-----
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCR----- 142 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~----- 142 (221)
.+.++++|+++.|+..++++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i--~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI--ILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEE--EEcCccccccccc
Confidence 446788999999988889999999999999999999999999999999999983 47998 88887653
Q ss_pred ---ccccccceeeccChHHHHHHHHHHhcccce----eeehh-hhhccccc---ccchhhHHHHHHHHHHHhhhcchhHH
Q 027590 143 ---HGLNRDLSFKAEDRVENIRRIEKIEMPAVQ----CCQKE-ISLRCSWM---CHFKCVRQGTQRAFTSLHEKGRSRVL 211 (221)
Q Consensus 143 ---~~~~~~ig~v~q~~~~~~~~v~~~~~~g~~----~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (221)
..+++.++|++|++.....++.+...++.. ..... .+...... .......+...+....++.|+++|+.
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 171 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLC 171 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHH
Confidence 134567999999853221233333322110 00000 00000000 00000112334456778999999999
Q ss_pred HhhhhhccC
Q 027590 212 LGLMIHMNH 220 (221)
Q Consensus 212 ~~~~~~~~~ 220 (221)
++++...+.
T Consensus 172 laral~~~p 180 (265)
T PRK14252 172 IARALATDP 180 (265)
T ss_pred HHHHHHcCC
Confidence 999876553
No 245
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.73 E-value=5.4e-18 Score=139.87 Aligned_cols=132 Identities=16% Similarity=0.110 Sum_probs=87.4
Q ss_pred eeeeeeEecCCc-----cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccccccccee
Q 027590 78 KSTNILWHKNSV-----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (221)
Q Consensus 78 ~~~~~~~~~~~~-----~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~ 151 (221)
++.|+++.|+.. .+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++| .|+|
T Consensus 2 ~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i--~~~g---------~i~~ 70 (204)
T cd03250 2 SVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV--SVPG---------SIAY 70 (204)
T ss_pred EEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE--EEcC---------EEEE
Confidence 467888888653 6999999999999999999999999999999999998 688999 7887 5899
Q ss_pred eccChHHHHHHHHHHhcccceeeehhh-hhcc-----cccccc-hhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDRVENIRRIEKIEMPAVQCCQKEI-SLRC-----SWMCHF-KCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~~~~~~~v~~~~~~g~~~~~~~~-~~~~-----~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++.-.-.++.+....+........ .... .+.... ........+....++.|+++|+.++++...++
T Consensus 71 ~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 71 VSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999975332245554443211000000 0000 000000 00000112224678999999999999877654
No 246
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.73 E-value=4.6e-18 Score=157.52 Aligned_cols=138 Identities=19% Similarity=0.134 Sum_probs=96.1
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccce
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
+++++|+++.|+...+++++||++++|++++|+||||||||||+|+|+|++ |++|++ .++|.++.. ..++.++
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i--~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER--QSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE--EECCcccccCCHHHHHHHhc
Confidence 478899999998778999999999999999999999999999999999998 678999 788876532 2345699
Q ss_pred eeccChHHHH---------HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 151 FKAEDRVENI---------RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 151 ~v~q~~~~~~---------~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++|++.... ..+.+....+. ........+...... .+..++...++|+|++||+.++++...++
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV----KDPARCEQLAQQFGI-TALLDRRFKYLSTGETRKTLLCQALMSEP 154 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch----hHHHHHHHHHHHcCC-HhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999864211 12222221110 000001111111111 23346667899999999999999876553
No 247
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.73 E-value=3.3e-18 Score=158.90 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=95.6
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc---cCceEEEEECCccccc-----cccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKLTYILDGDNCRH-----GLNR 147 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~---~~G~i~~~l~g~~~~~-----~~~~ 147 (221)
+++++|+++.|+..++++++||++++|++++|+||||||||||+++|+|+++ ++|+| .++|+++.. ..++
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i--~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI--YWSGSPLKASNIRDTERA 78 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE--EECCEECCCCCHHHHHhC
Confidence 3678899999988889999999999999999999999999999999999985 47999 889988753 1245
Q ss_pred cceeeccChHHHHH-HHHHHhccccee------e--ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 148 DLSFKAEDRVENIR-RIEKIEMPAVQC------C--QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 148 ~ig~v~q~~~~~~~-~v~~~~~~g~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
.+||++|++..... ++.+...++... . .........+...........++....+|+|++||+.++++...
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence 79999998642211 344433332110 0 00000000111011110001123467899999999999998765
Q ss_pred cC
Q 027590 219 NH 220 (221)
Q Consensus 219 ~~ 220 (221)
++
T Consensus 159 ~p 160 (500)
T TIGR02633 159 QA 160 (500)
T ss_pred CC
Confidence 43
No 248
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.73 E-value=4.9e-18 Score=144.82 Aligned_cols=138 Identities=16% Similarity=0.101 Sum_probs=92.6
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-c----cCceEEEEECCccccc--ccccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H----WRGKLTYILDGDNCRH--GLNRD 148 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~----~~G~i~~~l~g~~~~~--~~~~~ 148 (221)
.+++.|++++| ...+++++||++.+||+++|+|+||||||||+++|+|++ | ++|++ .++|.++.. ..++.
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i--~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV--LLDGKPVAPCALRGRK 80 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE--EECCeeccccccccce
Confidence 56788899888 567999999999999999999999999999999999998 5 67999 889988753 22357
Q ss_pred ceeeccChHHHH---HHHHHHhc-----ccceeeehhhhhcccccccchhh--HHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 149 LSFKAEDRVENI---RRIEKIEM-----PAVQCCQKEISLRCSWMCHFKCV--RQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 149 ig~v~q~~~~~~---~~v~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
++|++|++...+ ..+.+... .+... . ......+....... ....++....+|.|++||+.++++...
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 157 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPA--D-DATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC 157 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCCh--H-HHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc
Confidence 999999863111 11111111 11100 0 00001111111110 112355567899999999999998765
Q ss_pred c
Q 027590 219 N 219 (221)
Q Consensus 219 ~ 219 (221)
+
T Consensus 158 ~ 158 (254)
T PRK10418 158 E 158 (254)
T ss_pred C
Confidence 4
No 249
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.7e-18 Score=159.14 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=94.8
Q ss_pred eeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccccceeec
Q 027590 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDLSFKA 153 (221)
Q Consensus 80 ~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~ig~v~ 153 (221)
+|++++|++.++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++.. ..++.++|++
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI--LFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEE--EECCEECCCCCHHHHHhCCEEEEe
Confidence 46778888888999999999999999999999999999999999998 688999 899988742 2346799999
Q ss_pred cChHHHHH-HHHHHhcccceeeehh-------hhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENIR-RIEKIEMPAVQCCQKE-------ISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++..... ++.+...++....... ......+...... ....++...++|+|++||+.++++...++
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDI-DIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCC-CCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 98743222 5555544432111000 0000000000000 01224456789999999999999876543
No 250
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.2e-18 Score=152.05 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=90.7
Q ss_pred eeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--------ccccccee
Q 027590 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------GLNRDLSF 151 (221)
Q Consensus 81 ~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------~~~~~ig~ 151 (221)
|+++.|+...+ ++||++++||+++|+||||||||||+++|+|++ |++|++ .++|+++.. ..++.++|
T Consensus 5 ~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I--~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRI--VLNGRVLFDAEKGICLPPEKRRIGY 80 (352)
T ss_pred EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEccccccccccchhhCCEEE
Confidence 77888876543 899999999999999999999999999999998 688999 889988642 23568999
Q ss_pred eccChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|+...... ++.+....+.... .......+...... .+..++...++|+|++||+.++++...+.
T Consensus 81 v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~l~~~gl-~~~~~~~~~~LSgGq~qRvalaraL~~~p 147 (352)
T PRK11144 81 VFQDARLFPHYKVRGNLRYGMAKS--MVAQFDKIVALLGI-EPLLDRYPGSLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred EcCCcccCCCCcHHHHHHhhhhhh--hHHHHHHHHHHcCC-chhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9998643221 3444433321100 00000111111111 12345566889999999999999877653
No 251
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=9.9e-19 Score=140.28 Aligned_cols=144 Identities=17% Similarity=0.148 Sum_probs=102.1
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---------
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------- 143 (221)
.+++++.++++.|+....+++|||++.+||+++|+|+||||||||+++|++.+ |+.|.+.|...+.....
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 45788889999999999999999999999999999999999999999999999 78899987654433221
Q ss_pred --cccccceeeccChHHHHH-H------HHHHhc-ccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHh
Q 027590 144 --GLNRDLSFKAEDRVENIR-R------IEKIEM-PAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 144 --~~~~~ig~v~q~~~~~~~-~------v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (221)
..+.+-|||.|||..-++ . ++|-.. .|.--.-.+......|....+.+-.++++.-+.+++||+||..++
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiA 163 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHH
Confidence 245678999999865544 2 222111 111111111122223544444455556666778899999999998
Q ss_pred hhhh
Q 027590 214 LMIH 217 (221)
Q Consensus 214 ~~~~ 217 (221)
+...
T Consensus 164 RnLV 167 (258)
T COG4107 164 RNLV 167 (258)
T ss_pred HHhc
Confidence 8543
No 252
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.72 E-value=7e-18 Score=155.75 Aligned_cols=144 Identities=20% Similarity=0.199 Sum_probs=96.4
Q ss_pred cceeeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-c----CceEEEEECCccccc--
Q 027590 75 TVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-W----RGKLTYILDGDNCRH-- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~----~G~i~~~l~g~~~~~-- 143 (221)
++++++|++..|.. ..++++|||++++||+++|+|+|||||||++++|.|++| . +|+| .|+|+++..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I--~~~g~dl~~l~ 81 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV--ILDGRDLLGLS 81 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE--EECCcchhcCC
Confidence 36777887776642 369999999999999999999999999999999999996 3 5888 899987754
Q ss_pred ------cccccceeeccChHHHH-------HHHHHHhcccc-eeeehhhhhcccccccchhh-HHHHHHHHHHHhhhcch
Q 027590 144 ------GLNRDLSFKAEDRVENI-------RRIEKIEMPAV-QCCQKEISLRCSWMCHFKCV-RQGTQRAFTSLHEKGRS 208 (221)
Q Consensus 144 ------~~~~~ig~v~q~~~~~~-------~~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 208 (221)
.+.++|+|+||++-..+ ..+.++..... .....+......++...... .+..++.--++|+||||
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 35578999999862221 24445444421 11111111111111000000 11114567789999999
Q ss_pred hHHHhhhhhccC
Q 027590 209 RVLLGLMIHMNH 220 (221)
Q Consensus 209 ~~~~~~~~~~~~ 220 (221)
|+.++.+...++
T Consensus 162 Rv~iAmALa~~P 173 (539)
T COG1123 162 RVMIAMALALKP 173 (539)
T ss_pred HHHHHHHHhCCC
Confidence 999999876553
No 253
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.6e-18 Score=144.61 Aligned_cols=141 Identities=16% Similarity=0.047 Sum_probs=93.3
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc------c
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH------G 144 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~------~ 144 (221)
-++.|+++.|+..++++++||++.+|++++|+|+||||||||+++|+|+.+ ++|++ .++|.++.. .
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i--~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL--DIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEE--EECCEehHhcccchHH
Confidence 456788888887889999999999999999999999999999999999973 47999 889987742 2
Q ss_pred ccccceeeccChHHHHHHHHHHhcccce--ee----ehhhhhcccccccchhh---HHHHHHHHHHHhhhcchhHHHhhh
Q 027590 145 LNRDLSFKAEDRVENIRRIEKIEMPAVQ--CC----QKEISLRCSWMCHFKCV---RQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~~~v~~~~~~g~~--~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
+++.++|++|++.....++.+...++.. .. .........+....... ..........++.|++||+.++++
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 163 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARA 163 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHH
Confidence 4567999999864221233333222100 00 00000000000000000 112334567899999999999998
Q ss_pred hhcc
Q 027590 216 IHMN 219 (221)
Q Consensus 216 ~~~~ 219 (221)
...+
T Consensus 164 l~~~ 167 (251)
T PRK14244 164 IAVK 167 (251)
T ss_pred HhcC
Confidence 7654
No 254
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.7e-17 Score=152.17 Aligned_cols=137 Identities=18% Similarity=0.154 Sum_probs=104.7
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccc
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNR 147 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~ 147 (221)
.++++.+|++++|+.+++|++|||++++||+++|+|.||||||||+|.|+|.+ |++|+| +++|+.+.- ..+.
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I--~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI--LIDGKPVAFSSPRDALAA 83 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE--EECCEEccCCCHHHHHhC
Confidence 34788999999999999999999999999999999999999999999999999 688999 999998752 3556
Q ss_pred cceeeccChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHH-------------HHHHHhhhcchhHHHh
Q 027590 148 DLSFKAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQR-------------AFTSLHEKGRSRVLLG 213 (221)
Q Consensus 148 ~ig~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~ 213 (221)
-|+.|+|+....-. +|++...+|+.+...+ ........++.+.+ .+..|+.++||-+.++
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~------g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRF------GLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCC------CccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHH
Confidence 79999999864444 7888877776654320 00112233333333 3445566888888888
Q ss_pred hhhhc
Q 027590 214 LMIHM 218 (221)
Q Consensus 214 ~~~~~ 218 (221)
++...
T Consensus 158 rAl~~ 162 (500)
T COG1129 158 RALSF 162 (500)
T ss_pred HHHhc
Confidence 87654
No 255
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.72 E-value=1.9e-17 Score=155.72 Aligned_cols=142 Identities=18% Similarity=0.142 Sum_probs=100.1
Q ss_pred ceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 76 ~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
-++.+|++++|.+ .++++++||++++|+.++|+|+||||||||+++|+|++ |.+|+| .++|.++.+ .+++.
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I--~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI--LLDGHDLADYTLASLRRQ 407 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE--EECCEeHHhcCHHHHHhh
Confidence 4789999999953 56899999999999999999999999999999999999 688999 899988864 56788
Q ss_pred ceeeccChHHHHHHHHHHhcccce---eeehhhhhcc-----ccc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAVQ---CCQKEISLRC-----SWM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~~---~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|++|++.-.-.++.+...++.. ......+... .+. ...........+.-..+|+|+|||..++++...+
T Consensus 408 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred ceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999986555577776665431 0000000000 000 0000001111112245899999999999987654
No 256
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.72 E-value=1e-17 Score=141.99 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=68.3
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCceEEEEECCccccc-----ccccc
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILDGDNCRH-----GLNRD 148 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l---~~~G~i~~~l~g~~~~~-----~~~~~ 148 (221)
++++|+++.|+..++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..+..
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i--~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV--EFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEE--EECCCccccCCHHHHhhcc
Confidence 56788999998788999999999999999999999999999999999994 578999 899988753 12356
Q ss_pred ceeeccChH
Q 027590 149 LSFKAEDRV 157 (221)
Q Consensus 149 ig~v~q~~~ 157 (221)
++|++|++.
T Consensus 80 i~~~~q~~~ 88 (248)
T PRK09580 80 IFMAFQYPV 88 (248)
T ss_pred eEEEecCch
Confidence 999999864
No 257
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.72 E-value=1.5e-17 Score=139.29 Aligned_cols=141 Identities=15% Similarity=0.156 Sum_probs=93.1
Q ss_pred ceeeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc----cCceEEEEECCccccc-ccc
Q 027590 76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRH-GLN 146 (221)
Q Consensus 76 ~~~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~----~~G~i~~~l~g~~~~~-~~~ 146 (221)
++...++++.|.. .++++++||++++||+++|+||||||||||+++|+|+++ ++|++ .++|+++.. ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i--~~~g~~~~~~~~~ 80 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQI--LFNGQPRKPDQFQ 80 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEE--EECCEECChHHhc
Confidence 3456677777743 579999999999999999999999999999999999985 57999 889987753 356
Q ss_pred ccceeeccChHHHHH-HHHHHhcccce---e--ee-hhh-hhccc-ccccchhhHHHHHHHHHHHhhhcchhHHHhhhhh
Q 027590 147 RDLSFKAEDRVENIR-RIEKIEMPAVQ---C--CQ-KEI-SLRCS-WMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIH 217 (221)
Q Consensus 147 ~~ig~v~q~~~~~~~-~v~~~~~~g~~---~--~~-~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (221)
+.++|++|++..... ++.+...++.. . .. ... ..... ..... ......++....+|.|++||+.++++..
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL-ALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh-cchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 779999998643222 34443332110 0 00 000 00000 00000 1112233456788999999999999876
Q ss_pred cc
Q 027590 218 MN 219 (221)
Q Consensus 218 ~~ 219 (221)
.+
T Consensus 160 ~~ 161 (226)
T cd03234 160 WD 161 (226)
T ss_pred hC
Confidence 54
No 258
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.9e-18 Score=155.32 Aligned_cols=141 Identities=17% Similarity=0.138 Sum_probs=98.5
Q ss_pred ccceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccccc----cccc
Q 027590 74 STVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 74 ~~~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~----~~~~ 147 (221)
..-++..|++|.|. .+++++||||++++|++++++||||+||||++|+|.++.. .+|.| .+||+|+++ .+++
T Consensus 535 ~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI--~iDgqdIrnvt~~SLRs 612 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI--TIDGQDIRNVTQSSLRS 612 (790)
T ss_pred CCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceE--EEcCchHHHHHHHHHHH
Confidence 44677889999995 6789999999999999999999999999999999999984 88999 899999986 6899
Q ss_pred cceeeccChHHHHHHHHHHhcccceeee------hhh--hhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 148 DLSFKAEDRVENIRRIEKIEMPAVQCCQ------KEI--SLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~g~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
.||.||||.-..-.++.+..+.+..... ++. ..-+......+.-..++.++=-.+++|++||+++++..
T Consensus 613 ~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARti 689 (790)
T KOG0056|consen 613 SIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTI 689 (790)
T ss_pred hcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHH
Confidence 9999999852211222222222111000 000 00000111112233445555567899999999999865
No 259
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=1.7e-17 Score=163.54 Aligned_cols=147 Identities=18% Similarity=0.128 Sum_probs=107.7
Q ss_pred ceeccccceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-
Q 027590 69 NLCQNSTVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH- 143 (221)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~- 143 (221)
........++.+|+.|+|.. ..+|+++||.|++|++++|+|+|||||||++++|.+++ |++|+| ++||.++..
T Consensus 343 ~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V--~idG~di~~~ 420 (1228)
T KOG0055|consen 343 VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEV--LIDGEDIRNL 420 (1228)
T ss_pred cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceE--EEcCccchhc
Confidence 33346668999999999964 46899999999999999999999999999999999999 899999 999999975
Q ss_pred ---cccccceeeccChHHHHHHHHHHhcccceeee-----------hhhhhcccccccchhhHHHHHHHHHHHhhhcchh
Q 027590 144 ---GLNRDLSFKAEDRVENIRRIEKIEMPAVQCCQ-----------KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSR 209 (221)
Q Consensus 144 ---~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (221)
.++..||.|.|+|-..-.++.|....|.--.. .+...+. .....-+...-+.=-+|++|++||
T Consensus 421 ~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~---~lp~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 421 NLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFIL---KLPDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred chHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHH---hhHHhhcccccCCCCCCChHHHHH
Confidence 68889999999995444577777766542111 0000000 000111112222223488999999
Q ss_pred HHHhhhhhccC
Q 027590 210 VLLGLMIHMNH 220 (221)
Q Consensus 210 ~~~~~~~~~~~ 220 (221)
++++++.-.++
T Consensus 498 IAIARalv~~P 508 (1228)
T KOG0055|consen 498 IAIARALVRNP 508 (1228)
T ss_pred HHHHHHHHhCC
Confidence 99999876653
No 260
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=7.7e-18 Score=149.09 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=98.8
Q ss_pred ccceeeeeeeEecC--CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCccccc--
Q 027590 74 STVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRH-- 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~--~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~-- 143 (221)
.++++++|++++|. ...+|+++||+|++|++++|+|+||||||||+++|+|+.+ ++|+| .++|.++..
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I--~idG~~i~~~~ 155 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI--YFLGTNTRSKK 155 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE--EECCEEccccc
Confidence 34788999999884 4579999999999999999999999999999999999973 47999 899999852
Q ss_pred ----cccccceeeccChHHHHHHHHHHhccccee--e--ehhh-hhccccc---ccchhhHHHHHHHHHHHhhhcchhHH
Q 027590 144 ----GLNRDLSFKAEDRVENIRRIEKIEMPAVQC--C--QKEI-SLRCSWM---CHFKCVRQGTQRAFTSLHEKGRSRVL 211 (221)
Q Consensus 144 ----~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~--~--~~~~-~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (221)
.+++.++|++|++...-.++.+....+... . .... .....+. ...........+....+|.|++||+.
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC 235 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHH
Confidence 356789999999743322343333322100 0 0000 0000000 00001123455667789999999999
Q ss_pred Hhhhhhcc
Q 027590 212 LGLMIHMN 219 (221)
Q Consensus 212 ~~~~~~~~ 219 (221)
++++...+
T Consensus 236 LARAl~~~ 243 (329)
T PRK14257 236 IARAIALE 243 (329)
T ss_pred HHHHHHhC
Confidence 99987654
No 261
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=6.9e-18 Score=144.55 Aligned_cols=143 Identities=15% Similarity=0.086 Sum_probs=94.8
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcccc------CceEEEEECCccccc-----
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW------RGKLTYILDGDNCRH----- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~------~G~i~~~l~g~~~~~----- 143 (221)
++++++|+++.|+...+++++||++++|++++|+|+||||||||+++|+|++++ +|++ .++|+++..
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i--~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRV--EFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceE--EECCEEhhccccch
Confidence 367889999999877899999999999999999999999999999999999954 6888 789987631
Q ss_pred -cccccceeeccChHHHHHHHHHHhcccc-----eeeehhhhhcccccccch---hhHHHHHHHHHHHhhhcchhHHHhh
Q 027590 144 -GLNRDLSFKAEDRVENIRRIEKIEMPAV-----QCCQKEISLRCSWMCHFK---CVRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 144 -~~~~~ig~v~q~~~~~~~~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
..++.++|++|++.....++.+...++. ............+..... .......+....++.|+++|+.+++
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 2456799999986421123333332211 000000000000000000 0011234445678999999999999
Q ss_pred hhhcc
Q 027590 215 MIHMN 219 (221)
Q Consensus 215 ~~~~~ 219 (221)
+...+
T Consensus 164 al~~~ 168 (261)
T PRK14258 164 ALAVK 168 (261)
T ss_pred HHhcC
Confidence 87654
No 262
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.72 E-value=7.5e-18 Score=160.53 Aligned_cols=148 Identities=17% Similarity=0.148 Sum_probs=97.4
Q ss_pred eccccceeeeeeeEecC----CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccc---
Q 027590 71 CQNSTVAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR--- 142 (221)
Q Consensus 71 ~~~~~~~~~~~~~~~~~----~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~--- 142 (221)
++.+++++++|+++.|+ ..++++++||++++||+++|+|+||||||||+++|+|++ |++|.| .++|.++.
T Consensus 7 ~~~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i--~~~g~~~~~~~ 84 (623)
T PRK10261 7 LDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV--QCDKMLLRRRS 84 (623)
T ss_pred CCCCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE--EECCEEecccc
Confidence 34556788999999885 357999999999999999999999999999999999999 578998 77775331
Q ss_pred -------c-------cc-cccceeeccChHHHH---HHHHHHhcccc-----eeeehhhhhcccccccchhh--HHHHHH
Q 027590 143 -------H-------GL-NRDLSFKAEDRVENI---RRIEKIEMPAV-----QCCQKEISLRCSWMCHFKCV--RQGTQR 197 (221)
Q Consensus 143 -------~-------~~-~~~ig~v~q~~~~~~---~~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~ 197 (221)
. .+ .+.|||++|++...+ .++.+....+. ............+....... ....++
T Consensus 85 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 164 (623)
T PRK10261 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR 164 (623)
T ss_pred ccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC
Confidence 0 11 247999999863111 13333322210 00000001111111111111 123566
Q ss_pred HHHHHhhhcchhHHHhhhhhccC
Q 027590 198 AFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 198 ~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
...+||+|++||+.++++...+.
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P 187 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRP 187 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCC
Confidence 67889999999999999876653
No 263
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.72 E-value=2.1e-17 Score=156.30 Aligned_cols=143 Identities=16% Similarity=0.180 Sum_probs=100.7
Q ss_pred cceeeeeeeEecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 75 TVAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
+.++.++++++|++ .++++++||++++|+.++|+|+||||||||+++|+|++ |.+|.| .+||.++.+ .+++.
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I--~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI--LIDGTDIRTVTRASLRRN 410 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE--EECCEEhhhCCHHHHHhh
Confidence 35788999999964 57999999999999999999999999999999999999 688999 899998865 56788
Q ss_pred ceeeccChHHHHHHHHHHhcccceeee--hhhhh---cc--ccc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAVQCCQ--KEISL---RC--SWM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~~~~~--~~~~~---~~--~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|+|++|++.-.-.++.+...++.-... ..... .. .+. ...........+.-..+|+|++||..++++...+
T Consensus 411 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 411 IAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred eEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999986555567776666431110 00000 00 000 0000011111122235899999999999987654
No 264
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=7.4e-18 Score=142.18 Aligned_cols=138 Identities=19% Similarity=0.167 Sum_probs=93.1
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeecc
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKAE 154 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~q 154 (221)
++.++++.|+.. +++++||++++||+++|+|+||||||||+++|+|++ |++|++ +++|.++.. ..++.++|++|
T Consensus 2 ~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v--~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 2 KVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI--LLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred eeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE--EECCEEcCcCChhHcCEEEEee
Confidence 467888888654 899999999999999999999999999999999998 678999 889988754 23567999999
Q ss_pred ChHHHH-HHHHHHhccccee--e--ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 155 DRVENI-RRIEKIEMPAVQC--C--QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 155 ~~~~~~-~~v~~~~~~g~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+..... .++.+....+... . .........+..... .....++....++.|+++|+.++++...+
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrl~laral~~~ 147 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLG-IDHLLNRKPETLSGGEQQRVAIARALVVN 147 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-ChhHHhcCcccCCHHHHHHHHHHHHHHcC
Confidence 853321 1333333221100 0 000000000111111 12334556678999999999999987654
No 265
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.71 E-value=2.3e-17 Score=129.55 Aligned_cols=78 Identities=18% Similarity=0.115 Sum_probs=65.8
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccCh
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~ 156 (221)
+..++++.|+...+++++||++++||+++|+|+||||||||+++|+|++ |.+|++ .++|. ..++|++|-.
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i--~~~~~-------~~i~~~~~lS 72 (144)
T cd03221 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV--TWGST-------VKIGYFEQLS 72 (144)
T ss_pred EEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE--EECCe-------EEEEEEccCC
Confidence 4678888887778999999999999999999999999999999999999 588999 78874 3689999855
Q ss_pred HHHHHHHH
Q 027590 157 VENIRRIE 164 (221)
Q Consensus 157 ~~~~~~v~ 164 (221)
.-+.++++
T Consensus 73 ~G~~~rv~ 80 (144)
T cd03221 73 GGEKMRLA 80 (144)
T ss_pred HHHHHHHH
Confidence 44444444
No 266
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.71 E-value=2.2e-17 Score=169.35 Aligned_cols=143 Identities=15% Similarity=0.059 Sum_probs=101.9
Q ss_pred cceeeeeeeEecC---CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-c-----------------------
Q 027590 75 TVAKSTNILWHKN---SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H----------------------- 127 (221)
Q Consensus 75 ~~~~~~~~~~~~~---~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~----------------------- 127 (221)
.-++.+|++|+|. +.++|+++||++++|++++|+|+||||||||+++|+|++ |
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 3578899999995 347999999999999999999999999999999999998 5
Q ss_pred -------------------------------cCceEEEEECCccccc----cccccceeeccChHHHHHHHHHHhcccce
Q 027590 128 -------------------------------WRGKLTYILDGDNCRH----GLNRDLSFKAEDRVENIRRIEKIEMPAVQ 172 (221)
Q Consensus 128 -------------------------------~~G~i~~~l~g~~~~~----~~~~~ig~v~q~~~~~~~~v~~~~~~g~~ 172 (221)
++|+| ++||.++++ .+++.||||+|++.-.-.++.+...+|.-
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I--~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI--LLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeE--EECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC
Confidence 37999 899999875 67889999999986555577777666531
Q ss_pred eeehhhhhccccc---------ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 173 CCQKEISLRCSWM---------CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 173 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
.. +..+...... .....-...+.+.-..||+|+|||+.++++.-+++
T Consensus 1322 ~a-t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p 1377 (1466)
T PTZ00265 1322 DA-TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP 1377 (1466)
T ss_pred CC-CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 10 0000000000 00000011111122358899999999999876653
No 267
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.71 E-value=7.2e-18 Score=150.61 Aligned_cols=135 Identities=14% Similarity=0.064 Sum_probs=91.1
Q ss_pred eeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--------ccccccee
Q 027590 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------GLNRDLSF 151 (221)
Q Consensus 81 ~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------~~~~~ig~ 151 (221)
|+++.|++..+ ++||++++||+++|+||||||||||+++|+|++ |++|++ .++|+++.. ..++.++|
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I--~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI--VLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECccCccccccchhhCCeEE
Confidence 67788876554 899999999999999999999999999999998 688999 889988742 23567999
Q ss_pred eccChHHHHH-HHHHHhcccceee--ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDRVENIR-RIEKIEMPAVQCC--QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~~~~~~-~v~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++..... ++.+....+.... .........+..... .....++...++|.|++||+.++++...+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~g-L~~~~~~~~~~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG-IGHLLGRLPGRLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcC-ChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9998643221 4444433321100 000000011111111 123345566789999999999999876653
No 268
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.71 E-value=1.1e-17 Score=156.49 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=96.8
Q ss_pred cceeeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc------cCceEEEEECCcccccc
Q 027590 75 TVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH------WRGKLTYILDGDNCRHG 144 (221)
Q Consensus 75 ~~~~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~------~~G~i~~~l~g~~~~~~ 144 (221)
+++++.++++.|+. .++++++||++++||+++|+||||||||||+|+|+|+++ ++|++ .++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i--~~~g~~i~~~ 81 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI--RFHGESLLHA 81 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE--EECCEecccC
Confidence 36788899998963 579999999999999999999999999999999999985 47999 8899887531
Q ss_pred -------c-cccceeeccChHHHH---HHHHHHhcccc-----eeeehhhhhcccccccchhh--HHHHHHHHHHHhhhc
Q 027590 145 -------L-NRDLSFKAEDRVENI---RRIEKIEMPAV-----QCCQKEISLRCSWMCHFKCV--RQGTQRAFTSLHEKG 206 (221)
Q Consensus 145 -------~-~~~ig~v~q~~~~~~---~~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~ 206 (221)
. ++.+||++|++...+ ..+.+.+.... .................... ....++...+||+|+
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 1 257999999964211 13333322110 00000001011111111111 123456678999999
Q ss_pred chhHHHhhhhhccC
Q 027590 207 RSRVLLGLMIHMNH 220 (221)
Q Consensus 207 ~~~~~~~~~~~~~~ 220 (221)
+||+.++++...++
T Consensus 162 ~qrv~iAraL~~~p 175 (529)
T PRK15134 162 RQRVMIAMALLTRP 175 (529)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999887653
No 269
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.71 E-value=3.6e-17 Score=148.20 Aligned_cols=96 Identities=19% Similarity=0.174 Sum_probs=82.7
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----ccccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~ 148 (221)
+.++..++++.|+.+.++++|||++.+||+.+|+|+||||||||+++|.|++ |++|+| +++|+.+.- ..+..
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI--~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI--RVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE--EECCEEeccCCHHHHHHcC
Confidence 4677889999999999999999999999999999999999999999999999 899999 999998752 46677
Q ss_pred ceeeccChHHHHH-HHHHHhcccce
Q 027590 149 LSFKAEDRVENIR-RIEKIEMPAVQ 172 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~g~~ 172 (221)
||+|+|+....-. ++.|...+|.-
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e 105 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLE 105 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCc
Confidence 9999998743333 67777777653
No 270
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=8.9e-18 Score=139.54 Aligned_cols=134 Identities=15% Similarity=0.067 Sum_probs=90.0
Q ss_pred eeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--------cccccce
Q 027590 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------GLNRDLS 150 (221)
Q Consensus 80 ~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------~~~~~ig 150 (221)
++++++|++..+ ++||++++ ++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.++
T Consensus 4 ~~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 4 VDIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTI--VLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEecccccchhhhhhHhhcEE
Confidence 488899988765 99999999 999999999999999999999998 688999 889987642 2346799
Q ss_pred eeccChHHHHH-HHHHHhcccceeee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIR-RIEKIEMPAVQCCQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++|++..... ++.+...++..... ........+...... ....++....+|.|++||+.++++...+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-DHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCC-HhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 99998632211 33333222110000 000001111111111 2334566778999999999999987654
No 271
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.70 E-value=1.6e-17 Score=153.87 Aligned_cols=144 Identities=14% Similarity=0.133 Sum_probs=97.4
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc--cCceEEEEECCccccc-----ccc
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WRGKLTYILDGDNCRH-----GLN 146 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~--~~G~i~~~l~g~~~~~-----~~~ 146 (221)
.+++++.|+++.|+...+++++||++++||+++|+||||||||||+++|+|+++ ++|++ +++|+++.. ..+
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i--~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDL--TLFGRRRGSGETIWDIK 335 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeE--EEecccCCCCCCHHHHH
Confidence 346889999999987789999999999999999999999999999999999876 38999 888876532 234
Q ss_pred ccceeeccChHHHH---HHHHHHhccccee---e----eh-hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 147 RDLSFKAEDRVENI---RRIEKIEMPAVQC---C----QK-EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 147 ~~ig~v~q~~~~~~---~~v~~~~~~g~~~---~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
+.++|++|++.... ..+.++...+... . .. .......+........+..++....+|.|++||+.++++
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 67999999864322 1233332211100 0 00 000001111111111113456678999999999999998
Q ss_pred hhcc
Q 027590 216 IHMN 219 (221)
Q Consensus 216 ~~~~ 219 (221)
...+
T Consensus 416 l~~~ 419 (490)
T PRK10938 416 LVKH 419 (490)
T ss_pred HhcC
Confidence 7654
No 272
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.70 E-value=4.7e-18 Score=153.02 Aligned_cols=135 Identities=18% Similarity=0.078 Sum_probs=90.2
Q ss_pred eEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCc----cccc----c----ccccc
Q 027590 83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD----NCRH----G----LNRDL 149 (221)
Q Consensus 83 ~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~----~~~~----~----~~~~i 149 (221)
...|+...+++++||++++||+++|+|+||||||||+++|+|++ |++|+| +++|+ ++.. . .++.+
T Consensus 31 ~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I--~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 31 LDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSV--LVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE--EECCEecccccccCCHHHHHHHhcCCE
Confidence 34577888999999999999999999999999999999999999 688999 88986 3322 1 23579
Q ss_pred eeeccChHHHH-HHHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 150 SFKAEDRVENI-RRIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 150 g~v~q~~~~~~-~~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|++|+..... .++.+...++.. ...........+...... ....++...++|.|++||+.++++...++
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL-~~~~~~~~~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGL-AQWADKKPGELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999864332 244444433210 000000000111111111 12344566789999999999999877653
No 273
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-17 Score=142.79 Aligned_cols=147 Identities=13% Similarity=0.098 Sum_probs=95.2
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEE----EEECCccccc----c
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLT----YILDGDNCRH----G 144 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~----~~l~g~~~~~----~ 144 (221)
.+++.+.+++++|+...+++++||++.+||+++|+|+||||||||+++|+|++ |++|++. +.++|.++.. .
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 45788999999999989999999999999999999999999999999999998 5776651 0344555432 2
Q ss_pred ccccceeeccChHHHHH-HHHHHhcccc-----eeeehhhhhcccccccchhh---HHHHHHHHHHHhhhcchhHHHhhh
Q 027590 145 LNRDLSFKAEDRVENIR-RIEKIEMPAV-----QCCQKEISLRCSWMCHFKCV---RQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~~-~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
++..++|++|++..... ++.+....+. ..-................. .+........++.|+++|+.++++
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 167 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA 167 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence 45679999998643221 3333332211 00000000000000000100 112334567789999999999998
Q ss_pred hhccC
Q 027590 216 IHMNH 220 (221)
Q Consensus 216 ~~~~~ 220 (221)
...++
T Consensus 168 l~~~P 172 (257)
T PRK14246 168 LALKP 172 (257)
T ss_pred HHcCC
Confidence 76553
No 274
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.70 E-value=2.1e-17 Score=137.63 Aligned_cols=139 Identities=14% Similarity=0.081 Sum_probs=90.2
Q ss_pred eeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--------ccccc
Q 027590 79 STNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------GLNRD 148 (221)
Q Consensus 79 ~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------~~~~~ 148 (221)
+.++.++|+ ...+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.
T Consensus 3 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i--~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 3 VTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV--HWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE--EECCcccccccccccchhhcce
Confidence 456778885 567999999999999999999999999999999999998 688999 889987642 13456
Q ss_pred ceeeccChHHHHHHHHHHhcccceeeeh-hhhhcccccccchh-------hHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAVQCCQK-EISLRCSWMCHFKC-------VRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++|++...-.++.+...+....... ........ ..... ..+........++.|+++|+.++++...+.
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDAC-SLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHh-CcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 9999998742212444443332100000 00000000 00000 000012235678999999999999876543
No 275
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.70 E-value=5.6e-17 Score=156.17 Aligned_cols=143 Identities=21% Similarity=0.165 Sum_probs=101.1
Q ss_pred cceeeeeeeEecC--CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~--~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
..++.+|++++|+ ...+++++||++++|+.++|+|+||||||||+++|+|++ |++|+| ++||.++.+ .+++
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I--~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV--LVDGVDLAIADPAWLRR 531 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEehhhCCHHHHHH
Confidence 3578899999995 346999999999999999999999999999999999998 688999 899999875 5678
Q ss_pred cceeeccChHHHHHHHHHHhcccceee--ehhhhhcc-----ccc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 148 DLSFKAEDRVENIRRIEKIEMPAVQCC--QKEISLRC-----SWM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~g~~~~--~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.++||+|++.-.-.++.+...++.-.. ........ .+. ...........+.-..+|+|++||+.++++.-.+
T Consensus 532 ~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 532 QMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred hCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 899999997655557777666542110 00000000 000 0000001111222356889999999999987654
No 276
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.70 E-value=1.6e-17 Score=141.09 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=68.2
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc--c-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--L-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~--l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
++++++++++.|+...+++++||++++||+++|+|+||||||||+++|+|+ + |++|++ +++|.++.. ...+
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i--~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDI--LFKGESILDLEPEERAH 83 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceE--EECCEEcccCChhhhhe
Confidence 468889999999877899999999999999999999999999999999997 4 578999 889988754 1222
Q ss_pred -cceeeccCh
Q 027590 148 -DLSFKAEDR 156 (221)
Q Consensus 148 -~ig~v~q~~ 156 (221)
.++|++|++
T Consensus 84 ~~~~~~~q~~ 93 (252)
T CHL00131 84 LGIFLAFQYP 93 (252)
T ss_pred eeEEEEeccc
Confidence 478899985
No 277
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.70 E-value=4.4e-17 Score=153.50 Aligned_cols=143 Identities=17% Similarity=0.128 Sum_probs=97.9
Q ss_pred cceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccc
Q 027590 75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLN 146 (221)
Q Consensus 75 ~~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~ 146 (221)
+.++.+|++++|.. ..+++++||++++||.++|+|+||||||||+++|+|++ |.+|++ .+||.++.+ .++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I--~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI--LLDGVDLRQLDPAELR 413 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE--EECCEEHHhcCHHHHH
Confidence 35789999999963 46999999999999999999999999999999999999 678999 899988864 456
Q ss_pred ccceeeccChHHHHHHHHHHhcccceeee--hhhhhcc-----ccc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 147 RDLSFKAEDRVENIRRIEKIEMPAVQCCQ--KEISLRC-----SWM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 147 ~~ig~v~q~~~~~~~~v~~~~~~g~~~~~--~~~~~~~-----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
+.++|++|++.-.-.++.+...++.-... ....... .+. ...........+.-..+|+|++||+.++++...
T Consensus 414 ~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~ 493 (576)
T TIGR02204 414 ARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK 493 (576)
T ss_pred HhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 78999999985444455555554321100 0000000 000 000000111112234688999999999997654
Q ss_pred c
Q 027590 219 N 219 (221)
Q Consensus 219 ~ 219 (221)
+
T Consensus 494 ~ 494 (576)
T TIGR02204 494 D 494 (576)
T ss_pred C
Confidence 3
No 278
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.70 E-value=5.4e-17 Score=153.07 Aligned_cols=143 Identities=11% Similarity=0.032 Sum_probs=98.7
Q ss_pred ceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 76 ~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
.++.++++++|.. ..+++++||++++|+.++|+||||||||||+++|+|++ |++|++ .++|.++.. .+++.
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i--~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI--RFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE--EECCEEHhhCCHHHHHhh
Confidence 4678889998853 56999999999999999999999999999999999999 688999 899998864 46778
Q ss_pred ceeeccChHHHHHHHHHHhcccceeee--hhhh---hccc--cc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAVQCCQ--KEIS---LRCS--WM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~~~~~--~~~~---~~~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++|++.-.-.++.+...++.-... .... .... +. ...........+....+|+|++||+.++++...+.
T Consensus 391 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~ 470 (569)
T PRK10789 391 LAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA 470 (569)
T ss_pred eEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999975443466666555421100 0000 0000 00 00000011112223468999999999999876553
No 279
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.70 E-value=2.9e-17 Score=156.83 Aligned_cols=137 Identities=17% Similarity=0.171 Sum_probs=94.8
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeec
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA 153 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~ 153 (221)
.++++.|+++.|+..++++++||++++|++++|+||||||||||+++|+|++ |++|++ .+ |.++ .|||++
T Consensus 318 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i--~~-~~~~------~i~y~~ 388 (635)
T PRK11147 318 IVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI--HC-GTKL------EVAYFD 388 (635)
T ss_pred ceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE--EE-CCCc------EEEEEe
Confidence 4788999999998888999999999999999999999999999999999998 688998 66 4433 489999
Q ss_pred cChHHHH--HHHHHHhcccceee--ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENI--RRIEKIEMPAVQCC--QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~--~~v~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++.... .++.+.+..+.... .........+...+....+...+.+..||+|+++|+.++++...++
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p 459 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPS 459 (635)
T ss_pred CcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 9753111 13444333321100 0000000111111112223456678899999999999999876553
No 280
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.70 E-value=9.7e-17 Score=150.69 Aligned_cols=139 Identities=17% Similarity=0.115 Sum_probs=94.6
Q ss_pred ceeeeeeeEecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccc
Q 027590 76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~i 149 (221)
.++.+|++++|++ .++++++||++++|+.++|+|+||||||||+++|+|++ |++|+| .++|.++.+ .+++.+
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i--~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI--LLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEECCCCCHHHHhhhe
Confidence 4788999999964 56999999999999999999999999999999999999 688999 899999864 567889
Q ss_pred eeeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHH--HHHHHhhhcchhHHHhhhhhccC
Q 027590 150 SFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQR--AFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 150 g~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|++|++...-.++.+.... ..-....+..... .....-..-+. .-..+|+|++||+.++++...++
T Consensus 400 ~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~--~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~ 468 (547)
T PRK10522 400 SAVFTDFHLFDQLLGPEGKP--ANPALVEKWLERL--KMAHKLELEDGRISNLKLSKGQKKRLALLLALAEER 468 (547)
T ss_pred EEEecChhHHHHhhccccCc--hHHHHHHHHHHHc--CCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999985433344332000 0000000000000 00000000000 01368999999999999876553
No 281
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.69 E-value=8.7e-18 Score=152.60 Aligned_cols=148 Identities=22% Similarity=0.169 Sum_probs=99.6
Q ss_pred CCceeccccceeeeeeeEec--CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc
Q 027590 67 GNNLCQNSTVAKSTNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH 143 (221)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~ 143 (221)
.+.+-+.+..+.++++.+.. ..+++++++||++++||.++|+||||||||||+|+|.|.. |.+|.+ .+||-++++
T Consensus 325 ~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V--RLDga~l~q 402 (580)
T COG4618 325 RMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV--RLDGADLRQ 402 (580)
T ss_pred CCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcE--Eecchhhhc
Confidence 34444555678888887655 2568999999999999999999999999999999999998 688999 999999876
Q ss_pred ----cccccceeeccCh-------HHHHHHHHHHhcccceee----ehhhhhcccccccchhhHHHHHHHHHHHhhhcch
Q 027590 144 ----GLNRDLSFKAEDR-------VENIRRIEKIEMPAVQCC----QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRS 208 (221)
Q Consensus 144 ----~~~~~ig~v~q~~-------~~~~~~v~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (221)
.+.+.|||.||+. .||+.++++-+..-.+.- +...+.+-... ..=+..+-+.=..||+|+||
T Consensus 403 Wd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP---~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 403 WDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLP---QGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred CCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCc---CCccCccCCCCCCCCchHHH
Confidence 5788999999995 445544432111100000 00011000000 00011112222468889999
Q ss_pred hHHHhhhhhcc
Q 027590 209 RVLLGLMIHMN 219 (221)
Q Consensus 209 ~~~~~~~~~~~ 219 (221)
|..++++..-+
T Consensus 480 RIaLARAlYG~ 490 (580)
T COG4618 480 RIALARALYGD 490 (580)
T ss_pred HHHHHHHHcCC
Confidence 99999987644
No 282
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.69 E-value=1.2e-16 Score=150.30 Aligned_cols=86 Identities=21% Similarity=0.178 Sum_probs=73.6
Q ss_pred ceeeeeeeEecCC-----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cc
Q 027590 76 VAKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GL 145 (221)
Q Consensus 76 ~~~~~~~~~~~~~-----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~ 145 (221)
-++.+|++++|++ ..+++++||++++|++++|+||||||||||+++|+|++ |++|+| .++|.++.+ .+
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i--~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI--LLDGAAVSADSRDDY 414 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCCCCHHHH
Confidence 4778999999964 25899999999999999999999999999999999998 688999 899999865 46
Q ss_pred cccceeeccChHHHHHHH
Q 027590 146 NRDLSFKAEDRVENIRRI 163 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~~~v 163 (221)
++.++|++|++.-.-.++
T Consensus 415 ~~~i~~v~q~~~lf~~ti 432 (555)
T TIGR01194 415 RDLFSAIFADFHLFDDLI 432 (555)
T ss_pred HhhCcEEccChhhhhhhh
Confidence 688999999974333333
No 283
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.69 E-value=8.3e-17 Score=151.00 Aligned_cols=143 Identities=17% Similarity=0.099 Sum_probs=98.0
Q ss_pred cceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
..++.+|++++|+. .++++++||++++|+.++|+|+||||||||+++|+|++ |++|++ .++|.++.+ .+++
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i--~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV--RLDGADLKQWDRETFGK 392 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEehhhCCHHHHhh
Confidence 35788999999953 57999999999999999999999999999999999999 688999 899998864 4677
Q ss_pred cceeeccChHHHHHHHHHHhcccceee--ehhhhhcc-----ccc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 148 DLSFKAEDRVENIRRIEKIEMPAVQCC--QKEISLRC-----SWM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~g~~~~--~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.++|++|++.-.-.++.+...++.-.. ........ .+. ...........+....+|+|++||+.++++.-.+
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 899999997443345555544321100 00000000 000 0000001112223456889999999999987654
No 284
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.69 E-value=2.5e-17 Score=139.13 Aligned_cols=132 Identities=13% Similarity=0.020 Sum_probs=85.6
Q ss_pred EecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccceeeccC-hHH
Q 027590 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSFKAED-RVE 158 (221)
Q Consensus 84 ~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~v~q~-~~~ 158 (221)
..|+..++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.++|++|+ ...
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV--RVAGLVPWKRRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE--EECCEEccccchhhcccEEEEcCCcccc
Confidence 3467788999999999999999999999999999999999998 688999 889987532 345679999743 211
Q ss_pred HH-HHHHHHhcc-----cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 159 NI-RRIEKIEMP-----AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 159 ~~-~~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.. .++.+.... +... .........+..... ..+..+..+..+|.|+++|+.++++...+
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~g-l~~~~~~~~~~LS~G~~qrl~la~al~~~ 171 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPP-ARFKKRLDELSELLD-LEELLDTPVRQLSLGQRMRAEIAAALLHE 171 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcC-ChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 10 122222211 1000 000000000111111 12234556788999999999999887654
No 285
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.2e-17 Score=155.42 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=93.3
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~i 149 (221)
+++++|+++.|+ .+++++||++++|++++|+||||||||||+++|+|++ |++|+| .++|+++.. ..++.+
T Consensus 265 ~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I--~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI--RLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE--EECCEECCCCCHHHHHHCCc
Confidence 577888887653 4899999999999999999999999999999999998 688999 899987743 234679
Q ss_pred eeeccChH--HHH--HHHHHHhcccceee-----------e--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHH
Q 027590 150 SFKAEDRV--ENI--RRIEKIEMPAVQCC-----------Q--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLL 212 (221)
Q Consensus 150 g~v~q~~~--~~~--~~v~~~~~~g~~~~-----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (221)
||++|++. ..+ .++.+...++.... . ........+........+..++...++|+|++||+.+
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence 99999842 111 13444443321100 0 0000000111111111122345567899999999999
Q ss_pred hhhhhcc
Q 027590 213 GLMIHMN 219 (221)
Q Consensus 213 ~~~~~~~ 219 (221)
+++...+
T Consensus 421 Aral~~~ 427 (510)
T PRK09700 421 SKWLCCC 427 (510)
T ss_pred HHHHhcC
Confidence 9987654
No 286
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=1.1e-16 Score=129.13 Aligned_cols=135 Identities=17% Similarity=0.100 Sum_probs=93.9
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----------
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---------- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---------- 143 (221)
+.+.+.+++++||...+|++||++.++|+++.|+|.|||||||++|||+-+. |+.|.| .++|+.++-
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I--~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI--RVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceE--EECCeEEEeeeCCCCCeee
Confidence 3567788999999999999999999999999999999999999999999987 788999 889988753
Q ss_pred -------cccccceeeccChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHH-------------HHHHHH
Q 027590 144 -------GLNRDLSFKAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQ-------------RAFTSL 202 (221)
Q Consensus 144 -------~~~~~ig~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l 202 (221)
.++.++|+|||+-+.+-. ++.+.+.-.-+ ...........+.++ ..-..+
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPv---------hVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~L 153 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPV---------HVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHL 153 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcch---------HhhcCCHHHHHHHHHHHHHHhCchhhhhcCcccc
Confidence 133456666666544332 33332221000 000011112222222 333456
Q ss_pred hhhcchhHHHhhhhhccC
Q 027590 203 HEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~ 220 (221)
++|++||+.++++.+|.+
T Consensus 154 SGGQQQR~aIARaLameP 171 (256)
T COG4598 154 SGGQQQRVAIARALAMEP 171 (256)
T ss_pred CchHHHHHHHHHHHhcCC
Confidence 779999999999998865
No 287
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=4e-17 Score=152.73 Aligned_cols=136 Identities=15% Similarity=0.147 Sum_probs=94.7
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeec
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA 153 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~ 153 (221)
.++++.|+++.|+...+++++||++++|++++|+||||||||||+++|+|++ |++|+| .++++ ..+||++
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i--~~~~~-------~~i~~~~ 388 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV--KWSEN-------ANIGYYA 388 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCc-------eEEEEEc
Confidence 3688999999998888999999999999999999999999999999999998 688999 77763 3589999
Q ss_pred cChHHHH---HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENI---RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~---~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++...+ .++.+.+..-... .........+........+..++....+|+|++||+.++++...++
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 457 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWRQE-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKP 457 (530)
T ss_pred ccccccCCCCCcHHHHHHHhccC-CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCC
Confidence 9864211 1233322110000 0000001111111111123456678899999999999999877654
No 288
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.68 E-value=6.9e-17 Score=129.25 Aligned_cols=68 Identities=26% Similarity=0.282 Sum_probs=61.2
Q ss_pred CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--------cccccceeeccCh
Q 027590 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------GLNRDLSFKAEDR 156 (221)
Q Consensus 87 ~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------~~~~~ig~v~q~~ 156 (221)
++.++|++|+|.+++||.++|+||||||||||+-.++|+- |++|++ .+.|+++.+ ...+++|||||.-
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV--~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV--RLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceE--EEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 4678999999999999999999999999999999999997 799999 889998865 3557899999963
No 289
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.1e-17 Score=153.52 Aligned_cols=71 Identities=23% Similarity=0.214 Sum_probs=63.5
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccC
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~ 155 (221)
+++.|+++.|+..++++++||++++|++++|+||||||||||+|+|+|++ |++|++ .++|. ..+||++|+
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i--~~~~~-------~~i~~~~q~ 72 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV--SLDPN-------ERLGKLRQD 72 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EecCC-------CEEEEEecc
Confidence 57889999998888999999999999999999999999999999999998 578999 77763 358999997
Q ss_pred h
Q 027590 156 R 156 (221)
Q Consensus 156 ~ 156 (221)
+
T Consensus 73 ~ 73 (530)
T PRK15064 73 Q 73 (530)
T ss_pred C
Confidence 5
No 290
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.4e-17 Score=154.91 Aligned_cols=143 Identities=18% Similarity=0.307 Sum_probs=96.1
Q ss_pred cceeeeeeeEecC---CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc--cCceEEEEECCccccc-----c
Q 027590 75 TVAKSTNILWHKN---SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WRGKLTYILDGDNCRH-----G 144 (221)
Q Consensus 75 ~~~~~~~~~~~~~---~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~--~~G~i~~~l~g~~~~~-----~ 144 (221)
.+++++|+++.|+ ...+++++||++++|++++|+|+||||||||+|+|+|+++ ++|+| .++|+++.. .
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i--~~~g~~~~~~~~~~~ 335 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI--FIDGKPVKIRNPQQA 335 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEE--EECCEECCCCCHHHH
Confidence 3577888888883 4579999999999999999999999999999999999984 68999 889987742 2
Q ss_pred ccccceeeccChHH--HH--HHHHHHhccccee-e------eh--hhhhcccccccchhhHHHHHHHHHHHhhhcchhHH
Q 027590 145 LNRDLSFKAEDRVE--NI--RRIEKIEMPAVQC-C------QK--EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVL 211 (221)
Q Consensus 145 ~~~~ig~v~q~~~~--~~--~~v~~~~~~g~~~-~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (221)
.+..++|++|++.. .+ .++.+...++... . .. .......+...........++....+|+|++||+.
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~ 415 (506)
T PRK13549 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAV 415 (506)
T ss_pred HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHH
Confidence 34569999998631 11 1344443332110 0 00 00001111111111111245567889999999999
Q ss_pred Hhhhhhcc
Q 027590 212 LGLMIHMN 219 (221)
Q Consensus 212 ~~~~~~~~ 219 (221)
++++...+
T Consensus 416 lA~al~~~ 423 (506)
T PRK13549 416 LAKCLLLN 423 (506)
T ss_pred HHHHHhhC
Confidence 99987654
No 291
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.6e-17 Score=149.17 Aligned_cols=141 Identities=16% Similarity=0.115 Sum_probs=100.3
Q ss_pred eeeeeeeEecCCc-cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccccc----cccccce
Q 027590 77 AKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 77 ~~~~~~~~~~~~~-~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
++..++++.|++. ++++++||++++|+.++|+|+||||||||+++|.|+++ +.|+| .+||.++.+ .++++++
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I--~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI--RVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE--EECCccccccCHHHHHhHee
Confidence 3455999999654 89999999999999999999999999999999999995 88999 999988865 5789999
Q ss_pred eeccChHHHHHHHHHHhcccceeeeh--hhhhcc---c--ccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIRRIEKIEMPAVQCCQK--EISLRC---S--WMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~~v~~~~~~g~~~~~~--~~~~~~---~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
||+|++--.-.++.+...++...... ..+..+ . +....+.......+.=+.+|+|++||+.++++.-.+
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred eeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 99999855555666666554332110 000000 0 000011122233333345899999999999987654
No 292
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.68 E-value=2.6e-17 Score=153.63 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=90.1
Q ss_pred eeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCceEEEEEC-----------------
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILD----------------- 137 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l---~~~G~i~~~l~----------------- 137 (221)
++.|++++|+..++++++||++++|++++|+||||||||||+++|+|++ |++|+| .++
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i--~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 2 EVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI--IYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred EEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEE--EEeccccccccccccccccc
Confidence 5678899998888999999999999999999999999999999999996 578998 565
Q ss_pred ------Ccccc--------------ccccccceeeccChHHHH--HHHHHHhcccc----eeeehhhhhcccccccchhh
Q 027590 138 ------GDNCR--------------HGLNRDLSFKAEDRVENI--RRIEKIEMPAV----QCCQKEISLRCSWMCHFKCV 191 (221)
Q Consensus 138 ------g~~~~--------------~~~~~~ig~v~q~~~~~~--~~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~ 191 (221)
|.++. ..+++.++|++|+....+ .++.+.+..+. ............+......
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl- 158 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL- 158 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-
Confidence 22221 013456999999731111 12222222110 0000000001111111111
Q ss_pred HHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 192 RQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
....++.+..+|+|++||+.++++...++
T Consensus 159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p 187 (520)
T TIGR03269 159 SHRITHIARDLSGGEKQRVVLARQLAKEP 187 (520)
T ss_pred hhhhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 12335567889999999999999876653
No 293
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.68 E-value=2.7e-17 Score=153.55 Aligned_cols=143 Identities=19% Similarity=0.131 Sum_probs=93.4
Q ss_pred cceeeeeeeEecC-----CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEEC-Ccc---ccc-
Q 027590 75 TVAKSTNILWHKN-----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD-GDN---CRH- 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~-----~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~-g~~---~~~- 143 (221)
++++++|+++.|+ ...+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++ |.+ +..
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i--~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV--NVRVGDEWVDMTKP 355 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EEecCCcccccccc
Confidence 3688889998884 256999999999999999999999999999999999999 588999 774 532 221
Q ss_pred ------cccccceeeccChHHHH-HHHHHHhccc--c-eeeehhhhhcccccccchhh----HHHHHHHHHHHhhhcchh
Q 027590 144 ------GLNRDLSFKAEDRVENI-RRIEKIEMPA--V-QCCQKEISLRCSWMCHFKCV----RQGTQRAFTSLHEKGRSR 209 (221)
Q Consensus 144 ------~~~~~ig~v~q~~~~~~-~~v~~~~~~g--~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 209 (221)
..++.+||++|++.... .++.+..... . ............+....... .+..++...+||.|++||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 23456999999853211 1333333221 0 00000000011111111111 123456788999999999
Q ss_pred HHHhhhhhcc
Q 027590 210 VLLGLMIHMN 219 (221)
Q Consensus 210 ~~~~~~~~~~ 219 (221)
+.++++...+
T Consensus 436 v~laral~~~ 445 (520)
T TIGR03269 436 VALAQVLIKE 445 (520)
T ss_pred HHHHHHHhcC
Confidence 9999987654
No 294
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.68 E-value=2.3e-17 Score=156.11 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=99.2
Q ss_pred ceeeeeeeEecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccc
Q 027590 76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~i 149 (221)
.++.+|++++|++ .++++++||++++|+.++|+||||||||||+++|+|++ |++|++ .++|.++.+ .+++.+
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i--~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI--LIDGIDINTVTRESLRKSI 411 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE--EECCEEhhhCCHHHHHhhe
Confidence 5788999999964 57899999999999999999999999999999999999 688999 899998764 467789
Q ss_pred eeeccChHHHHHHHHHHhcccceeee--hhhhhc-----cccc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 150 SFKAEDRVENIRRIEKIEMPAVQCCQ--KEISLR-----CSWM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 150 g~v~q~~~~~~~~v~~~~~~g~~~~~--~~~~~~-----~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+|++|++.-.-.++.+...++.-... ...... ..+. ...........+....+|+|++||+.++++...+
T Consensus 412 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 412 ATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999975433466666555421100 000000 0000 0000011122233446899999999999986554
No 295
>PLN03130 ABC transporter C family member; Provisional
Probab=99.68 E-value=1.2e-16 Score=165.26 Aligned_cols=144 Identities=14% Similarity=0.055 Sum_probs=100.0
Q ss_pred cceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
+.++.+|++++|.. .++|+++||+|++||.++|+|+||||||||+++|.|++ |++|+| .+||.++.+ .+++
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I--~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI--LIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceE--EECCEecccCCHHHHHh
Confidence 35889999999953 36999999999999999999999999999999999998 688999 899999875 6788
Q ss_pred cceeeccChHHHHHHHHHHhcccceee-ehhh---hhccc--c-cccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 148 DLSFKAEDRVENIRRIEKIEMPAVQCC-QKEI---SLRCS--W-MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~g~~~~-~~~~---~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
.|++|+|++.-.-.++.+....+.-.- .... +.... + ..........+.+.-..+|.|+||+..++++.-.+.
T Consensus 1314 ~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p 1393 (1622)
T PLN03130 1314 VLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393 (1622)
T ss_pred ccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 999999998544445555544422100 0000 00000 0 000001111122222468899999999999876543
No 296
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.67 E-value=8e-18 Score=129.83 Aligned_cols=120 Identities=21% Similarity=0.239 Sum_probs=79.8
Q ss_pred cccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccceeeccChHHHHH-HHHH
Q 027590 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVENIR-RIEK 165 (221)
Q Consensus 92 l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig~v~q~~~~~~~-~v~~ 165 (221)
|+++||++++|++++|+|+||||||||+++|+|.. +.+|.+ .++|.++.. ..++.++|++|+...... ++.+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSI--LINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEE--EETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 57999999999999999999999999999999999 578999 899999865 467889999998432211 1222
Q ss_pred HhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 166 IEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 166 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
...... +..+.. .............+....++.|+++|+.++++...+
T Consensus 79 ~~~~~~--~~~~l~----~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~ 126 (137)
T PF00005_consen 79 NESDER--IEEVLK----KLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKN 126 (137)
T ss_dssp HHHHHH--HHHHHH----HTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTT
T ss_pred cccccc--cccccc----ccccccccccccccccchhhHHHHHHHHHHHHHHcC
Confidence 200000 000000 000000011112222378999999999999876554
No 297
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.67 E-value=2e-17 Score=153.68 Aligned_cols=142 Identities=17% Similarity=0.260 Sum_probs=94.7
Q ss_pred ceeeeeeeEec---CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc--cCceEEEEECCccccc-----cc
Q 027590 76 VAKSTNILWHK---NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WRGKLTYILDGDNCRH-----GL 145 (221)
Q Consensus 76 ~~~~~~~~~~~---~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~--~~G~i~~~l~g~~~~~-----~~ 145 (221)
+++++|+++.| +...+++++||++++||+++|+|+||||||||+++|+|+++ ++|++ .++|+++.. .+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i--~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNV--FINGKPVDIRNPAQAI 334 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEE--EECCEECCCCCHHHHH
Confidence 67888888887 34679999999999999999999999999999999999984 58999 889988742 23
Q ss_pred cccceeeccChHH--HHH--HHHHHhccccee-------eehh--hhhcccccccchhhHHHHHHHHHHHhhhcchhHHH
Q 027590 146 NRDLSFKAEDRVE--NIR--RIEKIEMPAVQC-------CQKE--ISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLL 212 (221)
Q Consensus 146 ~~~ig~v~q~~~~--~~~--~v~~~~~~g~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (221)
++.+||++|++.. .+. ++.+...++... .... ......+...........++....+|+|++||+.+
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 5679999999631 111 344433332100 0000 00001111111111112344567899999999999
Q ss_pred hhhhhcc
Q 027590 213 GLMIHMN 219 (221)
Q Consensus 213 ~~~~~~~ 219 (221)
+++...+
T Consensus 415 a~al~~~ 421 (500)
T TIGR02633 415 AKMLLTN 421 (500)
T ss_pred HHHHhhC
Confidence 9987654
No 298
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.67 E-value=6.3e-17 Score=152.14 Aligned_cols=137 Identities=16% Similarity=0.139 Sum_probs=94.4
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeec
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA 153 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~ 153 (221)
+++++.|+++.|+...+++++||++++|++++|+||||||||||+++|+|++ |++|+| .+++ ++ .|||++
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i--~~~~-~~------~i~~v~ 391 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI--KIGE-TV------KLAYVD 391 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE--EECC-ce------EEEEEe
Confidence 4688999999998888999999999999999999999999999999999998 688998 6643 22 589999
Q ss_pred cChHHHH--HHHHHHhccccee--eehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENI--RRIEKIEMPAVQC--CQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~--~~v~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++.... .++.+....+... ..........+...........++....+|.|+++|+.++++...++
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p 462 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGG 462 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCC
Confidence 9853111 1444444332110 00000000011111111122345667899999999999999876553
No 299
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.67 E-value=1.2e-16 Score=129.88 Aligned_cols=66 Identities=21% Similarity=0.114 Sum_probs=57.8
Q ss_pred eeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccCh
Q 027590 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (221)
Q Consensus 80 ~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~ 156 (221)
.|+++.|++..++++. |++++||+++|+||||||||||+++|+|++ |++|++ .++|.+ ++|++|+.
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~--------i~~~~q~~ 70 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND--EWDGIT--------PVYKPQYI 70 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEE--EECCEE--------EEEEcccC
Confidence 4677888888888884 999999999999999999999999999998 688999 788753 68888865
No 300
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.67 E-value=9.3e-17 Score=151.17 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=94.0
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeec
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA 153 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~ 153 (221)
.+++++|+++.|+...+++++||++++|++++|+|+||||||||+++|+|++ |++|+| .+++ ++ .+||++
T Consensus 323 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i--~~~~-~~------~i~~v~ 393 (556)
T PRK11819 323 KVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI--KIGE-TV------KLAYVD 393 (556)
T ss_pred eEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECC-ce------EEEEEe
Confidence 4788999999998888999999999999999999999999999999999998 688998 6643 22 489999
Q ss_pred cChHHHH--HHHHHHhccccee--eehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENI--RRIEKIEMPAVQC--CQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~--~~v~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++.... .++.+...++... ..........+............+....+|+|+++|+.++++...++
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p 464 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGG 464 (556)
T ss_pred CchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9862111 1444443332100 00000000011111112122345667899999999999999876543
No 301
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.66 E-value=5.9e-17 Score=159.84 Aligned_cols=147 Identities=17% Similarity=0.137 Sum_probs=110.3
Q ss_pred ccccceeeeeeeEecC---CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----
Q 027590 72 QNSTVAKSTNILWHKN---SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~~---~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---- 143 (221)
.++.-++.+|++|+|. +.++++++||++++|+.++|||||||||||+..+|.+++ |+.|.| .+||+++++
T Consensus 983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V--~IDg~dik~lnl~ 1060 (1228)
T KOG0055|consen 983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV--KIDGVDIKDLNLK 1060 (1228)
T ss_pred cceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE--EECCcccccCCHH
Confidence 3455688999999996 457999999999999999999999999999999999999 899999 899999986
Q ss_pred cccccceeeccChHHHHHHHHHHhccccee--eehhh-----hhccccc-ccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 144 GLNRDLSFKAEDRVENIRRIEKIEMPAVQC--CQKEI-----SLRCSWM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 144 ~~~~~ig~v~q~~~~~~~~v~~~~~~g~~~--~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
.++++||.|.|+|.-.-.++.|....|... ..... .+...+. +....-+..+-+.=.+|++|++||.+++++
T Consensus 1061 ~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1061 WLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred HHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 789999999999976666777777666211 10000 0000000 111112233344456899999999999999
Q ss_pred hhccC
Q 027590 216 IHMNH 220 (221)
Q Consensus 216 ~~~~~ 220 (221)
.-+++
T Consensus 1141 ilRnP 1145 (1228)
T KOG0055|consen 1141 ILRNP 1145 (1228)
T ss_pred HHcCC
Confidence 87765
No 302
>PLN03232 ABC transporter C family member; Provisional
Probab=99.66 E-value=1.5e-16 Score=163.95 Aligned_cols=143 Identities=13% Similarity=0.032 Sum_probs=97.8
Q ss_pred cceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
..++.+|++++|.. .++|+++||+|++||.++|+|+||||||||+++|.|++ |++|+| .+||.++.+ .+++
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I--~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI--MIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE--EECCEEhhhCCHHHHHh
Confidence 35788999999953 47999999999999999999999999999999999998 688999 999999875 6788
Q ss_pred cceeeccChHHHHHHHHHHhccccee-eehhhhhcc---c--c-cccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 148 DLSFKAEDRVENIRRIEKIEMPAVQC-CQKEISLRC---S--W-MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~g~~~-~~~~~~~~~---~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.|+||+|++.-.-.++.+....+.-. .....+... . + ..........+.+.-..+|+|+||+..++++.-.+
T Consensus 1311 ~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~ 1389 (1495)
T PLN03232 1311 VLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRR 1389 (1495)
T ss_pred hcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999743333455544432100 000000000 0 0 00000001111222236889999999999987554
No 303
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.66 E-value=3.1e-17 Score=132.61 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=61.9
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccceeeccChHH
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVE 158 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig~v~q~~~~ 158 (221)
...+++.|||+.++|+.++|+|.||||||||+|+|+|++ |++|+| +++|+.+.. -..+.|-++|||++.
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~i--l~n~~~L~~~Dy~~R~k~IRMiFQDpnt 98 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI--LINDHPLHFGDYSFRSKRIRMIFQDPNT 98 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceE--EECCccccccchHhhhhheeeeecCCcc
Confidence 457899999999999999999999999999999999999 688999 999998854 456789999998754
No 304
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.66 E-value=3.6e-17 Score=139.14 Aligned_cols=125 Identities=15% Similarity=0.145 Sum_probs=83.3
Q ss_pred ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc----cccccceeeccChHHHH-HHHHH
Q 027590 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVENI-RRIEK 165 (221)
Q Consensus 91 ~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~----~~~~~ig~v~q~~~~~~-~~v~~ 165 (221)
+++++||++++|++++|+|+||||||||+++|+|+++++|++ .++|+++.. .+++.++|++|++.... .++.+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i--~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSI--QFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEE--EECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 799999999999999999999999999999999999778999 889988753 23456899999853221 13333
Q ss_pred Hhcccceee--eh-hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 166 IEMPAVQCC--QK-EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 166 ~~~~g~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
....+.... .. .......+..... ..+..++....+|.|++||+.++++...
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALG-LDDKLGRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcC-CHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 333221000 00 0000011111111 1223455677889999999999997753
No 305
>PTZ00243 ABC transporter; Provisional
Probab=99.66 E-value=2.2e-16 Score=162.88 Aligned_cols=141 Identities=13% Similarity=0.072 Sum_probs=96.3
Q ss_pred ceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 76 ~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
-++.+|++++|.. ..+|+++||+|++||.++|+|+||||||||+++|.|++ |++|+| ++||.++.+ .+++.
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I--~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEI--RVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEEcccCCHHHHHhc
Confidence 5889999999954 35999999999999999999999999999999999999 688999 899999875 67899
Q ss_pred ceeeccChHHHHHHHHHHhcccc-eeee---hhhhhccc--c-cccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAV-QCCQ---KEISLRCS--W-MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~-~~~~---~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
|+|+||++.-.-.++.+...... .... .+...... + ..........+.+.-..+|.|+||+..++++.-.
T Consensus 1386 I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~ 1462 (1560)
T PTZ00243 1386 FSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK 1462 (1560)
T ss_pred ceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc
Confidence 99999997433334544443211 0000 00000000 0 0000000111111124689999999999997654
No 306
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=8e-17 Score=131.21 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=77.3
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECC-ccccc-----cccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG-DNCRH-----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g-~~~~~-----~~~~ 147 (221)
.++++.+++.+|+...+++++||++.+||+-+|+|||||||||++..|+|.. |+.|++ +|+| .++.+ ..+.
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v--~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEV--LFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceE--EEcCchhhccCCHHHHHHh
Confidence 4688999999999999999999999999999999999999999999999998 677999 8998 67764 2445
Q ss_pred cceeeccChHHHHH-HHHHHhcc
Q 027590 148 DLSFKAEDRVENIR-RIEKIEMP 169 (221)
Q Consensus 148 ~ig~v~q~~~~~~~-~v~~~~~~ 169 (221)
.||--||.|.-... +|.+...+
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLel 104 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLEL 104 (249)
T ss_pred ccCccccCCeehhhccHHHHHHH
Confidence 67888898754443 45555444
No 307
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3.1e-16 Score=124.23 Aligned_cols=82 Identities=24% Similarity=0.367 Sum_probs=67.1
Q ss_pred eeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccceeec
Q 027590 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLSFKA 153 (221)
Q Consensus 79 ~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig~v~ 153 (221)
+.++.+.|....+++++||++++|++++|+|+||||||||+++|+|++ +..|++ +++|.++.. ...+.++|++
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i--~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI--LIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE--EECCEEcccCCHHHHHhceEEEe
Confidence 356777787678999999999999999999999999999999999999 578999 899987653 3456799999
Q ss_pred cChHHHHHH
Q 027590 154 EDRVENIRR 162 (221)
Q Consensus 154 q~~~~~~~~ 162 (221)
|-..-+.++
T Consensus 80 qlS~G~~~r 88 (157)
T cd00267 80 QLSGGQRQR 88 (157)
T ss_pred eCCHHHHHH
Confidence 854333333
No 308
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.66 E-value=7e-17 Score=135.86 Aligned_cols=124 Identities=19% Similarity=0.138 Sum_probs=80.8
Q ss_pred cccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccChHHHHH-HHHHHhcc
Q 027590 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR-RIEKIEMP 169 (221)
Q Consensus 92 l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~-~v~~~~~~ 169 (221)
++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++... ....+|++|++..... ++.+...+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGV--ILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEECCCC-ChhheEEecCcccCCCCCHHHHHHH
Confidence 47899999999999999999999999999999998 588999 8899887542 2235899998632211 33333222
Q ss_pred cc---ee-e--ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 170 AV---QC-C--QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 170 g~---~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+. .. . .........+...... .+..++...++|.|++||+.++++...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~~qrv~la~al~~~ 132 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGL-TEAADKRPGQLSGGMKQRVAIARALSIR 132 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCC-HHHHcCChhhCCHHHHHHHHHHHHHHcC
Confidence 10 00 0 0000000111111111 2334556788999999999999987654
No 309
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.65 E-value=1.9e-16 Score=133.04 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=82.4
Q ss_pred ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-c----cCceEEEEECCccccc--cccccceeeccChHHHH---
Q 027590 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H----WRGKLTYILDGDNCRH--GLNRDLSFKAEDRVENI--- 160 (221)
Q Consensus 91 ~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~----~~G~i~~~l~g~~~~~--~~~~~ig~v~q~~~~~~--- 160 (221)
+++++||++++|++++|+||||||||||+++|+|++ | ++|++ .++|+++.. ..++.++|++|++...+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i--~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI--LLDGRPLLPLSIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE--EECCEechhhhhhhheeEEEecCchhhcCcc
Confidence 478999999999999999999999999999999998 5 68999 899988754 22357999999974211
Q ss_pred HHHHHHhcc-----cceeeehhhhhcccccccchhh--HHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 161 RRIEKIEMP-----AVQCCQKEISLRCSWMCHFKCV--RQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 161 ~~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
..+.+.+.. +... ................. ....++....+|.|++||+.++++...+.
T Consensus 79 ~t~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 144 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLS-KQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEP 144 (230)
T ss_pred cCHHHHHHHHHHHcCccH-HHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 122222111 1100 00000000000011111 12345567789999999999999876553
No 310
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.6e-16 Score=151.82 Aligned_cols=134 Identities=18% Similarity=0.148 Sum_probs=92.4
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeec
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA 153 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~ 153 (221)
.++++.|+++.|+...+++++||++++|++++|+||||||||||+++|+|++ |++|+| .+++. ..+||++
T Consensus 311 ~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i--~~~~~-------~~igy~~ 381 (638)
T PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI--GLAKG-------IKLGYFA 381 (638)
T ss_pred ceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE--EECCC-------EEEEEec
Confidence 4788999999998888999999999999999999999999999999999998 688998 66531 2589999
Q ss_pred cChHHHHH---HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 154 EDRVENIR---RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 154 q~~~~~~~---~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|+....+. .+.+.... ..+.. .......+...+....+...+.+..||+|+++|+.++++...+
T Consensus 382 Q~~~~~l~~~~~~~~~~~~-~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 382 QHQLEFLRADESPLQHLAR-LAPQE-LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred CcchhhCCccchHHHHHHH-hCchh-hHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 97532211 22221110 00000 0000111111222223345667889999999999999987654
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.65 E-value=8.6e-17 Score=151.41 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=65.0
Q ss_pred cceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceee
Q 027590 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFK 152 (221)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v 152 (221)
++++++|+++.|+ ..++++++||++++|++++|+||||||||||+++|+|++ |++|++ .+++. ..+||+
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i--~~~~~-------~~i~~v 75 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA--RPAPG-------IKVGYL 75 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EecCC-------CEEEEE
Confidence 4688999999998 788999999999999999999999999999999999998 688998 66542 358999
Q ss_pred ccCh
Q 027590 153 AEDR 156 (221)
Q Consensus 153 ~q~~ 156 (221)
+|++
T Consensus 76 ~Q~~ 79 (556)
T PRK11819 76 PQEP 79 (556)
T ss_pred ecCC
Confidence 9985
No 312
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=4.8e-16 Score=134.58 Aligned_cols=130 Identities=19% Similarity=0.151 Sum_probs=91.8
Q ss_pred CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--------cccccceeeccChH
Q 027590 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------GLNRDLSFKAEDRV 157 (221)
Q Consensus 87 ~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------~~~~~ig~v~q~~~ 157 (221)
+.+.-++++||+++.||+++|+|.||||||||+|++++++ |++|+| +++|.++.. ..++++++|||+-.
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~i--lv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEI--LVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceE--EECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 3455678999999999999999999999999999999999 789999 899999864 35577999999754
Q ss_pred HHH-HHHHHHhcccceee----ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 158 ENI-RRIEKIEMPAVQCC----QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 158 ~~~-~~v~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
..- ++|.+.+..|.-.- ....+....|... .......++...+||+||+||+-++++...+
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~-VgL~~~~~~yp~eLSGGMqQRVGLARAla~~ 182 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKAEREERALEALEL-VGLEGYADKYPNELSGGMQQRVGLARALAND 182 (386)
T ss_pred cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHH-cCchhhhhcCcccccchHHHHHHHHHHHccC
Confidence 332 36666666643211 1111111112111 1122334455678899999999999987754
No 313
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.65 E-value=4.2e-16 Score=159.97 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=79.1
Q ss_pred ceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEE-CCccccc----ccc
Q 027590 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYIL-DGDNCRH----GLN 146 (221)
Q Consensus 76 ~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l-~g~~~~~----~~~ 146 (221)
-++.+|++++|+. .++++++||++++|++++|+||||||||||+++|+|++ |++|+| ++ +|.++.. .++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I--~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI--IINDSHNLKDINLKWWR 459 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeE--EEeCCcchhhCCHHHHH
Confidence 4788999999974 36999999999999999999999999999999999998 788999 88 5677653 467
Q ss_pred ccceeeccChHHHHHHHHHHhcccc
Q 027590 147 RDLSFKAEDRVENIRRIEKIEMPAV 171 (221)
Q Consensus 147 ~~ig~v~q~~~~~~~~v~~~~~~g~ 171 (221)
+.||||+|++...-.++.+...+|.
T Consensus 460 ~~Ig~V~Q~~~LF~~TI~eNI~~g~ 484 (1466)
T PTZ00265 460 SKIGVVSQDPLLFSNSIKNNIKYSL 484 (1466)
T ss_pred HhccEecccccchhccHHHHHHhcC
Confidence 8899999997544457777776653
No 314
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.64 E-value=5.2e-16 Score=160.12 Aligned_cols=143 Identities=16% Similarity=0.049 Sum_probs=97.9
Q ss_pred cceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
+.++.+|++++|.. ..+|+++||+|++||.++|+|+||||||||+++|.|++ |++|+| .+||.|+.+ .+++
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I--~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI--IIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeE--EECCEEccccCHHHHHh
Confidence 45888999999964 46999999999999999999999999999999999999 688999 999999975 6789
Q ss_pred cceeeccChHHHHHHHHHHhcc-cceeeehhhhhcc---cc---cccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 148 DLSFKAEDRVENIRRIEKIEMP-AVQCCQKEISLRC---SW---MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~-g~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.|++++|++--.-.++.+.... +...-....+... .+ ..........+.+.-..+|+|+||+..++++.-.+
T Consensus 1361 ~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1361 KITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred cCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 9999999974333344444331 1110000000000 00 00000011111122245888999999999987654
No 315
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.64 E-value=2.3e-16 Score=132.28 Aligned_cols=137 Identities=14% Similarity=0.026 Sum_probs=87.4
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccC
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~ 155 (221)
+.+.+++.+|+..++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.++.. .....+|.+..
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i--~~~g~~~~~-~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV--TVRGRVSSL-LGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEEchh-hcccccCCCCC
Confidence 55677788899999999999999999999999999999999999999998 688999 889987532 11223333321
Q ss_pred -hHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 156 -RVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 156 -~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
..+++......... .. ............... ..+..++.+..+|.|+++|+.++++...++
T Consensus 100 tv~enl~~~~~~~~~--~~-~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~~qrv~laral~~~p 161 (224)
T cd03220 100 TGRENIYLNGRLLGL--SR-KEIDEKIDEIIEFSE-LGDFIDLPVKTYSSGMKARLAFAIATALEP 161 (224)
T ss_pred cHHHHHHHHHHHcCC--CH-HHHHHHHHHHHHHcC-ChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 22333221111100 00 000000000000101 123345567889999999999999876553
No 316
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=3.8e-16 Score=131.01 Aligned_cols=128 Identities=17% Similarity=0.124 Sum_probs=89.5
Q ss_pred cCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccCh-HHHHHHH
Q 027590 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDR-VENIRRI 163 (221)
Q Consensus 86 ~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~-~~~~~~v 163 (221)
+....+|+||||++++||.++|+|+||||||||+|+|+|.+ |++|++ ..+|+-. ..+.-.+||-++-. .+|+...
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v--~v~G~v~-~li~lg~Gf~pelTGreNi~l~ 113 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV--KVTGKVA-PLIELGAGFDPELTGRENIYLR 113 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceE--EEcceEe-hhhhcccCCCcccchHHHHHHH
Confidence 35678999999999999999999999999999999999999 688999 7777643 23333456665543 4555555
Q ss_pred HHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 164 EKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+-+..+...-+....+. ...+....+-.++.++.+|.||++|++++.+.+.++
T Consensus 114 ~~~~G~~~~ei~~~~~e----IieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~p 166 (249)
T COG1134 114 GLILGLTRKEIDEKVDE----IIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEP 166 (249)
T ss_pred HHHhCccHHHHHHHHHH----HHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCC
Confidence 44443322211111110 112344455667778899999999999999887654
No 317
>PLN03211 ABC transporter G-25; Provisional
Probab=99.64 E-value=2.8e-16 Score=150.47 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=66.7
Q ss_pred eeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-cc--CceEEEEECCccccccccccceeeccC
Q 027590 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW--RGKLTYILDGDNCRHGLNRDLSFKAED 155 (221)
Q Consensus 79 ~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~--~G~i~~~l~g~~~~~~~~~~ig~v~q~ 155 (221)
..++++.|+++.+++++|+++++||+++|+||||||||||+++|+|++ +. +|+| .++|+++.....+.+||++|+
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I--~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTI--LANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE--EECCEECchhhccceEEECcc
Confidence 445666788888999999999999999999999999999999999998 43 7999 899998765555679999998
Q ss_pred hH
Q 027590 156 RV 157 (221)
Q Consensus 156 ~~ 157 (221)
..
T Consensus 149 ~~ 150 (659)
T PLN03211 149 DI 150 (659)
T ss_pred cc
Confidence 63
No 318
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.63 E-value=4.6e-16 Score=135.06 Aligned_cols=135 Identities=19% Similarity=0.110 Sum_probs=86.8
Q ss_pred ccccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccce
Q 027590 72 QNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLS 150 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig 150 (221)
+..+.++++++++. ...+++++||++++|++++|+|+||||||||+++|+|++ |.+|++ .++| .++
T Consensus 35 ~~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I--~i~g---------~i~ 101 (282)
T cd03291 35 SDDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI--KHSG---------RIS 101 (282)
T ss_pred CCCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECC---------EEE
Confidence 33456788888864 457999999999999999999999999999999999998 578998 7777 389
Q ss_pred eeccChHHHHHHHHHHhcccceeee-hhhhhcccccccch-------hhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 151 FKAEDRVENIRRIEKIEMPAVQCCQ-KEISLRCSWMCHFK-------CVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 151 ~v~q~~~~~~~~v~~~~~~g~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++|++...-..+.+....+..... ......... .... .......+....++.|+++|+.++++...++
T Consensus 102 yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p 178 (282)
T cd03291 102 FSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKAC-QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDA 178 (282)
T ss_pred EEeCcccccccCHHHHhhcccccCHHHHHHHHHHh-CCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999864222244444333211000 000000000 0000 0000111123578999999999999876654
No 319
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.8e-16 Score=147.04 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=66.2
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~i 149 (221)
+++++|+++.+ ..+++++||++++||+++|+|+||||||||+++|+|++ |++|+| .++|+++.. .+++.+
T Consensus 250 ~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTI--TLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEE--EECCEECCCCCHHHHHHCCC
Confidence 57777877653 46899999999999999999999999999999999999 688999 889988753 134569
Q ss_pred eeeccChH
Q 027590 150 SFKAEDRV 157 (221)
Q Consensus 150 g~v~q~~~ 157 (221)
+|++|++.
T Consensus 326 ~~~~q~~~ 333 (491)
T PRK10982 326 ALVTEERR 333 (491)
T ss_pred EEcCCchh
Confidence 99999864
No 320
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.63 E-value=8.3e-16 Score=160.12 Aligned_cols=142 Identities=9% Similarity=0.042 Sum_probs=98.4
Q ss_pred ccceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccc
Q 027590 74 STVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNR 147 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~ 147 (221)
..+++++|+++.|+. +.+++++||++++||+++|+|+||||||||+|+|+|++ |++|++ .++|.++.. ..++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I--~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA--TVAGKSILTNISDVHQ 2012 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE--EECCEECcchHHHHhh
Confidence 347889999999975 57999999999999999999999999999999999998 688999 899988853 3456
Q ss_pred cceeeccChHHHHH-HHHHHhc----c-cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 148 DLSFKAEDRVENIR-RIEKIEM----P-AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 148 ~ig~v~q~~~~~~~-~v~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.|||++|+....-. ++.+... + |. +..........+..... ..+..++....+|+|+|||+.++++...+
T Consensus 2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~-~~~~~~~~v~~lLe~lg-L~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGV-PAEEIEKVANWSIQSLG-LSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred hEEEEeccccCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcC-CHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 79999997421110 2222211 1 11 10000000011111111 12345667889999999999999876543
No 321
>PLN03073 ABC transporter F family; Provisional
Probab=99.63 E-value=3e-16 Score=151.44 Aligned_cols=133 Identities=12% Similarity=0.062 Sum_probs=90.1
Q ss_pred cceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceee
Q 027590 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFK 152 (221)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v 152 (221)
+++++.++++.|+ ...+++++||++++|++++|+||||||||||+++|+|++ |++|++ .+++. ..|||+
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I--~~~~~-------~~igyv 577 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV--FRSAK-------VRMAVF 577 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE--EECCc-------eeEEEE
Confidence 4688999999995 456999999999999999999999999999999999998 688998 66542 358999
Q ss_pred ccChHHHHH---H-HHHHhc-ccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENIR---R-IEKIEM-PAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~~---~-v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|+...... . +..... ..... ......+...+........+....||+|++||+.++++...+.
T Consensus 578 ~Q~~~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p 646 (718)
T PLN03073 578 SQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 646 (718)
T ss_pred eccccccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCC
Confidence 997522110 1 111110 00000 0001111111222222345567889999999999999876654
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.63 E-value=2.3e-16 Score=148.33 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=64.1
Q ss_pred ceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeec
Q 027590 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA 153 (221)
Q Consensus 76 ~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~ 153 (221)
++++.|+++.|+ ..++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .+++ ...|||++
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i--~~~~-------~~~i~~v~ 74 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA--RPAP-------GIKVGYLP 74 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EecC-------CCEEEEEe
Confidence 577889999997 678999999999999999999999999999999999998 688998 6664 23589999
Q ss_pred cCh
Q 027590 154 EDR 156 (221)
Q Consensus 154 q~~ 156 (221)
|++
T Consensus 75 Q~~ 77 (552)
T TIGR03719 75 QEP 77 (552)
T ss_pred ccC
Confidence 986
No 323
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.62 E-value=2.1e-16 Score=147.00 Aligned_cols=137 Identities=19% Similarity=0.243 Sum_probs=90.2
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~i 149 (221)
+++++|++. .+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|+++.. ..++.+
T Consensus 257 ~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I--~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV--TLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE--EECCEECCCCCHHHHHHCCC
Confidence 456666652 4799999999999999999999999999999999998 688999 889987743 234579
Q ss_pred eeeccChH--HHH--HHHHHHhccccee--------ee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 150 SFKAEDRV--ENI--RRIEKIEMPAVQC--------CQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 150 g~v~q~~~--~~~--~~v~~~~~~g~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
||++|++. ... .++.+...++... .. ........+...........++....+|+|++||+.++++
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~a 409 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARG 409 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 99999863 111 1344433322100 00 0000011111111111112455678899999999999998
Q ss_pred hhcc
Q 027590 216 IHMN 219 (221)
Q Consensus 216 ~~~~ 219 (221)
...+
T Consensus 410 l~~~ 413 (501)
T PRK10762 410 LMTR 413 (501)
T ss_pred HhhC
Confidence 7654
No 324
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=6.4e-16 Score=147.67 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=57.0
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~ 139 (221)
++.+.|++++|+...+++++||++++|++++|+||||||||||+|+|+|++ |++|+| .++|.
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I--~~~~~ 63 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY--TFPGN 63 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EecCC
Confidence 367889999999989999999999999999999999999999999999998 688999 77764
No 325
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.62 E-value=1.1e-15 Score=157.39 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=77.2
Q ss_pred cceeeeeeeEecC--CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc----ccccc
Q 027590 75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~--~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
+.++.+|++++|. ...+|+++||+|++||.++|+|+||||||||+++|.|+++++|+| ++||.++.+ .+++.
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I--~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEI--QIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEE--EECCEEcccCCHHHHHhc
Confidence 3578899999995 357999999999999999999999999999999999999888999 899999875 57889
Q ss_pred ceeeccChHHHHHHHHHHh
Q 027590 149 LSFKAEDRVENIRRIEKIE 167 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~ 167 (221)
|+|+||++--.-.++.+..
T Consensus 1294 is~IpQdp~LF~GTIR~NL 1312 (1490)
T TIGR01271 1294 FGVIPQKVFIFSGTFRKNL 1312 (1490)
T ss_pred eEEEeCCCccCccCHHHHh
Confidence 9999999743333444433
No 326
>PRK13409 putative ATPase RIL; Provisional
Probab=99.62 E-value=3.3e-16 Score=148.32 Aligned_cols=132 Identities=15% Similarity=0.134 Sum_probs=91.7
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeec
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA 153 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~ 153 (221)
.++++.++++.|++. .++++||++++||+++|+||||||||||+|+|+|++ |++|++ .++ ..++|++
T Consensus 339 ~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I--~~~---------~~i~y~~ 406 (590)
T PRK13409 339 TLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV--DPE---------LKISYKP 406 (590)
T ss_pred eEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EEe---------eeEEEec
Confidence 468888999889765 489999999999999999999999999999999999 688998 554 1589999
Q ss_pred cChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++..... ++.+.+..+...... ......+...... .+..++....||+|++||+.++++...+.
T Consensus 407 Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~L~~l~l-~~~~~~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 407 QYIKPDYDGTVEDLLRSITDDLGS-SYYKSEIIKPLQL-ERLLDKNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred ccccCCCCCcHHHHHHHHhhhcCh-HHHHHHHHHHCCC-HHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 98642221 344433321100000 0000111212222 24567778899999999999999877653
No 327
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.3e-16 Score=146.64 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=90.5
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~i 149 (221)
++++.+++. ..+++++||++++|++++|+||||||||||+++|+|++ |++|+| .++|+++.. ..+..+
T Consensus 257 ~l~~~~~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i--~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKG----PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV--YLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEecccc----CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE--EECCEECCCCCHHHHHhCCC
Confidence 456666652 25899999999999999999999999999999999998 588999 889987642 234679
Q ss_pred eeeccChHH--HH--HHHHHHhcccceee--------eh--hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 150 SFKAEDRVE--NI--RRIEKIEMPAVQCC--------QK--EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 150 g~v~q~~~~--~~--~~v~~~~~~g~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
+|++|++.. .+ .++.+....+.... .. .......+........+..++.+..+|+|++||+.++++
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~a 410 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRW 410 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHH
Confidence 999998741 11 13444433321100 00 000011111111111122355567889999999999998
Q ss_pred hhcc
Q 027590 216 IHMN 219 (221)
Q Consensus 216 ~~~~ 219 (221)
...+
T Consensus 411 l~~~ 414 (501)
T PRK11288 411 LSED 414 (501)
T ss_pred HccC
Confidence 7654
No 328
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.2e-15 Score=127.03 Aligned_cols=81 Identities=22% Similarity=0.257 Sum_probs=70.6
Q ss_pred ceeeeeeeEecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCceEEEEECCccccc-----ccc
Q 027590 76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILDGDNCRH-----GLN 146 (221)
Q Consensus 76 ~~~~~~~~~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l---~~~G~i~~~l~g~~~~~-----~~~ 146 (221)
++++.|++..-.+ +.+|+++||+|++||+.+|+||||||||||+++|+|.- .++|+| +|+|+++.. ..+
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I--~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI--LFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceE--EECCcccccCCHhHHHh
Confidence 5788899887777 49999999999999999999999999999999999985 378999 999999976 234
Q ss_pred ccceeeccChHH
Q 027590 147 RDLSFKAEDRVE 158 (221)
Q Consensus 147 ~~ig~v~q~~~~ 158 (221)
.-|...||.|.+
T Consensus 81 ~GifLafQ~P~e 92 (251)
T COG0396 81 AGIFLAFQYPVE 92 (251)
T ss_pred cCCEEeecCCcc
Confidence 567888999854
No 329
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.61 E-value=5e-16 Score=161.76 Aligned_cols=141 Identities=10% Similarity=0.080 Sum_probs=98.1
Q ss_pred cceeeeeeeEecC--CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---ccccc
Q 027590 75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~--~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ 148 (221)
..++++|+++.|+ .+.+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|.++.. ..++.
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I--~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV--LVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEE--EECCEECcchHHHHhhc
Confidence 4688999999994 568999999999999999999999999999999999998 688999 889998854 34567
Q ss_pred ceeeccChHHHHH-HHHHHhcc-----cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 149 LSFKAEDRVENIR-RIEKIEMP-----AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+||++|+...... ++.+...+ |. ...........+...... .+..++....+|+|++||+.++++...+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~-~~~~~~~~v~~lL~~vgL-~~~~~~~~~~LSGGqKQRLsLArALi~~ 1079 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGR-SWEEAQLEMEAMLEDTGL-HHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCC-chhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999998521111 22222221 11 000000001111111111 2345666789999999999999987654
No 330
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.9e-16 Score=141.58 Aligned_cols=138 Identities=19% Similarity=0.114 Sum_probs=98.9
Q ss_pred ceeeeeeeEecCCc--cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 76 VAKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 76 ~~~~~~~~~~~~~~--~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
.++.+|++|+|.+. ++++++||++.+||-++|+|+||||||||+++|+|.+ |++|+| .++|.++.+ .+++.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i--~~~g~~~~~l~~~~~~e~ 413 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI--TLNGVEIASLDEQALRET 413 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCee--eECCcChhhCChhhHHHH
Confidence 68899999999644 6999999999999999999999999999999999998 688999 899988865 36678
Q ss_pred ceeeccChHHHHHHHHHHhcccceeeehhhhhcccc---------cccchhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSW---------MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
|+++.|...-.-.++.+..+++.-... -.+..... ....+.......+.=+.+|+|+++|..++++.
T Consensus 414 i~vl~Qr~hlF~~Tlr~NL~lA~~~As-DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~L 489 (573)
T COG4987 414 ISVLTQRVHLFSGTLRDNLRLANPDAS-DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARAL 489 (573)
T ss_pred HhhhccchHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHH
Confidence 999999876666677777666332110 00000000 00001112223333456788999999998854
No 331
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.59 E-value=7.7e-16 Score=131.12 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=77.3
Q ss_pred ccccccceeEee-----CCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccChHHHH-H
Q 027590 89 VDKRDRQQLLQQ-----KGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI-R 161 (221)
Q Consensus 89 ~~~l~~vsl~i~-----~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~-~ 161 (221)
...+++++|++. +||+++|+|+||||||||+++|+|++ |++|++ .++|. .++|++|++.... .
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i--~~~g~--------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI--EIELD--------TVSYKPQYIKADYEG 76 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeE--EECCc--------eEEEecccccCCCCC
Confidence 346677777776 79999999999999999999999998 688998 78875 4789988754221 1
Q ss_pred HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 162 RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 162 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++.+..................+...... ....++....+|.|++||+.++++...++
T Consensus 77 tv~e~l~~~~~~~~~~~~~~~~~l~~l~l-~~~~~~~~~~LSgGe~qrv~iaraL~~~p 134 (246)
T cd03237 77 TVRDLLSSITKDFYTHPYFKTEIAKPLQI-EQILDREVPELSGGELQRVAIAACLSKDA 134 (246)
T ss_pred CHHHHHHHHhhhccccHHHHHHHHHHcCC-HHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 33333221100000000000011111111 23345667899999999999999876653
No 332
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.2e-15 Score=121.91 Aligned_cols=131 Identities=16% Similarity=0.183 Sum_probs=88.5
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccccc---ccceee
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLN---RDLSFK 152 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~---~~ig~v 152 (221)
+..++++...++.+++.++||++.+||++.|.||||||||||+|+|+|++ |++|++ +++|.++..... ..+-|.
T Consensus 3 L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v--~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred chhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeE--EecCCCCccchhhHHHHHHHh
Confidence 45667777778889999999999999999999999999999999999999 788999 899988765221 333333
Q ss_pred ccC--------hHHHHHHHHHHhcc-cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhh
Q 027590 153 AED--------RVENIRRIEKIEMP-AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIH 217 (221)
Q Consensus 153 ~q~--------~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (221)
.-. ..||+++..++... +...+..+.. . .......+-.+..+|.|++.|++++++.-
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~-------~-vgL~g~~dlp~~~LSAGQqRRvAlArL~l 146 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALA-------Q-VGLAGLEDLPVGQLSAGQQRRVALARLWL 146 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHH-------H-cCcccccccchhhcchhHHHHHHHHHHHc
Confidence 221 24555544444332 1111111111 0 01112223446788999999999998653
No 333
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.59 E-value=8.7e-16 Score=131.49 Aligned_cols=137 Identities=17% Similarity=0.104 Sum_probs=83.4
Q ss_pred eeeeEecCCc-cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEE---------EECCcccccc----
Q 027590 80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTY---------ILDGDNCRHG---- 144 (221)
Q Consensus 80 ~~~~~~~~~~-~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~---------~l~g~~~~~~---- 144 (221)
.+++++|+.. .+++++| .+++|++++|+||||||||||+++|+|++ |++|++.+ .++|.++.+.
T Consensus 4 ~~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 3567778654 5999999 49999999999999999999999999999 68899820 1678776431
Q ss_pred cc--ccceeeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 145 LN--RDLSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 145 ~~--~~ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.+ ..++|++|+....-..+.+.+.... ...........+...... .+..++....++.|++|++.++++...+
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELL-KKKDERGKLDELVDQLEL-RHVLDRNIDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHh-chhHHHHHHHHHHHHcCC-chhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 11 2367877764332212211111100 000000000001101111 1223455678999999999999987654
No 334
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.59 E-value=2.5e-15 Score=133.74 Aligned_cols=144 Identities=14% Similarity=0.137 Sum_probs=100.3
Q ss_pred ccceeeeeeeEecC----CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcccc------CceEEEEECCccccc
Q 027590 74 STVAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW------RGKLTYILDGDNCRH 143 (221)
Q Consensus 74 ~~~~~~~~~~~~~~----~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~------~G~i~~~l~g~~~~~ 143 (221)
.+++.++|++..|. .+.+++++||++++||+++|+|+||||||..++.+++++|. +|+| .|+|+++..
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i--~f~G~dll~ 81 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI--LFDGEDLLA 81 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee--EEcChhhhc
Confidence 45788888887775 67899999999999999999999999999999999999964 4788 899999854
Q ss_pred --------cccccceeeccCh------HHHHH-HHHHHhcccce-eeehhhhhccccccc--chhhHHHHHHHHHHHhhh
Q 027590 144 --------GLNRDLSFKAEDR------VENIR-RIEKIEMPAVQ-CCQKEISLRCSWMCH--FKCVRQGTQRAFTSLHEK 205 (221)
Q Consensus 144 --------~~~~~ig~v~q~~------~~~~~-~v~~~~~~g~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 205 (221)
-...+|+++||+| -..+. .++|......- .-..+......++.. ........++.--++|+|
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG 161 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG 161 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence 2446899999975 33333 56666655211 111111111111111 112233444555678999
Q ss_pred cchhHHHhhhhhcc
Q 027590 206 GRSRVLLGLMIHMN 219 (221)
Q Consensus 206 ~~~~~~~~~~~~~~ 219 (221)
+|||++++.+..-+
T Consensus 162 qRQRVMIAMALan~ 175 (534)
T COG4172 162 QRQRVMIAMALANE 175 (534)
T ss_pred hhhHHHHHHHHcCC
Confidence 99999999876543
No 335
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.58 E-value=3.6e-15 Score=118.59 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=65.8
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccc--cc--------cc
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC--RH--------GL 145 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~--~~--------~~ 145 (221)
+++.++.+.||...+|-|++|+.+.|+.++++||||+|||||+|.|+-+. |.+|+. .+.|... .+ .+
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l--~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL--NIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred eEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeE--EecccccccccCccHHHHHHH
Confidence 46778888999999999999999999999999999999999999999887 889998 5555433 21 46
Q ss_pred cccceeeccCh
Q 027590 146 NRDLSFKAEDR 156 (221)
Q Consensus 146 ~~~ig~v~q~~ 156 (221)
++++|+|||.-
T Consensus 81 r~~vgmvfqqy 91 (242)
T COG4161 81 RRNVGMVFQQY 91 (242)
T ss_pred HHhhhhhhhhh
Confidence 77888888864
No 336
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.58 E-value=1.5e-15 Score=141.70 Aligned_cols=137 Identities=17% Similarity=0.205 Sum_probs=88.0
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc-----ccccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG-----LNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~-----~~~~i 149 (221)
+++++|++. .+++++||++++|++++|+||||||||||+++|+|++ |++|++ .++|+++... .+..+
T Consensus 268 ~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i--~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI--MLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEE--EECCEECCCCCHHHHHhCCc
Confidence 566777662 2699999999999999999999999999999999998 588999 8899877531 24579
Q ss_pred eeeccChHH--HH--HHHHHHhcc---cceee--eh--hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 150 SFKAEDRVE--NI--RRIEKIEMP---AVQCC--QK--EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 150 g~v~q~~~~--~~--~~v~~~~~~---g~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
+|++|++.. .. .++.+.... ..... .. .......+...........++.+..+|+|++||+.++++...
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~ 420 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEA 420 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhh
Confidence 999998521 11 122222111 00000 00 000001111111111122455678899999999999998765
Q ss_pred c
Q 027590 219 N 219 (221)
Q Consensus 219 ~ 219 (221)
+
T Consensus 421 ~ 421 (510)
T PRK15439 421 S 421 (510)
T ss_pred C
Confidence 4
No 337
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.58 E-value=1.7e-15 Score=145.03 Aligned_cols=143 Identities=15% Similarity=0.079 Sum_probs=94.8
Q ss_pred cceeeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----c-
Q 027590 75 TVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----G- 144 (221)
Q Consensus 75 ~~~~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~- 144 (221)
.+++++|++++|+. ..+++++||++++||+++|+|+||||||||+++|+|++ |++|++ .++|+++.. .
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i--~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY--RVAGQDVATLDADAL 80 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE--EECCEEcCcCCHHHH
Confidence 36788899988853 46999999999999999999999999999999999999 588999 899998764 1
Q ss_pred ---ccccceeeccChHHHHH-HHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 145 ---LNRDLSFKAEDRVENIR-RIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 145 ---~~~~ig~v~q~~~~~~~-~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
.++.++|++|++..... ++.+....... ...........+..... ..+..+.....++.|++||+.++++.
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lg-l~~~~~~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLG-LEDRVEYQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-ChhhhcCCcccCCHHHHHHHHHHHHH
Confidence 24679999998632111 22322221100 00000000000000011 11233445567888999999999987
Q ss_pred hccC
Q 027590 217 HMNH 220 (221)
Q Consensus 217 ~~~~ 220 (221)
..++
T Consensus 160 ~~~P 163 (648)
T PRK10535 160 MNGG 163 (648)
T ss_pred hcCC
Confidence 6553
No 338
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.57 E-value=7.6e-15 Score=122.30 Aligned_cols=119 Identities=17% Similarity=0.088 Sum_probs=73.9
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEE-ECCccccccccccceeecc-ChHHHHHHHHHH
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYI-LDGDNCRHGLNRDLSFKAE-DRVENIRRIEKI 166 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~-l~g~~~~~~~~~~ig~v~q-~~~~~~~~v~~~ 166 (221)
++++++||++++|++++|+||||||||||+++|+|++ |++|++ . +++..+.-. ....+.+. ...+++......
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i--~~~~~~~~~~~--~~~~l~~~ltv~enl~~~~~~ 76 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF--IGLRGDALPLG--ANSFILPGLTGEENARMMASL 76 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE--EEecCceeccc--cccccCCcCcHHHHHHHHHHH
Confidence 4689999999999999999999999999999999998 688998 5 676544211 11111111 223444432222
Q ss_pred hcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 167 EMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 167 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.... ...... ...... ......+.....++.|+++|+.++++...+
T Consensus 77 ~~~~---~~~~~~---~~~~~~-~l~~~~~~~~~~lS~G~~qrv~la~al~~~ 122 (213)
T PRK15177 77 YGLD---GDEFSH---FCYQLT-QLEQCYTDRVSEYSVTMKTHLAFAINLLLP 122 (213)
T ss_pred cCCC---HHHHHH---HHHHHh-ChhHHhhchHhhcCHHHHHHHHHHHHHhcC
Confidence 1110 000000 000000 112234567889999999999999987654
No 339
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.57 E-value=8.4e-15 Score=140.48 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=64.1
Q ss_pred cceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccccccccccceee
Q 027590 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSFK 152 (221)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~~~~~~ig~v 152 (221)
+.++.+|+++.|. +..+++++||++++||+++|+||||||||||+++|+|+++ ++|++ .+++ ++.++|+
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i--~~~~-------~~~i~~v 520 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRL--TKPA-------KGKLFYV 520 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE--eecC-------CCcEEEE
Confidence 4688999999884 5579999999999999999999999999999999999985 67988 5553 4569999
Q ss_pred ccChH
Q 027590 153 AEDRV 157 (221)
Q Consensus 153 ~q~~~ 157 (221)
+|++.
T Consensus 521 ~Q~~~ 525 (659)
T TIGR00954 521 PQRPY 525 (659)
T ss_pred CCCCC
Confidence 99963
No 340
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.56 E-value=4.3e-15 Score=118.05 Aligned_cols=93 Identities=51% Similarity=0.741 Sum_probs=75.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccChHHHHHHHHHHhcc----cceeeeh
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKIEMP----AVQCCQK 176 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~~~~~----g~~~~~~ 176 (221)
+|.++||+|.||||||||++.|...|...|..+|++||+++++.+..+++|..+++.++++++++++.+ |.+++.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 578999999999999999999999998788888899999999999999999999999999999999988 8898888
Q ss_pred hhhhcccccccchhhHHHHHHHHH
Q 027590 177 EISLRCSWMCHFKCVRQGTQRAFT 200 (221)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~ 200 (221)
+.+ ++...++.+++.+.
T Consensus 81 ~is-------p~~~~R~~~R~~~~ 97 (156)
T PF01583_consen 81 FIS-------PYREDREWARELIP 97 (156)
T ss_dssp -----------SHHHHHHHHHHHH
T ss_pred ecc-------CchHHHHHHHHhCC
Confidence 775 55555666655554
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.56 E-value=4.5e-15 Score=141.83 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=57.0
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~ 139 (221)
++++.|++++|+..++++++||++++|++++|+||||||||||+|+|+|++ |++|+| .+++.
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I--~~~~~ 65 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI--IYEQD 65 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE--EeCCC
Confidence 577889999998888999999999999999999999999999999999998 688999 67764
No 342
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.56 E-value=5.6e-15 Score=151.34 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=68.9
Q ss_pred ceeeeeeeEecC----CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc----cCceEEEEECCccccccccc
Q 027590 76 VAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRHGLNR 147 (221)
Q Consensus 76 ~~~~~~~~~~~~----~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~----~~G~i~~~l~g~~~~~~~~~ 147 (221)
.++.+|+++.++ ...+|+++|+++++|++++|+||||||||||+++|+|+++ ++|++ .++|.++...+++
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I--~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDR--LVNGRPLDSSFQR 836 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE--EECCEECChhhhc
Confidence 467788887773 4579999999999999999999999999999999999984 45999 8999988666778
Q ss_pred cceeeccCh
Q 027590 148 DLSFKAEDR 156 (221)
Q Consensus 148 ~ig~v~q~~ 156 (221)
.+||++|+.
T Consensus 837 ~i~yv~Q~~ 845 (1394)
T TIGR00956 837 SIGYVQQQD 845 (1394)
T ss_pred ceeeecccc
Confidence 899999975
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=99.55 E-value=5.1e-15 Score=142.91 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=53.2
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc----cccCceEE
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA----LHWRGKLT 133 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~----l~~~G~i~ 133 (221)
.+++.|++++|+...+++++||++.+|++++|+|+||||||||+|+|+|. +|+.|+|.
T Consensus 177 ~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~ 238 (718)
T PLN03073 177 DIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL 238 (718)
T ss_pred eEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE
Confidence 68889999999888899999999999999999999999999999999985 46778884
No 344
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.53 E-value=4.1e-15 Score=124.56 Aligned_cols=119 Identities=17% Similarity=0.188 Sum_probs=75.9
Q ss_pred eEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccChHHH--H-HHHHHHhcccce
Q 027590 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN--I-RRIEKIEMPAVQ 172 (221)
Q Consensus 97 l~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~--~-~~v~~~~~~g~~ 172 (221)
|++++|++++|+|+||||||||+++|+|++ |++|++ .++|+++.. .++.++|++|++... . .++.+....+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i--~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTV--KVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCccchH-hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 568999999999999999999999999998 688999 899988643 346799999986421 1 123333222110
Q ss_pred ------eee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 173 ------CCQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 173 ------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
... ............... .+..+....+++.|+++|+.++++...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~laral~~~ 131 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGL-TELADRPVGELSGGQRQRVLVARALATR 131 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCC-chhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 000 000000000001111 1223445677899999999999877654
No 345
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.53 E-value=1.4e-14 Score=135.25 Aligned_cols=135 Identities=18% Similarity=0.181 Sum_probs=97.0
Q ss_pred ccceeeeeeeEecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccccccccee
Q 027590 74 STVAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~ 151 (221)
..++..+|++++|+. ..+++++||.+.+|+.++|+||||+|||||+|+|.|.+ |.+|.+ .+ |..+ .+||
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v--~~-g~~v------~igy 389 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV--KV-GETV------KIGY 389 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceE--Ee-CCce------EEEE
Confidence 447889999999965 58999999999999999999999999999999999998 678988 44 3334 4899
Q ss_pred eccChHHHHH--HHHHHhcccc--eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccCC
Q 027590 152 KAEDRVENIR--RIEKIEMPAV--QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNHH 221 (221)
Q Consensus 152 v~q~~~~~~~--~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (221)
..|+..+... ++.+...... ..-..+.. ....+....+.+.+.+..||+|+|.|+.++.+....+|
T Consensus 390 f~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~----~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pN 459 (530)
T COG0488 390 FDQHRDELDPDKTVLEELSEGFPDGDEQEVRA----YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPN 459 (530)
T ss_pred EEehhhhcCccCcHHHHHHhhCccccHHHHHH----HHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCC
Confidence 9998754321 3333332211 00111111 11223334566788899999999999999998766543
No 346
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6e-15 Score=131.80 Aligned_cols=139 Identities=19% Similarity=0.126 Sum_probs=98.7
Q ss_pred ceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccc
Q 027590 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~i 149 (221)
.....+++|.|. ..++++++||+++.|+.++|+|+||+||||++++|-+++ +.+|.| .+||++++. .+++-|
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I--~id~qdir~vtq~slR~aI 339 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI--TIDGQDIRDVTQQSLRRAI 339 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE--EEcchhHHHhHHHHHHHHh
Confidence 355678889895 678999999999999999999999999999999999999 689999 899999975 688899
Q ss_pred eeeccChHHHHHHHHHHhcccceeeehhhh--------hcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 150 SFKAEDRVENIRRIEKIEMPAVQCCQKEIS--------LRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 150 g~v~q~~~~~~~~v~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
|.||||.--+..++.+....|........- .-.......+.-...+.++--.+++|++||+++++..
T Consensus 340 g~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~i 414 (497)
T COG5265 340 GIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTI 414 (497)
T ss_pred CcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHH
Confidence 999999654445555544443322110000 0000011112223334444456788999999998864
No 347
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.52 E-value=5.9e-15 Score=121.92 Aligned_cols=68 Identities=24% Similarity=0.293 Sum_probs=61.2
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccceeeccChH
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLSFKAEDRV 157 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig~v~q~~~ 157 (221)
++++++++|++|.+|+|+.|+|.||||||||++.|+|-+ |++|+| .++|.++++ .....++-|||||.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I--~Idg~dVtk~~~~~RA~~larVfQdp~ 90 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI--LIDGVDVTKKSVAKRANLLARVFQDPL 90 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceE--EECceecccCCHHHHhhHHHHHhcchh
Confidence 568999999999999999999999999999999999999 699999 999999986 34456788999974
No 348
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.52 E-value=3.1e-14 Score=132.13 Aligned_cols=138 Identities=16% Similarity=0.197 Sum_probs=84.6
Q ss_pred cceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccce
Q 027590 75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLS 150 (221)
Q Consensus 75 ~~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig 150 (221)
+++++.|+++.|+. ..+++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.+..-. ...+
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI--~I~G~~~~i~--~~~~ 95 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV--DIKGSAALIA--ISSG 95 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEE--EECCEeeeEE--eccc
Confidence 36778888888865 46899999999999999999999999999999999998 688999 7888652110 0111
Q ss_pred eecc-ChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 151 FKAE-DRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 151 ~v~q-~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+.++ ...+++....... +. ...........+.... ...+..++....+|.|++||+.++++...++
T Consensus 96 l~~~lTV~EnL~l~~~~~--~~-~~~e~~e~i~elLe~l-gL~~~ld~~~~~LSGGQrQRVaLArAL~~~P 162 (549)
T PRK13545 96 LNGQLTGIENIELKGLMM--GL-TKEKIKEIIPEIIEFA-DIGKFIYQPVKTYSSGMKSRLGFAISVHINP 162 (549)
T ss_pred cCCCCcHHHHHHhhhhhc--CC-CHHHHHHHHHHHHHHc-CChhHhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 2121 1122221111000 10 0000000000000001 1122345567889999999999999876553
No 349
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.52 E-value=5.7e-15 Score=119.85 Aligned_cols=99 Identities=20% Similarity=0.135 Sum_probs=69.1
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccChHHHHHHHHHHh
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKIE 167 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~~~ 167 (221)
.+++++++||++++|++++|+||||||||||++++. +++|.+ .+++.. ....+..++|++| . . .+.
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il---~~~G~v--~~~~~~-~~~~~~~~~~~~q--~---~---~l~ 72 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---YASGKA--RLISFL-PKFSRNKLIFIDQ--L---Q---FLI 72 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh---hcCCcE--EECCcc-cccccccEEEEhH--H---H---HHH
Confidence 567899999999999999999999999999999884 468988 677652 2222345888887 1 1 111
Q ss_pred cccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 168 MPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 168 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.++.- .. ..++....++.|+++|+.++++...+
T Consensus 73 ~~~L~--------------~~-----~~~~~~~~LSgGq~qrl~laral~~~ 105 (176)
T cd03238 73 DVGLG--------------YL-----TLGQKLSTLSGGELQRVKLASELFSE 105 (176)
T ss_pred HcCCC--------------cc-----ccCCCcCcCCHHHHHHHHHHHHHhhC
Confidence 11110 00 01223468899999999998876654
No 350
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.52 E-value=1.6e-14 Score=134.80 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=63.6
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeecc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q 154 (221)
++.+.++++.|+..++++++||++.+|+.++|+|+||||||||+|+|+|.+ |++|+| ...+. -.++|+.|
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i--~~~~~-------~~v~~l~Q 73 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV--TRPKG-------LRVGYLSQ 73 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE--eecCC-------ceEEEeCC
Confidence 577889999999999999999999999999999999999999999999999 788998 44331 24788888
Q ss_pred ChH
Q 027590 155 DRV 157 (221)
Q Consensus 155 ~~~ 157 (221)
++.
T Consensus 74 ~~~ 76 (530)
T COG0488 74 EPP 76 (530)
T ss_pred CCC
Confidence 753
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.51 E-value=1.4e-14 Score=113.89 Aligned_cols=80 Identities=23% Similarity=0.235 Sum_probs=68.8
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-c---cCceEEEEECCccccc--cccccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-H---WRGKLTYILDGDNCRH--GLNRDL 149 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~---~~G~i~~~l~g~~~~~--~~~~~i 149 (221)
++.++|++.+.+..-.|-++||+|.+||++.|+||||||||||+.-+.|.+ + -+|++ .++++++.. .-++++
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~--~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL--WLNEQRLDMLPAAQRQI 79 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEE--EECCeeccccchhhhhe
Confidence 355677777777888899999999999999999999999999999999998 3 25998 899998875 456789
Q ss_pred eeeccChH
Q 027590 150 SFKAEDRV 157 (221)
Q Consensus 150 g~v~q~~~ 157 (221)
|+.|||+-
T Consensus 80 GiLFQD~l 87 (213)
T COG4136 80 GILFQDAL 87 (213)
T ss_pred eeeecccc
Confidence 99999963
No 352
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.51 E-value=2.5e-14 Score=136.33 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=64.1
Q ss_pred CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-c---CceEEEEECCccccc-cccccceeeccChHHHHH
Q 027590 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-W---RGKLTYILDGDNCRH-GLNRDLSFKAEDRVENIR 161 (221)
Q Consensus 87 ~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~---~G~i~~~l~g~~~~~-~~~~~ig~v~q~~~~~~~ 161 (221)
+.+++|+++|+++++||+++|+||||||||||+++|+|..+ . +|++ .++|.++.. .+++.+||++|+....-.
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i--~~~g~~~~~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSV--LLNGMPIDAKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE--EECCEECCHHHHhhhceeeccccccCcc
Confidence 45679999999999999999999999999999999999984 2 6888 899998753 466789999998643222
Q ss_pred -HHHHHh
Q 027590 162 -RIEKIE 167 (221)
Q Consensus 162 -~v~~~~ 167 (221)
++.|..
T Consensus 114 lTV~e~l 120 (617)
T TIGR00955 114 LTVREHL 120 (617)
T ss_pred CcHHHHH
Confidence 444443
No 353
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.51 E-value=1.2e-14 Score=123.68 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=53.5
Q ss_pred cCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccceeec
Q 027590 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDLSFKA 153 (221)
Q Consensus 86 ~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~v~ 153 (221)
+....++.|+||+|++|++++++|+|||||||++|+|+|++ |++|.+ .++|.+-.. ..-+++++|+
T Consensus 34 ~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v--~V~G~~Pf~~~~~~~~~~~~v~ 103 (325)
T COG4586 34 ERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV--RVNGKDPFRRREEYLRSIGLVM 103 (325)
T ss_pred hhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeE--EecCcCcchhHHHHHHHHHHHh
Confidence 34567999999999999999999999999999999999998 899999 788754321 2334455554
No 354
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.1e-13 Score=110.93 Aligned_cols=70 Identities=24% Similarity=0.234 Sum_probs=55.2
Q ss_pred eccccceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcc
Q 027590 71 CQNSTVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (221)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~ 140 (221)
+.++++.+.+-++...| ..++++++||+++.||++++-||||||||||+|+|-+-+ |++|+|.+.-.|.-
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~ 76 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEW 76 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcch
Confidence 34555555555554444 347999999999999999999999999999999999997 89999954444543
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.49 E-value=2.1e-14 Score=148.28 Aligned_cols=134 Identities=14% Similarity=0.110 Sum_probs=92.8
Q ss_pred ceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceee
Q 027590 76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFK 152 (221)
Q Consensus 76 ~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v 152 (221)
.++.+|+++.|+. .++++++||++++|++++|+||||||||||+++|+|++ |.+|++ .++| .|+|+
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i--~~~g---------~i~yv 704 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV--HMKG---------SVAYV 704 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEE--EECC---------EEEEE
Confidence 5788999999963 57999999999999999999999999999999999998 588999 7776 48999
Q ss_pred ccChHHHHHHHHHHhcccceeeehhhh-hcccc------cccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENIRRIEKIEMPAVQCCQKEIS-LRCSW------MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~~~v~~~~~~g~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|++.-.-.++.+....|.-.-...+. ..... ......+...+.+.-..+++|+|||+.++++...+.
T Consensus 705 ~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~ 779 (1522)
T TIGR00957 705 PQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 779 (1522)
T ss_pred cCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999754333666665554311000000 00000 000001111223334578999999999999887653
No 356
>PLN03130 ABC transporter C family member; Provisional
Probab=99.48 E-value=2.2e-14 Score=148.61 Aligned_cols=133 Identities=11% Similarity=0.027 Sum_probs=91.0
Q ss_pred ceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccC-ceEEEEECCccccccccccce
Q 027590 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWR-GKLTYILDGDNCRHGLNRDLS 150 (221)
Q Consensus 76 ~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~-G~i~~~l~g~~~~~~~~~~ig 150 (221)
.++.+|++++|+. .++|+++||++++|+.++|+||||||||||+++|.|.+ +.+ |++ .+ +..|+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I--~l---------~~~Ia 682 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV--VI---------RGTVA 682 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE--EE---------cCeEE
Confidence 4788899999963 56899999999999999999999999999999999999 578 888 43 44689
Q ss_pred eeccChHHHHHHHHHHhcccceeeehhhh-hccc------ccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIRRIEKIEMPAVQCCQKEIS-LRCS------WMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~~v~~~~~~g~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
||+|++.-.-.++.+...+|.-.....+. .... .......+...+.+.-..+|+|+|||+.++++...+
T Consensus 683 yv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 758 (1622)
T PLN03130 683 YVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1622)
T ss_pred EEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCC
Confidence 99999744434555544443211000000 0000 000111222333344456899999999999988765
No 357
>PLN03232 ABC transporter C family member; Provisional
Probab=99.48 E-value=2.7e-14 Score=147.39 Aligned_cols=134 Identities=12% Similarity=0.005 Sum_probs=91.5
Q ss_pred ceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccccccccee
Q 027590 76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (221)
Q Consensus 76 ~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~ 151 (221)
.++.+|++++|+. .++|+++||++++|+.++|+|+||||||||+++|.|.+ |.+|.+. .++..|+|
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----------~~~~~Iay 683 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----------VIRGSVAY 683 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----------EecCcEEE
Confidence 4778899999963 57899999999999999999999999999999999999 5677762 23457999
Q ss_pred eccChHHHHHHHHHHhcccceeeehhhh-hccc------ccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 152 KAEDRVENIRRIEKIEMPAVQCCQKEIS-LRCS------WMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 152 v~q~~~~~~~~v~~~~~~g~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|+|++.-.-.++.+...+|.-.-...+. .... .......+...+.+.-..+|+|+|||+.++++...+
T Consensus 684 v~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 758 (1495)
T PLN03232 684 VPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1495)
T ss_pred EcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcC
Confidence 9999855545666665554311000000 0000 000011112223333346899999999999988765
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=99.47 E-value=3.4e-14 Score=134.65 Aligned_cols=129 Identities=16% Similarity=0.045 Sum_probs=84.1
Q ss_pred eeEecCCc-cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEE-----------ECCcccccc----
Q 027590 82 ILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYI-----------LDGDNCRHG---- 144 (221)
Q Consensus 82 ~~~~~~~~-~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~-----------l~g~~~~~~---- 144 (221)
++++|+.. .+|++++ .+++|++++|+||||||||||+|+|+|++ |+.|++ . ++|.++.+.
T Consensus 79 ~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i--~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 79 PVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY--EEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred ceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc--cCCCcHHHHHHHhCChHHHHHHHHH
Confidence 67788764 5999999 89999999999999999999999999998 688998 5 788877531
Q ss_pred --ccccceeeccChHHHH----HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 145 --LNRDLSFKAEDRVENI----RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 145 --~~~~ig~v~q~~~~~~----~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
....+++.+|...... .++.+...... .......+...... ....++.+..||+|++||+.++.+...
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~-----~~~~~~~~l~~l~l-~~~~~~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD-----ERGKLDEVVERLGL-ENILDRDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh-----HHHHHHHHHHHcCC-chhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 1123555555432211 13333322100 00000001111111 123456678999999999999998765
Q ss_pred c
Q 027590 219 N 219 (221)
Q Consensus 219 ~ 219 (221)
+
T Consensus 230 ~ 230 (590)
T PRK13409 230 D 230 (590)
T ss_pred C
Confidence 4
No 359
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.47 E-value=2e-14 Score=123.59 Aligned_cols=50 Identities=34% Similarity=0.414 Sum_probs=46.0
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~ 139 (221)
..++++++||++++|++++|+|+||||||||+++|+|++ |++|++ .++|.
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I--~~~g~ 86 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV--DRNGE 86 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE--EECCE
Confidence 456899999999999999999999999999999999998 588998 77875
No 360
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=2.7e-14 Score=122.01 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=76.6
Q ss_pred cceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--------cccccceeeccChHHHHH-HH
Q 027590 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------GLNRDLSFKAEDRVENIR-RI 163 (221)
Q Consensus 94 ~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------~~~~~ig~v~q~~~~~~~-~v 163 (221)
+++|..+...+++|.|+||||||||+++|+|++ |+.|.| .++|+.+.+ .-+++|||||||.+-.-. +|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I--~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRI--ELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEE--EECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 677777777899999999999999999999999 899999 899987754 235789999999643221 22
Q ss_pred HHHhcccceeeeh-hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhh
Q 027590 164 EKIEMPAVQCCQK-EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIH 217 (221)
Q Consensus 164 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (221)
......|+-.... -+..+...+ .-....++.-..+|+|++||+++|++.-
T Consensus 94 rgNL~YG~~~~~~~~fd~iv~lL----GI~hLL~R~P~~LSGGEkQRVAIGRALL 144 (352)
T COG4148 94 RGNLRYGMWKSMRAQFDQLVALL----GIEHLLDRYPGTLSGGEKQRVAIGRALL 144 (352)
T ss_pred ecchhhhhcccchHhHHHHHHHh----CcHHHHhhCCCccCcchhhHHHHHHHHh
Confidence 2222222221100 000000000 0011233344578899999999999754
No 361
>PLN03140 ABC transporter G family member; Provisional
Probab=99.41 E-value=3.3e-13 Score=138.59 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=58.3
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc---cCceEEEEECCccccc-cccccceeeccCh
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKLTYILDGDNCRH-GLNRDLSFKAEDR 156 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~---~~G~i~~~l~g~~~~~-~~~~~ig~v~q~~ 156 (221)
...+|+++|+++++|++++|+||||||||||+++|+|+.+ .+|++ .++|.+... ..++.+||++|+.
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I--~inG~~~~~~~~~~~igyv~Q~d 962 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI--RISGFPKKQETFARISGYCEQND 962 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceE--EECCccCChHHhhhheEEEcccc
Confidence 3479999999999999999999999999999999999974 46998 889987753 3556799999985
No 362
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.41 E-value=1.5e-13 Score=141.88 Aligned_cols=120 Identities=18% Similarity=0.139 Sum_probs=80.3
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccChHHHHHHHHHHh
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKIE 167 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~~~ 167 (221)
.++++++||++++|++++|+||||||||||+++|.|++ |.+|++ .++| .|+|++|++.-.-.++.+..
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i--~~~g---------~iayv~Q~~~l~~~Ti~eNI 507 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI--KHSG---------RISFSPQTSWIMPGTIKDNI 507 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECC---------EEEEEeCCCccCCccHHHHH
Confidence 56899999999999999999999999999999999999 588999 7777 38999999743323555555
Q ss_pred cccceeeehhh-hhcccc------cccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 168 MPAVQCCQKEI-SLRCSW------MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 168 ~~g~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.+|.......+ .....+ ......+...+.+....+++|+|||+.++++...+
T Consensus 508 ~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~ 566 (1490)
T TIGR01271 508 IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKD 566 (1490)
T ss_pred HhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcC
Confidence 44421000000 000000 00000111112223356899999999999988765
No 363
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=99.39 E-value=1.6e-13 Score=120.65 Aligned_cols=91 Identities=46% Similarity=0.796 Sum_probs=81.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccChHHHHHHHHHHhcc----cceeee
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKIEMP----AVQCCQ 175 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~~~~~----g~~~~~ 175 (221)
-+|+.+|++|.||+||||+.-+|...+...|-..|.+||+++++++.+++||.++|+.++++++++++.+ |+++++
T Consensus 48 frgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvcit 127 (627)
T KOG4238|consen 48 FRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCIT 127 (627)
T ss_pred ccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceeee
Confidence 4799999999999999999999999987778888999999999999999999999999999999999988 999999
Q ss_pred hhhhhcccccccchhhHHHHHH
Q 027590 176 KEISLRCSWMCHFKCVRQGTQR 197 (221)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~ 197 (221)
++++ ++..++..+++
T Consensus 128 sfis-------pf~~dr~~ark 142 (627)
T KOG4238|consen 128 SFIS-------PFAKDRENARK 142 (627)
T ss_pred hhcC-------hhhhhhhhhhh
Confidence 8876 66666665444
No 364
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.39 E-value=4.5e-13 Score=137.45 Aligned_cols=67 Identities=24% Similarity=0.268 Sum_probs=58.5
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-----ccCceEEEEECCccccc---cccccceeeccCh
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-----HWRGKLTYILDGDNCRH---GLNRDLSFKAEDR 156 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-----~~~G~i~~~l~g~~~~~---~~~~~ig~v~q~~ 156 (221)
.+++|+++|+.+++||+++|+||||||||||+|+|+|++ +.+|+| .++|.++.+ ..++.++|++|+.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I--~~~G~~~~~~~~~~r~~i~yv~Q~d 147 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVI--TYDGITPEEIKKHYRGDVVYNAETD 147 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEE--EECCEehHHHHhhcCceeEEecccc
Confidence 467999999999999999999999999999999999985 367999 889988753 3456799999985
No 365
>PTZ00243 ABC transporter; Provisional
Probab=99.37 E-value=2.5e-13 Score=140.56 Aligned_cols=126 Identities=13% Similarity=0.058 Sum_probs=83.2
Q ss_pred EecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccChHHHHHH
Q 027590 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162 (221)
Q Consensus 84 ~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~ 162 (221)
+.++..++++++||++++|++++|+||||||||||+++|+|++ |++|++ .+. +.|+|++|++...-.+
T Consensus 668 ~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i--~~~---------~~i~yv~Q~~~l~~~T 736 (1560)
T PTZ00243 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--WAE---------RSIAYVPQQAWIMNAT 736 (1560)
T ss_pred cccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE--EEC---------CeEEEEeCCCccCCCc
Confidence 3445677999999999999999999999999999999999998 688998 542 4689999987432224
Q ss_pred HHHHhcccceeeehhh-hhcccc------cccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 163 IEKIEMPAVQCCQKEI-SLRCSW------MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 163 v~~~~~~g~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+.+....+.......+ ...... ..........+.+....|++|+|||+.++++...+.
T Consensus 737 v~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p 801 (1560)
T PTZ00243 737 VRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANR 801 (1560)
T ss_pred HHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 5554443211000000 000000 000011222334455678999999999999887653
No 366
>PLN03140 ABC transporter G family member; Provisional
Probab=99.36 E-value=1.6e-13 Score=140.89 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=59.2
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-cc---CceEEEEECCccccc-cccccceeeccCh
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW---RGKLTYILDGDNCRH-GLNRDLSFKAEDR 156 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~---~G~i~~~l~g~~~~~-~~~~~ig~v~q~~ 156 (221)
.+++|+++|+.+++|++++|+||||||||||+++|+|++ ++ +|+| .++|.++.+ ..++.++|++|+.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I--~~nG~~~~~~~~~~~i~yv~Q~d 248 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEI--TYNGYRLNEFVPRKTSAYISQND 248 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEE--EECCEechhhcccceeEEecccc
Confidence 467999999999999999999999999999999999998 55 7999 889998754 2356799999984
No 367
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.33 E-value=4.2e-12 Score=113.10 Aligned_cols=66 Identities=26% Similarity=0.359 Sum_probs=60.2
Q ss_pred ceeeeeeeEecCCc-cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc
Q 027590 76 VAKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH 143 (221)
Q Consensus 76 ~~~~~~~~~~~~~~-~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~ 143 (221)
-++.+|+.+.|..+ --+..||++|++||++-|+|.|||||||++++|.|+. |++|+| ++||.++..
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I--~ldg~pV~~ 389 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI--LLDGKPVSA 389 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce--eECCccCCC
Confidence 47788999999765 5688999999999999999999999999999999998 899999 999999864
No 368
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.33 E-value=1.6e-12 Score=96.98 Aligned_cols=72 Identities=22% Similarity=0.096 Sum_probs=56.7
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc----cccccceeeccChHHHHHHHH
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVENIRRIE 164 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~----~~~~~ig~v~q~~~~~~~~v~ 164 (221)
..++++++|++++|++++|+||||||||||++++. .|.+ .++|+++.. ...+.+++++|+ -...++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i--~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKH--RLVGDDNVEIREDSKDELIGRNPEL--GLEIRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeE--EEeeEeHHHhhhhhcCCEEEEechh--cchhhHH
Confidence 46899999999999999999999999999999986 7887 889998854 344556777777 2334666
Q ss_pred HHhcc
Q 027590 165 KIEMP 169 (221)
Q Consensus 165 ~~~~~ 169 (221)
+...+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 55554
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.33 E-value=6.4e-13 Score=109.60 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=70.4
Q ss_pred ccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccC-c---------eEEEEECCccccc-cccccceeeccChHHHHH
Q 027590 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-G---------KLTYILDGDNCRH-GLNRDLSFKAEDRVENIR 161 (221)
Q Consensus 93 ~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~-G---------~i~~~l~g~~~~~-~~~~~ig~v~q~~~~~~~ 161 (221)
+++++++++| +++|+||||||||||+++|++++++. | .+ .++|++... ...+.++|++|++..++
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~vfq~~~~~~- 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDV--IFAGSETRKPANFAEVTLTFDNSDGRY- 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHH--hccCCCCCCCCceEEEEEEEEcCCCce-
Confidence 5789999999 99999999999999999999998432 2 34 455665532 33567999999986551
Q ss_pred HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhh
Q 027590 162 RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIH 217 (221)
Q Consensus 162 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (221)
+........+ +... ....++....++.|+++++.++++..
T Consensus 90 --------~~~~~~~~~~----~l~~----~~~~~~~~~~LS~G~kqrl~la~~l~ 129 (197)
T cd03278 90 --------SIISQGDVSE----IIEA----PGKKVQRLSLLSGGEKALTALALLFA 129 (197)
T ss_pred --------eEEehhhHHH----HHhC----CCccccchhhcCHHHHHHHHHHHHHH
Confidence 0000000000 0001 11234557889999999999998753
No 370
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.32 E-value=2.1e-12 Score=127.50 Aligned_cols=137 Identities=11% Similarity=0.127 Sum_probs=96.8
Q ss_pred cceeeeeeeEecCCcc-ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccc
Q 027590 75 TVAKSTNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~-~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~ 147 (221)
..+...++...|+... |++++|+.+++||++++.|+|||||||+++++.|.. |++|++ +++|.++.. ...+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a--~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEA--LIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceE--EEecCccccccchhhhhh
Confidence 3577788888887666 999999999999999999999999999999999998 688999 789998864 2667
Q ss_pred cceeeccCh--------HHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhh
Q 027590 148 DLSFKAEDR--------VENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIH 217 (221)
Q Consensus 148 ~ig~v~q~~--------~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (221)
.+||.||.. +|+...++.+-.+...-+....+ +....-.....+...+..+++|+++|..+|.+.-
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~----~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aiali 714 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIE----KLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALI 714 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHH----HHHHHcCChhhhccchhhCCCcchhhHHHHHHHh
Confidence 899999973 34444333332221111111111 1101112233444557888999999999887653
No 371
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.32 E-value=3.1e-12 Score=129.03 Aligned_cols=80 Identities=21% Similarity=0.249 Sum_probs=72.7
Q ss_pred cceeeeeeeEecCCc--cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~--~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
+-++.+|++.+|... .+|+++||+|++||-++|+|+.|||||||+.+|-++. |.+|+| .+||.|+.+ .+|+
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I--~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEI--LIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeE--EEcCeecccccHHHHHh
Confidence 357778888888644 7999999999999999999999999999999999998 588999 899999986 6899
Q ss_pred cceeeccCh
Q 027590 148 DLSFKAEDR 156 (221)
Q Consensus 148 ~ig~v~q~~ 156 (221)
+++.+||||
T Consensus 1215 rlsIIPQdP 1223 (1381)
T KOG0054|consen 1215 RLSIIPQDP 1223 (1381)
T ss_pred cCeeeCCCC
Confidence 999999997
No 372
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.31 E-value=4.7e-13 Score=118.33 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=69.8
Q ss_pred EEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeeccChHHHHH-HHHHHhcccce----eeehhh
Q 027590 107 ITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKAEDRVENIR-RIEKIEMPAVQ----CCQKEI 178 (221)
Q Consensus 107 i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~q~~~~~~~-~v~~~~~~g~~----~~~~~~ 178 (221)
|+||||||||||+++|+|++ |++|+| .++|+++.. ...+.++|++|+...... ++.+...++.. ......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I--~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSI--MLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEE--EECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 68999999999999999999 688999 899988754 235679999998643222 44444433210 000000
Q ss_pred hhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 179 SLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
.....+...... ....++...++|.|++||+.++++...+.
T Consensus 79 ~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qRvalaraL~~~p 119 (325)
T TIGR01187 79 PRVLEALRLVQL-EEFADRKPHQLSGGQQQRVALARALVFKP 119 (325)
T ss_pred HHHHHHHHHcCC-cchhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 000111111111 12234556789999999999999876543
No 373
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.30 E-value=9.6e-12 Score=114.98 Aligned_cols=130 Identities=21% Similarity=0.133 Sum_probs=94.3
Q ss_pred ccceeeeeeeEecC--CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccccccccccce
Q 027590 74 STVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLS 150 (221)
Q Consensus 74 ~~~~~~~~~~~~~~--~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~~~~~~ig 150 (221)
++.++.++++..-. ...+++++||.|.+|+.+.|+||||||||+|+|.+.|+.| ..|+++...+|.+ +++-
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~------~~lf 504 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP------KDLF 504 (659)
T ss_pred cceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC------CceE
Confidence 46788888887653 4467889999999999999999999999999999999998 7899876566622 2345
Q ss_pred eeccCh--------------------------HHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhh
Q 027590 151 FKAEDR--------------------------VENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHE 204 (221)
Q Consensus 151 ~v~q~~--------------------------~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 204 (221)
|+||.| ++.+.++-+.++++.+. ++.. .-+.+...+..+.|+.
T Consensus 505 flPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~-----~r~g------gld~~~~~dW~dvLS~ 573 (659)
T KOG0060|consen 505 FLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL-----EREG------GLDQQVDWDWMDVLSP 573 (659)
T ss_pred EecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH-----HHhC------CCCchhhccHHhhcCH
Confidence 556543 44455666666664431 1111 2223345667889999
Q ss_pred hcchhHHHhhhhhccC
Q 027590 205 KGRSRVLLGLMIHMNH 220 (221)
Q Consensus 205 ~~~~~~~~~~~~~~~~ 220 (221)
|++||..++++-..++
T Consensus 574 GEqQRLa~ARLfy~kP 589 (659)
T KOG0060|consen 574 GEQQRLAFARLFYHKP 589 (659)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999876554
No 374
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.29 E-value=4.9e-12 Score=104.14 Aligned_cols=92 Identities=52% Similarity=0.766 Sum_probs=69.0
Q ss_pred CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccChHHHHHHHHHH
Q 027590 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKI 166 (221)
Q Consensus 87 ~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~~ 166 (221)
+..+.-+......++|++++|+|+||||||||++.|++.+...|..+++++|+++...+...++|++|++.++++++.++
T Consensus 9 ~~v~~~~~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (198)
T PRK03846 9 HPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEV 88 (198)
T ss_pred CCCCHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHH
Confidence 33333444445568999999999999999999999999885444322389999988766667899999999988877665
Q ss_pred hcc----cceeeehhh
Q 027590 167 EMP----AVQCCQKEI 178 (221)
Q Consensus 167 ~~~----g~~~~~~~~ 178 (221)
+.. |.+++.++.
T Consensus 89 a~~~~~~G~~VI~~~~ 104 (198)
T PRK03846 89 AKLMVDAGLVVLTAFI 104 (198)
T ss_pred HHHHhhCCCEEEEEeC
Confidence 554 777665443
No 375
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.28 E-value=4.2e-12 Score=120.93 Aligned_cols=67 Identities=25% Similarity=0.346 Sum_probs=59.2
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc----cCceEEEEECCcccc-ccccccceeeccCh
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCR-HGLNRDLSFKAEDR 156 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~----~~G~i~~~l~g~~~~-~~~~~~ig~v~q~~ 156 (221)
.+++|++||.++++||+.||+||||||||||+++|+|..+ .+|.| .+||+... +..++..|||.|+.
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~i--lvNG~~~~~~~~~~~s~yV~QdD 113 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEI--LLNGRPRDSRSFRKISGYVQQDD 113 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEE--EECCccCchhhhhheeEEEcccc
Confidence 4689999999999999999999999999999999999985 45998 89996554 46778899999984
No 376
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.25 E-value=1.5e-12 Score=104.89 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=55.4
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc----cccccceeeccC
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED 155 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~----~~~~~ig~v~q~ 155 (221)
+.+-.+|..+..||++=++||||||||||+..++|++|.+|+| .++|.++.. ++.+.-+|..|+
T Consensus 13 tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi--~~~G~~l~~~~~~eLArhRAYLsQq 80 (248)
T COG4138 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSI--QFAGQPLEAWSATELARHRAYLSQQ 80 (248)
T ss_pred ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceE--EECCcchhHHhHhHHHHHHHHHhhc
Confidence 4566788999999999999999999999999999999999999 899999865 556666776665
No 377
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.20 E-value=1.8e-11 Score=123.60 Aligned_cols=133 Identities=12% Similarity=0.086 Sum_probs=94.3
Q ss_pred ceeeeeeeEecC---CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCcccccccccccee
Q 027590 76 VAKSTNILWHKN---SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSF 151 (221)
Q Consensus 76 ~~~~~~~~~~~~---~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~~~~~~ig~ 151 (221)
.++..|.++.++ ..+.|+|+||++++|+.++|+|+-|||||+|+.+|.|-++ .+|++ .++|. ++|
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v--~v~gs---------iaY 586 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV--AVNGS---------VAY 586 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE--EEcCe---------EEE
Confidence 466667666554 3348999999999999999999999999999999999995 88998 77774 799
Q ss_pred eccChHHHHHHHHHHhcccceeeehhhh-hcccc------cccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 152 KAEDRVENIRRIEKIEMPAVQCCQKEIS-LRCSW------MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 152 v~q~~~~~~~~v~~~~~~g~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
++|.+.-+-.++.+..-.|.-.-...+. .+..+ ......|..++-++=..|++|||||+.+|+|.+++
T Consensus 587 v~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ 661 (1381)
T KOG0054|consen 587 VPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD 661 (1381)
T ss_pred eccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhcc
Confidence 9998755444555544443221111110 00000 11223455666677778999999999999998875
No 378
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.17 E-value=4.1e-11 Score=112.48 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=85.6
Q ss_pred ccceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCcccccccccccee
Q 027590 74 STVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSF 151 (221)
Q Consensus 74 ~~~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~~~~~~ig~ 151 (221)
...+..+|++..-. ..+.+++.+|.+++|+.+.|.|+||||||||+|+|+|+-| .+|+|.+ - ...++-|
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~--P-------~~~~~lf 460 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM--P-------ADSALLF 460 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceec--C-------CCCceEE
Confidence 34677888876553 4578999999999999999999999999999999999998 6798832 2 1223567
Q ss_pred eccChHHHHHHHHHHhcccce----eeehhhhhcccc-cccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 152 KAEDRVENIRRIEKIEMPAVQ----CCQKEISLRCSW-MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 152 v~q~~~~~~~~v~~~~~~g~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+||.|--...++.++...... ......+.+... +.+....-++..+.-+.|+.|++||++++++.-.+
T Consensus 461 lpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~k 533 (604)
T COG4178 461 LPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHK 533 (604)
T ss_pred ecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcC
Confidence 777654333344444333111 111111100000 00111112222335568899999999999976443
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.08 E-value=4.8e-11 Score=109.71 Aligned_cols=135 Identities=18% Similarity=0.162 Sum_probs=83.7
Q ss_pred ccceeeeeeeEecCCc-cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccccccccee
Q 027590 74 STVAKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~ 151 (221)
.+++...|++|+|.+. .++++++|-++.++.++++||||||||||+|++.|.+ |..|.+ ...-.+. +++
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~v--s~~~H~~-------~~~ 457 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMV--SRHSHNK-------LPR 457 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccc--ccccccc-------chh
Confidence 4578888999999755 6889999999999999999999999999999999999 788987 3322221 223
Q ss_pred eccChHHHHH---HHHHHhcc--cc-eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccCC
Q 027590 152 KAEDRVENIR---RIEKIEMP--AV-QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNHH 221 (221)
Q Consensus 152 v~q~~~~~~~---~v~~~~~~--g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (221)
--|+..+... ..-+...- .. -....... ....+....+.-...++++|.|+|.|+.|+.+.--.+|
T Consensus 458 y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~----ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 458 YNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRS----ILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred hhhhhHhhcCcchhHHHHHHHhccccchHHHHHH----HHHHhCCCccccccchhhcccccchhHHHHHHHhcCCc
Confidence 3333322221 00010000 00 00000000 00112222333445688999999999999987654443
No 380
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.08 E-value=1.4e-10 Score=94.14 Aligned_cols=89 Identities=53% Similarity=0.820 Sum_probs=67.7
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccChHHHHHHHHHHhcc
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKIEMP 169 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~~~~~ 169 (221)
+..++.+...++|++++|+|++||||||+++.|.+.++..|.-+++++++++++.+...++|..+++..+++.+.+++..
T Consensus 6 ~~~~~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
T TIGR00455 6 TKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKL 85 (184)
T ss_pred CHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHH
Confidence 33445556679999999999999999999999999986555322378999988777777889988888887766654443
Q ss_pred ----cceeeehhh
Q 027590 170 ----AVQCCQKEI 178 (221)
Q Consensus 170 ----g~~~~~~~~ 178 (221)
|..++....
T Consensus 86 ~~~~G~~VI~d~~ 98 (184)
T TIGR00455 86 FVRNGIIVITSFI 98 (184)
T ss_pred HHcCCCEEEEecC
Confidence 777665543
No 381
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.06 E-value=3.5e-10 Score=95.47 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=30.8
Q ss_pred ecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 85 ~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
+|++..++++++ |++++|+||||||||||+++|+++
T Consensus 11 sy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 11 SYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred CcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHH
Confidence 467777887775 789999999999999999999843
No 382
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.04 E-value=1.5e-10 Score=106.15 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=44.1
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCc-eEEEEECCccccc
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG-KLTYILDGDNCRH 143 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G-~i~~~l~g~~~~~ 143 (221)
.+|++||+++++||+++|+||||||||||++ +++. |++| ++ .++|.++..
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I--~ldg~~~~~ 71 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEF--FLDATHSFS 71 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEE--EECCEECCC
Confidence 6799999999999999999999999999999 5665 6776 68 899988754
No 383
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.96 E-value=1.8e-09 Score=86.82 Aligned_cols=76 Identities=43% Similarity=0.680 Sum_probs=58.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCc-eEEEEECCccccccccccceeeccChHHHHHHHHHHhcc----cceee
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKIEMP----AVQCC 174 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G-~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~~~~~----g~~~~ 174 (221)
++|++++|+|++||||||+++.|++.+...| .+ ++++++.+.+.+...++|..+++....+++..++.. |.+++
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v-~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi 80 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPV-EVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVL 80 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEE
Confidence 6899999999999999999999999996444 44 368998877666566788888888887776665554 55554
Q ss_pred eh
Q 027590 175 QK 176 (221)
Q Consensus 175 ~~ 176 (221)
..
T Consensus 81 ~~ 82 (175)
T PRK00889 81 VS 82 (175)
T ss_pred Ee
Confidence 43
No 384
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.93 E-value=2.6e-09 Score=98.40 Aligned_cols=125 Identities=15% Similarity=0.086 Sum_probs=74.7
Q ss_pred eeeeeeeEe-cCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccccccccccceeecc
Q 027590 77 AKSTNILWH-KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSFKAE 154 (221)
Q Consensus 77 ~~~~~~~~~-~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~~~~~~ig~v~q 154 (221)
+..+|+..- .....++..++|.|.+|--+.|+||||||||+|+|.|.|+.| ..|.. .. . ....+-|.||
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L--~~-P------~~~~mFYIPQ 552 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLL--SI-P------RPNNIFYIPQ 552 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCee--ec-C------CCcceEeccC
Confidence 444444422 223346789999999999999999999999999999999998 55654 11 1 1112444444
Q ss_pred Ch-----------------HHHHHH---HHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhh
Q 027590 155 DR-----------------VENIRR---IEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGL 214 (221)
Q Consensus 155 ~~-----------------~~~~~~---v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (221)
.| +++.++ =.++.++-.++... +...++.-.+.+.+.-+.+++|++||..+++
T Consensus 553 RPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~-------~i~qr~~g~da~~dWkd~LsgGekQR~~mAR 625 (728)
T KOG0064|consen 553 RPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLE-------HILQREGGWDAVRDWKDVLSGGEKQRMGMAR 625 (728)
T ss_pred CCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHH-------HHHHhccChhhhccHHhhccchHHHHHHHHH
Confidence 32 333221 11121111111000 0111222245566677889999999999998
Q ss_pred hhh
Q 027590 215 MIH 217 (221)
Q Consensus 215 ~~~ 217 (221)
+-.
T Consensus 626 m~y 628 (728)
T KOG0064|consen 626 MFY 628 (728)
T ss_pred HHh
Confidence 754
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.93 E-value=2.5e-09 Score=88.79 Aligned_cols=73 Identities=22% Similarity=0.206 Sum_probs=57.6
Q ss_pred cCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEE---EEECCccccc--------cccccceeecc
Q 027590 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT---YILDGDNCRH--------GLNRDLSFKAE 154 (221)
Q Consensus 86 ~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~---~~l~g~~~~~--------~~~~~ig~v~q 154 (221)
.|-++++|++|++..+||+-+++|+||||||-++|+|+|...++=.++ ..|++.++.+ ...++|+++||
T Consensus 17 qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQ 96 (330)
T COG4170 17 QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhc
Confidence 356789999999999999999999999999999999999876543332 2566655533 34567899999
Q ss_pred ChHH
Q 027590 155 DRVE 158 (221)
Q Consensus 155 ~~~~ 158 (221)
++..
T Consensus 97 eP~s 100 (330)
T COG4170 97 EPQS 100 (330)
T ss_pred Cchh
Confidence 8743
No 386
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.92 E-value=1.3e-09 Score=108.90 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=68.3
Q ss_pred ccceeeeeeeEec----CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc---cCceEEEEECCcccc-ccc
Q 027590 74 STVAKSTNILWHK----NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKLTYILDGDNCR-HGL 145 (221)
Q Consensus 74 ~~~~~~~~~~~~~----~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~---~~G~i~~~l~g~~~~-~~~ 145 (221)
.++....|+.+.- +.+++|++|+=-++||.+.+|+|+||||||||++.|+|... -+|.| +++|.+.. ..+
T Consensus 785 ~~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi--~i~G~p~~q~tF 862 (1391)
T KOG0065|consen 785 KDVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDI--LISGFPKDQETF 862 (1391)
T ss_pred cceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEE--EECCeeCchhhh
Confidence 3455555554322 45689999999999999999999999999999999999962 46888 99999998 578
Q ss_pred cccceeeccChHH
Q 027590 146 NRDLSFKAEDRVE 158 (221)
Q Consensus 146 ~~~ig~v~q~~~~ 158 (221)
++.+|||.|+..+
T Consensus 863 ~R~~GYvqQ~DiH 875 (1391)
T KOG0065|consen 863 ARVSGYVEQQDIH 875 (1391)
T ss_pred ccccceeeccccc
Confidence 9999999998644
No 387
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.91 E-value=1e-09 Score=92.28 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=31.5
Q ss_pred cCCccccccceeEeeCCcEEEEEcCCCCcHHHHH
Q 027590 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (221)
Q Consensus 86 ~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl 119 (221)
.....+++++||++++||+++|+|+||||||||+
T Consensus 5 ~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 5 GAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred cchhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 3467899999999999999999999999999996
No 388
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.91 E-value=1.4e-09 Score=100.41 Aligned_cols=134 Identities=21% Similarity=0.242 Sum_probs=88.4
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccccc-----ccccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH-----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~-----~~~~~ 148 (221)
+++++++++.. ..++++||++++||+++|.|.=|||+|-|+++|.|..+ .+|++ .++|+++.- ..+..
T Consensus 262 ~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i--~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 262 PVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEI--LLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred cEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceE--EECCEEccCCCHHHHHHcC
Confidence 35667766532 25789999999999999999999999999999999874 78999 999998753 45567
Q ss_pred ceeeccChHHHH----HHHHHHhcccceeeehhhhhcccccccchhhHHH--------------HHHHHHHHhhhcchhH
Q 027590 149 LSFKAEDRVENI----RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQG--------------TQRAFTSLHEKGRSRV 210 (221)
Q Consensus 149 ig~v~q~~~~~~----~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~ 210 (221)
|+|+++||...- ..+.+...+.. +......+.......++. .++.+..||+|.+||+
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~-----l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKV 410 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLAS-----LRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKV 410 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHh-----hhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhH
Confidence 999999974211 12333322210 000000000011111111 2245677888999999
Q ss_pred HHhhhhhcc
Q 027590 211 LLGLMIHMN 219 (221)
Q Consensus 211 ~~~~~~~~~ 219 (221)
.+|+....+
T Consensus 411 vlarwL~~~ 419 (500)
T COG1129 411 VLARWLATD 419 (500)
T ss_pred HHHHHHhcC
Confidence 999977654
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.87 E-value=3.5e-09 Score=97.59 Aligned_cols=56 Identities=23% Similarity=0.157 Sum_probs=50.9
Q ss_pred cccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-cc
Q 027590 73 NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW 128 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~ 128 (221)
++.-+++.++++.|..+..++++.|++.+|+-++|+|+|||||||++++|.+.. |.
T Consensus 72 ~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~ 128 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI 128 (614)
T ss_pred ccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC
Confidence 344578889999999999999999999999999999999999999999999997 53
No 390
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.86 E-value=9e-10 Score=91.62 Aligned_cols=129 Identities=15% Similarity=0.029 Sum_probs=68.8
Q ss_pred eeeeeeeEecCCccccccceeEee-CCcEEEEEcCCCCcHHHHHHHHHhcc--ccCceEEEEEC-Ccc-cc-ccccccce
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQ-KGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILD-GDN-CR-HGLNRDLS 150 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~-~Ge~i~i~G~sGsGKSTLl~~l~g~l--~~~G~i~~~l~-g~~-~~-~~~~~~ig 150 (221)
++++|+. .|... ..++|... +|++++|+|+||||||||+++|++.+ +..+.. ..+ ..+ +. ......|+
T Consensus 6 i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~--~~~~~~~~~~~~~~~~~v~ 79 (213)
T cd03279 6 LELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYG--RQENLRSVFAPGEDTAEVS 79 (213)
T ss_pred EEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccc--cchhHHHHhcCCCccEEEE
Confidence 4555655 44332 45566543 58999999999999999999999765 233433 221 111 11 13445688
Q ss_pred eeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 151 FKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 151 ~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
+++|+....+. +.+..-+....+.. .............++....++.|+++++.++++..+
T Consensus 80 ~~f~~~~~~~~----~~r~~gl~~~~~~~---~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 80 FTFQLGGKKYR----VERSRGLDYDQFTR---IVLLPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEECCeEEE----EEEecCCCHHHHHH---hhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 88887632110 00000000000000 000000111233345567889999999999887753
No 391
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.9e-09 Score=97.56 Aligned_cols=132 Identities=15% Similarity=0.072 Sum_probs=85.7
Q ss_pred ccceeeeeeeEec-CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccccccccee
Q 027590 74 STVAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (221)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~ 151 (221)
.+++-+.+++|.| +..+.+..++|-|.--..++|+||||.|||||+++|.|-+ |..|.. . ... +-+||+
T Consensus 584 PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~--R-Knh------rL~iG~ 654 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGEL--R-KNH------RLRIGW 654 (807)
T ss_pred CCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchh--h-ccc------eeeeec
Confidence 3588899999999 6778899999999999999999999999999999999999 787875 1 222 235888
Q ss_pred eccChHHHHH---HHHHHhcc-cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 152 KAEDRVENIR---RIEKIEMP-AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 152 v~q~~~~~~~---~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
.-|+..+.+. +-.++.+. =.+|...+..-+..+ ......-.-.+..|++|+++|+.++.+...
T Consensus 655 FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~f----GL~sHAHTikikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 655 FDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTF----GLASHAHTIKIKDLSGGQKARVALAELALG 721 (807)
T ss_pred hhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhh----hhhhccceEeeeecCCcchHHHHHHHHhcC
Confidence 8888777664 22222222 111111111100000 000000011245678899999999876543
No 392
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.80 E-value=3.3e-08 Score=90.65 Aligned_cols=78 Identities=24% Similarity=0.144 Sum_probs=60.4
Q ss_pred cceeeeeeeEec-CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEEC---Cccccc------
Q 027590 75 TVAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD---GDNCRH------ 143 (221)
Q Consensus 75 ~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~---g~~~~~------ 143 (221)
+.++..+++..| ....+++.++ .+.+|+.++|+|+||||||||+++|+++. ++.|.+ .+. |+++..
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv--~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVI--ALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeee--eecccCCccHHHHhHHHH
Confidence 356667777666 3567888885 89999999999999999999999999998 566765 554 555542
Q ss_pred --cccccceeeccC
Q 027590 144 --GLNRDLSFKAED 155 (221)
Q Consensus 144 --~~~~~ig~v~q~ 155 (221)
.+++.|+|++|.
T Consensus 215 ~~~r~rtI~vV~qs 228 (450)
T PRK06002 215 ADNLKKAVAVVATS 228 (450)
T ss_pred HHhhCCeEEEEEcC
Confidence 234679999996
No 393
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.78 E-value=3.8e-09 Score=96.47 Aligned_cols=82 Identities=22% Similarity=0.347 Sum_probs=69.8
Q ss_pred ccceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccc-cc-----cc
Q 027590 74 STVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC-RH-----GL 145 (221)
Q Consensus 74 ~~~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~-~~-----~~ 145 (221)
..++++++++.... ....+++|||+++.||+++|.|-+|-|.+.|+.+|+|+. +.+|+| .++|+++ .+ ..
T Consensus 255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I--~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRI--LLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceE--EECCEeccccCCHHHHH
Confidence 45788888887654 368899999999999999999999999999999999998 577999 9999997 21 34
Q ss_pred cccceeeccChH
Q 027590 146 NRDLSFKAEDRV 157 (221)
Q Consensus 146 ~~~ig~v~q~~~ 157 (221)
+..++|+|+||.
T Consensus 333 ~~G~~~VPedR~ 344 (501)
T COG3845 333 RLGLAYVPEDRH 344 (501)
T ss_pred hcCCccCChhhc
Confidence 567999999983
No 394
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.77 E-value=5.5e-09 Score=94.86 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=68.8
Q ss_pred ccccceeE-----eeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeeccChHHHHH-HH
Q 027590 91 KRDRQQLL-----QQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR-RI 163 (221)
Q Consensus 91 ~l~~vsl~-----i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~-~v 163 (221)
.+.+..|+ ++.||+++++||||-||||+.++|+|.+ |++|.. .++ +++|-||-...... +|
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~------~~~------~vSyKPQyI~~~~~gtV 418 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE------EDL------KVSYKPQYISPDYDGTV 418 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCC------ccc------eEeecceeecCCCCCcH
Confidence 34455554 4678999999999999999999999999 787751 111 35666764322111 33
Q ss_pred HHHhcc---cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 164 EKIEMP---AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 164 ~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
.++... ......-+...+ ..+. ......++.+..||+|+.||++++.+..++
T Consensus 419 ~~~l~~~~~~~~~~s~~~~ei---~~pl-~l~~i~e~~v~~LSGGELQRvaIaa~L~re 473 (591)
T COG1245 419 EDLLRSAIRSAFGSSYFKTEI---VKPL-NLEDLLERPVDELSGGELQRVAIAAALSRE 473 (591)
T ss_pred HHHHHHhhhhhcccchhHHhh---cCcc-chHHHHhcccccCCchhHHHHHHHHHhccc
Confidence 333222 101111111111 1122 224567788999999999999998876543
No 395
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.74 E-value=3.7e-09 Score=88.18 Aligned_cols=42 Identities=19% Similarity=0.068 Sum_probs=35.3
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
+++.|+. .|+...+++++++ ++++|+|||||||||++++|..
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~ 47 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF 47 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH
Confidence 4455554 6788889998887 8999999999999999999974
No 396
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.71 E-value=3e-08 Score=78.17 Aligned_cols=74 Identities=57% Similarity=0.895 Sum_probs=54.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccChHHHHHHHHHHhc----ccceeeehh
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKIEM----PAVQCCQKE 177 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~~~~----~g~~~~~~~ 177 (221)
+++|+|++|||||||++.|.+.+...|.-+++++++.++..+....+|.++++.+.++.+...+. .|..++...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~ 78 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAF 78 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEcc
Confidence 47899999999999999999998654532237899888876666778888888777766554333 366665543
No 397
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.70 E-value=6.9e-09 Score=93.40 Aligned_cols=52 Identities=23% Similarity=0.180 Sum_probs=44.0
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
+++.+++...-....+++++||++++|++++|+|.|||||||+++++.|...
T Consensus 383 IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~ 434 (593)
T COG2401 383 ILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK 434 (593)
T ss_pred HHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh
Confidence 5555555544456678999999999999999999999999999999999853
No 398
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.69 E-value=7.8e-09 Score=85.64 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=41.4
Q ss_pred cceeEeeCCcEEEEEcCCCCcHHHHHHHHH----hccc-cCceEEEEECCccccc-cccccceeeccCh
Q 027590 94 RQQLLQQKGCVIWITGLSGSGKSTLACALS----QALH-WRGKLTYILDGDNCRH-GLNRDLSFKAEDR 156 (221)
Q Consensus 94 ~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~----g~l~-~~G~i~~~l~g~~~~~-~~~~~ig~v~q~~ 156 (221)
..++++.+| +++|+||||||||||+++|. |..+ ..|.+ ..+.+.+.. .....+++++|++
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~--~~~~~~i~~~~~~~~v~~~f~~~ 80 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGG--AHDPKLIREGEVRAQVKLAFENA 80 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccc--cchHHHHhCCCCcEEEEEEEEeC
Confidence 344566677 99999999999999999995 6663 44554 222222222 3455788899887
No 399
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.66 E-value=5.8e-08 Score=91.92 Aligned_cols=78 Identities=40% Similarity=0.537 Sum_probs=61.0
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccccccccccceeeccChHHHHHHHHHHhc----cccee
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKIEM----PAVQC 173 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~~~~----~g~~~ 173 (221)
.++|++++|+|++||||||+++.|+..+. ..|..++++|++.+++.+..+.+|..+++..+.++++.++. .|..+
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~v 468 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIA 468 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 47899999999999999999999999995 36654458999988877777788988888888776664443 35555
Q ss_pred eeh
Q 027590 174 CQK 176 (221)
Q Consensus 174 ~~~ 176 (221)
+..
T Consensus 469 I~~ 471 (568)
T PRK05537 469 ICA 471 (568)
T ss_pred EEE
Confidence 544
No 400
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.65 E-value=4.4e-08 Score=84.25 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=31.7
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHH
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL 122 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l 122 (221)
...-|+++++.++.|.+++|+|.||||||||++.+
T Consensus 7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred chhcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 34568899999999999999999999999999865
No 401
>PF12558 DUF3744: ATP-binding cassette cobalt transporter; InterPro: IPR022216 This domain family is found in bacteria, and is approximately 70 amino acids in length. The family is found in association with PF00005 from PFAM. There is a conserved REP sequence motif. There is a single completely conserved residue P that may be functionally important. The proteins in this family are frequently annotated as ABC Cobalt transporters however there is little accompanying literature to confirm this. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Probab=98.64 E-value=3.4e-09 Score=74.05 Aligned_cols=68 Identities=12% Similarity=0.118 Sum_probs=51.3
Q ss_pred CCCCCCcCCccccceec----ceeeeeecCcccccccccccccccceeeeccccCCce--eccccceeeeeeeE
Q 027590 17 CSPSLAEVDFRTSVKMS----GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNL--CQNSTVAKSTNILW 84 (221)
Q Consensus 17 ~~~~L~~~girepl~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 84 (221)
+|++|.++|||||||++ ++|++.+..++.++..++.+.....+..|........ ....++++++|++|
T Consensus 1 ks~lL~~~GIREPLYitALk~ag~~l~~~~~l~~l~~l~~~~~~~~l~~w~~~~~~~~~~~~~~~LL~l~nlsf 74 (74)
T PF12558_consen 1 KSDLLEQNGIREPLYITALKYAGVDLTKEDHLSDLDNLDLSDVKEKLQQWQDKQPPPKEKQEKEPLLELENLSF 74 (74)
T ss_pred CcchHhhcCCCccHHHHHHHHcCCCcccCCCccCHHHCCcHHHHHHHHHHHhccCCcccCCCCCceeeecCCcC
Confidence 47899999999999999 7999999999999999988876666666654322221 23455777777653
No 402
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.61 E-value=7.8e-08 Score=77.97 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=32.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~ 143 (221)
+|++++|+|+||||||||+++|++++.. + .++|+++..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---~--~i~gd~~~~ 39 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA---K--FIDGDDLHP 39 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC---E--EECCcccCC
Confidence 5899999999999999999999999843 3 678888754
No 403
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.61 E-value=1.1e-07 Score=87.00 Aligned_cols=68 Identities=18% Similarity=0.080 Sum_probs=49.9
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEE-EEECCccccc----------cccccceeeccC
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLT-YILDGDNCRH----------GLNRDLSFKAED 155 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~-~~l~g~~~~~----------~~~~~ig~v~q~ 155 (221)
...+++++ |++.+|++++|+|+||||||||+++|++... +.+.+. +-.+++++.. ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 56799999 9999999999999999999999999999874 432221 1234444432 123358888888
Q ss_pred h
Q 027590 156 R 156 (221)
Q Consensus 156 ~ 156 (221)
.
T Consensus 221 ~ 221 (434)
T PRK07196 221 E 221 (434)
T ss_pred C
Confidence 4
No 404
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.60 E-value=7.7e-08 Score=79.68 Aligned_cols=63 Identities=21% Similarity=0.152 Sum_probs=53.4
Q ss_pred ceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcc
Q 027590 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (221)
Q Consensus 76 ~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~ 140 (221)
.+++.++.|.|. ..+++-|+|++++.|.-..++|.||||||||+|+|.|.. ...|.+ .+.|.+
T Consensus 13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v--~Vlgrs 77 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVV--QVLGRS 77 (291)
T ss_pred eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeE--EEcCcC
Confidence 577888999895 558999999999999999999999999999999999986 444666 556654
No 405
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.59 E-value=4.9e-08 Score=83.11 Aligned_cols=53 Identities=21% Similarity=0.120 Sum_probs=39.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc-c-CceEEEEECCc-cccc------cccccceeeccCh
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALH-W-RGKLTYILDGD-NCRH------GLNRDLSFKAEDR 156 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~-~-~G~i~~~l~g~-~~~~------~~~~~ig~v~q~~ 156 (221)
+.+++|+||||||||||+++|++++. . .|++ .+.+. ++.+ .....+++++|++
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~--r~~~~~~li~~~~~~~~~~~~v~~~fq~~ 86 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTV--RASNLQDLIYKRGQAGITKASVTIVFDNS 86 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccc--cccCHHHHhhcCCCCCCcEEEEEEEEEcC
Confidence 56899999999999999999999994 4 3565 55555 3321 1234788888875
No 406
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=5.7e-08 Score=89.25 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=44.2
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
+...+++..||.+.+|.+.++++..|.-++++|+||+|||||+|+|+.
T Consensus 81 i~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 455667778999999999999999999999999999999999999998
No 407
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.57 E-value=6e-08 Score=79.04 Aligned_cols=45 Identities=27% Similarity=0.222 Sum_probs=36.7
Q ss_pred ccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCc
Q 027590 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGD 139 (221)
Q Consensus 93 ~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~ 139 (221)
+=+.+.+++|+.++|+||||||||||+++|+++++ ..|.+ .+++.
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i--~ied~ 61 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERII--TIEDT 61 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEE--EECCc
Confidence 34456689999999999999999999999999996 55665 55543
No 408
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.54 E-value=1.3e-07 Score=90.66 Aligned_cols=90 Identities=48% Similarity=0.733 Sum_probs=67.5
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccChHHHHHHHHHHh
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKIE 167 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~~~ 167 (221)
........+..-+++.+++++|.+||||||+++.|...+...|..+++++++.++..+....+|..+++..+++++.+++
T Consensus 446 ~~~~~~~~~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a 525 (632)
T PRK05506 446 DVSREARAARKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVA 525 (632)
T ss_pred ccCHHHHHHHhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 33334444555567999999999999999999999998854444334899999988777777888888888888777665
Q ss_pred cc----cceeeehh
Q 027590 168 MP----AVQCCQKE 177 (221)
Q Consensus 168 ~~----g~~~~~~~ 177 (221)
.. |..++..+
T Consensus 526 ~~~~~~G~~Vivda 539 (632)
T PRK05506 526 RLMADAGLIVLVSF 539 (632)
T ss_pred HHHHhCCCEEEEEC
Confidence 54 66555543
No 409
>PRK08149 ATP synthase SpaL; Validated
Probab=98.51 E-value=4.4e-07 Score=82.97 Aligned_cols=66 Identities=18% Similarity=0.101 Sum_probs=51.9
Q ss_pred CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cC---ceEEEEECCccccc--------cccccceeecc
Q 027590 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRH--------GLNRDLSFKAE 154 (221)
Q Consensus 87 ~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~---G~i~~~l~g~~~~~--------~~~~~ig~v~q 154 (221)
...++++++ +++.+|+.++|+|+||+|||||+++|++... +. |.| ..+|+++.. ...+++++|+.
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~I--g~rg~ev~e~~~~~l~~~~~~~~~vV~~ 213 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLI--GERGREVTEFVESLRASSRREKCVLVYA 213 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEE--eeCCccHHHHHHHHhhcccccceEEEEE
Confidence 356789999 9999999999999999999999999999873 43 555 677777653 23356778765
Q ss_pred C
Q 027590 155 D 155 (221)
Q Consensus 155 ~ 155 (221)
.
T Consensus 214 ~ 214 (428)
T PRK08149 214 T 214 (428)
T ss_pred C
Confidence 3
No 410
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.48 E-value=2.1e-07 Score=74.81 Aligned_cols=45 Identities=51% Similarity=0.793 Sum_probs=36.9
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhcccc--CceEEEEECCccccccc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHGL 145 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~--~G~i~~~l~g~~~~~~~ 145 (221)
.++|.+++|+|++||||||+++.|...+.. .+.+ +++++.+++.+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~--~~~~d~~r~~~ 50 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVI--YLDGDELREIL 50 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE--EEecHHHHhhc
Confidence 478999999999999999999999998853 3444 78888876543
No 411
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.48 E-value=1.9e-07 Score=75.97 Aligned_cols=54 Identities=28% Similarity=0.490 Sum_probs=38.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc----cccccceeeccChHHH
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVEN 159 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~----~~~~~ig~v~q~~~~~ 159 (221)
|++++|+||||||||||+++|++.+.. .+ .+.+..+.. .....+++++|+....
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT--QL--LVAHRYITRPASAGSENHIALSEQEFFTR 59 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC--eE--EEcCEECCCccchhHHhheeEcHHHHHHH
Confidence 789999999999999999999998743 34 455555443 2234577777775444
No 412
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.47 E-value=1.3e-07 Score=78.07 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=29.9
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+.+++++.. |++++|+||||||||||+|+|++..
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 4667666554 7999999999999999999999876
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.41 E-value=2e-07 Score=80.62 Aligned_cols=52 Identities=19% Similarity=0.120 Sum_probs=42.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----cccccceeeccCh
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRDLSFKAEDR 156 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~ig~v~q~~ 156 (221)
.-++|+||||||||||++.|+|++ +..|++ .++|+++.. ++...+++++|+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i--~~~g~~v~~~d~~~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQL--GLRGKKVGIVDERSEIAGCVNGVPQHD 169 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceE--EECCEEeecchhHHHHHHHhccccccc
Confidence 578999999999999999999999 578999 899998852 3444567777764
No 414
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.38 E-value=4.8e-07 Score=60.93 Aligned_cols=34 Identities=41% Similarity=0.438 Sum_probs=28.2
Q ss_pred cceeEeeC-CcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 94 RQQLLQQK-GCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 94 ~vsl~i~~-Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
+..+++.+ |.++.|+|+||||||||+.++.-.+.
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 45566664 56999999999999999999988873
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.35 E-value=4e-07 Score=75.53 Aligned_cols=39 Identities=23% Similarity=0.061 Sum_probs=35.5
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
...+.+++++++++|++++|+||||+||||++++++++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999999999999999998664
No 416
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.35 E-value=1e-06 Score=80.96 Aligned_cols=64 Identities=31% Similarity=0.311 Sum_probs=50.7
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcc---ccc---------cccccceeecc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN---CRH---------GLNRDLSFKAE 154 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~---~~~---------~~~~~ig~v~q 154 (221)
...+++++ |.+.+|+.++|+|+||+|||||+++|++.. ++.|.+ .+.|++ +.. .+++.+.|+.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI--~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVI--ALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEE--EEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 45789999 999999999999999999999999999998 566776 564433 331 34567888855
No 417
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.33 E-value=5.8e-07 Score=74.00 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=29.7
Q ss_pred ccccceeEeeCCc-EEEEEcCCCCcHHHHHHHHH
Q 027590 91 KRDRQQLLQQKGC-VIWITGLSGSGKSTLACALS 123 (221)
Q Consensus 91 ~l~~vsl~i~~Ge-~i~i~G~sGsGKSTLl~~l~ 123 (221)
.+-++||++.+|+ +++|+||||||||||+|.|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3447899999995 89999999999999999998
No 418
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.32 E-value=4.6e-07 Score=74.70 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=28.0
Q ss_pred cceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 94 ~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
..++++.+|++++|+||||||||||+++|++.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 44667778999999999999999999999954
No 419
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.31 E-value=2e-06 Score=78.95 Aligned_cols=71 Identities=23% Similarity=0.179 Sum_probs=50.4
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECC---ccccc----cc---cccceee----
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDG---DNCRH----GL---NRDLSFK---- 152 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g---~~~~~----~~---~~~ig~v---- 152 (221)
...++|.+ |.+.+|+.++|+|+||||||||+++|++..+ ..+.+ +.+.| +++.. .+ ..+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~v-i~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNV-IALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceE-EEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 45688887 9999999999999999999999999999884 33222 35634 55532 11 2334555
Q ss_pred -ccChHHHH
Q 027590 153 -AEDRVENI 160 (221)
Q Consensus 153 -~q~~~~~~ 160 (221)
+|++...+
T Consensus 229 s~q~p~~rl 237 (442)
T PRK06315 229 SDQSSQLRL 237 (442)
T ss_pred CCCCHHHHh
Confidence 88875444
No 420
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.28 E-value=5.3e-07 Score=74.60 Aligned_cols=29 Identities=45% Similarity=0.513 Sum_probs=26.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHW 128 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~ 128 (221)
++|++++|+|+||||||||++.|+++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 67999999999999999999999999853
No 421
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.28 E-value=2.3e-06 Score=78.64 Aligned_cols=65 Identities=20% Similarity=0.126 Sum_probs=48.9
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccC----ceEEEEECCcccccc-------ccccceeeccC
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHG-------LNRDLSFKAED 155 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~----G~i~~~l~g~~~~~~-------~~~~ig~v~q~ 155 (221)
...++|.+ |.+.+|++++|+|+||+|||||+++|+++.... |.| -+.|+++... -..+.++++|+
T Consensus 162 GiraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~I--gerg~ev~e~~~~~~~~~~~~~tvVv~~ 237 (455)
T PRK07960 162 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLI--GERGREVKDFIENILGAEGRARSVVIAA 237 (455)
T ss_pred cceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEE--EECCeEHHHHHHhhcCcCCCceEEEEEE
Confidence 44566555 999999999999999999999999999998433 555 6778777531 12345667665
No 422
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=8.8e-07 Score=81.60 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=95.4
Q ss_pred ccceeeeeeeEecCCc--cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccce
Q 027590 74 STVAKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLS 150 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~--~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig 150 (221)
.+.+++.++.+.|... ..+.++++.++--.-++++|+||+||||+++++.+-+ |..|.+ .+. .+.+|+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~--~~~-------~r~ri~ 430 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIV--GRH-------PRLRIK 430 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccccee--eec-------ccceec
Confidence 3478888888888644 4889999999999999999999999999999999977 677876 332 345689
Q ss_pred eeccChHHHHH-HHHH---Hhcc--cceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccCC
Q 027590 151 FKAEDRVENIR-RIEK---IEMP--AVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNHH 221 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~---~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (221)
|..|+--.... .+.. .... |... +........+..+.+.+-+-+.-||+|++.|+.++.+.-.++|
T Consensus 431 ~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~-----ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Ph 502 (582)
T KOG0062|consen 431 YFAQHHVDFLDKNVNAVDFMEKSFPGKTE-----EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPH 502 (582)
T ss_pred chhHhhhhHHHHHhHHHHHHHHhCCCCCH-----HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCc
Confidence 99887544433 3332 2222 4311 1112223344555666666678899999999999988777766
No 423
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.24 E-value=1.4e-06 Score=70.12 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCceE
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i 132 (221)
|++++|+||||||||||++.|+..++..|.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~ 31 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRV 31 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcE
Confidence 5789999999999999999999987544544
No 424
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.23 E-value=4.6e-07 Score=74.74 Aligned_cols=34 Identities=35% Similarity=0.418 Sum_probs=27.9
Q ss_pred cccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 92 l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
++++++++.+| +.+|+||||||||||+.+|.-.+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l 45 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL 45 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh
Confidence 35667777777 77899999999999999997554
No 425
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.22 E-value=1.3e-06 Score=81.48 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=50.8
Q ss_pred eeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccc
Q 027590 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNC 141 (221)
Q Consensus 80 ~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~ 141 (221)
.++...++...+++.+++.+..|+.++|+|+||||||||++.|.+++| .+|.. .++...+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e--~le~~~i 248 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEE--ALESAAI 248 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcE--EEecchh
Confidence 366777788889999999999999999999999999999999999995 66876 4554443
No 426
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.22 E-value=9.6e-07 Score=74.25 Aligned_cols=33 Identities=36% Similarity=0.358 Sum_probs=29.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceE
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH-WRGKL 132 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i 132 (221)
.+..+++|.|+||||||||++.|.++++ ..|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 5678999999999999999999999995 66763
No 427
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.20 E-value=1.1e-06 Score=72.08 Aligned_cols=28 Identities=43% Similarity=0.561 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
++|++++|+||||||||||++.|.+.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 428
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.19 E-value=9.3e-06 Score=73.64 Aligned_cols=54 Identities=17% Similarity=0.010 Sum_probs=47.0
Q ss_pred ccceeeeeeeEecC-Cccccc-----------cceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 74 STVAKSTNILWHKN-SVDKRD-----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 74 ~~~~~~~~~~~~~~-~~~~l~-----------~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
..-+..+++++.|. +..+|+ |+.+.+.+|+.++|+||+|||||||++.|...+.
T Consensus 128 ~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 128 KNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34577889999995 346786 9999999999999999999999999999999874
No 429
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.17 E-value=1.2e-06 Score=75.86 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc---cccccceeeccChH
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRV 157 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~---~~~~~ig~v~q~~~ 157 (221)
+++|+|+||||||||++.|+++++..|.. .+..+++.. ..++..|+.++++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~--vi~~Dd~~~~~~~~r~~~g~~~~~p~ 55 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVT--VICLDDYHSLDRKGRKETGITALDPR 55 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceE--EEECcccccCCHHHHHHhhccccccc
Confidence 58999999999999999999999654443 233334432 11234677766653
No 430
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.14 E-value=3e-06 Score=71.28 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=38.8
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc-c-ccCceE
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA-L-HWRGKL 132 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~-l-~~~G~i 132 (221)
..+.+++++.+.+|++++|+||||+||||+++.+++. + +..|..
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~ 63 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSF 63 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 4577899999999999999999999999999999995 3 577875
No 431
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.14 E-value=8.9e-06 Score=74.86 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=36.3
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
...++|.+ |.+.+|+.++|+|+||+|||||+++|++...
T Consensus 155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999 9999999999999999999999999999874
No 432
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.14 E-value=2.9e-06 Score=78.73 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=34.8
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCc
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG 130 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G 130 (221)
.++++.++.+.+|.+++|+||||+||||++..|++.+ ...|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G 285 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHG 285 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence 3456677778899999999999999999999999987 4555
No 433
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.12 E-value=2.9e-06 Score=75.18 Aligned_cols=45 Identities=29% Similarity=0.195 Sum_probs=39.6
Q ss_pred CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceE
Q 027590 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (221)
Q Consensus 87 ~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i 132 (221)
....+++.+ +.+.+|+.++|+|+||+|||||+++|++.. ++.|.+
T Consensus 55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi 100 (326)
T cd01136 55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVI 100 (326)
T ss_pred CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence 356789999 999999999999999999999999999998 455554
No 434
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.12 E-value=2.2e-06 Score=78.57 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=42.8
Q ss_pred CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCcc
Q 027590 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDN 140 (221)
Q Consensus 87 ~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~ 140 (221)
....+++.+ +.+.+|+.++|+|+||+|||||+++|++... +.|.+ .+.|+.
T Consensus 141 tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi--~~iGeR 192 (433)
T PRK07594 141 TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL--VLIGER 192 (433)
T ss_pred CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEE--EEECCC
Confidence 467899999 9999999999999999999999999999884 55543 555543
No 435
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.12 E-value=3.1e-06 Score=88.38 Aligned_cols=50 Identities=22% Similarity=0.277 Sum_probs=39.9
Q ss_pred eeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEE
Q 027590 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133 (221)
Q Consensus 81 ~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~ 133 (221)
++.+.+.....++++||++++|++++|+|+||||||||+..+ +...|++.
T Consensus 940 ~i~i~~~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~---L~~~G~~~ 989 (1809)
T PRK00635 940 DITIKNAYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI---LYAAGNIA 989 (1809)
T ss_pred eEEEeccccccccceeEEecCCcEEEEECCCCCChhHHHHHH---HHhhccEe
Confidence 444445545679999999999999999999999999988876 43378773
No 436
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.08 E-value=2.8e-06 Score=68.20 Aligned_cols=26 Identities=50% Similarity=0.547 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
No 437
>PLN02796 D-glycerate 3-kinase
Probab=98.08 E-value=1.7e-06 Score=77.01 Aligned_cols=52 Identities=25% Similarity=0.208 Sum_probs=39.8
Q ss_pred cccccceeEe---eCCcE-----EEEEcCCCCcHHHHHHHHHhccccC----ceEEEEECCccccc
Q 027590 90 DKRDRQQLLQ---QKGCV-----IWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRH 143 (221)
Q Consensus 90 ~~l~~vsl~i---~~Ge~-----i~i~G~sGsGKSTLl~~l~g~l~~~----G~i~~~l~g~~~~~ 143 (221)
.+++++++.+ ++|+. ++|+|+||||||||++.|.+++... |.+ .+|+..+..
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~I--siDdfYLt~ 143 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASL--SIDDFYLTA 143 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEE--EECCcccch
Confidence 4667777776 45554 9999999999999999999999532 444 778776643
No 438
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.07 E-value=2.9e-06 Score=70.92 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=32.0
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
..+.++++++..+ ++++|+|||||||||++|.+++..
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 3467889998877 999999999999999999997643
No 439
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.07 E-value=4.8e-06 Score=65.95 Aligned_cols=33 Identities=42% Similarity=0.747 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccc
Q 027590 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (221)
Q Consensus 105 i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~ 142 (221)
+.|+||+||||||+++.|.+.+ |.. +++++++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l---~~~--~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL---GAK--FIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc---CCe--EEeCcccc
Confidence 4689999999999999999987 344 67888764
No 440
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.05 E-value=4.8e-06 Score=73.20 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=32.9
Q ss_pred ceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcccc-CceE
Q 027590 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKL 132 (221)
Q Consensus 95 vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~-~G~i 132 (221)
+++.++.|+.++|+|++|||||||+++|++++|+ .+.+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv 175 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERII 175 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEE
Confidence 4567889999999999999999999999999964 4544
No 441
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.05 E-value=5.3e-06 Score=76.26 Aligned_cols=51 Identities=24% Similarity=0.201 Sum_probs=43.0
Q ss_pred CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcc
Q 027590 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (221)
Q Consensus 87 ~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~ 140 (221)
....+++++ +.+.+|+.++|+|+||+|||||++++++.. ++.|.+ .+.|+.
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi--~~iGer 200 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVI--ALIGER 200 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEE--EEEccC
Confidence 356789999 999999999999999999999999999988 455655 566643
No 442
>PRK01889 GTPase RsgA; Reviewed
Probab=98.05 E-value=3.5e-06 Score=75.65 Aligned_cols=46 Identities=30% Similarity=0.250 Sum_probs=38.3
Q ss_pred cccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCc
Q 027590 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (221)
Q Consensus 92 l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~ 139 (221)
++.+.-.+++|++++|+|+||+|||||++.|.|.. +..|.+ .+++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i--~~~~~ 231 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV--REDDS 231 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeE--EECCC
Confidence 44555567899999999999999999999999998 577988 66553
No 443
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.05 E-value=4.6e-06 Score=70.06 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=33.4
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
...+.++++++..++++++|+||||+||||+++.++-.
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH
Confidence 34578899999999999999999999999999997543
No 444
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.04 E-value=4.5e-06 Score=82.96 Aligned_cols=41 Identities=29% Similarity=0.268 Sum_probs=34.4
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHH
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACA 121 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~ 121 (221)
++++.+++ ...|+++||+|++|++++|+|+||||||||++-
T Consensus 612 ~l~l~~~~-----~~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~ 652 (924)
T TIGR00630 612 FLTLKGAR-----ENNLKNITVSIPLGLFTCITGVSGSGKSTLIND 652 (924)
T ss_pred eEEEEeCc-----cCCcCceEEEEeCCCEEEEECCCCCCHHHHHHH
Confidence 45555554 235999999999999999999999999999983
No 445
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.04 E-value=4.8e-06 Score=80.45 Aligned_cols=30 Identities=37% Similarity=0.481 Sum_probs=27.9
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHH
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl 119 (221)
.=|++|+.+|+=|.+++|+|-||||||||.
T Consensus 615 nNLkni~v~iPLg~~t~VTGVSGSGKSTLI 644 (935)
T COG0178 615 NNLKNIDVEIPLGVFTCVTGVSGSGKSTLI 644 (935)
T ss_pred cCcccceeecccccEEEEEecCCCCHHHhH
Confidence 347899999999999999999999999987
No 446
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.02 E-value=5e-06 Score=72.58 Aligned_cols=33 Identities=33% Similarity=0.286 Sum_probs=28.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc---cCceE
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH---WRGKL 132 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~---~~G~i 132 (221)
+...+++|.|+||||||||++.|.+++. .+|.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V 95 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKV 95 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCce
Confidence 4567999999999999999999999984 45665
No 447
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.02 E-value=6.8e-06 Score=67.88 Aligned_cols=28 Identities=43% Similarity=0.558 Sum_probs=25.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
.++.+++|+|+||||||||++.|.+.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999999999883
No 448
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.00 E-value=3.7e-05 Score=69.12 Aligned_cols=27 Identities=44% Similarity=0.706 Sum_probs=25.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++.+++|+||+||||||++++|.+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999987
No 449
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.99 E-value=8.4e-06 Score=76.24 Aligned_cols=48 Identities=29% Similarity=0.336 Sum_probs=40.3
Q ss_pred EecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc----ccCceE
Q 027590 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL----HWRGKL 132 (221)
Q Consensus 84 ~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l----~~~G~i 132 (221)
...|....+||+.+.. +|.+++|.|||||||||+++.|+..+ .+.|.+
T Consensus 267 ~~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~ 318 (512)
T PRK13477 267 VRCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM 318 (512)
T ss_pred EEeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce
Confidence 3568889999999988 88999999999999999999999654 245654
No 450
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.99 E-value=4.8e-06 Score=68.14 Aligned_cols=23 Identities=48% Similarity=0.615 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++|+|+||||||||+++|.+++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 451
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.99 E-value=6.3e-06 Score=75.54 Aligned_cols=44 Identities=27% Similarity=0.176 Sum_probs=39.4
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceE
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i 132 (221)
...+++++ |.+.+|+.++|+|+||+|||||+++|++.. ++.|.+
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi 176 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVI 176 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence 56789999 999999999999999999999999999998 455655
No 452
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.98 E-value=5.7e-06 Score=70.32 Aligned_cols=29 Identities=41% Similarity=0.450 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc-ccCceE
Q 027590 104 VIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i 132 (221)
+++|+||||||||||+.+|++++ +..|++
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 53 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHL 53 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccc
Confidence 99999999999999999999988 444443
No 453
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.97 E-value=9.3e-06 Score=74.19 Aligned_cols=52 Identities=27% Similarity=0.210 Sum_probs=43.7
Q ss_pred CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccc
Q 027590 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (221)
Q Consensus 87 ~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~ 141 (221)
...++++.+ +.+.+|+.++|+|+||+|||||+++|++.. ++.|.+ .+.|++-
T Consensus 123 tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi--~~~Ger~ 175 (413)
T TIGR03497 123 TGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVI--ALIGERG 175 (413)
T ss_pred ccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEE--EEEccch
Confidence 356789999 999999999999999999999999999988 455655 5566544
No 454
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.97 E-value=1.1e-05 Score=81.36 Aligned_cols=67 Identities=21% Similarity=0.364 Sum_probs=57.1
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc----cCceEEEEECCccccccc-cccceeeccCh
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRHGL-NRDLSFKAEDR 156 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~----~~G~i~~~l~g~~~~~~~-~~~ig~v~q~~ 156 (221)
...++++++..+++|+++.++||.|||||||+++++|-+. ..|++ .+||.+..... ++.++|..|+-
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~i--sy~G~~~~e~~~~~~~aY~~e~D 198 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEI--TYNGHDLKEFVPKKTVAYNSEQD 198 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCce--eECCCcccccccCceEEeccccc
Confidence 4579999999999999999999999999999999999984 35777 78999887632 57789988863
No 455
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.96 E-value=6.8e-06 Score=75.13 Aligned_cols=50 Identities=30% Similarity=0.202 Sum_probs=41.5
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~ 140 (221)
...+++ .+|.+.+|+.++|+|+||+|||||+++|++.. ++.|.+ .+.|+.
T Consensus 127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi--~~iGer 177 (418)
T TIGR03498 127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVI--ALVGER 177 (418)
T ss_pred ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEE--EEEeee
Confidence 455665 69999999999999999999999999999998 566765 555554
No 456
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.96 E-value=6.7e-06 Score=68.98 Aligned_cols=29 Identities=34% Similarity=0.314 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc---cCceE
Q 027590 104 VIWITGLSGSGKSTLACALSQALH---WRGKL 132 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~---~~G~i 132 (221)
+++|.|+||||||||++.|.+.+. ..+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v 32 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNV 32 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcE
Confidence 589999999999999999999983 34555
No 457
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=7.4e-06 Score=74.72 Aligned_cols=63 Identities=17% Similarity=0.034 Sum_probs=49.9
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCceEEEEECCccc
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILDGDNC 141 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l---~~~G~i~~~l~g~~~ 141 (221)
+++.|++.+-.....+.+.|+.|-.|..++++||||-|||||++.|+..- |+.=.+ ++..+.+
T Consensus 265 IKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDv--LlCEQEv 330 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDV--LLCEQEV 330 (807)
T ss_pred ceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCce--Eeeeeee
Confidence 56677776666777889999999999999999999999999999998763 444344 5555544
No 458
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.94 E-value=7.7e-06 Score=75.28 Aligned_cols=44 Identities=32% Similarity=0.212 Sum_probs=38.7
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceE
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKL 132 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i 132 (221)
...+++.+ +.+.+|+.++|+|+||+|||||+++|++... +.+.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi 194 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVI 194 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEE
Confidence 46789999 9999999999999999999999999999884 44544
No 459
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.93 E-value=9.1e-06 Score=71.20 Aligned_cols=44 Identities=36% Similarity=0.345 Sum_probs=38.1
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceE
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i 132 (221)
..+++++++...++.+++|+|++|||||||+..+...+...|.-
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~ 64 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLK 64 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 35788999999999999999999999999999999987544543
No 460
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.91 E-value=8.7e-06 Score=65.62 Aligned_cols=33 Identities=36% Similarity=0.385 Sum_probs=27.3
Q ss_pred ccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 93 ~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++++++.+| +.+|+|+||+||||++.+|.-.+
T Consensus 11 ~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 11 KDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 5667777776 89999999999999999998877
No 461
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.89 E-value=1.8e-05 Score=72.52 Aligned_cols=40 Identities=25% Similarity=0.194 Sum_probs=35.4
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW 128 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~ 128 (221)
...+++.+ +.+.+|+.++|+|+||+|||||+++|++....
T Consensus 149 Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~ 188 (444)
T PRK08972 149 GVRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTA 188 (444)
T ss_pred cceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCC
Confidence 45677777 99999999999999999999999999997643
No 462
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.89 E-value=1.4e-05 Score=72.97 Aligned_cols=50 Identities=26% Similarity=0.145 Sum_probs=41.1
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCcc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDN 140 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~ 140 (221)
...+++.+ |.+.+|+.++|+|+||+|||||+++|++... +.+.+ .+.|++
T Consensus 124 Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi--~~iGer 174 (411)
T TIGR03496 124 GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVV--GLIGER 174 (411)
T ss_pred eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEE--EEEecC
Confidence 56788888 9999999999999999999999999999884 44443 444443
No 463
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.88 E-value=1.2e-05 Score=73.71 Aligned_cols=52 Identities=31% Similarity=0.210 Sum_probs=42.5
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCcccc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCR 142 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~ 142 (221)
...+++++ +++.+|++++|+|+||+|||||+++|++... +.+.+ .+.|+.-+
T Consensus 144 gi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi--~~iGergr 196 (434)
T PRK08472 144 GVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVV--ALIGERGR 196 (434)
T ss_pred hhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEE--EeeCccch
Confidence 45689999 9999999999999999999999999998773 44544 55665543
No 464
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.88 E-value=1.3e-05 Score=79.92 Aligned_cols=33 Identities=33% Similarity=0.339 Sum_probs=30.9
Q ss_pred ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHH
Q 027590 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (221)
Q Consensus 91 ~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~ 123 (221)
.++++||++++|++++|+|+||||||||++.+.
T Consensus 624 ~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 624 NLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 589999999999999999999999999998763
No 465
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.88 E-value=1.5e-05 Score=72.84 Aligned_cols=33 Identities=36% Similarity=0.392 Sum_probs=29.8
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCce
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQAL-HWRGK 131 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~ 131 (221)
.++|++++|+|+||-||||.+|.|+|.+ |.-|+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~ 130 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGR 130 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCC
Confidence 4789999999999999999999999998 65565
No 466
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.86 E-value=1.5e-05 Score=70.52 Aligned_cols=55 Identities=27% Similarity=0.395 Sum_probs=39.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccccc---------cccccceeeccC
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH---------GLNRDLSFKAED 155 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~---------~~~~~ig~v~q~ 155 (221)
.+|++++++||||+||||++..|++.+. ..+++. +++.+..+. ..+..+++++|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~-Li~~D~~r~~a~eql~~~a~~~~i~~~~~~ 176 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVL-LAAGDTFRAAAIEQLQVWGERVGVPVIAQK 176 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEE-EEecCccchhhHHHHHHHHHHcCceEEEeC
Confidence 5799999999999999999999999985 446662 344332221 233457887763
No 467
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.85 E-value=1e-05 Score=64.70 Aligned_cols=44 Identities=32% Similarity=0.349 Sum_probs=32.0
Q ss_pred EcCCCCcHHHHHHHHHhccccCceEEEEECCccccc---cccccceeeccCh
Q 027590 108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDR 156 (221)
Q Consensus 108 ~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~---~~~~~ig~v~q~~ 156 (221)
+|+||||||||++.|.+.+ |.+ .++|+.+.. ......|+.+|+.
T Consensus 1 ~G~sGsGKSTla~~la~~l---~~~--~~~~d~~~~~~~~~~~~~g~~~~~~ 47 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL---HAA--FLDGDFLHPRRNIEKMASGEPLNDD 47 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh---CCe--EEeCccCCchhhhccccCCCCCChh
Confidence 5999999999999999988 555 778866432 1223457777764
No 468
>PRK05922 type III secretion system ATPase; Validated
Probab=97.85 E-value=2.2e-05 Score=72.04 Aligned_cols=44 Identities=25% Similarity=0.251 Sum_probs=37.6
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceE
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKL 132 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i 132 (221)
...++|.+ +.+.+|+.++|+|+||+|||||+++|++..+ +.|.+
T Consensus 144 GIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi 188 (434)
T PRK05922 144 GIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVI 188 (434)
T ss_pred Cceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEE
Confidence 45677765 9999999999999999999999999999874 55654
No 469
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.85 E-value=1.7e-05 Score=83.14 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=29.8
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHHH
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLAC 120 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~ 120 (221)
..|+++||++++||+++|+|+||||||||++
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 4689999999999999999999999999999
No 470
>PRK09183 transposase/IS protein; Provisional
Probab=97.85 E-value=1.2e-05 Score=69.20 Aligned_cols=48 Identities=23% Similarity=0.199 Sum_probs=37.1
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECC
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g 138 (221)
..|.+++| +++|+.+.|+||+|+|||+|+.+|+......|.-++++..
T Consensus 91 ~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 91 QSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred HHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 34667788 9999999999999999999999997766545643334443
No 471
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.83 E-value=1.4e-05 Score=74.80 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=44.4
Q ss_pred CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccc
Q 027590 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNC 141 (221)
Q Consensus 87 ~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~ 141 (221)
+...+.+.+++.+..|+.+.|+||||||||||++.+.+++| .+|.+ .++...+
T Consensus 196 Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~--~le~~~i 249 (499)
T TIGR00368 196 GQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEE--AIETARI 249 (499)
T ss_pred CcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcE--EEecccc
Confidence 56677889999999999999999999999999999999995 56766 4554443
No 472
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.82 E-value=1.4e-05 Score=59.77 Aligned_cols=23 Identities=61% Similarity=0.767 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++|.|++||||||+++.|+..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999876
No 473
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.81 E-value=3.3e-05 Score=57.42 Aligned_cols=40 Identities=45% Similarity=0.623 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCc-eEEEEECCccc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNC 141 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G-~i~~~l~g~~~ 141 (221)
++..+.|+||+||||||+++.++..+...+ .+ ++++....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~-~~~~~~~~ 41 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV-IYIDGEDI 41 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCE-EEECCEEc
Confidence 367899999999999999999999986543 22 25665543
No 474
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.81 E-value=2.1e-05 Score=65.63 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=28.4
Q ss_pred ccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc--cccCceE
Q 027590 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--LHWRGKL 132 (221)
Q Consensus 93 ~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~--l~~~G~i 132 (221)
+++++.-..+.+++|+||||+|||||+|.+... ++..|..
T Consensus 20 nd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~ 61 (213)
T cd03281 20 NDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSF 61 (213)
T ss_pred ceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCe
Confidence 344443222378999999999999999999843 3455654
No 475
>PRK08233 hypothetical protein; Provisional
Probab=97.80 E-value=3e-05 Score=62.03 Aligned_cols=28 Identities=39% Similarity=0.490 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHW 128 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~ 128 (221)
++.+++|.|++|||||||++.|+..++.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 3578999999999999999999998853
No 476
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.80 E-value=2.9e-05 Score=63.91 Aligned_cols=29 Identities=31% Similarity=0.475 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc-c-CceE
Q 027590 104 VIWITGLSGSGKSTLACALSQALH-W-RGKL 132 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~-~-~G~i 132 (221)
++.|+||+||||||+++.+.+.++ . .|.+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i 33 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHI 33 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEE
Confidence 688999999999999999998885 3 4665
No 477
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.80 E-value=1.9e-05 Score=63.65 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=29.4
Q ss_pred ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 91 ~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
+++++++..+++++ +|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 57788888888776 9999999999999999987
No 478
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.77 E-value=2.3e-05 Score=74.13 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=37.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccCh
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~ 156 (221)
--+++|.|+||||||||++.|.++++..|.+ .+|+.... .+.+.+.+|++
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglLp~vgvI--smDdy~~~---~~~i~~nfD~P 114 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVI--SMDNYNDS---SRIIDGNFDDP 114 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhCCCcEEE--EEcceecc---hhhhCccCCCh
Confidence 3599999999999999999999998766776 77775321 22355666665
No 479
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.77 E-value=4.1e-05 Score=70.30 Aligned_cols=51 Identities=27% Similarity=0.249 Sum_probs=41.3
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~ 140 (221)
...+++.+ +++.+|+.++|+|+||+|||||+++|++..... -++|.+-|+.
T Consensus 149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~d-v~V~~liGER 199 (439)
T PRK06936 149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD-VTVLALIGER 199 (439)
T ss_pred Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCC-EEEEEEEccC
Confidence 45689999 999999999999999999999999999987432 3444444544
No 480
>PRK06762 hypothetical protein; Provisional
Probab=97.77 E-value=2.3e-05 Score=62.20 Aligned_cols=39 Identities=41% Similarity=0.562 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~ 143 (221)
+.+++|+|++||||||+++.|...++. +.. +++++.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~-~~~--~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR-GTL--LVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC-CeE--EecHHHHHH
Confidence 468999999999999999999988742 444 667766654
No 481
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.75 E-value=3.4e-05 Score=70.79 Aligned_cols=50 Identities=28% Similarity=0.213 Sum_probs=41.7
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~ 140 (221)
...+++.+ |.+.+|+.++|+|+||+|||||+++|++.. ++.|.+ .+.|+.
T Consensus 143 GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI--~~iGer 193 (432)
T PRK06793 143 GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVI--SLVGER 193 (432)
T ss_pred CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEE--EeCCCC
Confidence 45677774 999999999999999999999999999998 466766 565554
No 482
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.75 E-value=2.2e-05 Score=64.17 Aligned_cols=27 Identities=59% Similarity=0.738 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCc
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRG 130 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G 130 (221)
+|+|.|+||||||||++.|...+...|
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccC
Confidence 689999999999999999999986433
No 483
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.75 E-value=6.8e-05 Score=58.20 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 027590 104 VIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
+++|+||||||||||++.|.+.++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999999875
No 484
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.75 E-value=2.3e-05 Score=64.77 Aligned_cols=29 Identities=41% Similarity=0.508 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCceE
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRGKL 132 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G~i 132 (221)
.++|+|++|||||||++.+.+.++..+.+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~ 31 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQL 31 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcE
Confidence 68999999999999999999988544344
No 485
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.74 E-value=4.1e-05 Score=69.69 Aligned_cols=46 Identities=24% Similarity=0.219 Sum_probs=36.7
Q ss_pred ecC-CccccccceeEeeCCc-----EEEEEcCCCCcHHHHHHHHHhcc-ccCc
Q 027590 85 HKN-SVDKRDRQQLLQQKGC-----VIWITGLSGSGKSTLACALSQAL-HWRG 130 (221)
Q Consensus 85 ~~~-~~~~l~~vsl~i~~Ge-----~i~i~G~sGsGKSTLl~~l~g~l-~~~G 130 (221)
+|. .+..+.+..|.|..|+ ++..+|+||.||||++++++|.+ |+.|
T Consensus 344 ~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~ 396 (592)
T KOG0063|consen 344 SYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG 396 (592)
T ss_pred ccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc
Confidence 353 3455678888888775 78899999999999999999998 5554
No 486
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.72 E-value=6.3e-05 Score=58.60 Aligned_cols=35 Identities=46% Similarity=0.732 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~ 143 (221)
+++|+|++||||||+++.|...+ |.. +++++.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~---~~~--~i~~D~~~~ 35 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL---GAP--FIDGDDLHP 35 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc---CCE--EEeCccccc
Confidence 47899999999999999998874 334 677777654
No 487
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.71 E-value=3.9e-05 Score=64.37 Aligned_cols=39 Identities=26% Similarity=0.190 Sum_probs=35.2
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
...+-++++|++.+|++++|+||||+||||+++.++...
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 446778999999999999999999999999999998874
No 488
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.70 E-value=5e-05 Score=78.83 Aligned_cols=45 Identities=24% Similarity=0.153 Sum_probs=36.9
Q ss_pred ccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcc
Q 027590 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (221)
Q Consensus 93 ~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~ 140 (221)
.+..|.+.+| +++|+|+|||||||++++|++++ +..|.+ .|++.+
T Consensus 19 ~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~--~f~~~~ 64 (1486)
T PRK04863 19 FARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLL--HFRNTT 64 (1486)
T ss_pred cceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeE--EECCcc
Confidence 3446777776 89999999999999999999998 566777 677654
No 489
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.69 E-value=4.3e-05 Score=60.80 Aligned_cols=38 Identities=34% Similarity=0.398 Sum_probs=29.0
Q ss_pred cceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCce
Q 027590 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGK 131 (221)
Q Consensus 94 ~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~ 131 (221)
..++.+.++.++.|+|||||||||+++++.-.+ ...+.
T Consensus 13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~ 51 (162)
T cd03227 13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSA 51 (162)
T ss_pred ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchh
Confidence 344455566799999999999999999987776 34433
No 490
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.68 E-value=2.1e-05 Score=63.22 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH---hcc-ccCceE
Q 027590 102 GCVIWITGLSGSGKSTLACALS---QAL-HWRGKL 132 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~---g~l-~~~G~i 132 (221)
-.+++|+|++||||||+++.|+ |+. .+.|.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~ 37 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDL 37 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence 4589999999999999999998 554 244543
No 491
>PRK06696 uridine kinase; Validated
Probab=97.67 E-value=4.7e-05 Score=63.73 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEEC
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~ 137 (221)
..-+|+|.|+||||||||++.|...++..|..++.+.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4569999999999999999999999875564433433
No 492
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.00013 Score=57.96 Aligned_cols=61 Identities=34% Similarity=0.525 Sum_probs=45.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc-----cccccceeeccChHHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRIEKIEMP 169 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~-----~~~~~ig~v~q~~~~~~~~v~~~~~~ 169 (221)
++.++|.|||||||+.++|.--+ |.- +++|+++.. ...+.|..--+||.-++..++...+.
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l---~~~--F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~ 79 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEEL---GLK--FIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRK 79 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHh---CCc--ccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHH
Confidence 78899999999999999998877 333 789998864 23445666677887777666655444
No 493
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.67 E-value=3.3e-05 Score=52.87 Aligned_cols=23 Identities=61% Similarity=0.715 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++|+|++||||||+++.|...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 494
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.67 E-value=4.6e-05 Score=59.12 Aligned_cols=30 Identities=37% Similarity=0.450 Sum_probs=27.4
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
.+++|.+++|.|+.|||||||+|.++..+.
T Consensus 18 ~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 18 PLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred hCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 358899999999999999999999999874
No 495
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=3.4e-05 Score=69.57 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=33.8
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
..+++..++.+.+|.+++|+||||+||||++..|+..+
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45667788889999999999999999999999999875
No 496
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=4.4e-05 Score=74.32 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=35.2
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCc
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG 130 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G 130 (221)
.++++.++.+.+|++++|+||||+||||++..|++.+ ...|
T Consensus 173 ~il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G 214 (767)
T PRK14723 173 PVLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG 214 (767)
T ss_pred hhccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence 3566778888889999999999999999999999988 4555
No 497
>PRK07429 phosphoribulokinase; Provisional
Probab=97.64 E-value=6.5e-05 Score=66.73 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=34.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCcc-ccccccccceeeccCh
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDN-CRHGLNRDLSFKAEDR 156 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~-~~~~~~~~ig~v~q~~ 156 (221)
.=+++|.|+||||||||++.|++++. ..+.+ +..|+-- .....++..|+.++++
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~v-i~~Dd~~~~~~~~r~~~g~~~l~p 63 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLGEELVTV-ICTDDYHSYDRKQRKELGITALDP 63 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhccCceEE-EEecccccCCHHHHHhcCCcccCc
Confidence 34899999999999999999999985 43433 2344321 1112234456655544
No 498
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.62 E-value=5e-05 Score=61.02 Aligned_cols=27 Identities=41% Similarity=0.564 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
+|.++.|.|++||||||+++.|...++
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999988763
No 499
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=2.5e-05 Score=61.45 Aligned_cols=57 Identities=30% Similarity=0.525 Sum_probs=42.3
Q ss_pred EcCCCCcHHHHHHHHHhccccCceEEEEECCccccc-----cccccceeeccChHHHHHHHHHHhcc
Q 027590 108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRIEKIEMP 169 (221)
Q Consensus 108 ~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~-----~~~~~ig~v~q~~~~~~~~v~~~~~~ 169 (221)
+|.|||||||+...|+..+ |.. +++|+++.. .....+..--+||.-++.++++.+..
T Consensus 1 MGVsG~GKStvg~~lA~~l---g~~--fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~ 62 (161)
T COG3265 1 MGVSGSGKSTVGSALAERL---GAK--FIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAAS 62 (161)
T ss_pred CCCCccCHHHHHHHHHHHc---CCc--eecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHH
Confidence 5899999999999999887 334 789998864 23344556677888888877765544
No 500
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.60 E-value=4.7e-05 Score=61.65 Aligned_cols=29 Identities=41% Similarity=0.418 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALHWRG 130 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G 130 (221)
..+++|+|+||||||||++.|.+.+...|
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcC
Confidence 44899999999999999999999985433
Done!