Query 027590
Match_columns 221
No_of_seqs 256 out of 2550
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 20:46:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 99.9 1.2E-22 4.2E-27 180.1 9.0 134 75-220 3-157 (359)
2 3rlf_A Maltose/maltodextrin im 99.9 7.5E-23 2.6E-27 182.7 2.4 142 76-220 3-152 (381)
3 3gfo_A Cobalt import ATP-bindi 99.9 1.8E-22 6.3E-27 173.2 4.3 143 75-220 6-162 (275)
4 3tif_A Uncharacterized ABC tra 99.9 1.6E-22 5.5E-27 169.7 3.5 142 77-220 2-164 (235)
5 2pcj_A ABC transporter, lipopr 99.9 3.2E-21 1.1E-25 160.6 11.2 143 75-220 3-159 (224)
6 4g1u_C Hemin import ATP-bindin 99.9 6.9E-22 2.4E-26 168.8 7.4 141 75-218 10-158 (266)
7 1b0u_A Histidine permease; ABC 99.8 9.3E-23 3.2E-27 173.8 1.7 142 76-220 6-172 (262)
8 1ji0_A ABC transporter; ATP bi 99.8 1.1E-22 3.6E-27 171.3 1.8 144 75-220 5-158 (240)
9 2ihy_A ABC transporter, ATP-bi 99.8 1E-21 3.5E-26 168.8 7.9 137 75-219 20-179 (279)
10 2olj_A Amino acid ABC transpor 99.8 4.8E-22 1.7E-26 169.6 5.3 143 74-219 22-177 (263)
11 1g6h_A High-affinity branched- 99.8 2E-22 7E-27 171.1 2.6 144 75-220 6-172 (257)
12 1vpl_A ABC transporter, ATP-bi 99.8 7.3E-21 2.5E-25 161.6 12.0 143 74-219 13-164 (256)
13 1z47_A CYSA, putative ABC-tran 99.8 9.4E-21 3.2E-25 167.9 12.8 144 74-220 12-164 (355)
14 3tui_C Methionine import ATP-b 99.8 1.5E-21 5.2E-26 173.4 7.4 145 73-220 21-182 (366)
15 1mv5_A LMRA, multidrug resista 99.8 2.1E-21 7.2E-26 163.5 7.8 141 77-219 2-157 (243)
16 1v43_A Sugar-binding transport 99.8 5.3E-22 1.8E-26 176.9 4.0 142 76-220 11-160 (372)
17 3nh6_A ATP-binding cassette SU 99.8 1.1E-21 3.8E-26 170.7 5.4 136 75-219 52-208 (306)
18 2yyz_A Sugar ABC transporter, 99.8 3.9E-22 1.3E-26 177.1 2.5 142 76-220 3-152 (359)
19 1sgw_A Putative ABC transporte 99.8 2.6E-22 8.8E-27 166.4 0.8 137 76-220 10-152 (214)
20 2it1_A 362AA long hypothetical 99.8 1.8E-20 6.3E-25 166.4 12.5 142 76-220 3-152 (362)
21 2ff7_A Alpha-hemolysin translo 99.8 3.4E-21 1.2E-25 162.8 7.4 139 77-220 8-164 (247)
22 1oxx_K GLCV, glucose, ABC tran 99.8 3E-21 1E-25 171.0 7.0 142 76-220 3-159 (353)
23 3gd7_A Fusion complex of cysti 99.8 3E-21 1E-25 173.0 7.0 81 75-157 18-104 (390)
24 2yz2_A Putative ABC transporte 99.8 8.7E-22 3E-26 168.1 3.1 143 76-220 2-157 (266)
25 2ixe_A Antigen peptide transpo 99.8 2.6E-21 8.8E-26 165.7 5.7 144 74-219 14-174 (271)
26 1g29_1 MALK, maltose transport 99.8 2.7E-20 9.2E-25 166.0 12.3 142 76-220 3-158 (372)
27 3d31_A Sulfate/molybdate ABC t 99.8 1.3E-20 4.4E-25 166.6 7.2 139 77-220 2-146 (348)
28 2ghi_A Transport protein; mult 99.8 1.2E-20 4.1E-25 160.6 6.3 140 75-219 16-173 (260)
29 2d2e_A SUFC protein; ABC-ATPas 99.8 7.5E-21 2.6E-25 160.8 4.2 80 76-157 3-90 (250)
30 2onk_A Molybdate/tungstate ABC 99.8 8.1E-21 2.8E-25 159.9 1.9 138 77-220 2-145 (240)
31 2pze_A Cystic fibrosis transme 99.8 2.6E-20 9E-25 155.5 5.0 135 75-220 5-149 (229)
32 2zu0_C Probable ATP-dependent 99.8 2.4E-20 8.1E-25 159.3 4.2 80 75-156 19-106 (267)
33 2pjz_A Hypothetical protein ST 99.8 6.4E-21 2.2E-25 162.6 0.4 140 77-220 2-147 (263)
34 2nq2_C Hypothetical ABC transp 99.8 9.3E-21 3.2E-25 160.7 1.4 133 76-220 4-147 (253)
35 2qi9_C Vitamin B12 import ATP- 99.8 5.7E-21 1.9E-25 161.7 0.0 135 76-219 4-144 (249)
36 3b5x_A Lipid A export ATP-bind 99.8 2.3E-19 8E-24 168.1 10.6 143 75-220 340-499 (582)
37 2cbz_A Multidrug resistance-as 99.8 6.6E-20 2.3E-24 153.9 5.6 133 76-219 3-145 (237)
38 3b60_A Lipid A export ATP-bind 99.8 2.5E-19 8.6E-24 167.9 6.3 142 75-220 340-499 (582)
39 4a82_A Cystic fibrosis transme 99.8 2.2E-19 7.4E-24 168.2 5.6 143 75-220 338-496 (578)
40 3qf4_A ABC transporter, ATP-bi 99.8 3.1E-19 1.1E-23 167.5 5.6 145 74-220 339-498 (587)
41 3qf4_B Uncharacterized ABC tra 99.8 1.8E-19 6.1E-24 169.5 3.1 144 75-220 353-510 (598)
42 2yl4_A ATP-binding cassette SU 99.7 5.6E-19 1.9E-23 165.9 5.8 92 77-170 342-441 (595)
43 4f4c_A Multidrug resistance pr 99.7 2.9E-18 9.9E-23 173.6 6.6 95 74-170 1074-1176(1321)
44 4f4c_A Multidrug resistance pr 99.7 5.1E-18 1.8E-22 171.7 7.2 145 73-220 412-573 (1321)
45 2bbs_A Cystic fibrosis transme 99.7 2.6E-18 8.8E-23 148.4 0.7 133 74-220 38-178 (290)
46 3g5u_A MCG1178, multidrug resi 99.7 2.2E-17 7.6E-22 166.7 7.1 94 75-170 1029-1130(1284)
47 3g5u_A MCG1178, multidrug resi 99.7 1.4E-17 4.8E-22 168.2 5.6 141 74-220 385-545 (1284)
48 1yqt_A RNAse L inhibitor; ATP- 99.6 1.2E-16 4.2E-21 148.5 -0.1 133 75-220 286-420 (538)
49 3bk7_A ABC transporter ATP-bin 99.6 1.2E-16 4.3E-21 150.4 -1.2 133 75-220 356-490 (607)
50 2iw3_A Elongation factor 3A; a 99.6 3.5E-15 1.2E-19 146.3 7.1 74 75-157 670-746 (986)
51 3ozx_A RNAse L inhibitor; ATP 99.5 6E-16 2.1E-20 143.9 0.5 134 75-220 268-404 (538)
52 3uie_A Adenylyl-sulfate kinase 99.5 3.8E-15 1.3E-19 120.8 3.7 89 80-168 3-91 (200)
53 1htw_A HI0065; nucleotide-bind 99.5 9.8E-16 3.3E-20 121.0 -1.7 75 79-156 10-84 (158)
54 3bk7_A ABC transporter ATP-bin 99.4 7.1E-15 2.4E-19 138.4 -0.7 134 80-220 95-247 (607)
55 1yqt_A RNAse L inhibitor; ATP- 99.4 7.3E-15 2.5E-19 136.6 -0.7 132 80-220 25-177 (538)
56 3ux8_A Excinuclease ABC, A sub 99.4 3.6E-14 1.2E-18 134.8 4.0 70 88-157 30-126 (670)
57 1z6g_A Guanylate kinase; struc 99.4 1.3E-13 4.4E-18 113.7 5.4 68 88-160 9-81 (218)
58 3b85_A Phosphate starvation-in 99.4 1.4E-14 4.7E-19 119.3 -0.9 110 85-219 9-122 (208)
59 2iw3_A Elongation factor 3A; a 99.4 1.4E-13 4.8E-18 135.0 3.2 130 77-220 436-567 (986)
60 3ux8_A Excinuclease ABC, A sub 99.3 3.3E-13 1.1E-17 128.2 2.4 36 88-123 334-369 (670)
61 3j16_B RLI1P; ribosome recycli 99.3 5.6E-14 1.9E-18 132.3 -3.1 129 80-220 350-486 (608)
62 2dpy_A FLII, flagellum-specifi 99.3 1E-12 3.6E-17 119.2 3.4 78 75-155 130-221 (438)
63 3b9q_A Chloroplast SRP recepto 99.3 2.1E-12 7.3E-17 111.8 4.2 65 91-157 89-164 (302)
64 1tf7_A KAIC; homohexamer, hexa 99.2 1.7E-12 5.9E-17 120.0 2.7 128 79-217 15-149 (525)
65 2npi_A Protein CLP1; CLP1-PCF1 99.2 3.4E-13 1.2E-17 123.1 -2.0 69 75-156 117-188 (460)
66 2jeo_A Uridine-cytidine kinase 99.2 2.4E-12 8.1E-17 107.6 3.0 41 86-126 9-49 (245)
67 2qm8_A GTPase/ATPase; G protei 99.2 7.6E-13 2.6E-17 116.2 -0.9 79 76-156 29-116 (337)
68 1znw_A Guanylate kinase, GMP k 99.2 5.5E-12 1.9E-16 102.7 4.2 64 89-159 9-76 (207)
69 2v9p_A Replication protein E1; 99.2 1E-12 3.4E-17 114.1 -1.2 54 76-132 101-154 (305)
70 2eyu_A Twitching motility prot 99.2 4.9E-12 1.7E-16 107.3 2.8 61 90-154 15-77 (261)
71 2og2_A Putative signal recogni 99.2 7.9E-12 2.7E-16 110.7 3.7 63 93-157 148-221 (359)
72 3tr0_A Guanylate kinase, GMP k 99.2 3.9E-11 1.3E-15 96.5 6.9 60 96-160 1-64 (205)
73 3sop_A Neuronal-specific septi 99.2 1.6E-12 5.6E-17 110.8 -1.9 105 104-215 4-112 (270)
74 2pt7_A CAG-ALFA; ATPase, prote 99.1 6.4E-12 2.2E-16 110.1 1.4 62 91-154 160-224 (330)
75 3euj_A Chromosome partition pr 99.1 2.5E-11 8.5E-16 111.3 4.3 51 89-142 17-68 (483)
76 1s96_A Guanylate kinase, GMP k 99.1 4.5E-11 1.5E-15 98.9 5.0 61 98-160 12-75 (219)
77 2obl_A ESCN; ATPase, hydrolase 99.1 2.1E-11 7.1E-16 107.6 2.7 62 76-140 45-108 (347)
78 2gza_A Type IV secretion syste 99.1 1.9E-11 6.4E-16 108.2 1.6 64 92-157 165-232 (361)
79 1sq5_A Pantothenate kinase; P- 99.1 5.4E-12 1.9E-16 109.2 -2.0 75 74-152 35-134 (308)
80 2yhs_A FTSY, cell division pro 99.1 5.3E-11 1.8E-15 109.2 4.4 63 92-156 283-356 (503)
81 1zp6_A Hypothetical protein AT 99.1 1.5E-10 5.3E-15 92.0 6.0 57 98-157 5-63 (191)
82 1tq4_A IIGP1, interferon-induc 99.0 2.6E-11 9E-16 109.2 0.6 52 88-141 35-107 (413)
83 4gp7_A Metallophosphoesterase; 99.0 2E-10 6.9E-15 90.8 4.8 28 94-121 1-28 (171)
84 3aez_A Pantothenate kinase; tr 99.0 3.2E-11 1.1E-15 104.9 -0.2 32 99-130 87-119 (312)
85 2qag_B Septin-6, protein NEDD5 99.0 7.6E-11 2.6E-15 106.5 1.3 43 83-126 22-66 (427)
86 3cr8_A Sulfate adenylyltranfer 99.0 2.9E-10 1E-14 105.9 5.1 71 98-169 365-437 (552)
87 3j16_B RLI1P; ribosome recycli 99.0 2.7E-10 9.1E-15 107.3 4.2 52 80-132 81-134 (608)
88 1qhl_A Protein (cell division 98.9 2.8E-11 9.7E-16 100.8 -2.6 57 96-155 22-91 (227)
89 1rj9_A FTSY, signal recognitio 98.9 5.2E-10 1.8E-14 96.9 5.1 54 101-156 101-165 (304)
90 2i3b_A HCR-ntpase, human cance 98.9 1.6E-10 5.5E-15 93.5 1.7 51 102-155 1-53 (189)
91 3lnc_A Guanylate kinase, GMP k 98.9 3.7E-10 1.3E-14 93.1 3.9 39 89-127 14-53 (231)
92 1p9r_A General secretion pathw 98.9 1.3E-10 4.4E-15 104.9 0.5 74 76-153 143-225 (418)
93 1u0l_A Probable GTPase ENGC; p 98.9 4.3E-10 1.5E-14 97.0 3.0 59 97-157 164-230 (301)
94 2pez_A Bifunctional 3'-phospho 98.9 9.1E-10 3.1E-14 87.0 4.2 66 100-165 3-68 (179)
95 4aby_A DNA repair protein RECN 98.9 5.5E-10 1.9E-14 99.5 3.1 39 88-127 47-85 (415)
96 2ewv_A Twitching motility prot 98.9 7.1E-10 2.4E-14 98.5 3.5 60 91-154 127-188 (372)
97 3nwj_A ATSK2; P loop, shikimat 98.9 2.2E-10 7.4E-15 96.7 -0.3 52 75-126 16-72 (250)
98 2ehv_A Hypothetical protein PH 98.9 8.5E-10 2.9E-14 90.9 3.1 56 98-155 26-87 (251)
99 4eun_A Thermoresistant glucoki 98.8 1.3E-09 4.5E-14 87.9 3.4 57 96-157 23-82 (200)
100 2j41_A Guanylate kinase; GMP, 98.8 2.8E-09 9.6E-14 85.5 4.8 60 97-158 1-62 (207)
101 1cr0_A DNA primase/helicase; R 98.8 1.1E-09 3.9E-14 93.4 1.3 49 89-138 22-72 (296)
102 2yv5_A YJEQ protein; hydrolase 98.8 2.8E-09 9.7E-14 91.9 3.5 57 98-157 161-225 (302)
103 2qnr_A Septin-2, protein NEDD5 98.8 2.9E-09 9.9E-14 91.8 3.5 67 80-155 2-71 (301)
104 3szr_A Interferon-induced GTP- 98.8 6.6E-10 2.3E-14 104.6 -0.8 55 97-156 43-106 (608)
105 3ozx_A RNAse L inhibitor; ATP 98.7 4.4E-09 1.5E-13 97.7 4.4 50 82-132 5-56 (538)
106 4e22_A Cytidylate kinase; P-lo 98.7 1.4E-09 4.8E-14 91.2 0.4 54 100-155 25-95 (252)
107 3e70_C DPA, signal recognition 98.7 6.2E-09 2.1E-13 91.0 4.5 44 98-143 125-169 (328)
108 3a00_A Guanylate kinase, GMP k 98.7 7.7E-09 2.6E-13 82.5 4.6 27 102-128 1-27 (186)
109 3kta_A Chromosome segregation 98.7 8.3E-09 2.8E-13 81.5 4.4 38 93-131 18-56 (182)
110 3c8u_A Fructokinase; YP_612366 98.7 4.7E-09 1.6E-13 85.2 3.0 42 99-142 19-64 (208)
111 1t9h_A YLOQ, probable GTPase E 98.7 1.9E-09 6.6E-14 93.5 0.6 58 97-156 168-232 (307)
112 3jvv_A Twitching mobility prot 98.7 1E-08 3.5E-13 90.6 5.2 45 88-132 102-155 (356)
113 2yvu_A Probable adenylyl-sulfa 98.7 1.9E-08 6.4E-13 79.9 6.0 68 97-165 8-76 (186)
114 4a74_A DNA repair and recombin 98.7 1.2E-08 4E-13 82.9 4.7 29 98-126 21-49 (231)
115 3asz_A Uridine kinase; cytidin 98.7 1.2E-08 4E-13 82.5 4.1 29 99-127 3-31 (211)
116 2oap_1 GSPE-2, type II secreti 98.7 7E-09 2.4E-13 95.8 2.8 50 89-140 247-297 (511)
117 2bdt_A BH3686; alpha-beta prot 98.7 9E-09 3.1E-13 81.9 3.1 49 102-156 2-50 (189)
118 1ye8_A Protein THEP1, hypothet 98.6 6.8E-09 2.3E-13 82.9 2.1 47 104-156 2-52 (178)
119 1kgd_A CASK, peripheral plasma 98.6 2.2E-08 7.6E-13 79.4 5.0 28 100-127 3-30 (180)
120 3vaa_A Shikimate kinase, SK; s 98.6 1.3E-08 4.4E-13 81.9 3.5 39 88-126 11-49 (199)
121 1m7g_A Adenylylsulfate kinase; 98.6 4.3E-09 1.5E-13 85.5 0.4 77 88-164 11-88 (211)
122 2x8a_A Nuclear valosin-contain 98.6 3.6E-09 1.2E-13 90.0 -0.2 52 86-142 30-81 (274)
123 1ixz_A ATP-dependent metallopr 98.6 5E-09 1.7E-13 87.3 0.6 57 81-142 30-86 (254)
124 1pui_A ENGB, probable GTP-bind 98.6 7.6E-09 2.6E-13 83.0 1.4 48 76-126 3-50 (210)
125 2r6f_A Excinuclease ABC subuni 98.6 2.9E-08 9.8E-13 97.2 5.6 43 76-123 629-671 (972)
126 2rcn_A Probable GTPase ENGC; Y 98.6 2.5E-08 8.7E-13 88.1 4.8 62 91-155 205-269 (358)
127 1iy2_A ATP-dependent metallopr 98.6 6.5E-09 2.2E-13 88.0 0.5 58 80-142 53-110 (278)
128 2qag_C Septin-7; cell cycle, c 98.6 2.4E-08 8.1E-13 90.1 4.2 48 74-127 9-56 (418)
129 2vf7_A UVRA2, excinuclease ABC 98.6 1.6E-08 5.4E-13 98.2 3.2 47 75-126 501-548 (842)
130 1lvg_A Guanylate kinase, GMP k 98.6 3.2E-08 1.1E-12 79.9 4.5 28 100-127 2-29 (198)
131 2o8b_B DNA mismatch repair pro 98.6 3.1E-08 1E-12 98.2 4.9 51 75-126 749-812 (1022)
132 2w0m_A SSO2452; RECA, SSPF, un 98.6 2.7E-08 9.4E-13 80.6 3.6 46 88-133 8-55 (235)
133 1lw7_A Transcriptional regulat 98.6 1.1E-08 3.7E-13 90.2 1.2 62 92-156 158-233 (365)
134 3pih_A Uvrabc system protein A 98.6 3.5E-08 1.2E-12 96.6 4.8 31 89-119 597-627 (916)
135 1x6v_B Bifunctional 3'-phospho 98.6 3.9E-08 1.3E-12 92.7 4.9 98 79-176 25-130 (630)
136 2f1r_A Molybdopterin-guanine d 98.5 1.2E-08 4.2E-13 81.1 0.3 37 103-141 3-43 (171)
137 1knq_A Gluconate kinase; ALFA/ 98.5 6.3E-08 2.1E-12 75.9 3.9 51 100-155 6-59 (175)
138 1in4_A RUVB, holliday junction 98.5 3.9E-09 1.3E-13 92.0 -3.8 76 78-155 20-111 (334)
139 1m8p_A Sulfate adenylyltransfe 98.5 8.3E-08 2.8E-12 89.7 4.6 78 99-176 393-475 (573)
140 2bbw_A Adenylate kinase 4, AK4 98.5 7E-09 2.4E-13 86.2 -2.7 37 101-139 26-66 (246)
141 3tau_A Guanylate kinase, GMP k 98.4 1.9E-07 6.6E-12 75.7 5.4 29 100-128 6-34 (208)
142 2kjq_A DNAA-related protein; s 98.4 1.2E-07 4.1E-12 73.4 3.5 42 101-142 35-76 (149)
143 3thx_B DNA mismatch repair pro 98.4 8.3E-08 2.9E-12 94.0 2.8 38 88-125 659-696 (918)
144 1ewq_A DNA mismatch repair pro 98.4 1.7E-07 5.9E-12 90.2 4.8 42 88-132 565-608 (765)
145 1wb9_A DNA mismatch repair pro 98.4 1.5E-07 5.1E-12 91.1 4.2 39 87-126 593-631 (800)
146 1rz3_A Hypothetical protein rb 98.4 1.4E-07 5E-12 76.0 3.4 35 98-132 18-53 (201)
147 2vp4_A Deoxynucleoside kinase; 98.4 9.7E-08 3.3E-12 78.7 2.3 40 97-141 15-54 (230)
148 1zu4_A FTSY; GTPase, signal re 98.4 2.1E-07 7.1E-12 81.0 4.3 47 93-141 96-143 (320)
149 1pzn_A RAD51, DNA repair and r 98.4 1.1E-07 3.8E-12 83.6 2.2 51 90-141 118-176 (349)
150 2ygr_A Uvrabc system protein A 98.4 2.2E-07 7.6E-12 91.3 4.4 43 76-123 647-689 (993)
151 3ec2_A DNA replication protein 98.3 1.2E-07 4E-12 74.8 2.0 43 96-138 32-75 (180)
152 1e69_A Chromosome segregation 98.3 4.5E-07 1.5E-11 78.5 4.8 33 93-126 16-48 (322)
153 1ls1_A Signal recognition part 98.3 2E-07 6.9E-12 80.1 2.5 58 79-142 79-137 (295)
154 3thx_A DNA mismatch repair pro 98.3 2.9E-07 1E-11 90.4 3.9 35 88-122 648-682 (934)
155 3tqc_A Pantothenate kinase; bi 98.3 6.6E-08 2.3E-12 84.3 -1.2 50 83-132 67-125 (321)
156 1n0w_A DNA repair protein RAD5 98.2 8.9E-07 3E-11 72.3 5.0 40 99-140 21-68 (243)
157 1svm_A Large T antigen; AAA+ f 98.2 2.2E-07 7.4E-12 82.7 1.4 42 89-132 156-197 (377)
158 3qf7_A RAD50; ABC-ATPase, ATPa 98.2 6.1E-07 2.1E-11 79.2 4.3 37 89-126 11-47 (365)
159 1cke_A CK, MSSA, protein (cyti 98.2 1.2E-07 4.2E-12 77.1 -0.3 31 102-132 5-39 (227)
160 1vma_A Cell division protein F 98.2 5.9E-07 2E-11 77.7 3.8 46 94-141 96-142 (306)
161 2o5v_A DNA replication and rep 98.2 1.1E-06 3.8E-11 77.6 5.5 36 88-124 13-48 (359)
162 1tf7_A KAIC; homohexamer, hexa 98.2 4.9E-07 1.7E-11 83.4 3.3 36 96-131 275-310 (525)
163 1kag_A SKI, shikimate kinase I 98.2 5.6E-07 1.9E-11 70.0 3.0 49 101-154 3-52 (173)
164 3k1j_A LON protease, ATP-depen 98.2 8.3E-07 2.8E-11 83.2 4.0 72 85-159 43-116 (604)
165 1nij_A Hypothetical protein YJ 98.2 5.3E-07 1.8E-11 78.1 2.2 38 103-142 5-51 (318)
166 3ney_A 55 kDa erythrocyte memb 98.2 9.5E-07 3.2E-11 71.8 3.6 32 96-127 13-44 (197)
167 2p67_A LAO/AO transport system 98.1 2.1E-07 7.1E-12 81.4 -1.2 56 77-132 31-87 (341)
168 1w1w_A Structural maintenance 98.1 1.6E-06 5.5E-11 77.8 4.5 45 77-127 7-51 (430)
169 2qt1_A Nicotinamide riboside k 98.1 1.3E-06 4.3E-11 70.3 3.3 31 97-127 16-46 (207)
170 3m6a_A ATP-dependent protease 98.1 2.7E-07 9.2E-12 85.6 -1.1 57 79-138 86-143 (543)
171 2cvh_A DNA repair and recombin 98.1 1.3E-06 4.3E-11 70.3 2.9 48 90-140 7-55 (220)
172 3lda_A DNA repair protein RAD5 98.0 2.4E-06 8.1E-11 76.5 3.9 43 98-141 174-223 (400)
173 1udx_A The GTP-binding protein 98.0 1.4E-06 4.9E-11 78.4 2.3 36 91-126 146-181 (416)
174 4eaq_A DTMP kinase, thymidylat 98.0 2.5E-06 8.6E-11 70.5 3.6 42 91-132 12-56 (229)
175 1nlf_A Regulatory protein REPA 98.0 4.1E-06 1.4E-10 70.7 4.8 29 99-127 27-55 (279)
176 1oix_A RAS-related protein RAB 98.0 4.2E-06 1.4E-10 66.4 3.9 36 104-141 31-78 (191)
177 2p5t_B PEZT; postsegregational 98.0 3.4E-06 1.2E-10 70.4 3.3 43 98-143 28-70 (253)
178 3t61_A Gluconokinase; PSI-biol 97.9 4E-06 1.4E-10 67.1 3.0 37 101-142 17-53 (202)
179 1y63_A LMAJ004144AAA protein; 97.9 5.3E-06 1.8E-10 65.7 3.5 32 94-125 2-33 (184)
180 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 8.3E-06 2.8E-10 62.9 4.4 32 94-126 16-47 (149)
181 3hr8_A Protein RECA; alpha and 97.9 6.8E-06 2.3E-10 72.5 4.2 55 99-154 58-114 (356)
182 2px0_A Flagellar biosynthesis 97.9 7.6E-06 2.6E-10 70.3 4.2 40 100-139 103-143 (296)
183 1sxj_E Activator 1 40 kDa subu 97.9 5.2E-06 1.8E-10 71.7 3.2 36 105-142 39-76 (354)
184 2qor_A Guanylate kinase; phosp 97.9 5.6E-06 1.9E-10 66.5 3.0 29 99-127 9-37 (204)
185 1ni3_A YCHF GTPase, YCHF GTP-b 97.9 7.3E-06 2.5E-10 73.2 4.0 39 99-139 17-68 (392)
186 2dr3_A UPF0273 protein PH0284; 97.9 6.1E-06 2.1E-10 67.4 3.2 50 89-139 9-60 (247)
187 1jjv_A Dephospho-COA kinase; P 97.9 5.7E-06 1.9E-10 66.3 2.6 32 104-141 4-35 (206)
188 2gks_A Bifunctional SAT/APS ki 97.8 7.9E-06 2.7E-10 75.9 3.7 65 100-164 370-434 (546)
189 2ffh_A Protein (FFH); SRP54, s 97.8 6E-06 2.1E-10 74.5 2.6 47 82-132 82-129 (425)
190 1qhx_A CPT, protein (chloramph 97.8 1E-05 3.5E-10 63.0 3.5 26 102-127 3-28 (178)
191 1odf_A YGR205W, hypothetical 3 97.8 9.1E-06 3.1E-10 69.6 3.5 29 100-128 29-57 (290)
192 2f9l_A RAB11B, member RAS onco 97.8 1.3E-05 4.3E-10 63.7 3.7 23 104-126 7-29 (199)
193 2dhr_A FTSH; AAA+ protein, hex 97.8 1E-05 3.5E-10 74.4 3.5 52 86-142 50-101 (499)
194 3ice_A Transcription terminati 97.8 8.6E-06 2.9E-10 72.7 2.8 52 75-126 132-198 (422)
195 3cm0_A Adenylate kinase; ATP-b 97.7 1.4E-05 4.9E-10 62.6 3.1 27 100-126 2-28 (186)
196 2if2_A Dephospho-COA kinase; a 97.7 1.7E-05 5.7E-10 63.3 3.3 21 104-124 3-23 (204)
197 2www_A Methylmalonic aciduria 97.7 1.9E-05 6.5E-10 69.2 3.9 34 100-133 72-106 (349)
198 4ad8_A DNA repair protein RECN 97.7 8.8E-06 3E-10 74.8 1.6 36 89-125 48-83 (517)
199 2vf7_A UVRA2, excinuclease ABC 97.7 2.2E-05 7.4E-10 76.3 4.1 30 90-119 24-53 (842)
200 3kb2_A SPBC2 prophage-derived 97.7 2E-05 6.9E-10 60.7 3.1 23 104-126 3-25 (173)
201 1sxj_C Activator 1 40 kDa subu 97.6 5.4E-06 1.8E-10 71.8 -0.6 42 86-127 28-71 (340)
202 1j8m_F SRP54, signal recogniti 97.6 1.9E-05 6.4E-10 67.9 2.7 39 93-132 89-129 (297)
203 2ygr_A Uvrabc system protein A 97.6 3E-05 1E-09 76.3 4.0 30 90-119 34-63 (993)
204 3qks_A DNA double-strand break 97.6 4.2E-05 1.4E-09 61.8 4.2 32 94-126 16-47 (203)
205 1uf9_A TT1252 protein; P-loop, 97.6 2.5E-05 8.4E-10 61.9 2.7 35 101-141 7-41 (203)
206 2r6f_A Excinuclease ABC subuni 97.6 3.1E-05 1.1E-09 76.0 3.9 31 89-119 31-61 (972)
207 1ypw_A Transitional endoplasmi 97.6 0.0001 3.5E-09 71.3 7.5 43 97-142 233-275 (806)
208 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 3.5E-05 1.2E-09 64.4 3.7 43 101-143 3-45 (260)
209 2ga8_A Hypothetical 39.9 kDa p 97.6 1E-05 3.5E-10 71.3 0.4 37 90-126 10-48 (359)
210 2rhm_A Putative kinase; P-loop 97.6 3.3E-05 1.1E-09 60.7 3.2 39 100-143 3-41 (193)
211 1kht_A Adenylate kinase; phosp 97.6 3.5E-05 1.2E-09 60.3 3.3 29 102-130 3-31 (192)
212 3pih_A Uvrabc system protein A 97.6 2.8E-05 9.4E-10 76.2 3.2 30 90-119 12-41 (916)
213 3t34_A Dynamin-related protein 97.6 4E-05 1.4E-09 67.0 3.6 34 89-125 24-57 (360)
214 1gvn_B Zeta; postsegregational 97.6 4.6E-05 1.6E-09 64.9 3.8 41 99-142 30-70 (287)
215 2plr_A DTMP kinase, probable t 97.5 5.3E-05 1.8E-09 60.2 3.8 32 101-132 3-34 (213)
216 3qkt_A DNA double-strand break 97.5 4.9E-05 1.7E-09 66.1 3.7 31 95-126 17-47 (339)
217 1q3t_A Cytidylate kinase; nucl 97.5 4.7E-05 1.6E-09 62.5 3.4 28 99-126 13-40 (236)
218 3trf_A Shikimate kinase, SK; a 97.5 4.7E-05 1.6E-09 59.6 3.3 26 101-126 4-29 (185)
219 2zr9_A Protein RECA, recombina 97.5 6.2E-05 2.1E-09 66.0 4.3 42 98-140 57-99 (349)
220 3lw7_A Adenylate kinase relate 97.5 4.9E-05 1.7E-09 58.1 3.2 19 104-122 3-21 (179)
221 1np6_A Molybdopterin-guanine d 97.5 5.1E-05 1.7E-09 60.2 3.0 27 102-128 6-32 (174)
222 1via_A Shikimate kinase; struc 97.5 5.2E-05 1.8E-09 59.1 2.9 33 104-141 6-38 (175)
223 3iij_A Coilin-interacting nucl 97.5 3.7E-05 1.3E-09 60.1 2.1 27 100-126 9-35 (180)
224 1nn5_A Similar to deoxythymidy 97.5 5.5E-05 1.9E-09 60.4 3.1 31 100-130 7-37 (215)
225 2v54_A DTMP kinase, thymidylat 97.5 7.1E-05 2.4E-09 59.4 3.7 26 101-126 3-28 (204)
226 2wwf_A Thymidilate kinase, put 97.5 6.4E-05 2.2E-09 60.0 3.4 28 100-127 8-35 (212)
227 3r20_A Cytidylate kinase; stru 97.5 6E-05 2E-09 62.6 3.2 26 101-126 8-33 (233)
228 1g8f_A Sulfate adenylyltransfe 97.4 6.7E-05 2.3E-09 69.1 3.8 42 99-140 392-435 (511)
229 1ly1_A Polynucleotide kinase; 97.4 7.6E-05 2.6E-09 57.8 3.5 36 103-142 3-38 (181)
230 2gj8_A MNME, tRNA modification 97.4 7.3E-05 2.5E-09 58.1 3.4 27 100-126 2-28 (172)
231 1f6b_A SAR1; gtpases, N-termin 97.4 2.1E-05 7E-10 62.7 0.1 40 84-124 7-47 (198)
232 2c95_A Adenylate kinase 1; tra 97.4 7.6E-05 2.6E-09 58.7 3.4 27 100-126 7-33 (196)
233 1vht_A Dephospho-COA kinase; s 97.4 8.2E-05 2.8E-09 60.0 3.6 24 101-124 3-26 (218)
234 2jaq_A Deoxyguanosine kinase; 97.4 7E-05 2.4E-09 59.2 3.2 23 104-126 2-24 (205)
235 1nks_A Adenylate kinase; therm 97.4 7.4E-05 2.5E-09 58.4 3.3 34 104-137 3-36 (194)
236 2ze6_A Isopentenyl transferase 97.4 7.1E-05 2.4E-09 62.5 3.2 23 104-126 3-25 (253)
237 1gtv_A TMK, thymidylate kinase 97.4 4E-05 1.4E-09 61.3 1.6 27 104-130 2-28 (214)
238 1lv7_A FTSH; alpha/beta domain 97.4 6.4E-05 2.2E-09 62.2 2.8 45 92-141 37-81 (257)
239 1tev_A UMP-CMP kinase; ploop, 97.4 8.4E-05 2.9E-09 58.2 3.3 26 101-126 2-27 (196)
240 2z0h_A DTMP kinase, thymidylat 97.4 7.3E-05 2.5E-09 58.8 3.0 29 104-132 2-30 (197)
241 2vli_A Antibiotic resistance p 97.4 5.5E-05 1.9E-09 59.0 2.2 27 100-126 3-29 (183)
242 1ega_A Protein (GTP-binding pr 97.4 6.3E-05 2.2E-09 64.4 2.7 27 100-126 6-32 (301)
243 3ake_A Cytidylate kinase; CMP 97.3 0.0001 3.4E-09 58.6 3.1 23 104-126 4-26 (208)
244 2bwj_A Adenylate kinase 5; pho 97.3 8.8E-05 3E-09 58.5 2.6 28 99-126 9-36 (199)
245 1m2o_B GTP-binding protein SAR 97.3 0.00012 4.3E-09 57.6 3.4 34 90-124 12-45 (190)
246 1ex7_A Guanylate kinase; subst 97.3 0.00011 3.9E-09 58.8 3.1 23 105-127 4-26 (186)
247 2pbr_A DTMP kinase, thymidylat 97.3 0.00011 3.9E-09 57.5 3.0 29 104-132 2-30 (195)
248 1xjc_A MOBB protein homolog; s 97.3 0.00013 4.3E-09 57.8 3.0 28 103-130 5-32 (169)
249 1zuh_A Shikimate kinase; alpha 97.3 0.00014 4.7E-09 56.2 3.2 25 102-126 7-31 (168)
250 3zvl_A Bifunctional polynucleo 97.3 0.00084 2.9E-08 60.0 8.8 40 97-141 253-292 (416)
251 2qtf_A Protein HFLX, GTP-bindi 97.3 0.00021 7.2E-09 63.0 4.7 48 104-155 181-240 (364)
252 1aky_A Adenylate kinase; ATP:A 97.3 0.00016 5.4E-09 58.5 3.5 27 100-126 2-28 (220)
253 2iyv_A Shikimate kinase, SK; t 97.2 0.00012 3.9E-09 57.4 2.5 24 103-126 3-26 (184)
254 1e6c_A Shikimate kinase; phosp 97.2 0.00013 4.3E-09 56.3 2.6 24 103-126 3-26 (173)
255 2r6a_A DNAB helicase, replicat 97.2 0.00011 3.6E-09 66.5 2.5 44 89-132 190-235 (454)
256 2dy1_A Elongation factor G; tr 97.2 0.0001 3.5E-09 69.9 2.5 37 96-132 3-42 (665)
257 2cdn_A Adenylate kinase; phosp 97.2 0.00017 6E-09 57.3 3.5 27 100-126 18-44 (201)
258 4fcw_A Chaperone protein CLPB; 97.2 5E-05 1.7E-09 64.2 0.2 35 103-138 48-83 (311)
259 1a7j_A Phosphoribulokinase; tr 97.2 6.9E-05 2.4E-09 64.0 1.1 41 101-142 4-45 (290)
260 2wji_A Ferrous iron transport 97.2 0.00018 6E-09 55.2 3.3 23 104-126 5-27 (165)
261 1mky_A Probable GTP-binding pr 97.2 0.00024 8.3E-09 63.8 4.4 23 104-126 182-204 (439)
262 2qag_A Septin-2, protein NEDD5 97.2 4.8E-05 1.7E-09 66.9 -0.2 45 76-126 17-61 (361)
263 1zd8_A GTP:AMP phosphotransfer 97.2 0.00019 6.4E-09 58.4 3.3 27 100-126 5-31 (227)
264 2pt5_A Shikimate kinase, SK; a 97.2 0.00019 6.5E-09 55.1 3.2 23 104-126 2-24 (168)
265 1qf9_A UMP/CMP kinase, protein 97.2 0.00018 6.2E-09 56.1 3.1 26 101-126 5-30 (194)
266 1ukz_A Uridylate kinase; trans 97.2 0.0002 6.9E-09 56.9 3.3 27 100-126 13-39 (203)
267 2ius_A DNA translocase FTSK; n 97.2 0.00041 1.4E-08 63.9 5.7 47 93-139 158-208 (512)
268 3bos_A Putative DNA replicatio 97.2 0.00028 9.5E-09 56.7 4.0 41 101-141 51-91 (242)
269 1zak_A Adenylate kinase; ATP:A 97.2 0.00017 5.9E-09 58.3 2.8 26 101-126 4-29 (222)
270 3fb4_A Adenylate kinase; psych 97.1 0.00021 7.3E-09 57.3 3.1 23 104-126 2-24 (216)
271 3cf0_A Transitional endoplasmi 97.1 0.00019 6.5E-09 61.1 2.7 29 98-126 45-73 (301)
272 3auy_A DNA double-strand break 97.1 0.00029 9.9E-09 61.9 3.9 31 93-124 17-47 (371)
273 2zej_A Dardarin, leucine-rich 97.1 0.00023 8E-09 55.5 2.9 22 104-125 4-25 (184)
274 1uj2_A Uridine-cytidine kinase 97.1 0.00028 9.7E-09 58.4 3.5 27 100-126 20-46 (252)
275 3dl0_A Adenylate kinase; phosp 97.1 0.00027 9.2E-09 56.8 3.2 23 104-126 2-24 (216)
276 4edh_A DTMP kinase, thymidylat 97.1 0.00031 1.1E-08 57.3 3.6 32 100-131 4-35 (213)
277 3tlx_A Adenylate kinase 2; str 97.1 0.0003 1E-08 58.2 3.4 27 100-126 27-53 (243)
278 2wjg_A FEOB, ferrous iron tran 97.1 0.00032 1.1E-08 54.4 3.4 22 104-125 9-30 (188)
279 2grj_A Dephospho-COA kinase; T 97.0 0.00034 1.2E-08 56.1 3.3 26 101-126 11-36 (192)
280 3kl4_A SRP54, signal recogniti 97.0 0.00029 9.8E-09 63.6 3.1 32 101-132 96-128 (433)
281 1v5w_A DMC1, meiotic recombina 97.0 0.0007 2.4E-08 58.9 5.2 42 98-140 118-166 (343)
282 2z43_A DNA repair and recombin 97.0 0.00077 2.6E-08 58.1 5.2 42 98-140 103-151 (324)
283 3lv8_A DTMP kinase, thymidylat 97.0 0.00038 1.3E-08 57.8 3.1 31 100-130 25-55 (236)
284 3be4_A Adenylate kinase; malar 97.0 0.00038 1.3E-08 56.2 3.1 26 101-126 4-29 (217)
285 2w58_A DNAI, primosome compone 97.0 0.00058 2E-08 54.1 4.0 28 103-130 55-82 (202)
286 2f6r_A COA synthase, bifunctio 96.9 0.00043 1.5E-08 58.6 3.3 24 101-124 74-97 (281)
287 2ce7_A Cell division protein F 96.9 0.00029 9.9E-09 64.3 2.4 36 89-126 38-73 (476)
288 4tmk_A Protein (thymidylate ki 96.9 0.00043 1.5E-08 56.5 3.2 30 101-130 2-31 (213)
289 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00036 1.2E-08 62.3 2.8 27 99-125 19-45 (396)
290 2xb4_A Adenylate kinase; ATP-b 96.9 0.00048 1.7E-08 56.0 3.2 23 104-126 2-24 (223)
291 4ag6_A VIRB4 ATPase, type IV s 96.9 0.00055 1.9E-08 60.3 3.6 36 101-137 34-70 (392)
292 3umf_A Adenylate kinase; rossm 96.9 0.00048 1.6E-08 56.5 3.0 29 98-126 25-53 (217)
293 1fnn_A CDC6P, cell division co 96.9 0.00089 3E-08 57.9 4.7 38 100-137 40-80 (389)
294 1ak2_A Adenylate kinase isoenz 96.9 0.00062 2.1E-08 55.6 3.5 27 100-126 14-40 (233)
295 1ltq_A Polynucleotide kinase; 96.8 0.00061 2.1E-08 57.4 3.5 36 103-142 3-38 (301)
296 2h92_A Cytidylate kinase; ross 96.8 0.00052 1.8E-08 55.1 2.9 25 102-126 3-27 (219)
297 1e4v_A Adenylate kinase; trans 96.8 0.00059 2E-08 54.8 3.0 23 104-126 2-24 (214)
298 2qby_A CDC6 homolog 1, cell di 96.8 0.00052 1.8E-08 59.1 2.8 28 100-127 43-70 (386)
299 3lxx_A GTPase IMAP family memb 96.8 0.00062 2.1E-08 55.6 3.2 23 104-126 31-53 (239)
300 3a8t_A Adenylate isopentenyltr 96.8 0.00076 2.6E-08 59.0 3.7 28 100-127 38-65 (339)
301 3ld9_A DTMP kinase, thymidylat 96.8 0.00074 2.5E-08 55.6 3.4 32 99-130 18-50 (223)
302 1jbk_A CLPB protein; beta barr 96.8 0.00084 2.9E-08 51.5 3.4 28 100-127 41-68 (195)
303 1ko7_A HPR kinase/phosphatase; 96.8 0.001 3.5E-08 57.5 4.3 35 89-124 132-166 (314)
304 3v9p_A DTMP kinase, thymidylat 96.7 0.00061 2.1E-08 56.2 2.6 29 100-128 23-51 (227)
305 3b9p_A CG5977-PA, isoform A; A 96.7 0.00084 2.9E-08 56.4 3.6 27 100-126 52-78 (297)
306 2ocp_A DGK, deoxyguanosine kin 96.7 0.00088 3E-08 54.9 3.4 27 101-127 1-27 (241)
307 1njg_A DNA polymerase III subu 96.7 0.00027 9.3E-09 56.2 0.3 24 104-127 47-70 (250)
308 3d3q_A TRNA delta(2)-isopenten 96.7 0.0008 2.8E-08 58.8 3.2 25 103-127 8-32 (340)
309 1l8q_A Chromosomal replication 96.7 0.00074 2.5E-08 57.7 2.9 39 101-139 36-74 (324)
310 1u94_A RECA protein, recombina 96.7 0.0012 4.2E-08 58.0 4.2 41 99-139 60-100 (356)
311 3k53_A Ferrous iron transport 96.7 0.00086 2.9E-08 56.0 3.0 23 104-126 5-27 (271)
312 2qmh_A HPR kinase/phosphorylas 96.7 0.0015 5.2E-08 53.0 4.3 27 100-126 32-58 (205)
313 3dm5_A SRP54, signal recogniti 96.6 0.0015 5.2E-08 59.1 4.5 41 101-141 99-139 (443)
314 2ged_A SR-beta, signal recogni 96.6 0.0011 3.7E-08 51.6 3.2 24 103-126 49-72 (193)
315 3exa_A TRNA delta(2)-isopenten 96.6 0.0012 4.2E-08 57.2 3.8 26 102-127 3-28 (322)
316 1p5z_B DCK, deoxycytidine kina 96.6 0.00072 2.5E-08 56.2 2.2 27 100-126 22-48 (263)
317 1z2a_A RAS-related protein RAB 96.6 0.0012 4E-08 49.8 3.1 23 104-126 7-29 (168)
318 3tmk_A Thymidylate kinase; pho 96.6 0.0012 4E-08 54.1 3.3 33 100-132 3-35 (216)
319 3bh0_A DNAB-like replicative h 96.6 0.002 6.9E-08 55.3 4.9 42 89-130 55-96 (315)
320 3h4m_A Proteasome-activating n 96.6 0.0013 4.3E-08 54.9 3.4 27 100-126 49-75 (285)
321 2ce2_X GTPase HRAS; signaling 96.6 0.0012 4.2E-08 49.3 3.0 23 104-126 5-27 (166)
322 3llm_A ATP-dependent RNA helic 96.6 0.00092 3.1E-08 54.6 2.5 26 99-124 73-98 (235)
323 3crm_A TRNA delta(2)-isopenten 96.6 0.0012 4.1E-08 57.4 3.3 24 103-126 6-29 (323)
324 1kao_A RAP2A; GTP-binding prot 96.6 0.0013 4.5E-08 49.3 3.2 22 104-125 5-26 (167)
325 2dyk_A GTP-binding protein; GT 96.6 0.0013 4.6E-08 49.2 3.2 23 104-126 3-25 (161)
326 2nzj_A GTP-binding protein REM 96.5 0.0013 4.4E-08 50.0 3.1 23 104-126 6-28 (175)
327 2p65_A Hypothetical protein PF 96.5 0.0011 3.7E-08 50.9 2.5 27 101-127 42-68 (187)
328 2erx_A GTP-binding protein DI- 96.5 0.0014 4.8E-08 49.5 3.2 22 104-125 5-26 (172)
329 1u8z_A RAS-related protein RAL 96.5 0.0014 4.8E-08 49.2 3.1 22 104-125 6-27 (168)
330 3q72_A GTP-binding protein RAD 96.5 0.0011 3.8E-08 50.0 2.5 23 104-126 4-26 (166)
331 1z0j_A RAB-22, RAS-related pro 96.5 0.0015 5.2E-08 49.3 3.2 23 104-126 8-30 (170)
332 1ek0_A Protein (GTP-binding pr 96.5 0.0015 5.1E-08 49.2 3.1 23 104-126 5-27 (170)
333 1ky3_A GTP-binding protein YPT 96.5 0.0015 5.2E-08 49.8 3.2 23 104-126 10-32 (182)
334 1z08_A RAS-related protein RAB 96.5 0.0015 5.3E-08 49.3 3.2 22 104-125 8-29 (170)
335 2lkc_A Translation initiation 96.5 0.0019 6.5E-08 49.3 3.7 26 100-125 6-31 (178)
336 3q85_A GTP-binding protein REM 96.5 0.0015 5.1E-08 49.4 3.0 22 104-125 4-25 (169)
337 1g16_A RAS-related protein SEC 96.5 0.0015 5.1E-08 49.3 3.0 23 104-126 5-27 (170)
338 1c1y_A RAS-related protein RAP 96.5 0.0016 5.5E-08 49.0 3.1 22 104-125 5-26 (167)
339 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0016 5.6E-08 49.6 3.2 23 104-126 9-31 (177)
340 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0018 6.3E-08 53.0 3.7 27 100-126 37-63 (262)
341 3sr0_A Adenylate kinase; phosp 96.5 0.0016 5.3E-08 52.8 3.1 23 104-126 2-24 (206)
342 2fn4_A P23, RAS-related protei 96.4 0.0016 5.6E-08 49.6 3.1 22 104-125 11-32 (181)
343 1sxj_D Activator 1 41 kDa subu 96.4 0.00076 2.6E-08 57.7 1.2 36 91-126 45-82 (353)
344 3fdi_A Uncharacterized protein 96.4 0.0016 5.6E-08 52.3 3.1 24 103-126 7-30 (201)
345 3tw8_B RAS-related protein RAB 96.4 0.0015 5.1E-08 49.8 2.7 22 104-125 11-32 (181)
346 1fzq_A ADP-ribosylation factor 96.4 0.0014 4.8E-08 50.9 2.5 23 103-125 17-39 (181)
347 3tqf_A HPR(Ser) kinase; transf 96.4 0.0029 1E-07 50.3 4.3 28 97-124 11-38 (181)
348 3pqc_A Probable GTP-binding pr 96.4 0.0016 5.4E-08 50.4 2.8 23 104-126 25-47 (195)
349 1svi_A GTP-binding protein YSX 96.4 0.0016 5.4E-08 50.7 2.8 23 103-125 24-46 (195)
350 3n70_A Transport activator; si 96.4 0.0022 7.5E-08 48.4 3.5 29 100-128 22-50 (145)
351 1r2q_A RAS-related protein RAB 96.4 0.0019 6.4E-08 48.6 3.1 22 104-125 8-29 (170)
352 2orw_A Thymidine kinase; TMTK, 96.4 0.0029 1E-07 50.1 4.3 24 101-124 2-25 (184)
353 4a1f_A DNAB helicase, replicat 96.4 0.0017 5.8E-08 56.7 3.1 49 90-138 34-82 (338)
354 3clv_A RAB5 protein, putative; 96.4 0.002 6.7E-08 49.9 3.2 22 104-125 9-30 (208)
355 4dsu_A GTPase KRAS, isoform 2B 96.4 0.002 6.8E-08 49.6 3.2 23 104-126 6-28 (189)
356 3foz_A TRNA delta(2)-isopenten 96.4 0.0021 7.1E-08 55.6 3.6 26 102-127 10-35 (316)
357 3bc1_A RAS-related protein RAB 96.4 0.002 6.7E-08 49.7 3.1 22 104-125 13-34 (195)
358 1upt_A ARL1, ADP-ribosylation 96.4 0.002 6.9E-08 48.7 3.1 23 103-125 8-30 (171)
359 3b1v_A Ferrous iron uptake tra 96.4 0.002 6.8E-08 54.3 3.3 23 104-126 5-27 (272)
360 2zts_A Putative uncharacterize 96.3 0.0027 9.2E-08 51.4 4.0 26 99-124 27-52 (251)
361 2hxs_A RAB-26, RAS-related pro 96.3 0.0022 7.5E-08 48.9 3.3 22 104-125 8-29 (178)
362 1g41_A Heat shock protein HSLU 96.3 0.0046 1.6E-07 55.9 5.8 53 104-164 52-104 (444)
363 2cxx_A Probable GTP-binding pr 96.3 0.0018 6.1E-08 50.0 2.7 22 105-126 4-25 (190)
364 2i1q_A DNA repair and recombin 96.3 0.0024 8.3E-08 54.6 3.8 28 98-125 94-121 (322)
365 2oil_A CATX-8, RAS-related pro 96.3 0.0021 7.1E-08 50.1 3.1 23 104-126 27-49 (193)
366 3t1o_A Gliding protein MGLA; G 96.3 0.0021 7.1E-08 49.7 3.1 23 104-126 16-38 (198)
367 3lxw_A GTPase IMAP family memb 96.3 0.002 6.8E-08 53.3 3.1 23 104-126 23-45 (247)
368 1r8s_A ADP-ribosylation factor 96.3 0.0022 7.5E-08 48.2 3.1 21 105-125 3-23 (164)
369 2y8e_A RAB-protein 6, GH09086P 96.3 0.0021 7.3E-08 48.8 3.0 22 104-125 16-37 (179)
370 2a9k_A RAS-related protein RAL 96.3 0.0023 7.9E-08 49.0 3.1 22 104-125 20-41 (187)
371 2r62_A Cell division protease 96.3 0.00075 2.6E-08 55.9 0.3 29 96-126 40-68 (268)
372 2g6b_A RAS-related protein RAB 96.3 0.0023 8E-08 48.8 3.1 23 104-126 12-34 (180)
373 1z0f_A RAB14, member RAS oncog 96.3 0.0024 8.1E-08 48.6 3.1 23 104-126 17-39 (179)
374 3con_A GTPase NRAS; structural 96.3 0.0024 8.2E-08 49.5 3.1 23 104-126 23-45 (190)
375 2efe_B Small GTP-binding prote 96.2 0.0025 8.6E-08 48.7 3.2 23 104-126 14-36 (181)
376 1jal_A YCHF protein; nucleotid 96.2 0.0039 1.3E-07 54.9 4.7 22 103-124 3-24 (363)
377 1ypw_A Transitional endoplasmi 96.2 0.00087 3E-08 64.9 0.5 44 95-141 504-547 (806)
378 3ihw_A Centg3; RAS, centaurin, 96.2 0.0026 8.8E-08 49.6 3.2 22 104-125 22-43 (184)
379 3iev_A GTP-binding protein ERA 96.2 0.0026 8.8E-08 54.4 3.4 23 103-125 11-33 (308)
380 2b8t_A Thymidine kinase; deoxy 96.2 0.0034 1.2E-07 51.6 3.9 37 100-136 10-46 (223)
381 2wsm_A Hydrogenase expression/ 96.2 0.0027 9.2E-08 50.7 3.3 25 102-126 30-54 (221)
382 1moz_A ARL1, ADP-ribosylation 96.2 0.0014 4.8E-08 50.3 1.6 24 101-124 17-40 (183)
383 2bme_A RAB4A, RAS-related prot 96.2 0.0025 8.6E-08 49.0 3.0 23 104-126 12-34 (186)
384 1nrj_B SR-beta, signal recogni 96.2 0.0025 8.7E-08 50.6 3.1 23 104-126 14-36 (218)
385 1wf3_A GTP-binding protein; GT 96.2 0.0026 8.9E-08 54.3 3.4 22 104-125 9-30 (301)
386 3p32_A Probable GTPase RV1496/ 96.2 0.0032 1.1E-07 54.9 3.8 31 100-130 77-107 (355)
387 2dby_A GTP-binding protein; GD 96.2 0.0025 8.5E-08 56.2 3.1 22 105-126 4-25 (368)
388 4hlc_A DTMP kinase, thymidylat 96.2 0.003 1E-07 51.1 3.3 26 102-127 2-27 (205)
389 1m7b_A RND3/RHOE small GTP-bin 96.2 0.0027 9.4E-08 49.1 3.0 22 104-125 9-30 (184)
390 2bov_A RAla, RAS-related prote 96.2 0.0028 9.6E-08 49.6 3.1 22 104-125 16-37 (206)
391 3syl_A Protein CBBX; photosynt 96.2 0.0029 1E-07 53.2 3.4 28 100-127 65-92 (309)
392 1vg8_A RAS-related protein RAB 96.2 0.0029 1E-07 49.6 3.2 23 104-126 10-32 (207)
393 1mh1_A RAC1; GTP-binding, GTPa 96.2 0.0029 1E-07 48.5 3.1 22 104-125 7-28 (186)
394 2gf9_A RAS-related protein RAB 96.2 0.0029 9.9E-08 49.1 3.1 23 104-126 24-46 (189)
395 3t15_A Ribulose bisphosphate c 96.2 0.0029 9.9E-08 53.6 3.3 27 100-126 34-60 (293)
396 3tkl_A RAS-related protein RAB 96.1 0.0029 1E-07 49.1 3.1 23 104-126 18-40 (196)
397 2gf0_A GTP-binding protein DI- 96.1 0.0029 9.9E-08 49.2 3.1 22 104-125 10-31 (199)
398 3eph_A TRNA isopentenyltransfe 96.1 0.0029 9.9E-08 56.6 3.3 25 103-127 3-27 (409)
399 2fg5_A RAB-22B, RAS-related pr 96.1 0.003 1E-07 49.3 3.1 23 104-126 25-47 (192)
400 2v3c_C SRP54, signal recogniti 96.1 0.0017 5.7E-08 58.5 1.8 39 101-139 98-136 (432)
401 3t5d_A Septin-7; GTP-binding p 96.1 0.0024 8.2E-08 53.4 2.6 22 104-125 10-31 (274)
402 3kkq_A RAS-related protein M-R 96.1 0.0031 1.1E-07 48.4 3.1 23 104-126 20-42 (183)
403 2xtp_A GTPase IMAP family memb 96.1 0.003 1E-07 52.1 3.1 24 103-126 23-46 (260)
404 1z06_A RAS-related protein RAB 96.1 0.0033 1.1E-07 48.8 3.2 22 104-125 22-43 (189)
405 1ksh_A ARF-like protein 2; sma 96.1 0.003 1E-07 48.7 2.9 25 101-125 17-41 (186)
406 3cbq_A GTP-binding protein REM 96.1 0.0022 7.6E-08 50.6 2.1 22 104-125 25-46 (195)
407 3t5g_A GTP-binding protein RHE 96.1 0.0033 1.1E-07 48.2 3.0 21 104-124 8-28 (181)
408 1zbd_A Rabphilin-3A; G protein 96.1 0.0034 1.2E-07 49.2 3.1 23 104-126 10-32 (203)
409 3iby_A Ferrous iron transport 96.1 0.0034 1.2E-07 52.3 3.3 23 104-126 3-25 (256)
410 3oes_A GTPase rhebl1; small GT 96.1 0.0033 1.1E-07 49.5 3.0 24 103-126 25-48 (201)
411 2v1u_A Cell division control p 96.1 0.0029 1E-07 54.4 3.0 28 100-127 42-69 (387)
412 3dz8_A RAS-related protein RAB 96.0 0.0034 1.2E-07 48.9 3.0 23 104-126 25-47 (191)
413 2bjv_A PSP operon transcriptio 96.0 0.0045 1.5E-07 51.1 4.0 29 101-129 28-56 (265)
414 2a5j_A RAS-related protein RAB 96.0 0.0036 1.2E-07 48.8 3.1 23 104-126 23-45 (191)
415 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.0054 1.9E-07 52.7 4.5 27 100-126 43-69 (322)
416 2q6t_A DNAB replication FORK h 96.0 0.0046 1.6E-07 55.5 4.1 49 90-138 188-237 (444)
417 2e87_A Hypothetical protein PH 96.0 0.0033 1.1E-07 54.7 3.2 26 101-126 166-191 (357)
418 1xp8_A RECA protein, recombina 96.0 0.0047 1.6E-07 54.4 4.1 40 99-139 71-111 (366)
419 2chg_A Replication factor C sm 96.0 0.0034 1.2E-07 49.2 2.9 23 104-126 40-62 (226)
420 1x3s_A RAS-related protein RAB 96.0 0.0038 1.3E-07 48.3 3.1 23 104-126 17-39 (195)
421 2atv_A RERG, RAS-like estrogen 96.0 0.0038 1.3E-07 48.8 3.2 22 104-125 30-51 (196)
422 2cjw_A GTP-binding protein GEM 96.0 0.0037 1.3E-07 49.1 3.1 21 104-124 8-28 (192)
423 2axn_A 6-phosphofructo-2-kinas 96.0 0.0036 1.2E-07 57.6 3.4 43 100-142 33-75 (520)
424 1zj6_A ADP-ribosylation factor 96.0 0.0037 1.3E-07 48.4 3.0 24 102-125 16-39 (187)
425 2ew1_A RAS-related protein RAB 96.0 0.0037 1.3E-07 49.7 3.0 23 104-126 28-50 (201)
426 2il1_A RAB12; G-protein, GDP, 96.0 0.0032 1.1E-07 49.2 2.6 23 104-126 28-50 (192)
427 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0037 1.3E-07 49.2 3.0 23 104-126 10-32 (206)
428 1zd9_A ADP-ribosylation factor 96.0 0.004 1.4E-07 48.4 3.1 22 104-125 24-45 (188)
429 4bas_A ADP-ribosylation factor 96.0 0.0034 1.2E-07 48.8 2.7 24 103-126 18-41 (199)
430 2o52_A RAS-related protein RAB 96.0 0.0037 1.3E-07 49.2 2.9 22 104-125 27-48 (200)
431 3reg_A RHO-like small GTPase; 96.0 0.004 1.4E-07 48.5 3.1 23 104-126 25-47 (194)
432 3bwd_D RAC-like GTP-binding pr 96.0 0.0051 1.7E-07 47.0 3.6 24 103-126 9-32 (182)
433 3cph_A RAS-related protein SEC 95.9 0.0041 1.4E-07 49.0 3.1 23 103-125 21-43 (213)
434 2p5s_A RAS and EF-hand domain 95.9 0.0041 1.4E-07 48.8 3.1 25 102-126 28-52 (199)
435 2z4s_A Chromosomal replication 95.9 0.0033 1.1E-07 56.5 2.8 25 102-126 130-154 (440)
436 4dhe_A Probable GTP-binding pr 95.9 0.0019 6.6E-08 51.5 1.1 23 103-125 30-52 (223)
437 1d2n_A N-ethylmaleimide-sensit 95.9 0.0042 1.4E-07 51.5 3.3 27 100-126 62-88 (272)
438 2h17_A ADP-ribosylation factor 95.9 0.0035 1.2E-07 48.4 2.6 22 104-125 23-44 (181)
439 3hws_A ATP-dependent CLP prote 95.9 0.0037 1.3E-07 54.3 3.0 26 101-126 50-75 (363)
440 2fv8_A H6, RHO-related GTP-bin 95.9 0.0042 1.4E-07 49.1 3.1 22 104-125 27-48 (207)
441 2qu8_A Putative nucleolar GTP- 95.9 0.0039 1.3E-07 50.2 2.9 24 103-126 30-53 (228)
442 2h57_A ADP-ribosylation factor 95.9 0.0029 1E-07 49.1 2.1 24 103-126 22-45 (190)
443 3a1s_A Iron(II) transport prot 95.9 0.0043 1.5E-07 51.7 3.2 23 104-126 7-29 (258)
444 3i8s_A Ferrous iron transport 95.9 0.0041 1.4E-07 52.2 3.1 23 104-126 5-27 (274)
445 1sky_E F1-ATPase, F1-ATP synth 95.9 0.0049 1.7E-07 56.1 3.7 43 89-132 139-182 (473)
446 2f7s_A C25KG, RAS-related prot 95.9 0.0045 1.5E-07 49.1 3.1 23 104-126 27-49 (217)
447 1ofh_A ATP-dependent HSL prote 95.9 0.0039 1.3E-07 52.1 2.9 26 101-126 49-74 (310)
448 1gwn_A RHO-related GTP-binding 95.9 0.0044 1.5E-07 49.4 3.0 23 104-126 30-52 (205)
449 2iwr_A Centaurin gamma 1; ANK 95.9 0.0033 1.1E-07 48.0 2.2 22 104-125 9-30 (178)
450 3c5c_A RAS-like protein 12; GD 95.9 0.0047 1.6E-07 48.1 3.2 22 104-125 23-44 (187)
451 2qgz_A Helicase loader, putati 95.9 0.0059 2E-07 52.2 4.0 30 102-131 152-182 (308)
452 3hdt_A Putative kinase; struct 95.9 0.0039 1.3E-07 51.1 2.7 25 102-126 14-38 (223)
453 1jwy_B Dynamin A GTPase domain 95.9 0.0047 1.6E-07 52.2 3.3 23 104-126 26-48 (315)
454 2hf9_A Probable hydrogenase ni 95.9 0.0049 1.7E-07 49.3 3.3 25 103-127 39-63 (226)
455 2fh5_B SR-beta, signal recogni 95.9 0.0047 1.6E-07 48.9 3.1 23 104-126 9-31 (214)
456 2q3h_A RAS homolog gene family 95.8 0.0047 1.6E-07 48.3 3.0 23 103-125 21-43 (201)
457 3uk6_A RUVB-like 2; hexameric 95.8 0.0048 1.6E-07 53.2 3.3 28 100-127 68-95 (368)
458 1yrb_A ATP(GTP)binding protein 95.8 0.0073 2.5E-07 49.4 4.3 39 100-139 12-50 (262)
459 3llu_A RAS-related GTP-binding 95.8 0.0048 1.6E-07 48.3 3.0 23 104-126 22-44 (196)
460 2j1l_A RHO-related GTP-binding 95.8 0.0048 1.7E-07 49.2 3.0 22 104-125 36-57 (214)
461 2gco_A H9, RHO-related GTP-bin 95.8 0.005 1.7E-07 48.4 3.0 22 104-125 27-48 (201)
462 1bif_A 6-phosphofructo-2-kinas 95.8 0.0052 1.8E-07 55.6 3.4 28 100-127 37-64 (469)
463 2atx_A Small GTP binding prote 95.8 0.0053 1.8E-07 47.7 3.1 22 104-125 20-41 (194)
464 3gmt_A Adenylate kinase; ssgci 95.8 0.0049 1.7E-07 50.9 2.9 24 103-126 9-32 (230)
465 2fu5_C RAS-related protein RAB 95.8 0.0031 1.1E-07 48.4 1.6 22 104-125 10-31 (183)
466 2b6h_A ADP-ribosylation factor 95.7 0.0047 1.6E-07 48.4 2.6 24 102-125 29-52 (192)
467 3pvs_A Replication-associated 95.7 0.0018 6.1E-08 58.5 0.0 28 99-126 45-74 (447)
468 3eie_A Vacuolar protein sortin 95.7 0.0065 2.2E-07 52.0 3.6 27 100-126 49-75 (322)
469 2aka_B Dynamin-1; fusion prote 95.7 0.0052 1.8E-07 51.4 2.8 23 104-126 28-50 (299)
470 3d8b_A Fidgetin-like protein 1 95.7 0.0065 2.2E-07 52.8 3.5 27 100-126 115-141 (357)
471 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.0072 2.5E-07 52.5 3.6 28 98-125 119-146 (331)
472 2xxa_A Signal recognition part 95.6 0.0078 2.7E-07 54.1 3.9 41 100-140 98-139 (433)
473 3def_A T7I23.11 protein; chlor 95.6 0.0063 2.1E-07 50.5 3.1 23 104-126 38-60 (262)
474 3hjn_A DTMP kinase, thymidylat 95.6 0.0063 2.2E-07 48.7 3.0 29 104-132 2-30 (197)
475 2hup_A RAS-related protein RAB 95.6 0.0067 2.3E-07 47.8 3.1 23 104-126 31-53 (201)
476 3co5_A Putative two-component 95.6 0.0033 1.1E-07 47.3 1.2 26 101-126 26-51 (143)
477 4gzl_A RAS-related C3 botulinu 95.6 0.0068 2.3E-07 47.9 3.0 23 103-125 31-53 (204)
478 2qby_B CDC6 homolog 3, cell di 95.6 0.0071 2.4E-07 52.2 3.4 26 101-126 44-69 (384)
479 1h65_A Chloroplast outer envel 95.6 0.0065 2.2E-07 50.6 3.0 23 104-126 41-63 (270)
480 3io5_A Recombination and repai 95.6 0.0067 2.3E-07 52.7 3.1 40 99-140 26-68 (333)
481 3pfi_A Holliday junction ATP-d 95.5 0.0065 2.2E-07 51.8 3.0 24 103-126 56-79 (338)
482 3bgw_A DNAB-like replicative h 95.5 0.011 3.9E-07 53.2 4.7 48 91-138 186-233 (444)
483 1um8_A ATP-dependent CLP prote 95.5 0.0066 2.2E-07 52.9 3.0 25 102-126 72-96 (376)
484 3cpj_B GTP-binding protein YPT 95.5 0.0077 2.6E-07 48.2 3.2 23 104-126 15-37 (223)
485 2g3y_A GTP-binding protein GEM 95.5 0.0078 2.7E-07 48.6 3.1 21 104-124 39-59 (211)
486 3q3j_B RHO-related GTP-binding 95.5 0.0079 2.7E-07 48.0 3.1 22 104-125 29-50 (214)
487 2r44_A Uncharacterized protein 95.5 0.0016 5.6E-08 55.6 -1.1 35 93-127 37-71 (331)
488 4dcu_A GTP-binding protein ENG 95.5 0.0063 2.2E-07 54.8 2.7 23 104-126 25-47 (456)
489 4djt_A GTP-binding nuclear pro 95.4 0.0033 1.1E-07 50.0 0.6 22 104-125 13-34 (218)
490 2j0v_A RAC-like GTP-binding pr 95.4 0.0084 2.9E-07 47.3 3.0 22 104-125 11-32 (212)
491 4i1u_A Dephospho-COA kinase; s 95.4 0.009 3.1E-07 48.6 3.2 22 104-125 11-32 (210)
492 2x77_A ADP-ribosylation factor 95.4 0.005 1.7E-07 47.7 1.6 24 102-125 22-45 (189)
493 4b4t_K 26S protease regulatory 95.4 0.0097 3.3E-07 53.5 3.7 28 99-126 203-230 (428)
494 1xx6_A Thymidine kinase; NESG, 95.4 0.012 4E-07 47.1 3.8 32 100-131 6-37 (191)
495 4b4t_M 26S protease regulatory 95.4 0.0098 3.4E-07 53.6 3.7 28 99-126 212-239 (434)
496 1c9k_A COBU, adenosylcobinamid 95.4 0.0079 2.7E-07 47.8 2.7 22 104-125 1-22 (180)
497 4b4t_L 26S protease subunit RP 95.4 0.01 3.4E-07 53.6 3.7 28 99-126 212-239 (437)
498 2yc2_C IFT27, small RAB-relate 95.4 0.0032 1.1E-07 49.2 0.4 22 104-125 22-43 (208)
499 2j37_W Signal recognition part 95.3 0.0086 2.9E-07 55.0 3.2 39 100-138 99-137 (504)
500 2qp9_X Vacuolar protein sortin 95.3 0.0077 2.6E-07 52.4 2.8 27 100-126 82-108 (355)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.87 E-value=1.2e-22 Score=180.13 Aligned_cols=134 Identities=17% Similarity=0.115 Sum_probs=99.6
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccc----c--cccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR----H--GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~----~--~~~~ 147 (221)
.+++++|++++|+...+|+++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++. . ..++
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I--~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI--SLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE--EETTEEEESSSCBCCGGGS
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE--EECCEECcccccccchhhC
Confidence 3688999999999999999999999999999999999999999999999999 688999 89999883 2 3457
Q ss_pred cceeeccChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHH-------------HHHHHHHhhhcchhHHHh
Q 027590 148 DLSFKAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGT-------------QRAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 148 ~ig~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~ 213 (221)
.||||||+...... ++.+....+.... .......++++ ++...+||+|++||+.++
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~----------~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNG----------KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTS----------SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHc----------CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 89999998643222 4555554432100 00111112222 233456788999999999
Q ss_pred hhhhccC
Q 027590 214 LMIHMNH 220 (221)
Q Consensus 214 ~~~~~~~ 220 (221)
++...++
T Consensus 151 rAL~~~P 157 (359)
T 3fvq_A 151 RALAPDP 157 (359)
T ss_dssp HHHTTCC
T ss_pred HHHHcCC
Confidence 9887654
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.85 E-value=7.5e-23 Score=182.72 Aligned_cols=142 Identities=15% Similarity=0.059 Sum_probs=98.1
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceee
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFK 152 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v 152 (221)
.++++|+++.|+...+|+++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++.. ...+.||||
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I--~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL--FIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE--EETTEECTTCCGGGSCEEEE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEE--EECCEECCCCCHHHCCEEEE
Confidence 478899999999999999999999999999999999999999999999999 688999 899999864 345779999
Q ss_pred ccChHHHHH-HHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENIR-RIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~~-~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
||+...... ++.+...++.. .-.........+...... ....++...+||+|++||+.++++...+.
T Consensus 81 fQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~p~~LSGGqrQRVaiArAL~~~P 152 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-AHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTC-GGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred ecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence 998632211 34444333211 000000000000000000 01122334578889999999999876553
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.85 E-value=1.8e-22 Score=173.20 Aligned_cols=143 Identities=14% Similarity=0.105 Sum_probs=96.8
Q ss_pred cceeeeeeeEecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccc--c----ccc
Q 027590 75 TVAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR--H----GLN 146 (221)
Q Consensus 75 ~~~~~~~~~~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~--~----~~~ 146 (221)
++++++|++++|+. ..+|+++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++. . .++
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I--~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI--LFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EETTEECCCSHHHHHHHH
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEE--EECCEECCcccccHHHHh
Confidence 46889999999964 45999999999999999999999999999999999999 678999 89999883 1 356
Q ss_pred ccceeeccChHHHH--HHHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 147 RDLSFKAEDRVENI--RRIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 147 ~~ig~v~q~~~~~~--~~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+.|||+||++...+ .++.+...++.. ...........+...... .+..++...+||+|++||+.++++...++
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 78999999874221 134443333210 000000000000000000 01122334568889999999999877653
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.85 E-value=1.6e-22 Score=169.67 Aligned_cols=142 Identities=14% Similarity=0.031 Sum_probs=93.6
Q ss_pred eeeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc-------
Q 027590 77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG------- 144 (221)
Q Consensus 77 ~~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~------- 144 (221)
++++|++++|+. ..+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|.++...
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I--~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV--YIDNIKTNDLDDDELTK 79 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE--EETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE--EECCEEcccCCHHHHHH
Confidence 577889988863 46999999999999999999999999999999999999 688999 8999987541
Q ss_pred -ccccceeeccChHHHHH-HHHHHhcccce-------eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 145 -LNRDLSFKAEDRVENIR-RIEKIEMPAVQ-------CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 145 -~~~~ig~v~q~~~~~~~-~v~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
.++.+||++|++..... ++.+...++.. ...........+...........++...++|+|++||+.++++
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 23469999998632221 34433332110 0000000000000000000001133456788999999999998
Q ss_pred hhccC
Q 027590 216 IHMNH 220 (221)
Q Consensus 216 ~~~~~ 220 (221)
...++
T Consensus 160 l~~~p 164 (235)
T 3tif_A 160 LANNP 164 (235)
T ss_dssp HTTCC
T ss_pred HHcCC
Confidence 76653
No 5
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.85 E-value=3.2e-21 Score=160.62 Aligned_cols=143 Identities=20% Similarity=0.147 Sum_probs=94.7
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc-------c-
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG-------L- 145 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~-------~- 145 (221)
++++++|++++|+..++++++||++++|++++|+||||||||||+|+|+|++ |++|+| .++|.++... +
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV--FLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEE--EETTEECCSSCHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEECCCCCHHHHHHHH
Confidence 3688999999998888999999999999999999999999999999999999 578999 8999987531 1
Q ss_pred cccceeeccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 146 NRDLSFKAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++.++|++|++..... ++.+...++. ............+...... .+..++...++|+|++||+.++++...++
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGL-GDKLSRKPYELSGGEQQRVAIARALANEP 159 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-TTCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-chhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 2579999998522111 2222222210 0000000000000000000 01122334578889999999999876653
No 6
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.85 E-value=6.9e-22 Score=168.81 Aligned_cols=141 Identities=19% Similarity=0.204 Sum_probs=97.6
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDL 149 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~i 149 (221)
.++++.|+++.|+..++|+++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++.. .+++.+
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I--~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC--HLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEE--EETTEETTTSCHHHHHHHE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE--EECCEECCcCCHHHHhheE
Confidence 4688999999999999999999999999999999999999999999999999 688999 899999864 345679
Q ss_pred eeeccChHHHHH-HHHHHhcccceeee--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 150 SFKAEDRVENIR-RIEKIEMPAVQCCQ--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 150 g~v~q~~~~~~~-~v~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
+|++|++..... ++.+...++..... ............... .+..++...++|+|++||+.++++...
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDC-LALAQRDYRVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTC-STTTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCC-hhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999998643221 44554444321100 000000000000000 001122345688899999999998764
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.85 E-value=9.3e-23 Score=173.77 Aligned_cols=142 Identities=18% Similarity=0.125 Sum_probs=97.1
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----------
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----------- 143 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----------- 143 (221)
+++++|++++|+..++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|.++..
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI--IVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEEcccccccccccccc
Confidence 688999999998888999999999999999999999999999999999999 578999 899988751
Q ss_pred ------cccccceeeccChHHHHH-HHHHHhcccc-----eeeehhhhhcccccccchhhHHH-HHHHHHHHhhhcchhH
Q 027590 144 ------GLNRDLSFKAEDRVENIR-RIEKIEMPAV-----QCCQKEISLRCSWMCHFKCVRQG-TQRAFTSLHEKGRSRV 210 (221)
Q Consensus 144 ------~~~~~ig~v~q~~~~~~~-~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 210 (221)
.+++.+||++|++..... ++.+...++. ............+...... .+. .++...++|+|++||+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~~LSgGq~qRv 162 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGI-DERAQGKYPVHLSGGQQQRV 162 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-CHHHHTSCGGGSCHHHHHHH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCC-CchhhcCCcccCCHHHHHHH
Confidence 234679999998521111 2222222210 0000000000111111111 122 3455678999999999
Q ss_pred HHhhhhhccC
Q 027590 211 LLGLMIHMNH 220 (221)
Q Consensus 211 ~~~~~~~~~~ 220 (221)
.++++...++
T Consensus 163 ~lAraL~~~p 172 (262)
T 1b0u_A 163 SIARALAMEP 172 (262)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHhcCC
Confidence 9999876653
No 8
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=1.1e-22 Score=171.26 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=97.0
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc-----cccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG-----LNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~-----~~~~ 148 (221)
++++++|++++|+..++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|.++... .++.
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI--IFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE--EETTEECTTCCHHHHHHTT
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--EECCEECCCCCHHHHHhCC
Confidence 3688999999998888999999999999999999999999999999999999 678999 8999987531 2346
Q ss_pred ceeeccChHHHHH-HHHHHhcccceeee---hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 149 LSFKAEDRVENIR-RIEKIEMPAVQCCQ---KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+||++|++..... ++.+...++..... ........+........+..++...++|+|++||+.++++...++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 158 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999998632222 45554444321000 000000000000000011112233467889999999999876653
No 9
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.85 E-value=1e-21 Score=168.82 Aligned_cols=137 Identities=17% Similarity=0.140 Sum_probs=97.8
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccc--c----cccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR--H----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~--~----~~~~ 147 (221)
.+++++|++++|+..++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|.++. . .+++
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I--~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV--NLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EETTBCCC---CCHHHHHT
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEE--EECCEEcccccCCHHHHcC
Confidence 3688999999998888999999999999999999999999999999999999 678999 89998875 2 3457
Q ss_pred cceeeccChHHHH-H--HHHHHhcccceeeehhhhhcccccccchhhHHHH-------------HHHHHHHhhhcchhHH
Q 027590 148 DLSFKAEDRVENI-R--RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGT-------------QRAFTSLHEKGRSRVL 211 (221)
Q Consensus 148 ~ig~v~q~~~~~~-~--~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~ 211 (221)
.|||++|++.... . ++.+...++......... .......+.+ ++...++|+|++||+.
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~ 171 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQ------DIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM 171 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhcccccc------CCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence 7999999864322 1 566655543211000000 0001111222 2334567889999999
Q ss_pred Hhhhhhcc
Q 027590 212 LGLMIHMN 219 (221)
Q Consensus 212 ~~~~~~~~ 219 (221)
++++...+
T Consensus 172 lAraL~~~ 179 (279)
T 2ihy_A 172 IARALMGQ 179 (279)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhCC
Confidence 99987654
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.85 E-value=4.8e-22 Score=169.56 Aligned_cols=143 Identities=17% Similarity=0.112 Sum_probs=95.9
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccc--c----ccc
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR--H----GLN 146 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~--~----~~~ 146 (221)
..+++++|+++.|+..++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|.++. . .++
T Consensus 22 ~~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I--~~~g~~i~~~~~~~~~~~ 99 (263)
T 2olj_A 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI--IIDGINLKAKDTNLNKVR 99 (263)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EETTEESSSTTCCHHHHH
T ss_pred hheEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE--EECCEECCCccccHHHHh
Confidence 34789999999998888999999999999999999999999999999999999 578999 89998874 1 235
Q ss_pred ccceeeccChHHHHH-HHHHHhcccc-----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 147 RDLSFKAEDRVENIR-RIEKIEMPAV-----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 147 ~~ig~v~q~~~~~~~-~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+.|||++|++..... ++.+...++. ............+...... .+..++...++|+|++||+.++++...+
T Consensus 100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~lAraL~~~ 177 (263)
T 2olj_A 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL-KDKAHAYPDSLSGGQAQRVAIARALAME 177 (263)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-chHhcCChhhCCHHHHHHHHHHHHHHCC
Confidence 679999998532111 2333222210 0000000000000000000 0112333557888999999999987655
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.84 E-value=2e-22 Score=171.10 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=98.5
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-----ccccc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-----~~~~~ 148 (221)
++++++|++++|+..++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++.. ..++.
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV--YFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE--EETTEECTTCCHHHHHHHT
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCEECCCCCHHHHHhCC
Confidence 3688999999999888999999999999999999999999999999999999 578999 899998753 13457
Q ss_pred ceeeccChHHHHH-HHHHHhccccee-eehhhhhc--ccccccchhhHHHH-------------HHHHHHHhhhcchhHH
Q 027590 149 LSFKAEDRVENIR-RIEKIEMPAVQC-CQKEISLR--CSWMCHFKCVRQGT-------------QRAFTSLHEKGRSRVL 211 (221)
Q Consensus 149 ig~v~q~~~~~~~-~v~~~~~~g~~~-~~~~~~~~--~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~ 211 (221)
+||++|++..... ++.+...++... ........ ..+........+.+ ++...++|+|++||+.
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~ 163 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 163 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH
Confidence 9999998743222 555555443211 00000000 00000001111222 2334467789999999
Q ss_pred HhhhhhccC
Q 027590 212 LGLMIHMNH 220 (221)
Q Consensus 212 ~~~~~~~~~ 220 (221)
++++...++
T Consensus 164 iAraL~~~p 172 (257)
T 1g6h_A 164 IGRALMTNP 172 (257)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHcCC
Confidence 999876553
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=7.3e-21 Score=161.64 Aligned_cols=143 Identities=10% Similarity=0.040 Sum_probs=95.5
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc---cccccc
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---GLNRDL 149 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---~~~~~i 149 (221)
.++++++|++++|+..++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|.++.. ..++.|
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I--~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV--TVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EETTEETTTCHHHHHTTE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EECCEECCccHHHHhhcE
Confidence 35788999999998889999999999999999999999999999999999999 678999 899988753 345679
Q ss_pred eeeccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 150 SFKAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 150 g~v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
||++|++..... ++.+...++. ............+...... .+..++...++|+|++||+.++++...+
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL-~~~~~~~~~~LSgGq~qRv~lAraL~~~ 164 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL-GEKIKDRVSTYSKGMVRKLLIARALMVN 164 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-GGGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-chHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999998522111 2222222110 0000000000000000000 0112233557888999999999987654
No 13
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.84 E-value=9.4e-21 Score=167.89 Aligned_cols=144 Identities=12% Similarity=0.055 Sum_probs=97.6
Q ss_pred ccceeeeeeeEec-CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccc
Q 027590 74 STVAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDL 149 (221)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~i 149 (221)
+.+++++|++++| +..++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++.. ..++.|
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV--WIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE--EETTEECTTCCGGGSSE
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEE--EECCEECCcCChhhCcE
Confidence 3468889999999 8888999999999999999999999999999999999999 688999 899998854 345789
Q ss_pred eeeccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 150 SFKAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 150 g~v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|||+|+....-. ++.+....+. .+..........+...... .+..++...+||+|++||+.++++...+.
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~r~~~~LSGGq~QRvalArAL~~~P 164 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRL-ESYANRFPHELSGGQQQRVALARALAPRP 164 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-hhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998532111 2333222211 0000000000000000000 11123345678889999999999877653
No 14
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.84 E-value=1.5e-21 Score=173.38 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=96.8
Q ss_pred cccceeeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----
Q 027590 73 NSTVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH---- 143 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~---- 143 (221)
.+++++++|+++.|+. ..+|+++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++..
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I--~i~G~~i~~~~~~ 98 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV--LVDGQELTTLSES 98 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE--EETTEECSSCCHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEE--EECCEECCcCCHH
Confidence 3457899999999953 56999999999999999999999999999999999999 688999 899999864
Q ss_pred ---cccccceeeccChHHHHH-HHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 144 ---GLNRDLSFKAEDRVENIR-RIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 144 ---~~~~~ig~v~q~~~~~~~-~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
..++.|||+||++..... ++.+.+.++.. ................. ..+.+++...+||+|++||+.++++
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vg-L~~~~~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG-LGDKHDSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT-CGGGTTCCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CchHhcCChhhCCHHHHHHHHHHHH
Confidence 235789999998632221 34443333210 00000000000000000 0011233345678899999999998
Q ss_pred hhccC
Q 027590 216 IHMNH 220 (221)
Q Consensus 216 ~~~~~ 220 (221)
...++
T Consensus 178 L~~~P 182 (366)
T 3tui_C 178 LASNP 182 (366)
T ss_dssp TTTCC
T ss_pred HhcCC
Confidence 87653
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.84 E-value=2.1e-21 Score=163.53 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=94.7
Q ss_pred eeeeeeeEec-CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccce
Q 027590 77 AKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 77 ~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
++++|++++| +..++++++||++++|++++|+||||||||||+++|+|++ |++|+| .++|.++.. .+++.++
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI--TIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE--EETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEEhhhCCHHHHHhhEE
Confidence 5788999999 6678999999999999999999999999999999999999 688999 899988753 3567899
Q ss_pred eeccChHHHHHHHHHHhcccceeeeh---hhhhccc-----ccccc-hhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIRRIEKIEMPAVQCCQK---EISLRCS-----WMCHF-KCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~~v~~~~~~g~~~~~~---~~~~~~~-----~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++|++...-.++.+...++...... ....... +.... ........+....+|+|++||+.++++...+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~ 157 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence 99998732112455554443100000 0000000 00000 0000000112247899999999999987654
No 16
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.84 E-value=5.3e-22 Score=176.93 Aligned_cols=142 Identities=13% Similarity=0.052 Sum_probs=96.8
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceee
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFK 152 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v 152 (221)
.++++|++++|+...+++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++.. ..++.||||
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI--YFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE--EETTEECTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEE--EECCEECCCCChhhCcEEEE
Confidence 588999999999888999999999999999999999999999999999999 688999 899998864 335789999
Q ss_pred ccChHHHHH-HHHHHhcccceee--e--hhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENIR-RIEKIEMPAVQCC--Q--KEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~~-~v~~~~~~g~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
||+....-. ++.+...++.... . ........+...... .+..++...+||+|++||+.++++...++
T Consensus 89 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSGGq~QRvalArAL~~~P 160 (372)
T 1v43_A 89 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-EELLNRYPAQLSGGQRQRVAVARAIVVEP 160 (372)
T ss_dssp EC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-GGGTTSCTTTCCSSCHHHHHHHHHHTTCC
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999754332 5666655542110 0 000000000000000 01122334567889999999999877653
No 17
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.84 E-value=1.1e-21 Score=170.72 Aligned_cols=136 Identities=17% Similarity=0.131 Sum_probs=97.8
Q ss_pred cceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
..++++|++++|+ ...+|+++||++++||+++|+||||||||||+++|+|++ |++|+| .++|.++.. .+++.
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I--~i~G~~i~~~~~~~~r~~ 129 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI--RIDGQDISQVTQASLRSH 129 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEE--EETTEETTSBCHHHHHHT
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEE--EECCEEcccCCHHHHhcc
Confidence 4588999999995 567999999999999999999999999999999999999 688999 899999865 46778
Q ss_pred ceeeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHH---------------HHHhhhcchhHHHh
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAF---------------TSLHEKGRSRVLLG 213 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~~~~~~~ 213 (221)
||||+|++...-.++.+...++...... .. .+. ......+.+.+ ..||+|++||+.++
T Consensus 130 i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~-~~---~~~---~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 130 IGVVPQDTVLFNDTIADNIRYGRVTAGN-DE---VEA---AAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTSTTCCH-HH---HHH---HHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred eEEEecCCccCcccHHHHHHhhcccCCH-HH---HHH---HHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHH
Confidence 9999999743222555555554311100 00 000 00000011111 35889999999999
Q ss_pred hhhhcc
Q 027590 214 LMIHMN 219 (221)
Q Consensus 214 ~~~~~~ 219 (221)
++...+
T Consensus 203 RAL~~~ 208 (306)
T 3nh6_A 203 RTILKA 208 (306)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 987654
No 18
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.84 E-value=3.9e-22 Score=177.06 Aligned_cols=142 Identities=14% Similarity=0.058 Sum_probs=98.5
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceee
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFK 152 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v 152 (221)
+++++|++++|+..++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++.. ..++.|||+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI--YFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE--EETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEE--EECCEECCCCChhhCcEEEE
Confidence 478889999999888999999999999999999999999999999999999 688999 899998864 335789999
Q ss_pred ccChHHHHH-HHHHHhcccceee----ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENIR-RIEKIEMPAVQCC----QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~~-~v~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|+....-. ++.+....+.... .........+...... .+..++...+||+|++||+.++++...+.
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSgGq~QRvalArAL~~~P 152 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI-DNLLDRKPTQLSGGQQQRVALARALVKQP 152 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 998632212 4444444432100 0000000000000000 11123344678889999999999877653
No 19
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.83 E-value=2.6e-22 Score=166.41 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=94.5
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeecc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~q 154 (221)
.++++|+++.|+. ++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|.++. ..++.++|++|
T Consensus 10 ~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I--~~~g~~~~-~~~~~i~~v~q 85 (214)
T 1sgw_A 10 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI--IYNGVPIT-KVKGKIFFLPE 85 (214)
T ss_dssp EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EETTEEGG-GGGGGEEEECS
T ss_pred eEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE--EECCEEhh-hhcCcEEEEeC
Confidence 5788999999988 9999999999999999999999999999999999999 678999 89998876 45678999999
Q ss_pred ChHHHHH-HHHHHhcccce----eeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 155 DRVENIR-RIEKIEMPAVQ----CCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 155 ~~~~~~~-~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++..... ++.+...++.. ... ......+....... .. .+....+|.|++||+.++++...+.
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~--~~~~~~~l~~~gl~-~~-~~~~~~LSgGqkqrv~laraL~~~p 152 (214)
T 1sgw_A 86 EIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVL-DL-KKKLGELSQGTIRRVQLASTLLVNA 152 (214)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCC-CT-TSBGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCchH--HHHHHHHHHHcCCC-cC-CCChhhCCHHHHHHHHHHHHHHhCC
Confidence 8632111 22222222100 000 00000000000000 01 2335678999999999999876653
No 20
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.83 E-value=1.8e-20 Score=166.42 Aligned_cols=142 Identities=16% Similarity=0.086 Sum_probs=95.6
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceee
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFK 152 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v 152 (221)
.++++|++++|+..++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++.. ..++.||||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI--YFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE--EETTEECTTSCGGGTTEEEE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEE--EECCEECCcCCHhHCcEEEE
Confidence 478889999998888999999999999999999999999999999999999 688999 899998854 335679999
Q ss_pred ccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|+....-. ++.+....+. .+..........+...... .+..++...+||+|++||+.++++...++
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSGGq~QRvalArAL~~~P 152 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI-DKLLNRYPWQLSGGQQQRVAIARALVKEP 152 (362)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-TTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 998522111 2333222211 0000000000000000000 01122334578889999999999877653
No 21
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.83 E-value=3.4e-21 Score=162.75 Aligned_cols=139 Identities=23% Similarity=0.151 Sum_probs=95.4
Q ss_pred eeeeeeeEec--CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccc
Q 027590 77 AKSTNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDL 149 (221)
Q Consensus 77 ~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~i 149 (221)
++++|++++| +...+++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|.++.. .+++.|
T Consensus 8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I--~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV--LIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE--EETTEETTTSCHHHHHHHE
T ss_pred eeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE--EECCEEhhhCCHHHHHhcE
Confidence 5678899999 4678999999999999999999999999999999999999 678999 899998753 345679
Q ss_pred eeeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHH-----------HHHHHHhhhcchhHHHhhhhhc
Q 027590 150 SFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQ-----------RAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 150 g~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
||++|++...-.++.+...++..... .......... ....+..+ +....+|+|++||+.++++...
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~--~~~~~~~l~~-~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMS--VEKVIYAAKL-AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCC--HHHHHHHHHH-HTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEEeCCCccccccHHHHHhccCCCCC--HHHHHHHHHH-hChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999864321255565554320000 0000000000 00011111 1125799999999999998766
Q ss_pred cC
Q 027590 219 NH 220 (221)
Q Consensus 219 ~~ 220 (221)
+.
T Consensus 163 ~p 164 (247)
T 2ff7_A 163 NP 164 (247)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 22
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.83 E-value=3e-21 Score=171.02 Aligned_cols=142 Identities=13% Similarity=-0.005 Sum_probs=97.4
Q ss_pred ceeeeeeeEecCCcc--ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-------cc
Q 027590 76 VAKSTNILWHKNSVD--KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-------GL 145 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~--~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-------~~ 145 (221)
+++++|++++|+..+ +++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++.. ..
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL--YFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE--EETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCEECcccccccCChh
Confidence 478889999998888 999999999999999999999999999999999999 688999 899998743 34
Q ss_pred cccceeeccChHHHHH-HHHHHhcccceee----ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 146 NRDLSFKAEDRVENIR-RIEKIEMPAVQCC----QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~~-~v~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++.|||++|+...... ++.+....+.... .........+...... .+..++...+||+|++||+.++++...++
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~~~~~~LSGGq~QRvalAraL~~~P 159 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI-HHVLNHFPRELSGAQQQRVALARALVKDP 159 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 5789999998632222 4444444322100 0000000000000000 01122334578889999999999877653
No 23
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.83 E-value=3e-21 Score=173.03 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=72.8
Q ss_pred cceeeeeeeEec--CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc----ccccc
Q 027590 75 TVAKSTNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
..++++|++++| +...+|+++||++++||+++|+||||||||||+|+|+|+++++|+| +++|+++.. .+++.
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I--~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEI--QIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEE--EESSCBTTSSCHHHHHHT
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEE--EECCEECCcCChHHHhCC
Confidence 457899999999 6778999999999999999999999999999999999999877999 899999864 34578
Q ss_pred ceeeccChH
Q 027590 149 LSFKAEDRV 157 (221)
Q Consensus 149 ig~v~q~~~ 157 (221)
||||||++.
T Consensus 96 ig~v~Q~~~ 104 (390)
T 3gd7_A 96 FGVIPQKVF 104 (390)
T ss_dssp EEEESCCCC
T ss_pred EEEEcCCcc
Confidence 999999863
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.83 E-value=8.7e-22 Score=168.06 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=97.5
Q ss_pred ceeeeeeeEecC--C---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-ccccc
Q 027590 76 VAKSTNILWHKN--S---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-GLNRD 148 (221)
Q Consensus 76 ~~~~~~~~~~~~--~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-~~~~~ 148 (221)
+++++|++++|+ . .++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|.++.. .+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I--~~~g~~~~~~~~~~~ 79 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV--LYDGERKKGYEIRRN 79 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE--EETTEECCHHHHGGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE--EECCEECchHHhhhh
Confidence 467889999996 4 57999999999999999999999999999999999999 578999 899988753 34567
Q ss_pred ceeeccChHHHH--HHHHHHhccccee-ee--hhhhhcccccccchhhH-HHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 149 LSFKAEDRVENI--RRIEKIEMPAVQC-CQ--KEISLRCSWMCHFKCVR-QGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 149 ig~v~q~~~~~~--~~v~~~~~~g~~~-~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+||++|++...+ .++.+...++... .. ........+........ +..++....+|+|++||+.++++...+.
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p 157 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEP 157 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999862111 1444444332110 00 00000001111111110 2234455688999999999999876653
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.83 E-value=2.6e-21 Score=165.66 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=97.9
Q ss_pred ccceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cc
Q 027590 74 STVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GL 145 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~ 145 (221)
..+++++|+++.|+. .++++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|.++.. .+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I--~~~g~~i~~~~~~~~ 91 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV--LLDGEPLVQYDHHYL 91 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE--EETTEEGGGBCHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE--EECCEEcccCCHHHH
Confidence 346889999999976 68999999999999999999999999999999999999 678999 899998853 24
Q ss_pred cccceeeccChHHHHHHHHHHhcccceeeeh---hhhh-----cccccccch-hhHHHHHHHHHHHhhhcchhHHHhhhh
Q 027590 146 NRDLSFKAEDRVENIRRIEKIEMPAVQCCQK---EISL-----RCSWMCHFK-CVRQGTQRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~~~v~~~~~~g~~~~~~---~~~~-----~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (221)
++.|+|++|++...-.++.+...++...... .... ...+..... .......+....+|+|++||+.++++.
T Consensus 92 ~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL 171 (271)
T 2ixe_A 92 HTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL 171 (271)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred hccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH
Confidence 5679999998632112555554443211000 0000 000000000 000011233457899999999999987
Q ss_pred hcc
Q 027590 217 HMN 219 (221)
Q Consensus 217 ~~~ 219 (221)
..+
T Consensus 172 ~~~ 174 (271)
T 2ixe_A 172 IRK 174 (271)
T ss_dssp TTC
T ss_pred hcC
Confidence 654
No 26
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.83 E-value=2.7e-20 Score=165.98 Aligned_cols=142 Identities=15% Similarity=0.063 Sum_probs=95.3
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--------ccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------GLN 146 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------~~~ 146 (221)
+++++|++++|+..++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++.. ..+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI--YIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE--EETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEE--EECCEECccccccccCCHhH
Confidence 477889999998888999999999999999999999999999999999999 688999 899988743 235
Q ss_pred ccceeeccChHHHHH-HHHHHhcccc----eeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 147 RDLSFKAEDRVENIR-RIEKIEMPAV----QCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 147 ~~ig~v~q~~~~~~~-~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+.||||+|+....-. ++.+....+. ............+..... ..+..++...+||+|++||+.++++...++
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG-LTELLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-CGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-CchHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 679999998522111 2333222211 000000000000000000 001122334578889999999999877653
No 27
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.81 E-value=1.3e-20 Score=166.63 Aligned_cols=139 Identities=16% Similarity=0.137 Sum_probs=94.4
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeec
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKA 153 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~ 153 (221)
++++|++++|+.. +++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|+++.. ..++.|||++
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I--~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI--LLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE--EETTEECTTSCHHHHTCEEEC
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE--EECCEECCCCchhhCcEEEEe
Confidence 5788999999887 999999999999999999999999999999999999 688999 899998854 3456899999
Q ss_pred cChHHHHH-HHHHHhccccee--eehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENIR-RIEKIEMPAVQC--CQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|+....-. ++.+....+... .... .....+...... .+..++...+||+|++||+.++++...+.
T Consensus 79 Q~~~l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L-~~~~~~~~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 79 QNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKI-EHLLDRNPLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTC-TTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 98521111 222222221100 0000 000001000000 11123345688999999999999877653
No 28
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.81 E-value=1.2e-20 Score=160.56 Aligned_cols=140 Identities=13% Similarity=0.080 Sum_probs=94.5
Q ss_pred cceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
..++++|++++|+. .++++++||++++|++++|+||||||||||+++|+|+++++|+| .++|.++.. .+++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I--~i~g~~i~~~~~~~~~~ 93 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI--KIGGKNVNKYNRNSIRS 93 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEE--EETTEEGGGBCHHHHHT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEE--EECCEEhhhcCHHHHhc
Confidence 35788999999975 46999999999999999999999999999999999999658999 899998853 3457
Q ss_pred cceeeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHH-----------HHHHHHHhhhcchhHHHhhhh
Q 027590 148 DLSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGT-----------QRAFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~ 216 (221)
.|+|++|++...-.++.+...++..... ............ ..+.. .+....+|+|++||+.++++.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~--~~~~~~~l~~~~-l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL 170 (260)
T 2ghi_A 94 IIGIVPQDTILFNETIKYNILYGKLDAT--DEEVIKATKSAQ-LYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL 170 (260)
T ss_dssp TEEEECSSCCCCSEEHHHHHHTTCTTCC--HHHHHHHHHHTT-CHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred cEEEEcCCCcccccCHHHHHhccCCCCC--HHHHHHHHHHhC-CHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 8999999863211244444433211000 000000000000 00000 011246899999999999987
Q ss_pred hcc
Q 027590 217 HMN 219 (221)
Q Consensus 217 ~~~ 219 (221)
..+
T Consensus 171 ~~~ 173 (260)
T 2ghi_A 171 LKD 173 (260)
T ss_dssp HHC
T ss_pred HcC
Confidence 654
No 29
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.81 E-value=7.5e-21 Score=160.84 Aligned_cols=80 Identities=25% Similarity=0.264 Sum_probs=69.9
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc--c-ccCceEEEEECCcccccc-----ccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--L-HWRGKLTYILDGDNCRHG-----LNR 147 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~--l-~~~G~i~~~l~g~~~~~~-----~~~ 147 (221)
+++++|++++|+..++++++||++++||+++|+||||||||||+|+|+|+ + |++|+| .++|.++... .+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I--~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEI--LLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEE--EETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE--EECCEECCCCCHHHHHhC
Confidence 47889999999888899999999999999999999999999999999998 5 688999 8999987531 234
Q ss_pred cceeeccChH
Q 027590 148 DLSFKAEDRV 157 (221)
Q Consensus 148 ~ig~v~q~~~ 157 (221)
.++|++|++.
T Consensus 81 ~i~~v~q~~~ 90 (250)
T 2d2e_A 81 GLFLAFQYPV 90 (250)
T ss_dssp TBCCCCCCCC
T ss_pred cEEEeccCCc
Confidence 5899999863
No 30
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.80 E-value=8.1e-21 Score=159.91 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=92.8
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeec
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKA 153 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~ 153 (221)
++++|++++|+. +++++||++++ |+++|+||||||||||+|+|+|++ |++|+| .++|.++.. ..++.+||++
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEV--RLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEE--EETTEECTTSCTTTSCCBCCC
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EECCEECCcCchhhCcEEEEc
Confidence 567899999976 49999999999 999999999999999999999999 678999 899988753 3456799999
Q ss_pred cChHHHHH-HHHHHhcccceee--ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENIR-RIEKIEMPAVQCC--QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++..... ++.+...++.... .........+...... .+..++...++|+|++||+.++++...++
T Consensus 77 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGqkqRv~lAral~~~p 145 (240)
T 2onk_A 77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI-AHLLDRKPARLSGGERQRVALARALVIQP 145 (240)
T ss_dssp SSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTC-TTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCC-HHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 98632211 3444443321000 0000000001101100 01123335678899999999999876653
No 31
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.80 E-value=2.6e-20 Score=155.54 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=89.5
Q ss_pred cceeeeeeeEecC--CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccccccccee
Q 027590 75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (221)
Q Consensus 75 ~~~~~~~~~~~~~--~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~ 151 (221)
..++++|++++|+ ..++++++||++++|++++|+||||||||||+++|+|++ |++|+| .++| .++|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g---------~i~~ 73 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI--KHSG---------RISF 73 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE--EECS---------CEEE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEE--EECC---------EEEE
Confidence 4688999999994 578999999999999999999999999999999999999 678999 7887 4899
Q ss_pred eccChHHHHHHHHHHhcccceeee-hhhhhcccc-----cccc-hhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 152 KAEDRVENIRRIEKIEMPAVQCCQ-KEISLRCSW-----MCHF-KCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 152 v~q~~~~~~~~v~~~~~~g~~~~~-~~~~~~~~~-----~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++...-.++.+...++..... ......... .... ......+.+....+|+|++||+.++++...+.
T Consensus 74 v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 74 CSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp ECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999863211244444444321000 000000000 0000 00000001113589999999999999876653
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.79 E-value=2.4e-20 Score=159.28 Aligned_cols=80 Identities=19% Similarity=0.112 Sum_probs=69.7
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCceEEEEECCcccccc----c-c
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL---HWRGKLTYILDGDNCRHG----L-N 146 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l---~~~G~i~~~l~g~~~~~~----~-~ 146 (221)
++++++|++++|+..++++++||++++||+++|+||||||||||+|+|+|++ |++|+| .++|.++... . +
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I--~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV--EFKGKDLLALSPEDRAG 96 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEE--EETTEEGGGSCHHHHHH
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE--EECCEECCcCCHHHHhh
Confidence 4688999999998888999999999999999999999999999999999983 578999 8999987531 1 3
Q ss_pred ccceeeccCh
Q 027590 147 RDLSFKAEDR 156 (221)
Q Consensus 147 ~~ig~v~q~~ 156 (221)
..++|++|++
T Consensus 97 ~~i~~v~Q~~ 106 (267)
T 2zu0_C 97 EGIFMAFQYP 106 (267)
T ss_dssp HTEEEECSSC
T ss_pred CCEEEEccCc
Confidence 4589999986
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.79 E-value=6.4e-21 Score=162.60 Aligned_cols=140 Identities=19% Similarity=0.100 Sum_probs=93.4
Q ss_pred eeeeeeeEecCC----ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc-cccccce-
Q 027590 77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GLNRDLS- 150 (221)
Q Consensus 77 ~~~~~~~~~~~~----~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~-~~~~~ig- 150 (221)
++++|++++|+. .++++++||+++ |++++|+||||||||||+|+|+|++|++|++ .++|.++.. ..++.++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I--~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNI--FINGMEVRKIRNYIRYST 78 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEE--EETTEEGGGCSCCTTEEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEE--EECCEECcchHHhhheEE
Confidence 577889999976 789999999999 9999999999999999999999999667999 899988753 1256799
Q ss_pred eeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 151 FKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 151 ~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++|++.. ..++.+...++.............+........+..++...++|+|++||+.++++...++
T Consensus 79 ~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 79 NLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp CCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred EeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 99998643 1133333222100000000000000000010001223446689999999999999876653
No 34
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.79 E-value=9.3e-21 Score=160.67 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=89.1
Q ss_pred ceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeec
Q 027590 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA 153 (221)
Q Consensus 76 ~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~ 153 (221)
+++++|++++|+ ..++++++||++++|++++|+||||||||||+++|+|++ |++|+| . +++.+||++
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I--~---------~~~~i~~v~ 72 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI--E---------VYQSIGFVP 72 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEE--E---------ECSCEEEEC
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--E---------EeccEEEEc
Confidence 578899999998 788999999999999999999999999999999999999 578998 4 245799999
Q ss_pred cChHHHHH-HHHHHhcccceeeeh--------hhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENIR-RIEKIEMPAVQCCQK--------EISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++..... ++.+...++...... .......+...... .+..++....+|+|++||+.++++...++
T Consensus 73 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~lAraL~~~p 147 (253)
T 2nq2_C 73 QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNL-THLAKREFTSLSGGQRQLILIARAIASEC 147 (253)
T ss_dssp SCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHHHHHHHHHHTTC
T ss_pred CCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCC-hHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 98632211 444444332211000 00000000000000 01122234567889999999999876553
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.79 E-value=5.7e-21 Score=161.70 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=92.1
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccccce
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRDLS 150 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ig 150 (221)
+++++|++++ ++++++||++++||+++|+||||||||||+|+|+|++ |+ |++ .++|.++.. .+++.++
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i--~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSI--QFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEE--EETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEE--EECCEECCcCCHHHHhceEE
Confidence 5778888865 7999999999999999999999999999999999999 68 999 899998753 3456799
Q ss_pred eeccChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 151 FKAEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 151 ~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
|++|++..... ++.+...++...... ......+...... .+..++...++|+|++||+.++++...+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTR-TELLNDVAGALAL-DDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTC-HHHHHHHHHHTTC-GGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCc-HHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99998643222 455554443211000 0000001000000 1112334567899999999999987654
No 36
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.79 E-value=2.3e-19 Score=168.09 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=101.8
Q ss_pred cceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
..++.+|++++|+. .++++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|.++.+ .+++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i--~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI--CLDGHDVRDYKLTNLRR 417 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE--EECCEEhhhCCHHHHhc
Confidence 46889999999974 67999999999999999999999999999999999999 688999 899998854 4567
Q ss_pred cceeeccChHHHHHHHHHHhcccceeeehhhhhcccccccch----------hhHHHHHHHHHHHhhhcchhHHHhhhhh
Q 027590 148 DLSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFK----------CVRQGTQRAFTSLHEKGRSRVLLGLMIH 217 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (221)
.+||++|++.-.-.++.+....+..+.... +.......... .......+....+|+|+|||+.++++..
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 418 HFALVSQNVHLFNDTIANNIAYAAEGEYTR-EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred CeEEEcCCCccccccHHHHHhccCCCCCCH-HHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 899999998544347777766653110000 00000000000 0001111223578999999999999876
Q ss_pred ccC
Q 027590 218 MNH 220 (221)
Q Consensus 218 ~~~ 220 (221)
.+.
T Consensus 497 ~~p 499 (582)
T 3b5x_A 497 RDA 499 (582)
T ss_pred cCC
Confidence 653
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.79 E-value=6.6e-20 Score=153.91 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=88.4
Q ss_pred ceeeeeeeEecC--CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceee
Q 027590 76 VAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFK 152 (221)
Q Consensus 76 ~~~~~~~~~~~~--~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v 152 (221)
+++++|++++|+ ..++++++||++++|++++|+||||||||||+|+|+|++ |++|+| .++| .++|+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I--~~~g---------~i~~v 71 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV--AIKG---------SVAYV 71 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEE--EECS---------CEEEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECC---------EEEEE
Confidence 478889999997 578999999999999999999999999999999999999 688999 7887 38999
Q ss_pred ccChHHHHHHHHHHhcccceeeehhhhhcccccccch-------hhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 153 AEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFK-------CVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 153 ~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
+|++.....++.+...++................... .......+....+|+|++||+.++++...+
T Consensus 72 ~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 145 (237)
T 2cbz_A 72 PQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 145 (237)
T ss_dssp CSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred cCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9986321114444443322100000000000000000 000001122457899999999999987654
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.77 E-value=2.5e-19 Score=167.86 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=98.0
Q ss_pred cceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
..++.+|++++|+. .++++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|.++.+ .+++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i--~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI--LMDGHDLREYTLASLRN 417 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE--EETTEETTTBCHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeE--EECCEEccccCHHHHHh
Confidence 46889999999973 68999999999999999999999999999999999999 688999 899998864 3567
Q ss_pred cceeeccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHH-----------HHHHHhhhcchhHHHhhhh
Q 027590 148 DLSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQR-----------AFTSLHEKGRSRVLLGLMI 216 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~~~ 216 (221)
.++|++|++.-.-.++.+....+..+.... +........ ....+..++ ....+|+|+|||+.++++.
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~l~~-~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 418 QVALVSQNVHLFNDTVANNIAYARTEEYSR-EQIEEAARM-AYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCH-HHHHHHHHT-TTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred hCeEEccCCcCCCCCHHHHHhccCCCCCCH-HHHHHHHHH-cCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 899999997422225555554432110000 000000000 000111111 1246899999999999987
Q ss_pred hccC
Q 027590 217 HMNH 220 (221)
Q Consensus 217 ~~~~ 220 (221)
..++
T Consensus 496 ~~~p 499 (582)
T 3b60_A 496 LRDS 499 (582)
T ss_dssp HHCC
T ss_pred HhCC
Confidence 6553
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.76 E-value=2.2e-19 Score=168.24 Aligned_cols=143 Identities=15% Similarity=0.156 Sum_probs=98.4
Q ss_pred cceeeeeeeEecC--CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cccc
Q 027590 75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNR 147 (221)
Q Consensus 75 ~~~~~~~~~~~~~--~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~ 147 (221)
.-++.+|++++|+ ..++++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|.++.+ .+++
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i--~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI--LIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE--EETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE--EECCEEhhhCCHHHHhh
Confidence 4588999999996 357999999999999999999999999999999999999 678999 899999865 4667
Q ss_pred cceeeccChHHHHHHHHHHhcccceeeehhhhhccccc---------ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 148 DLSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWM---------CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 148 ~ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
.+||++|++.-.-.++.+....|.-.... .+...... .........+.+.-..+|+|+|||+.++++...
T Consensus 416 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 416 QIGLVQQDNILFSDTVKENILLGRPTATD-EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCH-HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heEEEeCCCccCcccHHHHHhcCCCCCCH-HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 89999999743223556655554211000 00000000 000000000111124689999999999998765
Q ss_pred cC
Q 027590 219 NH 220 (221)
Q Consensus 219 ~~ 220 (221)
+.
T Consensus 495 ~p 496 (578)
T 4a82_A 495 NP 496 (578)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=3.1e-19 Score=167.47 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=98.5
Q ss_pred ccceeeeeeeEecC--CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccc
Q 027590 74 STVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLN 146 (221)
Q Consensus 74 ~~~~~~~~~~~~~~--~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~ 146 (221)
...++.+|++++|+ ..++++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|.++.+ .++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i--~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV--EVDELDVRTVKLKDLR 416 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEE--EESSSBGGGBCHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEE--EECCEEcccCCHHHHH
Confidence 34688999999994 467999999999999999999999999999999999999 678999 899999875 457
Q ss_pred ccceeeccChHHHHHHHHHHhcccceeeeh--hhhhcc-----ccc-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 147 RDLSFKAEDRVENIRRIEKIEMPAVQCCQK--EISLRC-----SWM-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 147 ~~ig~v~q~~~~~~~~v~~~~~~g~~~~~~--~~~~~~-----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
+.++|++|++...-.++.+....+.-.... ..+... .+. .........+.+....+|+|+|||+.++++...
T Consensus 417 ~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp HHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred hheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 789999999743222555555443211000 000000 000 000000000011124688999999999998766
Q ss_pred cC
Q 027590 219 NH 220 (221)
Q Consensus 219 ~~ 220 (221)
+.
T Consensus 497 ~p 498 (587)
T 3qf4_A 497 KP 498 (587)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.75 E-value=1.8e-19 Score=169.47 Aligned_cols=144 Identities=13% Similarity=0.072 Sum_probs=100.2
Q ss_pred cceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
.-++.+|++++|+ +.++++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|.++.+ .+++.
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i--~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI--LVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE--EETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE--EECCEEhhhCCHHHHHhc
Confidence 3588999999996 467999999999999999999999999999999999999 688999 899999865 46678
Q ss_pred ceeeccChHHHHHHHHHHhcccceeee--hhhhhcccc------cccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 149 LSFKAEDRVENIRRIEKIEMPAVQCCQ--KEISLRCSW------MCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
++|++|++.-.-.++.+....+..... ...+..... ............+.-..+|+|+|||+.++++...+.
T Consensus 431 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p 510 (598)
T 3qf4_B 431 IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP 510 (598)
T ss_dssp EEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred eEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999973222245555544321100 000000000 000001111122334679999999999999876653
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.75 E-value=5.6e-19 Score=165.89 Aligned_cols=92 Identities=23% Similarity=0.213 Sum_probs=76.7
Q ss_pred eeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccccc
Q 027590 77 AKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLNRD 148 (221)
Q Consensus 77 ~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~~~ 148 (221)
++.+|++++|+. .++++++||++++||+++|+||||||||||+++|+|++ |++|+| .++|.++.+ .+++.
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i--~~~g~~i~~~~~~~~~~~ 419 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI--SLDGHDIRQLNPVWLRSK 419 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEE--EETTEETTTBCHHHHHHS
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE--EECCEEhhhCCHHHHHhc
Confidence 788999999964 36999999999999999999999999999999999999 688999 899998864 35678
Q ss_pred ceeeccChHHHHHHHHHHhccc
Q 027590 149 LSFKAEDRVENIRRIEKIEMPA 170 (221)
Q Consensus 149 ig~v~q~~~~~~~~v~~~~~~g 170 (221)
++|++|++...-.++.+...++
T Consensus 420 i~~v~Q~~~l~~~tv~eni~~~ 441 (595)
T 2yl4_A 420 IGTVSQEPILFSCSIAENIAYG 441 (595)
T ss_dssp EEEECSSCCCCSSBHHHHHHTT
T ss_pred eEEEccCCcccCCCHHHHHhhc
Confidence 9999999743222555555443
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.72 E-value=2.9e-18 Score=173.55 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=79.6
Q ss_pred ccceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cc
Q 027590 74 STVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GL 145 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~ 145 (221)
.+-++.+|++++|.+ .++|+++||+|++||.++|+|+||||||||+++|.|++ |++|+| .+||.|+.+ .+
T Consensus 1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I--~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI--FIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEE--EETTEETTTBCHHHH
T ss_pred CCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEE--EECCEEhhhCCHHHH
Confidence 345789999999953 46999999999999999999999999999999999999 788999 999999975 68
Q ss_pred cccceeeccChHHHHHHHHHHhccc
Q 027590 146 NRDLSFKAEDRVENIRRIEKIEMPA 170 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~~~v~~~~~~g 170 (221)
++.|+||+|++.-.-.++.+...+|
T Consensus 1152 R~~i~~V~Qdp~LF~gTIreNI~~g 1176 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDCSIAENIIYG 1176 (1321)
T ss_dssp HTTEEEECSSCCCCSEEHHHHHSSS
T ss_pred HhheEEECCCCEeeCccHHHHHhcc
Confidence 8999999999743333455544444
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.71 E-value=5.1e-18 Score=171.73 Aligned_cols=145 Identities=17% Similarity=0.120 Sum_probs=99.2
Q ss_pred cccceeeeeeeEecC---CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----c
Q 027590 73 NSTVAKSTNILWHKN---SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----G 144 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~---~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~ 144 (221)
...-++.+|++|+|. +.++|+++||++++|++++|+||||||||||+++|.|++ |.+|+| .+||.++++ .
T Consensus 412 ~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I--~idG~~i~~~~~~~ 489 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI--TIDGVDVRDINLEF 489 (1321)
T ss_dssp CCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEE--EETTEETTTSCHHH
T ss_pred CCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcc--cCCCccchhccHHH
Confidence 344688999999995 457999999999999999999999999999999999999 688999 899999875 5
Q ss_pred ccccceeeccChHHHHHHHHHHhcccceeeehhhhhccccc---------ccchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 145 LNRDLSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWM---------CHFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
+++.|+||+|++.-.-.++.+...+|.-... ..+...... .........+.+.-..+|+|+|||+.++++
T Consensus 490 lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~-~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARA 568 (1321)
T 4f4c_A 490 LRKNVAVVSQEPALFNCTIEENISLGKEGIT-REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARA 568 (1321)
T ss_dssp HHHHEEEECSSCCCCSEEHHHHHHTTCTTCC-HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHH
T ss_pred HhhcccccCCcceeeCCchhHHHhhhcccch-HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHH
Confidence 7788999999974333345554444421000 000000000 000000000001112478899999999998
Q ss_pred hhccC
Q 027590 216 IHMNH 220 (221)
Q Consensus 216 ~~~~~ 220 (221)
...+.
T Consensus 569 l~~~~ 573 (1321)
T 4f4c_A 569 LVRNP 573 (1321)
T ss_dssp HTTCC
T ss_pred HccCC
Confidence 87653
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.69 E-value=2.6e-18 Score=148.41 Aligned_cols=133 Identities=15% Similarity=0.124 Sum_probs=75.9
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceee
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFK 152 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v 152 (221)
.+.++++|+++. ..++++++||++++|++++|+||||||||||+|+|+|++ |++|+| .++| .++|+
T Consensus 38 ~~~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I--~~~g---------~i~~v 104 (290)
T 2bbs_A 38 DDSLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI--KHSG---------RISFC 104 (290)
T ss_dssp --------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEE--ECCS---------CEEEE
T ss_pred CceEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE--EECC---------EEEEE
Confidence 345777888764 357999999999999999999999999999999999999 688999 7877 48999
Q ss_pred ccChHHHHHHHHHHhcccceeee-hhhhhcccc-----c-ccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENIRRIEKIEMPAVQCCQ-KEISLRCSW-----M-CHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~~~v~~~~~~g~~~~~-~~~~~~~~~-----~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|++...-.++.+... +..... ......... . ...........+...++|+|++||+.++++...+.
T Consensus 105 ~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 105 SQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp CSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred eCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 9986321113333332 210000 000000000 0 00000000011224579999999999999876653
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.68 E-value=2.2e-17 Score=166.72 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=78.1
Q ss_pred cceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----ccc
Q 027590 75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GLN 146 (221)
Q Consensus 75 ~~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~~ 146 (221)
..++.+|++++|+. .++++++||++++||+++|+||||||||||+++|+|++ |++|+| .+||.++.. .++
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I--~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV--FLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE--ESSSSCTTSSCHHHHT
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE--EECCEEcccCCHHHHH
Confidence 35788999999964 36999999999999999999999999999999999999 688999 899999875 467
Q ss_pred ccceeeccChHHHHHHHHHHhccc
Q 027590 147 RDLSFKAEDRVENIRRIEKIEMPA 170 (221)
Q Consensus 147 ~~ig~v~q~~~~~~~~v~~~~~~g 170 (221)
+.++||+|++...-.++.+...++
T Consensus 1107 ~~i~~v~Q~~~l~~~ti~eNi~~~ 1130 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFDCSIAENIAYG 1130 (1284)
T ss_dssp TSCEEEESSCCCCSSBHHHHHTCC
T ss_pred hceEEECCCCccccccHHHHHhcc
Confidence 889999999832222555555443
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.68 E-value=1.4e-17 Score=168.19 Aligned_cols=141 Identities=16% Similarity=0.074 Sum_probs=97.0
Q ss_pred ccceeeeeeeEecCC---ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----cc
Q 027590 74 STVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----GL 145 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~---~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----~~ 145 (221)
..-++.+|++++|+. .++|+++||++++||+++|+||||||||||+++|+|++ |++|+| .+||.++.. .+
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i--~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV--SIDGQDIRTINVRYL 462 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEE--EETTEEGGGSCHHHH
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EECCEEHHhCCHHHH
Confidence 345889999999964 46999999999999999999999999999999999999 688999 899999875 46
Q ss_pred cccceeeccChHHHHHHHHHHhcccceeeehhhhhccccccc-chhhHHHHH-----------HHHHHHhhhcchhHHHh
Q 027590 146 NRDLSFKAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCH-FKCVRQGTQ-----------RAFTSLHEKGRSRVLLG 213 (221)
Q Consensus 146 ~~~ig~v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~~l~~~~~~~~~~~ 213 (221)
++.||||+|++.-.-.++.+...+|.-.... .. .+... .....+.+. +.-..+|+|+|||+.++
T Consensus 463 r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~-~~---~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiA 538 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFATTIAENIRYGREDVTM-DE---IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIA 538 (1284)
T ss_dssp HHHEEEECSSCCCCSSCHHHHHHHHCSSCCH-HH---HHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHH
T ss_pred HhheEEEcCCCccCCccHHHHHhcCCCCCCH-HH---HHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHH
Confidence 6789999999732222444444433211000 00 00000 000011111 11125889999999999
Q ss_pred hhhhccC
Q 027590 214 LMIHMNH 220 (221)
Q Consensus 214 ~~~~~~~ 220 (221)
++...+.
T Consensus 539 Ral~~~p 545 (1284)
T 3g5u_A 539 RALVRNP 545 (1284)
T ss_dssp HHHHHCC
T ss_pred HHHhcCC
Confidence 9876553
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.58 E-value=1.2e-16 Score=148.49 Aligned_cols=133 Identities=15% Similarity=0.115 Sum_probs=87.0
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeec
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA 153 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~ 153 (221)
.++++.++++.|++. .++.+||++++||+++|+||||||||||+|+|+|++ |++|+| .+ ...|+|++
T Consensus 286 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i--~~---------~~~i~~v~ 353 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI--EW---------DLTVAYKP 353 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCC--CC---------CCCEEEEC
T ss_pred eEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE--EE---------CceEEEEe
Confidence 367888888888764 688999999999999999999999999999999999 578998 44 23589999
Q ss_pred cChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++..... ++.+++................+...... .+.+++....||+|++||+.++++...+.
T Consensus 354 Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSGGe~qrv~lAraL~~~p 420 (538)
T 1yqt_A 354 QYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI-IDLYDREVNELSGGELQRVAIAATLLRDA 420 (538)
T ss_dssp SSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC-GGGTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred cCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC-hhhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 98632111 22222111000000000000111111111 12345567889999999999999877653
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.57 E-value=1.2e-16 Score=150.37 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=85.9
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeec
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA 153 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~ 153 (221)
.++++.++++.|++. .++.+||++++||+++|+||||||||||+|+|+|++ |++|++ .+ ...+||++
T Consensus 356 ~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I--~~---------~~~i~~v~ 423 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV--EW---------DLTVAYKP 423 (607)
T ss_dssp EEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC--CC---------CCCEEEEC
T ss_pred eEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE--EE---------eeEEEEEe
Confidence 367888899888764 688999999999999999999999999999999999 678998 44 24689999
Q ss_pred cChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|++..... ++.+++................+...... .+.+++...+||+|++||+.++++...+.
T Consensus 424 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 424 QYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI-IDLYDRNVEDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp SSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC-TTTTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred cCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 98532111 22222211000000000000001101111 11234446789999999999999887653
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.55 E-value=3.5e-15 Score=146.28 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=64.7
Q ss_pred cceeeeeeeEecCC--ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccccccccee
Q 027590 75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSF 151 (221)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~ 151 (221)
.++++.|++++|+. .++++++||++++|++++|+||||||||||+|+|+|++ |++|+| .+++. ..++|
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I--~~~~~-------~~I~y 740 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV--YTHEN-------CRIAY 740 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEE--EECTT-------CCEEE
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE--EEcCc-------cceEe
Confidence 46889999999964 67999999999999999999999999999999999999 678999 77653 24899
Q ss_pred eccChH
Q 027590 152 KAEDRV 157 (221)
Q Consensus 152 v~q~~~ 157 (221)
++|+..
T Consensus 741 v~Q~~~ 746 (986)
T 2iw3_A 741 IKQHAF 746 (986)
T ss_dssp ECHHHH
T ss_pred eccchh
Confidence 999764
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.54 E-value=6e-16 Score=143.88 Aligned_cols=134 Identities=16% Similarity=0.108 Sum_probs=85.0
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceeec
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKA 153 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v~ 153 (221)
.+++..++++.|++. .++.+||++++||+++|+||||||||||+|+|+|++ |++|+| .+++. .++|++
T Consensus 268 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i--~~~~~--------~i~~~~ 336 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV--TPEKQ--------ILSYKP 336 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE--ESSCC--------CEEEEC
T ss_pred ceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--EECCe--------eeEeec
Confidence 367788888888764 467779999999999999999999999999999999 688998 66553 467888
Q ss_pred cChHHHH-HHHHHHhcccceee-ehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 154 EDRVENI-RRIEKIEMPAVQCC-QKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 154 q~~~~~~-~~v~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
|+..... .++.+......... .........+...... .+.+++...+||+|++||++++++...+.
T Consensus 337 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSGGq~QRv~iAraL~~~p 404 (538)
T 3ozx_A 337 QRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL-HRLLESNVNDLSGGELQKLYIAATLAKEA 404 (538)
T ss_dssp SSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTG-GGCTTSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred hhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCC-HHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 7642111 01222111100000 0000000011111111 12234557889999999999999877653
No 52
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.52 E-value=3.8e-15 Score=120.79 Aligned_cols=89 Identities=75% Similarity=1.187 Sum_probs=71.5
Q ss_pred eeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccChHHH
Q 027590 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159 (221)
Q Consensus 80 ~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~ 159 (221)
.|++|.++..++.+++++..++|++++|+|+||||||||+++|++.++..|.+.++++|+++...+...++|.+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~ 82 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAEN 82 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHH
Confidence 46778888899999999999999999999999999999999999999877888778999999887778889998888776
Q ss_pred HHHHHHHhc
Q 027590 160 IRRIEKIEM 168 (221)
Q Consensus 160 ~~~v~~~~~ 168 (221)
+..+.+++.
T Consensus 83 ~~~~~~~~~ 91 (200)
T 3uie_A 83 IRRVGEVAK 91 (200)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555444
No 53
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.49 E-value=9.8e-16 Score=121.03 Aligned_cols=75 Identities=15% Similarity=0.087 Sum_probs=61.1
Q ss_pred eeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccCh
Q 027590 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (221)
Q Consensus 79 ~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~ 156 (221)
..++++.|+...+++++||++++|++++|+||||||||||+|+|+|++|.+|.+ .++|.++.+.... -.+++|+.
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V--~~~g~~i~~~~~~-~~~~~q~~ 84 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNV--KSPTYTLVEEYNI-AGKMIYHF 84 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCC--CCCTTTCEEEEEE-TTEEEEEE
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeE--EECCEeeeeeccC-CCcceecc
Confidence 345566777778999999999999999999999999999999999999888999 8899887542211 12677764
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.44 E-value=7.1e-15 Score=138.43 Aligned_cols=134 Identities=13% Similarity=0.064 Sum_probs=83.3
Q ss_pred eeeeEecCCc-cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEE-------EECCccccc------c
Q 027590 80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTY-------ILDGDNCRH------G 144 (221)
Q Consensus 80 ~~~~~~~~~~-~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~-------~l~g~~~~~------~ 144 (221)
+|++++|+.. .+++++| ++++||+++|+||||||||||+|+|+|++ |++|++.. .++|.++.. .
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence 7889999876 4899999 99999999999999999999999999998 67888410 245655432 1
Q ss_pred ccccceeeccChHHHHH----HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 145 LNRDLSFKAEDRVENIR----RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~~----~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
.+..+++++|+...... ++.+....... ...+.+ ....... ....++.+.+||+|++||+.++++...+.
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~-~~~~~~----~L~~lgL-~~~~~~~~~~LSGGekQRvaIAraL~~~P 247 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE-VGKFEE----VVKELEL-ENVLDRELHQLSGGELQRVAIAAALLRKA 247 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC-SSCHHH----HHHHTTC-TTGGGSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred hhcceEEeechhhhchhhccccHHHHhhhhHH-HHHHHH----HHHHcCC-CchhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 12356777776432110 22222211000 000000 0000000 11233446789999999999999877653
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.44 E-value=7.3e-15 Score=136.59 Aligned_cols=132 Identities=15% Similarity=0.083 Sum_probs=81.9
Q ss_pred eeeeEecCCc-cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEE-------EECCccccc------c
Q 027590 80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTY-------ILDGDNCRH------G 144 (221)
Q Consensus 80 ~~~~~~~~~~-~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~-------~l~g~~~~~------~ 144 (221)
+|++++|+.. .+++++| ++++||+++|+||||||||||+|+|+|++ |++|++.. .++|.++.. .
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHT
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHH
Confidence 5788889876 4899999 99999999999999999999999999998 67887310 245655432 1
Q ss_pred ccccceeeccChHHHHH----HHHHHhccc--ceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhc
Q 027590 145 LNRDLSFKAEDRVENIR----RIEKIEMPA--VQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHM 218 (221)
Q Consensus 145 ~~~~ig~v~q~~~~~~~----~v~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (221)
....+++++|+...... ++.+..... .-.+..+.. .... ....++.+.+||+|++||+.++++...
T Consensus 104 ~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~-------~lgl-~~~~~~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVK-------ALEL-ENVLEREIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp TSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHH-------HTTC-TTTTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHH-------HcCC-ChhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 12357787776422100 122211100 000000000 0000 011233467889999999999998776
Q ss_pred cC
Q 027590 219 NH 220 (221)
Q Consensus 219 ~~ 220 (221)
++
T Consensus 176 ~P 177 (538)
T 1yqt_A 176 NA 177 (538)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.43 E-value=3.6e-14 Score=134.82 Aligned_cols=70 Identities=23% Similarity=0.199 Sum_probs=45.5
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHH---------------------HHHHhcc-ccCceEE-----EEECCcc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA---------------------CALSQAL-HWRGKLT-----YILDGDN 140 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl---------------------~~l~g~l-~~~G~i~-----~~l~g~~ 140 (221)
...+|++|||++++||+++|+||||||||||+ +++.++. |+.|.+. +.+++.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45789999999999999999999999999998 8888877 4534331 2566666
Q ss_pred ccccccccceeeccChH
Q 027590 141 CRHGLNRDLSFKAEDRV 157 (221)
Q Consensus 141 ~~~~~~~~ig~v~q~~~ 157 (221)
.....+..+|+++|...
T Consensus 110 ~~~~~~~~ig~v~q~~~ 126 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYD 126 (670)
T ss_dssp -----CCBHHHHTTCC-
T ss_pred hhccchhceeeeechhh
Confidence 65555667888888654
No 57
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.41 E-value=1.3e-13 Score=113.73 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=45.6
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc-----cccccceeeccChHHHH
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENI 160 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~-----~~~~~ig~v~q~~~~~~ 160 (221)
....|+++||++++|++++|+||||||||||+++|+|++| |.+ .+ |.++.. ...+.++|++|++....
T Consensus 9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p--G~i--~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (218)
T 1z6g_A 9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP--NYF--YF-SVSCTTRKKREKEKEGVDYYFIDKTIFE 81 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHHHST--TTE--EE-CCCEECSCCCSSCCBTTTBEECCHHHHH
T ss_pred ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC--CcE--EE-eecccCCCCCcccccCCeEEECCHHHHH
Confidence 3457899999999999999999999999999999999985 988 67 666532 23467999999986543
No 58
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.41 E-value=1.4e-14 Score=119.27 Aligned_cols=110 Identities=13% Similarity=0.009 Sum_probs=68.5
Q ss_pred ecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccc---ccccccceeeccChHHHH-
Q 027590 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKAEDRVENI- 160 (221)
Q Consensus 85 ~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~---~~~~~~ig~v~q~~~~~~- 160 (221)
.|+...+++++ ++|++++|+||||||||||+++|+|+.|++|++ .. .++. ...++.+||++|++.+++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I--~~--~~~~~~~~~~~~~ig~v~q~~~enl~ 80 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQV--SR--IILTRPAVEAGEKLGFLPGTLNEKID 80 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHHHHHTTSC--SE--EEEEECSCCTTCCCCSSCC------C
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcCCCcCCee--ee--EEecCCchhhhcceEEecCCHHHHHH
Confidence 36677889986 899999999999999999999999993377987 21 1221 134667999999985444
Q ss_pred HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhcc
Q 027590 161 RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMN 219 (221)
Q Consensus 161 ~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 219 (221)
........ ... . . ...+.+++.++. ..|++||+.++++...+
T Consensus 81 ~~~~~~~~-------~~~----~---~--~~~~~~~~~l~~-glGq~qrv~lAraL~~~ 122 (208)
T 3b85_A 81 PYLRPLHD-------ALR----D---M--VEPEVIPKLMEA-GIVEVAPLAYMRGRTLN 122 (208)
T ss_dssp TTTHHHHH-------HHT----T---T--SCTTHHHHHHHT-TSEEEEEGGGGTTCCBC
T ss_pred HHHHHHHH-------HHH----H---h--ccHHHHHHHHHh-CCchHHHHHHHHHHhcC
Confidence 11100000 000 0 0 012234445555 55999999999987654
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.37 E-value=1.4e-13 Score=135.02 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=79.7
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccCh
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~ 156 (221)
+...++++.|+...+++++||++++|++++|+||||||||||+|+|+| |.+ +|.+.... ..++|++|+.
T Consensus 436 L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i----~g~~~~~~--~~~~~v~q~~ 504 (986)
T 2iw3_A 436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV----DGFPTQEE--CRTVYVEHDI 504 (986)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS----TTCCCTTT--SCEEETTCCC
T ss_pred eEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc----CCCccccc--eeEEEEcccc
Confidence 444589999998899999999999999999999999999999999996 432 33322111 1357777653
Q ss_pred HH-HH-HHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 157 VE-NI-RRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 157 ~~-~~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
.. .. .++.+......... ..................++.+..||+|++||+.++++...+.
T Consensus 505 ~~~~~~ltv~e~l~~~~~~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P 567 (986)
T 2iw3_A 505 DGTHSDTSVLDFVFESGVGT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNA 567 (986)
T ss_dssp CCCCTTSBHHHHHHTTCSSC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTC
T ss_pred cccccCCcHHHHHHHhhcCH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 10 00 01222211100000 0000111111122123445667789999999999999876553
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.32 E-value=3.3e-13 Score=128.21 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=32.7
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHH
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~ 123 (221)
...+|+++||+|++||+++|+||||||||||+++|.
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 346899999999999999999999999999998654
No 61
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.31 E-value=5.6e-14 Score=132.26 Aligned_cols=129 Identities=15% Similarity=0.178 Sum_probs=74.8
Q ss_pred eeeeEecCC-ccccccceeEeeCC-----cEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccccccccceee
Q 027590 80 TNILWHKNS-VDKRDRQQLLQQKG-----CVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFK 152 (221)
Q Consensus 80 ~~~~~~~~~-~~~l~~vsl~i~~G-----e~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~~~~~ig~v 152 (221)
.++.+.|.. ..+++++||++.+| |+++|+||||||||||+++|+|++ |++|+. +. ...++|+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~---~~--------~~~i~~~ 418 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD---IP--------KLNVSMK 418 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC---CC--------SCCEEEE
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC---cc--------CCcEEEe
Confidence 445566754 35789999999998 789999999999999999999999 577863 11 2357888
Q ss_pred ccChHHHHH-HHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhhccC
Q 027590 153 AEDRVENIR-RIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIHMNH 220 (221)
Q Consensus 153 ~q~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (221)
+|+...... ++.+.+................+..... ..+.+++...+||+|++||++++++...+.
T Consensus 419 ~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~LSGGqkQRv~iAraL~~~p 486 (608)
T 3j16_B 419 PQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR-IDDIIDQEVQHLSGGELQRVAIVLALGIPA 486 (608)
T ss_dssp CSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT-STTTSSSBSSSCCHHHHHHHHHHHHTTSCC
T ss_pred cccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC-ChhhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 887421110 1222111100000000000000000000 001122334578999999999999877653
No 62
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.28 E-value=1e-12 Score=119.24 Aligned_cols=78 Identities=21% Similarity=0.133 Sum_probs=66.0
Q ss_pred cceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCc---cccc------
Q 027590 75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD---NCRH------ 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~---~~~~------ 143 (221)
+.++..++++.|+ ...+++++ |++.+|++++|+||||||||||+++|+|+. ++.|.+ .++|+ ++..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i--~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV--GLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE--EEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEE--EEeceecHHHHHHHHhhc
Confidence 4677788888886 67899999 999999999999999999999999999998 577877 78887 4532
Q ss_pred ---cccccceeeccC
Q 027590 144 ---GLNRDLSFKAED 155 (221)
Q Consensus 144 ---~~~~~ig~v~q~ 155 (221)
.+++.++|++|+
T Consensus 207 ~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 207 GPDGRARSVVIAAPA 221 (438)
T ss_dssp HHHHHHTEEEEEECT
T ss_pred cccccCceEEEEECC
Confidence 255779999985
No 63
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.26 E-value=2.1e-12 Score=111.82 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=53.1
Q ss_pred ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc--------c--cccceeeccChH
Q 027590 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG--------L--NRDLSFKAEDRV 157 (221)
Q Consensus 91 ~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~--------~--~~~ig~v~q~~~ 157 (221)
+++++||++++|++++|+|||||||||+++.|+|++ +..|++ .++|.++... + +..++|++|+..
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V--~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~ 164 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV--LMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD 164 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE--EEECCCCSCHHHHHHHHHHHHHHTCEEECCC--
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE--EEEeecccchhHHHHHHHHHHhcCceEEEecCC
Confidence 346789999999999999999999999999999999 578999 7888776431 1 346999999765
No 64
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.24 E-value=1.7e-12 Score=120.01 Aligned_cols=128 Identities=11% Similarity=0.074 Sum_probs=83.9
Q ss_pred eeeeeEecCCcccccccee-EeeCCcEEEEEcCCCCcHHHHHHH--HHhccc-cCceEEEEECCccccc---ccccccee
Q 027590 79 STNILWHKNSVDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACA--LSQALH-WRGKLTYILDGDNCRH---GLNRDLSF 151 (221)
Q Consensus 79 ~~~~~~~~~~~~~l~~vsl-~i~~Ge~i~i~G~sGsGKSTLl~~--l~g~l~-~~G~i~~~l~g~~~~~---~~~~~ig~ 151 (221)
..++...++..++|++++| .+++|++++|+||||||||||+++ ++|+++ .+|.+ +++|++... ...+.+||
T Consensus 15 ~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i--~v~g~~~~~~~~~~~~~~g~ 92 (525)
T 1tf7_A 15 HQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV--FVTFEETPQDIIKNARSFGW 92 (525)
T ss_dssp CSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEE--EEESSSCHHHHHHHHGGGTC
T ss_pred ccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEE--EEEEeCCHHHHHHHHHHcCC
Confidence 3334433457889999999 999999999999999999999999 789985 88988 888877432 23467899
Q ss_pred eccChHHHHHHHHHHhcccceeeehhhhhcccccccchhhHHHHHHHHHHHhhhcchhHHHhhhhh
Q 027590 152 KAEDRVENIRRIEKIEMPAVQCCQKEISLRCSWMCHFKCVRQGTQRAFTSLHEKGRSRVLLGLMIH 217 (221)
Q Consensus 152 v~q~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (221)
++|++...- . +....... ........... ...+...+...+++.++++++.++....
T Consensus 93 ~~q~~~~~~-~---l~~~~~~~----~~~~~~~l~~~-~l~~~~~~~~~~LS~g~~~~lilDe~t~ 149 (525)
T 1tf7_A 93 DLAKLVDEG-K---LFILDASP----DPEGQEVVGGF-DLSALIERINYAIQKYRARRVSIDSVTS 149 (525)
T ss_dssp CHHHHHHTT-S---EEEEECCC----CSSCCSCCSSH-HHHHHHHHHHHHHHHHTCSEEEEECSTT
T ss_pred ChHHhhccC-c---EEEEecCc----ccchhhhhccc-CHHHHHHHHHHHHHHcCCCEEEECCHHH
Confidence 999865210 0 00000000 00000011111 1234567777888888888888776543
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.24 E-value=3.4e-13 Score=123.11 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=57.7
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCc-e-EEEEECCcccccccccccee
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG-K-LTYILDGDNCRHGLNRDLSF 151 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G-~-i~~~l~g~~~~~~~~~~ig~ 151 (221)
++++..|+++.|+ ++||++++|++++|+||||||||||+|+|+|++ |++| + + +++|+ .++.++|
T Consensus 117 ~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI--~vdg~-----~~~~i~~ 183 (460)
T 2npi_A 117 TMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPL--YINLD-----PQQPIFT 183 (460)
T ss_dssp THHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCE--EEECC-----TTSCSSS
T ss_pred chhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeE--EEcCC-----ccCCeee
Confidence 3566667766664 799999999999999999999999999999998 6889 8 7 78873 3567899
Q ss_pred eccCh
Q 027590 152 KAEDR 156 (221)
Q Consensus 152 v~q~~ 156 (221)
++|+.
T Consensus 184 vpq~~ 188 (460)
T 2npi_A 184 VPGCI 188 (460)
T ss_dssp CSSCC
T ss_pred eccch
Confidence 99975
No 66
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.24 E-value=2.4e-12 Score=107.58 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=26.4
Q ss_pred cCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 86 ~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+..++++++||++++|++++|+||||||||||+++|++++
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999987
No 67
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.22 E-value=7.6e-13 Score=116.21 Aligned_cols=79 Identities=25% Similarity=0.156 Sum_probs=65.7
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--------ccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------GLN 146 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------~~~ 146 (221)
+++..++++.|+...+++++||++.+|++++|+|+||||||||+++|+|++ +..|++ .+.+.+... ..+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v--~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV--AVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE--EEEEECGGGGSSCCCSSCCG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE--EEEEEcCcccccccchHHHh
Confidence 466777777787778999999999999999999999999999999999998 578998 666766532 245
Q ss_pred ccceeeccCh
Q 027590 147 RDLSFKAEDR 156 (221)
Q Consensus 147 ~~ig~v~q~~ 156 (221)
..++|++|++
T Consensus 107 ~~i~~v~q~~ 116 (337)
T 2qm8_A 107 TRMARLAIDR 116 (337)
T ss_dssp GGSTTGGGCT
T ss_pred hhheeeccCc
Confidence 6689999864
No 68
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.22 E-value=5.5e-12 Score=102.66 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=41.0
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccc----cccccccceeeccChHHH
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC----RHGLNRDLSFKAEDRVEN 159 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~----~~~~~~~ig~v~q~~~~~ 159 (221)
..++++ .++++|++++|+||||||||||+++|+|+++ .+ .+++... .....+.++|++|++...
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~---~i--~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 76 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP---NL--HFSVSATTRAPRPGEVDGVDYHFIDPTRF 76 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST---TC--EECCCEESSCCCTTCCBTTTBEECCHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC---ce--EEcccccccCCcccccCCCeeEecCHHHH
Confidence 346666 6899999999999999999999999999986 23 3333221 122346799999998653
No 69
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.20 E-value=1e-12 Score=114.10 Aligned_cols=54 Identities=20% Similarity=0.115 Sum_probs=50.0
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceE
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i 132 (221)
.++.+++++.|+ .++|+++||++++|++++|+||||||||||+++|+|++ +|+|
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I 154 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSV 154 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEE
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceE
Confidence 467788888887 67999999999999999999999999999999999999 8998
No 70
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.19 E-value=4.9e-12 Score=107.32 Aligned_cols=61 Identities=25% Similarity=0.208 Sum_probs=50.2
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-cc-CceEEEEECCccccccccccceeecc
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW-RGKLTYILDGDNCRHGLNRDLSFKAE 154 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~-~G~i~~~l~g~~~~~~~~~~ig~v~q 154 (221)
++++++| +++|++++|+||||||||||+++|+|++ |+ +|+| .++|+++.......+++++|
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I--~~~g~~i~~~~~~~~~~v~q 77 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI--ITIEDPIEYVFKHKKSIVNQ 77 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEE--EEEESSCCSCCCCSSSEEEE
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEE--EEcCCcceeecCCcceeeeH
Confidence 5889998 8999999999999999999999999998 56 8999 77887765433444556665
No 71
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.18 E-value=7.9e-12 Score=110.75 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=53.0
Q ss_pred ccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc----------ccccceeeccChH
Q 027590 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG----------LNRDLSFKAEDRV 157 (221)
Q Consensus 93 ~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~----------~~~~ig~v~q~~~ 157 (221)
+.+||++++|++++|+|||||||||+++.|+|++ +..|++ .++|.++.+. .+..++|++|+..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V--~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~ 221 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV--LMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD 221 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE--EEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEE--EEecccccccchhHHHHHHHHhcCeEEEEeccc
Confidence 4689999999999999999999999999999999 578998 7888876431 1346999998754
No 72
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.17 E-value=3.9e-11 Score=96.48 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=44.5
Q ss_pred eeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc----cccccceeeccChHHHH
Q 027590 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVENI 160 (221)
Q Consensus 96 sl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~----~~~~~ig~v~q~~~~~~ 160 (221)
|+++.+|++++|+||||||||||+++|++++| .+ .+++..+.. .....++|++|++....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---EI--KISISHTTRPKRPGDQEGVDYFFIDETRFQ 64 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---SE--EECCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---Ce--EEeceeccCCCchhHhcCceEEeccHHHHH
Confidence 56778999999999999999999999999975 34 566665543 23456899999876543
No 73
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.15 E-value=1.6e-12 Score=110.82 Aligned_cols=105 Identities=14% Similarity=0.051 Sum_probs=53.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc-cccccceeeccChHHHHH-HHHHHhcccceeeehhhhh
Q 027590 104 VIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH-GLNRDLSFKAEDRVENIR-RIEKIEMPAVQCCQKEISL 180 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~-~~~~~ig~v~q~~~~~~~-~v~~~~~~g~~~~~~~~~~ 180 (221)
.++|+||||||||||+++|+|+. |++|++ .++|+++.. ...+.++|++|+...... ++.+...+|.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i--~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~----- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASS--WNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN----- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC-----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCcc--ccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc-----
Confidence 58999999999999999999998 688999 889988754 345679999997542111 22222222211000
Q ss_pred cccccc-cchhhHHHHHHHHHHHhhhcchhHHHhhh
Q 027590 181 RCSWMC-HFKCVRQGTQRAFTSLHEKGRSRVLLGLM 215 (221)
Q Consensus 181 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (221)
...|.. ..-......+....+++.|++||+.++++
T Consensus 77 ~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRa 112 (270)
T 3sop_A 77 ENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRV 112 (270)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSC
T ss_pred HHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhhee
Confidence 000100 01111334455677889999999888765
No 74
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.15 E-value=6.4e-12 Score=110.06 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=51.8
Q ss_pred ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--cccccceeecc
Q 027590 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--GLNRDLSFKAE 154 (221)
Q Consensus 91 ~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--~~~~~ig~v~q 154 (221)
++++++|.+++|++++|+||||||||||+++|+|++ |++|.+ .++|.+... ..++.++++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i--~i~~~~e~~~~~~~~~i~~~~g 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII--SIEDTEEIVFKHHKNYTQLFFG 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE--EEESSCCCCCSSCSSEEEEECB
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE--EECCeeccccccchhEEEEEeC
Confidence 789999999999999999999999999999999999 577988 778765322 24556788854
No 75
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.12 E-value=2.5e-11 Score=111.27 Aligned_cols=51 Identities=20% Similarity=0.078 Sum_probs=47.3
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccc
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCR 142 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~ 142 (221)
..+++++||++++ ++++|+||||||||||+++|+|++ |++|++ .++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I--~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLL--NFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTC--CCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEE--EECCEEcc
Confidence 4679999999999 999999999999999999999998 688999 89998875
No 76
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.11 E-value=4.5e-11 Score=98.88 Aligned_cols=61 Identities=20% Similarity=0.125 Sum_probs=47.3
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhccc---cCceEEEEECCccccccccccceeeccChHHHH
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~---~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~ 160 (221)
..++|++++|+||||||||||+++|+|+++ ..|.+ .+.+++.+....+.++|+||++....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v--~~ttr~~~~~e~~gi~y~fq~~~~f~ 75 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSV--SHTTRQPRPGEVHGEHYFFVNHDEFK 75 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECC--CEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEE--EecCCCCCcccccCceEEECCHHHHH
Confidence 468999999999999999999999999986 35777 56676655444567999999986543
No 77
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.10 E-value=2.1e-11 Score=107.57 Aligned_cols=62 Identities=27% Similarity=0.037 Sum_probs=52.6
Q ss_pred ceeeeeeeEecC-CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcc
Q 027590 76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (221)
Q Consensus 76 ~~~~~~~~~~~~-~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~ 140 (221)
.++..++++.|+ ...+++++ |++.+|++++|+|+||||||||+++|+|++ ++.|.+ .+.|++
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i--~~~G~~ 108 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVL--ALIGER 108 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE--EEESCC
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEE--EEeccc
Confidence 455666777776 67899999 999999999999999999999999999998 566876 666765
No 78
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.08 E-value=1.9e-11 Score=108.24 Aligned_cols=64 Identities=20% Similarity=0.113 Sum_probs=50.0
Q ss_pred cccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccc-cc-cccccceeec-cChH
Q 027590 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC-RH-GLNRDLSFKA-EDRV 157 (221)
Q Consensus 92 l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~-~~-~~~~~ig~v~-q~~~ 157 (221)
++++||.+++|++++|+||||||||||+++|++++ |+.|.+ .++|..- .. ..++.++|++ |+..
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I--~ie~~~e~~~~~~~~~v~~v~~q~~~ 232 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI--TIEDVPELFLPDHPNHVHLFYPSEAK 232 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE--EEESSSCCCCTTCSSEEEEECC----
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE--EECCccccCccccCCEEEEeecCccc
Confidence 39999999999999999999999999999999999 477988 6776432 11 2456789998 6643
No 79
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.08 E-value=5.4e-12 Score=109.21 Aligned_cols=75 Identities=17% Similarity=0.083 Sum_probs=58.1
Q ss_pred ccceeeeeeeEecCCccccccceeEe-------------------eCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCce
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQ-------------------QKGCVIWITGLSGSGKSTLACALSQAL---HWRGK 131 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i-------------------~~Ge~i~i~G~sGsGKSTLl~~l~g~l---~~~G~ 131 (221)
...++++++++.| .++++++++.+ .+|++++|+|+||||||||+++|++++ |++|.
T Consensus 35 ~~~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 35 NEDLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp CTTCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred ccccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 3456677777777 36889999988 899999999999999999999999986 46798
Q ss_pred EEEEE---CCccccccccccceee
Q 027590 132 LTYIL---DGDNCRHGLNRDLSFK 152 (221)
Q Consensus 132 i~~~l---~g~~~~~~~~~~ig~v 152 (221)
+ .+ ||........+.+|++
T Consensus 113 i--~vi~~d~~~~~~~~~~~~~~v 134 (308)
T 1sq5_A 113 V--ELITTDGFLHPNQVLKERGLM 134 (308)
T ss_dssp E--EEEEGGGGBCCHHHHHHHTCT
T ss_pred E--EEEecCCccCcHHHHHhCCEe
Confidence 8 56 7766433233446666
No 80
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.08 E-value=5.3e-11 Score=109.20 Aligned_cols=63 Identities=17% Similarity=0.301 Sum_probs=51.9
Q ss_pred cccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc----------cccccceeeccCh
Q 027590 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH----------GLNRDLSFKAEDR 156 (221)
Q Consensus 92 l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~----------~~~~~ig~v~q~~ 156 (221)
.+++||++++|++++|+|+||||||||+++|+|++ +..|++ .+++.+... ..+..++|++|+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V--~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~ 356 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV--MLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT 356 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE--EEECCCTTCHHHHHHHHHHHHHHTCCEECCST
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeE--EEecCcccchhhHHHHHHHHHhcCceEEeccc
Confidence 46899999999999999999999999999999999 577998 666555432 1356799999974
No 81
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.06 E-value=1.5e-10 Score=92.05 Aligned_cols=57 Identities=25% Similarity=0.238 Sum_probs=45.9
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccccc--ccccceeeccChH
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAEDRV 157 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~--~~~~ig~v~q~~~ 157 (221)
.+++|++++|+||||||||||+++|++. +..|.+ .++++++... ....++|++|+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i--~i~~d~~~~~~~~~~~~~~~~~~~~ 63 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-PGVPKV--HFHSDDLWGYIKHGRIDPWLPQSHQ 63 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-SSSCEE--EECTTHHHHTCCSSCCCTTSSSHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-cCCCeE--EEcccchhhhhhcccccCCccchhh
Confidence 3689999999999999999999999998 667888 8899887542 2234688888654
No 82
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.04 E-value=2.6e-11 Score=109.23 Aligned_cols=52 Identities=23% Similarity=0.173 Sum_probs=44.9
Q ss_pred CccccccceeEeeCCc--------------------EEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccc
Q 027590 88 SVDKRDRQQLLQQKGC--------------------VIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNC 141 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge--------------------~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~ 141 (221)
+..+++++||++++|+ +++|+||||||||||+++|+|++ |++|++ .++|.++
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI--~~~g~~~ 107 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAA--KTGVVEV 107 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSC--CCCC---
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceE--EECCeec
Confidence 3468999999999999 99999999999999999999998 588998 7787665
No 83
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.01 E-value=2e-10 Score=90.84 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=26.6
Q ss_pred cceeEeeCCcEEEEEcCCCCcHHHHHHH
Q 027590 94 RQQLLQQKGCVIWITGLSGSGKSTLACA 121 (221)
Q Consensus 94 ~vsl~i~~Ge~i~i~G~sGsGKSTLl~~ 121 (221)
++||++++||+++|+||||||||||+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHH
Confidence 5899999999999999999999999993
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.00 E-value=3.2e-11 Score=104.85 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=29.5
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQAL-HWRG 130 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G 130 (221)
+++|++++|+||||||||||+++|+|++ |..|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 8999999999999999999999999999 4545
No 85
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=7.6e-11 Score=106.50 Aligned_cols=43 Identities=26% Similarity=0.183 Sum_probs=36.5
Q ss_pred eEecCCccccccceeEeeCCcE--EEEEcCCCCcHHHHHHHHHhcc
Q 027590 83 LWHKNSVDKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 83 ~~~~~~~~~l~~vsl~i~~Ge~--i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++|+..+ ++++||++++|++ ++|+|+||||||||+++|+|+.
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 56677777 9999999999999 9999999999999999999984
No 86
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.98 E-value=2.9e-10 Score=105.87 Aligned_cols=71 Identities=41% Similarity=0.614 Sum_probs=55.9
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCc-eEEEEECCccccccccccceeeccChHHHHHHHHHHhcc
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKIEMP 169 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G-~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~~~~~ 169 (221)
.+++|++++|+|+||||||||+++|++.+ +..| .+ ++++|+++...+.+.++|..+++.+++++++++++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i-~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~ 437 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCV-TLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE 437 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCE-EEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceE-EEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999 5665 45 258999887656667787776666666666665543
No 87
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.96 E-value=2.7e-10 Score=107.27 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=43.8
Q ss_pred eeeeEecCCc-cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceE
Q 027590 80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (221)
Q Consensus 80 ~~~~~~~~~~-~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i 132 (221)
++++++|+.. ..+++++ .+++||+++|+||||||||||+|+|+|++ |++|++
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 3577888755 3566665 68999999999999999999999999999 688986
No 88
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.95 E-value=2.8e-11 Score=100.78 Aligned_cols=57 Identities=23% Similarity=0.197 Sum_probs=40.6
Q ss_pred eeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc------------cccccceeeccC
Q 027590 96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH------------GLNRDLSFKAED 155 (221)
Q Consensus 96 sl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~------------~~~~~ig~v~q~ 155 (221)
++++.+ ++++|+||||||||||+++|++++ |++|.| .++|.++.. .++..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i--~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL--HFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeE--EECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999 688999 888887721 235678999975
No 89
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.95 E-value=5.2e-10 Score=96.90 Aligned_cols=54 Identities=19% Similarity=0.299 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcccccc----------ccccceeeccCh
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHG----------LNRDLSFKAEDR 156 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~~----------~~~~ig~v~q~~ 156 (221)
+|++++|+||||||||||++.|++++ |+.|++ .+.|.++... .+..++|++|+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V--~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~ 165 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV--MFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPE 165 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCE--EEECCCCSSTTTTHHHHHHHHHHTCCEECCCT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE--EEEeecCCChhHHHHHHHHHHhcCceEEEeCC
Confidence 79999999999999999999999999 678998 7888887431 135689999975
No 90
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.95 E-value=1.6e-10 Score=93.50 Aligned_cols=51 Identities=27% Similarity=0.389 Sum_probs=42.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc--cccccceeeccC
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--GLNRDLSFKAED 155 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~--~~~~~ig~v~q~ 155 (221)
|++++|+||||||||||+++|+|+++++| + .++|.+..+ ..++.+||++|+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i--~~~g~~~~~~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-V--PVDGFYTEEVRQGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-C--CCEEEECCEEETTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-E--EEcCEecchhHhhhceEEEEEEe
Confidence 78999999999999999999999988778 7 677766543 356778999987
No 91
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.94 E-value=3.7e-10 Score=93.10 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=22.9
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHH-hccc
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS-QALH 127 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~-g~l~ 127 (221)
.+-.+++||++++|++++|+||||||||||+++|+ ++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35678999999999999999999999999999999 9874
No 92
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.92 E-value=1.3e-10 Score=104.91 Aligned_cols=74 Identities=22% Similarity=0.207 Sum_probs=56.8
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc--------ccc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH--------GLN 146 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~--------~~~ 146 (221)
.+.+.++.+.|+...+++++ + .++|++++|+||||||||||+++|.+++ +++|+| .+.++++.. .+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I--~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI--LTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE--EEEESSCCSCCSSSEEEECB
T ss_pred CCCHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE--EEecccchhccCCcceEEEc
Confidence 45666777777666788888 5 3899999999999999999999999998 577998 666766531 234
Q ss_pred ccceeec
Q 027590 147 RDLSFKA 153 (221)
Q Consensus 147 ~~ig~v~ 153 (221)
.++++++
T Consensus 219 ~~~g~~f 225 (418)
T 1p9r_A 219 PRVDMTF 225 (418)
T ss_dssp GGGTBCH
T ss_pred cccCcCH
Confidence 5566665
No 93
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.90 E-value=4.3e-10 Score=96.97 Aligned_cols=59 Identities=24% Similarity=0.203 Sum_probs=40.3
Q ss_pred eEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEE---CCcccccc---c-cccceeeccChH
Q 027590 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYIL---DGDNCRHG---L-NRDLSFKAEDRV 157 (221)
Q Consensus 97 l~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l---~g~~~~~~---~-~~~ig~v~q~~~ 157 (221)
|++.+|++++|+||||||||||+++|+|++ |+.|.+ .+ +|+++... . .+.+||++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i--~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV--SEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC---------------CCCSCCEEECTTSCEEESSCS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccce--ecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence 456789999999999999999999999998 688998 77 78777541 1 236899999874
No 94
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.89 E-value=9.1e-10 Score=87.05 Aligned_cols=66 Identities=53% Similarity=0.965 Sum_probs=52.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccChHHHHHHHHH
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEK 165 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~ 165 (221)
++|++++|+|++||||||+++.|++.++..|...+.++++.+.+.+...++|.++++.+.++++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAE 68 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHH
Confidence 579999999999999999999999998556743336788888766666678888888777765543
No 95
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.88 E-value=5.5e-10 Score=99.51 Aligned_cols=39 Identities=28% Similarity=0.304 Sum_probs=35.3
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
+...+++++|++.+| +++|+|+||||||||+++|.+++.
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 346789999999999 999999999999999999987763
No 96
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.88 E-value=7.1e-10 Score=98.52 Aligned_cols=60 Identities=23% Similarity=0.186 Sum_probs=48.1
Q ss_pred ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-cc-CceEEEEECCccccccccccceeecc
Q 027590 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HW-RGKLTYILDGDNCRHGLNRDLSFKAE 154 (221)
Q Consensus 91 ~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~-~G~i~~~l~g~~~~~~~~~~ig~v~q 154 (221)
++++++ +++|++++|+||||||||||+++|++++ ++ +|+| .+.++++....+..++|++|
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I--~~~e~~~e~~~~~~~~~v~Q 188 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI--ITIEDPIEYVFKHKKSIVNQ 188 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE--EEEESSCCSCCCCSSSEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE--EEecccHhhhhccCceEEEe
Confidence 556554 7899999999999999999999999998 45 7998 55555654345667888988
No 97
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.86 E-value=2.2e-10 Score=96.68 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=36.7
Q ss_pred cceeeeee-eEec-CCccccccceeEeeC---CcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 75 TVAKSTNI-LWHK-NSVDKRDRQQLLQQK---GCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 75 ~~~~~~~~-~~~~-~~~~~l~~vsl~i~~---Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++++.|+ ++.| +...+++++||++.+ |++++|+|++||||||++++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46788888 8888 778899999999999 9999999999999999999999976
No 98
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.86 E-value=8.5e-10 Score=90.90 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=40.1
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHH--hcc-ccCceEEEEECCccccc---cccccceeeccC
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALS--QAL-HWRGKLTYILDGDNCRH---GLNRDLSFKAED 155 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~--g~l-~~~G~i~~~l~g~~~~~---~~~~~ig~v~q~ 155 (221)
.+++|++++|+||||||||||+++|+ +++ +..|.+ ++++..... ...+.+||++|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~ 87 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGV--FVTLEERARDLRREMASFGWDFEK 87 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEE--EEESSSCHHHHHHHHHTTTCCHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEE--EEEccCCHHHHHHHHHHcCCChHH
Confidence 58999999999999999999999999 664 455555 555544322 223456666654
No 99
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.83 E-value=1.3e-09 Score=87.89 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=42.6
Q ss_pred eeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccccc---ccccceeeccChH
Q 027590 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAEDRV 157 (221)
Q Consensus 96 sl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~---~~~~ig~v~q~~~ 157 (221)
.+..++|++++|+|+||||||||+++|++.+ |.+ +++++++... ....+|+++|+..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~--~i~~d~~~~~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---GLE--FAEADAFHSPENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---CCE--EEEGGGGSCHHHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCe--EEcccccccHHHHHHHhcCCCCCCcc
Confidence 3556789999999999999999999999987 777 7888887531 2234688888753
No 100
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.82 E-value=2.8e-09 Score=85.48 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=38.0
Q ss_pred eEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCc-eEEEEECCccccccccccceeeccChHH
Q 027590 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVE 158 (221)
Q Consensus 97 l~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G-~i~~~l~g~~~~~~~~~~ig~v~q~~~~ 158 (221)
+++.+|++++|+|+|||||||++++|++++ |..| .+ ..............++|++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSI--SMTTRQMREGEVDGVDYFFKTRDA 62 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCC--CEECSCCCTTCCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEec--ccccCCCCCCccCCCceEEcCHHH
Confidence 357899999999999999999999999998 5434 22 111111111122347788887643
No 101
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.78 E-value=1.1e-09 Score=93.38 Aligned_cols=49 Identities=27% Similarity=0.199 Sum_probs=42.1
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCc-eEEEEECC
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRG-KLTYILDG 138 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G-~i~~~l~g 138 (221)
..+|+++++.+++|++++|+|+||||||||++.|++.+ +..| .+. ++++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~-~~~~ 72 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG-LAML 72 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE-EEES
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE-EEeC
Confidence 46899999999999999999999999999999999998 4657 553 3444
No 102
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.77 E-value=2.8e-09 Score=91.95 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=41.8
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEE---CCccccc---ccc-ccceeeccChH
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYIL---DGDNCRH---GLN-RDLSFKAEDRV 157 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l---~g~~~~~---~~~-~~ig~v~q~~~ 157 (221)
.+.+|++++|+||||||||||+++|. ++ +..|.+ .+ +|++++. ... +.+||++|++.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i--~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg 225 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEV--SEKTERGRHTTTGVRLIPFGKGSFVGDTPG 225 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC-----------CCCCEEEEEETTTEEEESSCC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCccccc--ccccCCCCCceeeEEEEEcCCCcEEEECcC
Confidence 44679999999999999999999999 87 688999 77 7877654 122 36899999873
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.76 E-value=2.9e-09 Score=91.84 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=26.1
Q ss_pred eeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc-c-ccCceEEEEECCccccccc-cccceeeccC
Q 027590 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA-L-HWRGKLTYILDGDNCRHGL-NRDLSFKAED 155 (221)
Q Consensus 80 ~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~-l-~~~G~i~~~l~g~~~~~~~-~~~ig~v~q~ 155 (221)
.|+++.|+...++++++|++ +|+|+||+|||||+++|.|. + +++| + .++|.++.... .+.+++++|.
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i--~~~g~~~~~t~~~~~~~~~~q~ 71 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-I--SGAAEKIERTVQIEASTVEIEE 71 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC-
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-c--ccCCcccCCcceEeeEEEEecC
Confidence 35677888889999999998 99999999999999999987 5 5677 5 56666553311 2345666654
No 104
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.76 E-value=6.6e-10 Score=104.60 Aligned_cols=55 Identities=22% Similarity=0.131 Sum_probs=38.6
Q ss_pred eEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-c-cCceEEEEECCcccc-------ccccccceeeccCh
Q 027590 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL-H-WRGKLTYILDGDNCR-------HGLNRDLSFKAEDR 156 (221)
Q Consensus 97 l~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~-~~G~i~~~l~g~~~~-------~~~~~~ig~v~q~~ 156 (221)
++++. ++|+|+||||||||+++|+|++ | ++|.+ .++|.++. ..+++.+||++|+.
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~v--t~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 106 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIV--TRCPLVLKLKKLVNEDKWRGKVSYQDYEI 106 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC-------C--CCSCEEEEEEECSSSSCCEEEESCC---C
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeE--EEcCEEEEEecCCccccceeEEeeecccc
Confidence 44544 9999999999999999999998 7 68998 88998852 14567899999974
No 105
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.75 E-value=4.4e-09 Score=97.68 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=37.6
Q ss_pred eeEecCCccccccceeE-eeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceE
Q 027590 82 ILWHKNSVDKRDRQQLL-QQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKL 132 (221)
Q Consensus 82 ~~~~~~~~~~l~~vsl~-i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i 132 (221)
...+|+... ++-..|. .++||+++|+||||||||||+|+|+|++ |+.|++
T Consensus 5 ~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 5 VIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp EEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 445675331 2222233 3699999999999999999999999998 688976
No 106
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.73 E-value=1.4e-09 Score=91.25 Aligned_cols=54 Identities=26% Similarity=0.217 Sum_probs=43.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHH---hcc-ccCceEEEE--------ECCccccc-----cccccceeeccC
Q 027590 100 QKGCVIWITGLSGSGKSTLACALS---QAL-HWRGKLTYI--------LDGDNCRH-----GLNRDLSFKAED 155 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~---g~l-~~~G~i~~~--------l~g~~~~~-----~~~~~ig~v~q~ 155 (221)
++|++++|+|||||||||++++|+ |+. +++|.+ + .+|.++.. .+.+.+++++|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i--~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAI--YRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH--HHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCce--ehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 789999999999999999999999 887 577887 6 67776632 355667887753
No 107
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.73 E-value=6.2e-09 Score=91.04 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=38.6
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCccccc
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRH 143 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~~~~ 143 (221)
..++|++++|+|||||||||+++.|++++ +..|++ .+.|.++..
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V--~l~g~D~~r 169 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV--VIAASDTFR 169 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE--EEEEECCSS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEE--EEEeecccc
Confidence 34789999999999999999999999999 678998 788887753
No 108
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.73 E-value=7.7e-09 Score=82.48 Aligned_cols=27 Identities=41% Similarity=0.331 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALHW 128 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~~ 128 (221)
|++++|+||||||||||+++|++++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 578999999999999999999999863
No 109
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.71 E-value=8.3e-09 Score=81.48 Aligned_cols=38 Identities=32% Similarity=0.367 Sum_probs=33.4
Q ss_pred ccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCce
Q 027590 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGK 131 (221)
Q Consensus 93 ~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~ 131 (221)
+++++++.+| +.+|+|+||||||||+++|.+++ +..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 6889999999 99999999999999999999988 44443
No 110
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.71 E-value=4.7e-09 Score=85.18 Aligned_cols=42 Identities=33% Similarity=0.389 Sum_probs=35.4
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhcccc----CceEEEEECCcccc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCR 142 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~----~G~i~~~l~g~~~~ 142 (221)
.++|++++|+||||||||||+++|++++++ .|.+ .++|..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v--~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV--PMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEE--ESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE--ecCCCcCC
Confidence 578999999999999999999999999953 3555 67777664
No 111
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.71 E-value=1.9e-09 Score=93.46 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=35.6
Q ss_pred eEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEE---CCccccc---cccccceeeccCh
Q 027590 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYIL---DGDNCRH---GLNRDLSFKAEDR 156 (221)
Q Consensus 97 l~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l---~g~~~~~---~~~~~ig~v~q~~ 156 (221)
+++.+|++++|+|+||+|||||+++|.|.+ +..|.+ .+ +|+.++. .....+||++|.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I--~~~~~~G~~tt~~~~~~~~~~g~v~dtp 232 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI--SEHLGRGKHTTRHVELIHTSGGLVADTP 232 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccce--eeecCCCcccccHHHHhhcCCEEEecCC
Confidence 667899999999999999999999999998 678998 66 6766643 1222379999976
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.71 E-value=1e-08 Score=90.61 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=37.0
Q ss_pred Ccccccccee-------EeeCCcEEEEEcCCCCcHHHHHHHHHhccc-c-CceE
Q 027590 88 SVDKRDRQQL-------LQQKGCVIWITGLSGSGKSTLACALSQALH-W-RGKL 132 (221)
Q Consensus 88 ~~~~l~~vsl-------~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~-~G~i 132 (221)
....++++.+ ...+|++++|+||||||||||+++|.++++ + .|.+
T Consensus 102 ~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i 155 (356)
T 3jvv_A 102 KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI 155 (356)
T ss_dssp SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence 3455666665 678899999999999999999999999994 5 4665
No 113
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.69 E-value=1.9e-08 Score=79.86 Aligned_cols=68 Identities=37% Similarity=0.634 Sum_probs=50.0
Q ss_pred eEeeCCcEEEEEcCCCCcHHHHHHHHHhcccc-CceEEEEECCccccccccccceeeccChHHHHHHHHH
Q 027590 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEK 165 (221)
Q Consensus 97 l~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~-~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~ 165 (221)
+...+|.+++|+|++||||||+++.|+..+.. .+.+ ++++++.+...+....+|..+++.+.+..+..
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~ 76 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV-EVLDGDWARTTVSEGAGFTREERLRHLKRIAW 76 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE-EEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE-EEeeHHHHHHHHhhccCCChhhHHHHHHHHHH
Confidence 34568999999999999999999999999854 4444 35778777665555667777666655554433
No 114
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.69 E-value=1.2e-08 Score=82.93 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=27.3
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-+++|++++|+||||||||||+++|++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999999965
No 115
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.67 E-value=1.2e-08 Score=82.47 Aligned_cols=29 Identities=48% Similarity=0.516 Sum_probs=25.8
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
.++|++++|+|+||||||||+++|++++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999999999874
No 116
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.66 E-value=7e-09 Score=95.77 Aligned_cols=50 Identities=14% Similarity=0.047 Sum_probs=43.4
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCcc
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDN 140 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~ 140 (221)
..+++++++.+++|+.++|+||||||||||+++|+++++ +.|.+ .++|.+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gii--tied~~ 297 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVV--SIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEE--EEESSC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEE--EEcCcc
Confidence 356789999999999999999999999999999999995 67877 666654
No 117
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.66 E-value=9e-09 Score=81.86 Aligned_cols=49 Identities=24% Similarity=0.250 Sum_probs=38.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccCh
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~ 156 (221)
|++++|+||||||||||++.|++ +..|.+ +++++++... ..+++++|..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--~~~g~~--~i~~d~~~~~--~~~~~~~~~~ 50 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--QLDNSA--YIEGDIINHM--VVGGYRPPWE 50 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--HSSSEE--EEEHHHHHTT--CCTTCCCGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--ccCCeE--EEcccchhhh--hccccccCcc
Confidence 68999999999999999999987 556877 7888877542 2356666643
No 118
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.65 E-value=6.8e-09 Score=82.94 Aligned_cols=47 Identities=26% Similarity=0.232 Sum_probs=32.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc----cccccceeeccCh
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR 156 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~----~~~~~ig~v~q~~ 156 (221)
.++|+||||||||||+++|+|++. + .++|.+... ...+.+||++|+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i--~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----K--RAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----G--GEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----C--cCCCEEhhhhccccccceeEEEeecC
Confidence 589999999999999999999984 2 233332211 2356789998875
No 119
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.65 E-value=2.2e-08 Score=79.45 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
.+|++++|+||||||||||+++|.+.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999875
No 120
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=1.3e-08 Score=81.94 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=25.2
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
...+++++||++.+|++++|+|++||||||+++.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999877
No 121
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.63 E-value=4.3e-09 Score=85.55 Aligned_cols=77 Identities=53% Similarity=0.814 Sum_probs=55.4
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccccccccccceeeccChHHHHHHHH
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIE 164 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~ 164 (221)
..+...+-.+.+++|.+++|+|++||||||+++.|.+.++ ..|...++++++++...+....+|..+++.+.++.+.
T Consensus 11 ~~~~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~ 88 (211)
T 1m7g_A 11 ALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIA 88 (211)
T ss_dssp CCCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHH
T ss_pred ccCHHHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHH
Confidence 3344445556789999999999999999999999999985 6783223788888766554445565566666655443
No 122
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.62 E-value=3.6e-09 Score=90.05 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=43.8
Q ss_pred cCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccc
Q 027590 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (221)
Q Consensus 86 ~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~ 142 (221)
+....+++++++.+++| ++|+||||||||||+++|++.+.. +.+ .++|.++.
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i--~i~g~~l~ 81 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFI--SVKGPELL 81 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEE--EEETTTTC
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEE--EEEcHHHH
Confidence 45567889999999999 999999999999999999998743 555 78887764
No 123
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.62 E-value=5e-09 Score=87.28 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=45.5
Q ss_pred eeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccc
Q 027590 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (221)
Q Consensus 81 ~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~ 142 (221)
++...|+...+++++++.+++| +.|+||||||||||+++|++.+. .|.+ .+++.++.
T Consensus 30 ~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i--~~~~~~~~ 86 (254)
T 1ixz_A 30 EIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFI--TASGSDFV 86 (254)
T ss_dssp HHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEE--EEEHHHHH
T ss_pred HHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEE--EeeHHHHH
Confidence 3333455567889999999999 89999999999999999999875 5666 67776653
No 124
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.61 E-value=7.6e-09 Score=83.00 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=35.5
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++++|+++.|+ ..++++ |.+.+|..++|+|+||||||||++.|+|..
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356778888886 467777 889999999999999999999999999976
No 125
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.61 E-value=2.9e-08 Score=97.24 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=36.5
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHH
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~ 123 (221)
++++++++ ...|+++||++++|++++|+|+||||||||++.|.
T Consensus 629 ~L~v~~l~-----~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 629 WLEVVGAR-----EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEEEEC-----SSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEEEecCc-----ccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 45666654 24699999999999999999999999999999853
No 126
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.61 E-value=2.5e-08 Score=88.13 Aligned_cols=62 Identities=19% Similarity=0.090 Sum_probs=40.5
Q ss_pred ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc--cCceEEEEEC-CccccccccccceeeccC
Q 027590 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WRGKLTYILD-GDNCRHGLNRDLSFKAED 155 (221)
Q Consensus 91 ~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~--~~G~i~~~l~-g~~~~~~~~~~ig~v~q~ 155 (221)
-++++++. .+|++++|+|+||||||||+++|.|.+. ..|.+ .++ |..........+++++|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I--~~~~G~g~~tt~~~~i~~v~q~ 269 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDV--SNVSGLGQHTTTAARLYHFPHG 269 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------CCCEEEECTTS
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCc--cccCCCCccceEEEEEEEECCC
Confidence 35566664 4899999999999999999999999974 56988 554 654433345567888875
No 127
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.59 E-value=6.5e-09 Score=87.95 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=46.4
Q ss_pred eeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccc
Q 027590 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (221)
Q Consensus 80 ~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~ 142 (221)
.++...|+...+++++++.+++| ++|+||||||||||+++|++.+. .|.+ .+++.++.
T Consensus 53 ~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i--~~~~~~~~ 110 (278)
T 1iy2_A 53 KEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFI--TASGSDFV 110 (278)
T ss_dssp HHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEE--EEEHHHHH
T ss_pred HHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEE--EecHHHHH
Confidence 33444455667889999999999 88999999999999999999875 5666 67776653
No 128
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.59 E-value=2.4e-08 Score=90.05 Aligned_cols=48 Identities=21% Similarity=0.100 Sum_probs=38.4
Q ss_pred ccceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
...+.+.++++.|+...++++++|+| +|+|+||||||||+++|+|...
T Consensus 9 ~~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp ------CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred cCcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 34677888999999889999999998 9999999999999999999873
No 129
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.59 E-value=1.6e-08 Score=98.22 Aligned_cols=47 Identities=32% Similarity=0.379 Sum_probs=39.9
Q ss_pred cceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHH-HHhcc
Q 027590 75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACA-LSQAL 126 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~-l~g~l 126 (221)
.+++++++++ ..|+++||+|++|++++|+|+||||||||++. |.|++
T Consensus 501 ~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 501 GWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp CEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 3567777763 36999999999999999999999999999996 77664
No 130
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.59 E-value=3.2e-08 Score=79.95 Aligned_cols=28 Identities=36% Similarity=0.335 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999874
No 131
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.58 E-value=3.1e-08 Score=98.17 Aligned_cols=51 Identities=18% Similarity=0.055 Sum_probs=41.5
Q ss_pred cceeeee-----eeEec-CCccccccceeEeeC-------CcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 75 TVAKSTN-----ILWHK-NSVDKRDRQQLLQQK-------GCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 75 ~~~~~~~-----~~~~~-~~~~~l~~vsl~i~~-------Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+.+++.+ +.+.| +...++++++|.+.+ |++++|+||||||||||+|++ |++
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 4677888 77777 667899999999987 999999999999999999999 886
No 132
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.57 E-value=2.7e-08 Score=80.58 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=39.5
Q ss_pred Ccccccccee-EeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEE
Q 027590 88 SVDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLT 133 (221)
Q Consensus 88 ~~~~l~~vsl-~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~ 133 (221)
..+.|+++.. .+++|++++|+||||||||||++.+++.+ +..|.+.
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~ 55 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI 55 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3567788887 79999999999999999999999999887 5667774
No 133
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.57 E-value=1.1e-08 Score=90.19 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=46.8
Q ss_pred cccceeEeeC--CcEEEEEcCCCCcHHHHHHHHHhcc-ccC----ceEEEEE----CCcccc---ccccccceeeccCh
Q 027590 92 RDRQQLLQQK--GCVIWITGLSGSGKSTLACALSQAL-HWR----GKLTYIL----DGDNCR---HGLNRDLSFKAEDR 156 (221)
Q Consensus 92 l~~vsl~i~~--Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~----G~i~~~l----~g~~~~---~~~~~~ig~v~q~~ 156 (221)
.+.|++++.+ |+.++|+|+||||||||+++|+|++ ++. |++ ++ +|.++. ..+ ..|++++|+.
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i--~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGRE--FVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHH--HHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHH--HHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 4679999999 9999999999999999999999998 577 877 54 233331 112 3467766654
No 134
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.56 E-value=3.5e-08 Score=96.55 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=29.3
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHH
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl 119 (221)
...|+++||++++|++++|+|+||||||||+
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 4579999999999999999999999999997
No 135
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.56 E-value=3.9e-08 Score=92.71 Aligned_cols=98 Identities=42% Similarity=0.797 Sum_probs=64.8
Q ss_pred eeeeeEecCCccccccceeEee----CCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeecc
Q 027590 79 STNILWHKNSVDKRDRQQLLQQ----KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE 154 (221)
Q Consensus 79 ~~~~~~~~~~~~~l~~vsl~i~----~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q 154 (221)
..|+.|....++.-++.....+ +|.+++|+|.+||||||+++.|+..+...|...+.++++.++..+....+|..+
T Consensus 25 ~~~~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~ 104 (630)
T 1x6v_B 25 ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPE 104 (630)
T ss_dssp ---------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHH
T ss_pred cccccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChh
Confidence 3456555444444444444454 788999999999999999999999886666544578988887766666667667
Q ss_pred ChHHHHHHHHHHhcc----cceeeeh
Q 027590 155 DRVENIRRIEKIEMP----AVQCCQK 176 (221)
Q Consensus 155 ~~~~~~~~v~~~~~~----g~~~~~~ 176 (221)
++.++++++.+++.. |.+++..
T Consensus 105 dree~~r~i~eva~~~l~~G~iVI~d 130 (630)
T 1x6v_B 105 DREENVRRIAEVAKLFADAGLVCITS 130 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 788888877665542 6665544
No 136
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.52 E-value=1.2e-08 Score=81.12 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc-cc---CceEEEEECCccc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL-HW---RGKLTYILDGDNC 141 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l-~~---~G~i~~~l~g~~~ 141 (221)
++++|+|+||||||||+++|.+++ +. .|.+ .++|.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I--~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVV--KRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE--EC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE--EEcCccc
Confidence 589999999999999999999999 45 5888 8888774
No 137
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.50 E-value=6.3e-08 Score=75.86 Aligned_cols=51 Identities=27% Similarity=0.374 Sum_probs=39.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccccc--cc-ccceeeccC
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LN-RDLSFKAED 155 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~--~~-~~ig~v~q~ 155 (221)
.+|++++|+|+|||||||+++.|++.+ |.+ +++++++... .. ..+|+.+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~--~i~~d~~~~~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAA--FLDGDFLHPRRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCE--EEEGGGGCCHHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcE--EEeCccccchHHHHHhhcCcCCCc
Confidence 568999999999999999999999976 777 7888877532 11 135777765
No 138
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.49 E-value=3.9e-09 Score=91.99 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=55.3
Q ss_pred eeeeeeEecCCccccccceeEeeCC-------cEEEEEcCCCCcHHHHHHHHHhcc----c-cCceEEEEECCccccc--
Q 027590 78 KSTNILWHKNSVDKRDRQQLLQQKG-------CVIWITGLSGSGKSTLACALSQAL----H-WRGKLTYILDGDNCRH-- 143 (221)
Q Consensus 78 ~~~~~~~~~~~~~~l~~vsl~i~~G-------e~i~i~G~sGsGKSTLl~~l~g~l----~-~~G~i~~~l~g~~~~~-- 143 (221)
+..++...|+...+++++++.+++| +.++|+||||+|||||+++|++.+ . .+|.+ ..++.++..
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~--~~~~~~l~~~~ 97 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV--LVKQGDMAAIL 97 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT--CCSHHHHHHHH
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH--hcCHHHHHHHH
Confidence 3344554567777889999998876 889999999999999999999987 2 44655 445544432
Q ss_pred --cccccceeeccC
Q 027590 144 --GLNRDLSFKAED 155 (221)
Q Consensus 144 --~~~~~ig~v~q~ 155 (221)
.....|.|+.|.
T Consensus 98 ~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 98 TSLERGDVLFIDEI 111 (334)
T ss_dssp HHCCTTCEEEEETG
T ss_pred HHccCCCEEEEcch
Confidence 124568888875
No 139
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.47 E-value=8.3e-08 Score=89.72 Aligned_cols=78 Identities=35% Similarity=0.538 Sum_probs=60.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhccccCc-eEEEEECCccccccccccceeeccChHHHHHHHHHHhcc----ccee
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIEKIEMP----AVQC 173 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G-~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~~~~~~----g~~~ 173 (221)
.++|.+++|+|++||||||+++.|+..+...| ..++.++++++++.+....+|...++.++++++++++.. |..+
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~V 472 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV 472 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEE
Confidence 46788999999999999999999999886545 333478998888777777888877888888877666544 5555
Q ss_pred eeh
Q 027590 174 CQK 176 (221)
Q Consensus 174 ~~~ 176 (221)
+..
T Consensus 473 I~~ 475 (573)
T 1m8p_A 473 IAA 475 (573)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 140
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.46 E-value=7e-09 Score=86.24 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---hcc-ccCceEEEEECCc
Q 027590 101 KGCVIWITGLSGSGKSTLACALS---QAL-HWRGKLTYILDGD 139 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~---g~l-~~~G~i~~~l~g~ 139 (221)
++++++|+|+||||||||+++|+ |+. ++.|.+ .+++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i--~~~~~ 66 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF--LRENI 66 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH--HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH--HHHHH
Confidence 57999999999999999999999 887 566877 55543
No 141
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.44 E-value=1.9e-07 Score=75.71 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=26.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHW 128 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~ 128 (221)
++|++++|+||||||||||++.|.+.++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999999853
No 142
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.42 E-value=1.2e-07 Score=73.43 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=34.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~ 142 (221)
+|+.++|+||||||||||++++++.+...|.-.+++++.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 899999999999999999999999986567322267776553
No 143
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.40 E-value=8.3e-08 Score=94.00 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=35.2
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
...++++++|++++|++++|+||||||||||+|+++++
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 45788999999999999999999999999999999865
No 144
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.39 E-value=1.7e-07 Score=90.24 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=36.9
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCceE
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKL 132 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l--~~~G~i 132 (221)
...+++++||+ |++++|+||||||||||+|+++|+. +..|.+
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~ 608 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF 608 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence 45688999998 9999999999999999999999986 466764
No 145
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.39 E-value=1.5e-07 Score=91.12 Aligned_cols=39 Identities=23% Similarity=0.123 Sum_probs=35.8
Q ss_pred CCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 87 ~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+...++++++|+ ++|++++|+||||||||||+|+++|+.
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 345689999999 999999999999999999999999985
No 146
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.38 E-value=1.4e-07 Score=75.98 Aligned_cols=35 Identities=43% Similarity=0.385 Sum_probs=31.0
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceE
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKL 132 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i 132 (221)
..++|++++|+|+||||||||++.|.+.++ ..|.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v 53 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV 53 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence 357899999999999999999999999985 56776
No 147
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.38 E-value=9.7e-08 Score=78.69 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=33.9
Q ss_pred eEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccc
Q 027590 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (221)
Q Consensus 97 l~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~ 141 (221)
...++|++++|.|+|||||||++++|+++ .|.+ .+.+.+.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v--~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY---KNDI--CLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG---TTTE--EEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc---cCCe--EEEecCH
Confidence 34589999999999999999999999997 6777 5666654
No 148
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.37 E-value=2.1e-07 Score=81.03 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=39.8
Q ss_pred ccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccc
Q 027590 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNC 141 (221)
Q Consensus 93 ~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~ 141 (221)
++++|++++|++++|+|+||+||||++..|++.+. ..|++ .+.+.|+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kV--llid~D~ 143 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKV--LIAAADT 143 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE--EEEECCC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE--EEEeCCC
Confidence 68899999999999999999999999999999984 66777 4444444
No 149
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.35 E-value=1.1e-07 Score=83.57 Aligned_cols=51 Identities=24% Similarity=0.250 Sum_probs=40.8
Q ss_pred cccccc-eeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc--c-cC----ceEEEEECCccc
Q 027590 90 DKRDRQ-QLLQQKGCVIWITGLSGSGKSTLACALSQAL--H-WR----GKLTYILDGDNC 141 (221)
Q Consensus 90 ~~l~~v-sl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l--~-~~----G~i~~~l~g~~~ 141 (221)
..||.+ ++.+++|+++.|+||||||||||++.+++.. + +. |.++ ++++.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi-~i~~e~~ 176 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVI-WIDTENT 176 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEE-EEESSSC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEE-EEeCCCC
Confidence 456655 6889999999999999999999999999997 3 33 5632 6787664
No 150
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.35 E-value=2.2e-07 Score=91.25 Aligned_cols=43 Identities=26% Similarity=0.235 Sum_probs=36.6
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHH
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~ 123 (221)
++++++++ ...|+++||++++|++++|+|+||||||||+++|.
T Consensus 647 ~L~v~~l~-----~~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 647 QLTVVGAR-----EHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred eEEEecCc-----cccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 46666654 23699999999999999999999999999999853
No 151
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.35 E-value=1.2e-07 Score=74.81 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=34.4
Q ss_pred eeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECC
Q 027590 96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (221)
Q Consensus 96 sl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g 138 (221)
+|.+.+|+.++|+||||||||||++++++.+ +..|..+++++.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 4566789999999999999999999999998 477743334443
No 152
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.30 E-value=4.5e-07 Score=78.53 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=29.2
Q ss_pred ccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 93 ~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++++++.+| +.+|+|+||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 3678888899 99999999999999999999654
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.30 E-value=2e-07 Score=80.08 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=44.3
Q ss_pred eeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCcccc
Q 027590 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCR 142 (221)
Q Consensus 79 ~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~ 142 (221)
.+++.+.|+... ++++|+ +|++++|+|+||+||||+++.|++.+. ..|++ .+.+.+..
T Consensus 79 ~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v--~l~~~d~~ 137 (295)
T 1ls1_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP--LLVAADTQ 137 (295)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCE--EEEECCSS
T ss_pred HHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE--EEecCCcc
Confidence 344555565432 678888 999999999999999999999999995 66777 55555543
No 154
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.30 E-value=2.9e-07 Score=90.37 Aligned_cols=35 Identities=23% Similarity=0.070 Sum_probs=32.6
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHH
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL 122 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l 122 (221)
...++++++|++.+|++++|+|||||||||++|++
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 34678899999999999999999999999999999
No 155
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.27 E-value=6.6e-08 Score=84.29 Aligned_cols=50 Identities=18% Similarity=0.088 Sum_probs=40.3
Q ss_pred eEecCCccccccceeEeeCCc------EEEEEcCCCCcHHHHHHHHHhccc---cCceE
Q 027590 83 LWHKNSVDKRDRQQLLQQKGC------VIWITGLSGSGKSTLACALSQALH---WRGKL 132 (221)
Q Consensus 83 ~~~~~~~~~l~~vsl~i~~Ge------~i~i~G~sGsGKSTLl~~l~g~l~---~~G~i 132 (221)
+..|+...++.+++..+.+++ +++|+||||||||||+++|.+++. ..|.+
T Consensus 67 ~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 67 SFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 344667777888887776665 999999999999999999999984 35665
No 156
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.24 E-value=8.9e-07 Score=72.34 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=32.6
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhc--ccc------CceEEEEECCcc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQA--LHW------RGKLTYILDGDN 140 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~--l~~------~G~i~~~l~g~~ 140 (221)
+++|++++|+||||||||||++.+++. +++ .|.+ ++++.+
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~--~i~~~~ 68 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAM--YIDTEG 68 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEE--EEESSS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEE--EEECCC
Confidence 799999999999999999999999994 432 3444 677765
No 157
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.24 E-value=2.2e-07 Score=82.72 Aligned_cols=42 Identities=31% Similarity=0.181 Sum_probs=37.7
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceE
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i 132 (221)
..+++++++.+++|++++|+||||||||||+++|++.+ .|.+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--~g~~ 197 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--GGKA 197 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--CCEE
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--CCcE
Confidence 36789999999999999999999999999999999964 5665
No 158
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.24 E-value=6.1e-07 Score=79.23 Aligned_cols=37 Identities=32% Similarity=0.353 Sum_probs=31.6
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
...++++++++.+| +++|+||||||||||+.+|+..+
T Consensus 11 f~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 11 FLGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp ETTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCccceEEecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 34556788999999 78899999999999999999664
No 159
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.24 E-value=1.2e-07 Score=77.08 Aligned_cols=31 Identities=45% Similarity=0.538 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc----ccCceE
Q 027590 102 GCVIWITGLSGSGKSTLACALSQAL----HWRGKL 132 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l----~~~G~i 132 (221)
+.+++|+|+|||||||+++.|++.+ ++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i 39 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcce
Confidence 5689999999999999999999865 255766
No 160
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.23 E-value=5.9e-07 Score=77.70 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=37.2
Q ss_pred cceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccc
Q 027590 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNC 141 (221)
Q Consensus 94 ~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~ 141 (221)
.+++...+|++++|+|+|||||||+++.|++.+. ..|++ .+.+.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV--~lv~~D~ 142 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV--VLAAADT 142 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE--EEEEECT
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEE--EEEcccc
Confidence 3566678999999999999999999999999994 56677 4444444
No 161
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.22 E-value=1.1e-06 Score=77.63 Aligned_cols=36 Identities=28% Similarity=0.229 Sum_probs=32.8
Q ss_pred CccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 88 ~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
+...+++++|++.+| +++|+||||||||||+++|.+
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 13 NYRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SBTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 345678999999999 999999999999999999997
No 162
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.22 E-value=4.9e-07 Score=83.39 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=32.4
Q ss_pred eeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCce
Q 027590 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (221)
Q Consensus 96 sl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~ 131 (221)
+..+.+|++++|+|+||||||||++.+++..+..|.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~ 310 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKE 310 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 458999999999999999999999999999865565
No 163
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.21 E-value=5.6e-07 Score=70.02 Aligned_cols=49 Identities=27% Similarity=0.368 Sum_probs=35.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc-cccccceeecc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GLNRDLSFKAE 154 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~-~~~~~ig~v~q 154 (221)
.|++++|+|+|||||||+++.|++.+. .. +++++.+.. .....+++++|
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~---~~--~id~d~~~~~~~~~~i~~i~~ 52 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN---ME--FYDSDQEIEKRTGADVGWVFD 52 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT---CE--EEEHHHHHHHHHTSCHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC---CC--EEeccHHHHHHhCcCHHHHHH
Confidence 467899999999999999999999873 24 567655432 12334555555
No 164
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.18 E-value=8.3e-07 Score=83.24 Aligned_cols=72 Identities=11% Similarity=0.046 Sum_probs=57.5
Q ss_pred ecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cC-ceEEEEECCccccccccccceeeccChHHH
Q 027590 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR-GKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159 (221)
Q Consensus 85 ~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~-G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~ 159 (221)
-|+...+++.+++.+.+|+.+.|+||||||||||+++|+++++ .. |.+ .+++.... .....++++++.....
T Consensus 43 i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~--~~~~~~~~-~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDI--LVFPNPED-ENMPRIKTVPACQGRR 116 (604)
T ss_dssp CCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEE--EEECCTTC-TTSCEEEEEETTHHHH
T ss_pred EECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeE--EEeCCccc-ccCCcEEEEecchHHH
Confidence 3577789999999999999999999999999999999999995 44 555 55555543 3455688988876443
No 165
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.17 E-value=5.3e-07 Score=78.09 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc---------ccCceEEEEECCcccc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL---------HWRGKLTYILDGDNCR 142 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l---------~~~G~i~~~l~g~~~~ 142 (221)
++++|+|+||||||||++.|.+.. ++.|++ .+||.++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i--~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEV--SVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSC--CEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCccc--CccHHHHh
Confidence 589999999999999999999985 367988 77887764
No 166
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.17 E-value=9.5e-07 Score=71.79 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=26.8
Q ss_pred eeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 96 sl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
++..-+|++++|+||||||||||++.|.+..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44556899999999999999999999998765
No 167
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.13 E-value=2.1e-07 Score=81.44 Aligned_cols=56 Identities=23% Similarity=0.103 Sum_probs=45.5
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceE
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKL 132 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i 132 (221)
++..+....|+...+++++++.+.+|.+++|+|++|+|||||++.|++.+. ..+++
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v 87 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 444444445666678899999999999999999999999999999999884 55555
No 168
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.12 E-value=1.6e-06 Score=77.84 Aligned_cols=45 Identities=27% Similarity=0.225 Sum_probs=34.1
Q ss_pred eeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
+++.|+ ..|+... .+++.+|++++|+||||||||||+++|++++.
T Consensus 7 l~~~~~-~~~~~~~-----~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 7 LELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEeCE-EEECCce-----eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 345555 3554321 25567899999999999999999999999873
No 169
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.12 E-value=1.3e-06 Score=70.31 Aligned_cols=31 Identities=39% Similarity=0.453 Sum_probs=27.7
Q ss_pred eEeeCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 97 LLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 97 l~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
-++.+|.+++|+|+|||||||+++.|.+.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3468899999999999999999999999763
No 170
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.10 E-value=2.7e-07 Score=85.64 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=44.6
Q ss_pred eeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECC
Q 027590 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDG 138 (221)
Q Consensus 79 ~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g 138 (221)
.+++...+....++.++++.+ +|+.++|+||||+|||||+++|++.+ ++.|.+ .+.+
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i--~~~~ 143 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI--SLGG 143 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE--CCCC
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE--Eecc
Confidence 344444555566788888888 89999999999999999999999998 455665 4444
No 171
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.09 E-value=1.3e-06 Score=70.34 Aligned_cols=48 Identities=23% Similarity=0.148 Sum_probs=36.3
Q ss_pred ccccccee-EeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcc
Q 027590 90 DKRDRQQL-LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (221)
Q Consensus 90 ~~l~~vsl-~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~ 140 (221)
+.||.+.. -+++|++++|+|+||||||||++.+++ ...+.+. +++.+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~-~i~~~~ 55 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVA-YVDTEG 55 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEE-EEESSC
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEE-EEECCC
Confidence 45555554 589999999999999999999999999 4334443 566543
No 172
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.04 E-value=2.4e-06 Score=76.53 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=32.4
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHH--Hhcccc-----CceEEEEECCccc
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACAL--SQALHW-----RGKLTYILDGDNC 141 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l--~g~l~~-----~G~i~~~l~g~~~ 141 (221)
-+++|+++.|+||||||||||++.+ ++.+|+ .|.+ ++++++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~v-iyid~E~~ 223 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKC-LYIDTEGT 223 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEE-EEEESSSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcE-EEEeCCCc
Confidence 4799999999999999999999955 455553 2333 36887763
No 173
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.03 E-value=1.4e-06 Score=78.36 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=33.4
Q ss_pred ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 91 ~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-.++++|+++.|+.++|+|+||||||||+++|++..
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 347999999999999999999999999999999983
No 174
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.03 E-value=2.5e-06 Score=70.46 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=29.2
Q ss_pred ccccceeEee---CCcEEEEEcCCCCcHHHHHHHHHhccccCceE
Q 027590 91 KRDRQQLLQQ---KGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (221)
Q Consensus 91 ~l~~vsl~i~---~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i 132 (221)
-+.++++++. +|.+++|.|++||||||+++.|...+...+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~ 56 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDV 56 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCc
Confidence 4566677666 99999999999999999999999998543333
No 175
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.02 E-value=4.1e-06 Score=70.69 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=27.1
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
+++|++++|+||||||||||++.+++.+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 68999999999999999999999999764
No 176
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.98 E-value=4.2e-06 Score=66.39 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc------------cCceEEEEECCccc
Q 027590 104 VIWITGLSGSGKSTLACALSQALH------------WRGKLTYILDGDNC 141 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~------------~~G~i~~~l~g~~~ 141 (221)
.++|+|+||||||||++.+.+... ..|.+ .++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i--~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI--QVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEE--EETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEE--EECCEEE
Confidence 689999999999999999999863 23555 6777654
No 177
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.97 E-value=3.4e-06 Score=70.36 Aligned_cols=43 Identities=28% Similarity=0.470 Sum_probs=35.7
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~ 143 (221)
..+++.+++|+|+|||||||+++.|...+. .+.+ .++++.++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~--~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIV--IIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCE--EECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcE--EEecHHHHH
Confidence 467889999999999999999999998774 2445 789988765
No 178
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.94 E-value=4e-06 Score=67.10 Aligned_cols=37 Identities=35% Similarity=0.504 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~ 142 (221)
.+.+++|+|++||||||+++.|++.+ |.. .++++.+.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l---g~~--~i~~d~~~ 53 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC---GYP--FIEGDALH 53 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH---TCC--EEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCE--EEeCCcCc
Confidence 35689999999999999999999877 444 66776664
No 179
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.92 E-value=5.3e-06 Score=65.70 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=26.7
Q ss_pred cceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 94 ~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
++|+...+|..++|+|++||||||+++.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999886
No 180
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.91 E-value=8.3e-06 Score=62.92 Aligned_cols=32 Identities=34% Similarity=0.426 Sum_probs=25.4
Q ss_pred cceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 94 ~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 344555554 89999999999999999998655
No 181
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.90 E-value=6.8e-06 Score=72.51 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=40.0
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCccccc-cccccceeecc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH-GLNRDLSFKAE 154 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~~~~~-~~~~~ig~v~q 154 (221)
+++|+++.|.||+|||||||+..++..+. ..|.+. ++++..... ...+.+|+.+|
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~Vl-yId~E~s~~~~ra~rlgv~~~ 114 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAA-FIDAEHALDPVYAKNLGVDLK 114 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESSCCCCHHHHHHHTCCGG
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEE-EEecccccchHHHHHcCCchh
Confidence 68999999999999999999999999884 556654 567665332 23334444443
No 182
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.89 E-value=7.6e-06 Score=70.28 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=32.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGD 139 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~ 139 (221)
.+|++++|+|+|||||||+++.|++.+. ..|.-+.+++.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5799999999999999999999999995 678332244443
No 183
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.89 E-value=5.2e-06 Score=71.74 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=24.3
Q ss_pred EEEEcCCCCcHHHHHHHHHh-cc-ccCceEEEEECCcccc
Q 027590 105 IWITGLSGSGKSTLACALSQ-AL-HWRGKLTYILDGDNCR 142 (221)
Q Consensus 105 i~i~G~sGsGKSTLl~~l~g-~l-~~~G~i~~~l~g~~~~ 142 (221)
+.|+||||+||||+++++++ ++ +..|.+ .++|.++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i--~~~~~~~~ 76 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRL--KIDVRQFV 76 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeE--Eecceeec
Confidence 89999999999999999999 55 567887 77776553
No 184
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.88 E-value=5.6e-06 Score=66.54 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=26.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
..+|.+++|+||||||||||++.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999988764
No 185
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.88 E-value=7.3e-06 Score=73.17 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=32.6
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHh------------cc-ccCceEEEEECCc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQ------------AL-HWRGKLTYILDGD 139 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g------------~l-~~~G~i~~~l~g~ 139 (221)
+.+|..++|+|+||+|||||+++|+| .+ |..|.+ .+.|.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v--~v~~~ 68 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKV--AVPDE 68 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEE--EECCH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeee--eeCCc
Confidence 47899999999999999999999999 44 456777 66663
No 186
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.88 E-value=6.1e-06 Score=67.36 Aligned_cols=50 Identities=12% Similarity=0.049 Sum_probs=35.3
Q ss_pred ccccccc-eeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCc
Q 027590 89 VDKRDRQ-QLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGD 139 (221)
Q Consensus 89 ~~~l~~v-sl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~ 139 (221)
.+.||++ .--+++|+++.|+|+||||||||+..++... +..+.+. +++.+
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~-~~~~e 60 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGI-YVALE 60 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE-EEESS
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEE-EEEcc
Confidence 3445555 4558999999999999999999977665554 4444543 45544
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.85 E-value=5.7e-06 Score=66.29 Aligned_cols=32 Identities=34% Similarity=0.530 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccc
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~ 141 (221)
+++|+|+|||||||+++.|+++ |.. +++.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l----g~~--~id~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL----GVP--LVDADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT----TCC--EEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC----CCc--ccchHHH
Confidence 6899999999999999999983 554 4555443
No 188
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.84 E-value=7.9e-06 Score=75.90 Aligned_cols=65 Identities=45% Similarity=0.751 Sum_probs=48.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccChHHHHHHHH
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIE 164 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~ 164 (221)
+.|.+++|+|++||||||+++.|...+...|..+++++++.+++.+....+|...++..+++++.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~ 434 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVG 434 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHH
Confidence 45789999999999999999999998865665445789888776665666666555655554443
No 189
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.83 E-value=6e-06 Score=74.48 Aligned_cols=47 Identities=21% Similarity=0.182 Sum_probs=37.4
Q ss_pred eeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceE
Q 027590 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKL 132 (221)
Q Consensus 82 ~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i 132 (221)
+...|+... ++++|+ +|++++|+|+|||||||++..|++.+. ..+++
T Consensus 82 L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~V 129 (425)
T 2ffh_A 82 LKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP 129 (425)
T ss_dssp HHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred HHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 344454433 678887 899999999999999999999999995 55666
No 190
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.82 E-value=1e-05 Score=63.01 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
|.+++|+|++||||||+++.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998774
No 191
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.82 E-value=9.1e-06 Score=69.61 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=26.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHW 128 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~ 128 (221)
.++.+++|+|+||||||||++.|.+++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57889999999999999999999999854
No 192
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.79 E-value=1.3e-05 Score=63.74 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|+||||||||++.+.+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 193
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.79 E-value=1e-05 Score=74.40 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=42.1
Q ss_pred cCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccc
Q 027590 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (221)
Q Consensus 86 ~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~ 142 (221)
+....+++++++.+++| +.|+||||+|||||+++|++.+. .+.+ .+++.++.
T Consensus 50 l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i--~i~g~~~~ 101 (499)
T 2dhr_A 50 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFI--TASGSDFV 101 (499)
T ss_dssp HHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEE--EEEGGGGT
T ss_pred hhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEE--EEehhHHH
Confidence 44556788999999999 88999999999999999999874 4555 67776653
No 194
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.78 E-value=8.6e-06 Score=72.72 Aligned_cols=52 Identities=15% Similarity=0.040 Sum_probs=44.5
Q ss_pred cceeeeeeeEecC-Cccccc--------------cceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 75 TVAKSTNILWHKN-SVDKRD--------------RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 75 ~~~~~~~~~~~~~-~~~~l~--------------~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.-...+|+++.|. ....++ |+.+.+.+|+.++|+|++|+|||||++.|++.+
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3455667777775 456777 899999999999999999999999999999987
No 195
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.73 E-value=1.4e-05 Score=62.63 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+|.+++|+|++||||||+++.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999998644
No 196
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.72 E-value=1.7e-05 Score=63.33 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 027590 104 VIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g 124 (221)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.71 E-value=1.9e-05 Score=69.20 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=29.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEE
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLT 133 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~ 133 (221)
+++.+++|+|++|||||||++.|.+.+ +..|++.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~ 106 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLS 106 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 457899999999999999999999987 4666663
No 198
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.70 E-value=8.8e-06 Score=74.84 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=32.1
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
...++++++++.+| +.+|+|+||||||||+.+|..+
T Consensus 48 f~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp BTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 34667899999999 9999999999999999999766
No 199
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.68 E-value=2.2e-05 Score=76.35 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=28.1
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHH
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl 119 (221)
.=|++|+++|+++++++|+|.||||||||+
T Consensus 24 hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 24 HNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred cCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 347899999999999999999999999997
No 200
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.67 E-value=2e-05 Score=60.66 Aligned_cols=23 Identities=39% Similarity=0.411 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++|+|++||||||+++.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 201
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.65 E-value=5.4e-06 Score=71.82 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=37.3
Q ss_pred cCCccccccceeEeeCCcE--EEEEcCCCCcHHHHHHHHHhccc
Q 027590 86 KNSVDKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 86 ~~~~~~l~~vsl~i~~Ge~--i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
++...+++.++..++.|++ +.|.||+|+||||+++++++.+.
T Consensus 28 ~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4566788888888999998 99999999999999999999873
No 202
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.64 E-value=1.9e-05 Score=67.86 Aligned_cols=39 Identities=26% Similarity=0.216 Sum_probs=33.7
Q ss_pred cc-ceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceE
Q 027590 93 DR-QQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKL 132 (221)
Q Consensus 93 ~~-vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i 132 (221)
++ ++++.+ |++++++|++|+||||++..|++.+. ..+++
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v 129 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV 129 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 45 788876 99999999999999999999999985 55666
No 203
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.61 E-value=3e-05 Score=76.28 Aligned_cols=30 Identities=43% Similarity=0.530 Sum_probs=28.0
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHH
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl 119 (221)
.=|+|||++|+++++++|+|.||||||||+
T Consensus 34 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 34 HNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred cccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 448899999999999999999999999986
No 204
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.61 E-value=4.2e-05 Score=61.80 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=25.0
Q ss_pred cceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 94 ~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+.++.+.+ .+.+|+|||||||||++.+|.-.+
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555 489999999999999999987554
No 205
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.61 E-value=2.5e-05 Score=61.95 Aligned_cols=35 Identities=46% Similarity=0.468 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~ 141 (221)
+..+++|+|++||||||+++.|+.. |.. +++.+++
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~----g~~--~id~d~~ 41 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW----GYP--VLDLDAL 41 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT----TCC--EEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC----CCE--EEcccHH
Confidence 4568999999999999999999985 655 5565544
No 206
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.60 E-value=3.1e-05 Score=75.96 Aligned_cols=31 Identities=39% Similarity=0.553 Sum_probs=28.3
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHH
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl 119 (221)
..=|+||+++|+++++++|+|.||||||||+
T Consensus 31 ~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred cccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 3458899999999999999999999999986
No 207
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.60 E-value=0.0001 Score=71.35 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=33.9
Q ss_pred eEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccc
Q 027590 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (221)
Q Consensus 97 l~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~ 142 (221)
|.+++|+.+.|+||||||||||+++|++.++. ..+.+++.++.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~---~~i~v~~~~l~ 275 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGPEIM 275 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC---EEEEEEHHHHS
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---cEEEEEchHhh
Confidence 46789999999999999999999999998742 12256665543
No 208
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.60 E-value=3.5e-05 Score=64.42 Aligned_cols=43 Identities=33% Similarity=0.380 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~ 143 (221)
++.+++|+|++||||||+++.|...+...|...+.++++.+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 4678999999999999999999988755565533457776654
No 209
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.59 E-value=1e-05 Score=71.31 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=33.2
Q ss_pred cccccceeEeeCCcE--EEEEcCCCCcHHHHHHHHHhcc
Q 027590 90 DKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~--i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+++.+++.+++|++ +.|+|++||||||++++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467788888899988 9999999999999999999986
No 210
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.59 E-value=3.3e-05 Score=60.70 Aligned_cols=39 Identities=33% Similarity=0.466 Sum_probs=30.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~ 143 (221)
.++.+++|+|++||||||+++.|...+ |.. +++.+.+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l---~~~--~i~~D~~~~ 41 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL---RLP--LLSKDAFKE 41 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH---TCC--EEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc---CCe--EecHHHHHH
Confidence 467899999999999999999998766 333 455555543
No 211
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.58 E-value=3.5e-05 Score=60.28 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALHWRG 130 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G 130 (221)
|.+++|+|++||||||+++.|+..+...|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999998776555
No 212
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.58 E-value=2.8e-05 Score=76.24 Aligned_cols=30 Identities=40% Similarity=0.500 Sum_probs=28.1
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHH
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl 119 (221)
.=|+||+++|+++++++|+|+||||||||+
T Consensus 12 hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 12 HNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred cccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 458899999999999999999999999997
No 213
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.56 E-value=4e-05 Score=67.03 Aligned_cols=34 Identities=18% Similarity=0.051 Sum_probs=27.3
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
..++++++++++ .++|+|++|||||||++.|.|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 468889988888 8999999999999999999994
No 214
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.55 E-value=4.6e-05 Score=64.94 Aligned_cols=41 Identities=22% Similarity=0.435 Sum_probs=32.0
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~ 142 (221)
..+|.+++|+|||||||||+++.|...++ .+.. .++++.++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~--~Is~D~~R 70 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVI--VIDNDTFK 70 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCE--EECTHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeE--EEechHhH
Confidence 35678999999999999999999987654 2445 67776554
No 215
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.53 E-value=5.3e-05 Score=60.24 Aligned_cols=32 Identities=34% Similarity=0.543 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCceE
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i 132 (221)
+|.+++|.|++||||||+++.|...+...|.+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~ 34 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDV 34 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCE
Confidence 46789999999999999999999987655543
No 216
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.52 E-value=4.9e-05 Score=66.09 Aligned_cols=31 Identities=35% Similarity=0.443 Sum_probs=24.0
Q ss_pred ceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 95 vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
..+.+.+| +.+|+||||||||||+.+|...+
T Consensus 17 ~~i~f~~~-~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEcCCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 34455554 88999999999999999985533
No 217
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.52 E-value=4.7e-05 Score=62.53 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=24.7
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-.+|.+++|+|++||||||+++.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4788999999999999999999999743
No 218
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.52 E-value=4.7e-05 Score=59.62 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+..++|+|++||||||+++.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998766
No 219
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.52 E-value=6.2e-05 Score=66.04 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=32.9
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhcc-ccCceEEEEECCcc
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDN 140 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~~G~i~~~l~g~~ 140 (221)
-+++|+++.|.|++|||||||+..++... ...|.+. +++.+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vl-yi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAA-FIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE-EEECCC
Confidence 36899999999999999999999988776 4445554 465543
No 220
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.51 E-value=4.9e-05 Score=58.15 Aligned_cols=19 Identities=63% Similarity=0.844 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 027590 104 VIWITGLSGSGKSTLACAL 122 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l 122 (221)
+++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 221
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.49 E-value=5.1e-05 Score=60.20 Aligned_cols=27 Identities=33% Similarity=0.273 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALHW 128 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~~ 128 (221)
-.+++|+|+||||||||++.|.+.++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 358999999999999999999998753
No 222
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.47 E-value=5.2e-05 Score=59.09 Aligned_cols=33 Identities=48% Similarity=0.576 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccc
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~ 141 (221)
.++|+|++||||||+++.|+..+ |.. +++.+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~~~--~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---DLV--FLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---TCE--EEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCC--EEcccHH
Confidence 58999999999999999999876 333 5665554
No 223
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.47 E-value=3.7e-05 Score=60.11 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++.+++|+|++||||||+++.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998665
No 224
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.47 E-value=5.5e-05 Score=60.42 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=26.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRG 130 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G 130 (221)
++|.+++|+|++||||||+++.|...+...|
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5788999999999999999999998764333
No 225
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.47 E-value=7.1e-05 Score=59.37 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+|.+++|+|++||||||+++.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
No 226
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.46 E-value=6.4e-05 Score=60.00 Aligned_cols=28 Identities=43% Similarity=0.481 Sum_probs=25.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
.+|.+++|+|++||||||+++.|...+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998763
No 227
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.45 E-value=6e-05 Score=62.64 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
++-+++|+||+||||||+++.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 228
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.45 E-value=6.7e-05 Score=69.11 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=34.5
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhcccc-C-ceEEEEECCcc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQALHW-R-GKLTYILDGDN 140 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~-~-G~i~~~l~g~~ 140 (221)
.+.|.+++|+|.+||||||++++|+..+.. . |+.++++||++
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 367889999999999999999999999953 4 44445788876
No 229
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.44 E-value=7.6e-05 Score=57.78 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccc
Q 027590 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~ 142 (221)
.+++|+|++||||||+++.|... ..|.. .++.+.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~--~~~~~--~i~~d~~r 38 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK--NPGFY--NINRDDYR 38 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--STTEE--EECHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh--cCCcE--EecHHHHH
Confidence 47899999999999999999872 12444 55554443
No 230
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.44 E-value=7.3e-05 Score=58.07 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
++|..++|+|++|+|||||++.+.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999863
No 231
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.43 E-value=2.1e-05 Score=62.66 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=30.7
Q ss_pred EecCC-ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 84 WHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 84 ~~~~~-~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
|.|++ ..+++++|+..++.+ ++|+|++|+|||||++.+.+
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 34543 367889998888875 78999999999999999986
No 232
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.43 E-value=7.6e-05 Score=58.72 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++.+++|+|++||||||+++.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998765
No 233
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.43 E-value=8.2e-05 Score=60.01 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
++-+++|+|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999988
No 234
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.43 E-value=7e-05 Score=59.16 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++|+|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999865
No 235
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.43 E-value=7.4e-05 Score=58.41 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCceEEEEEC
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~ 137 (221)
+++|+|++||||||+++.|...+...|.....++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 6899999999999999999998765553222454
No 236
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.41 E-value=7.1e-05 Score=62.47 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++|+||||||||||++.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998866
No 237
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.41 E-value=4e-05 Score=61.28 Aligned_cols=27 Identities=44% Similarity=0.594 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCc
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRG 130 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G 130 (221)
+++|.|++||||||+++.|...+...|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g 28 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAG 28 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 689999999999999999999885444
No 238
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.40 E-value=6.4e-05 Score=62.21 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=29.0
Q ss_pred cccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccc
Q 027590 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (221)
Q Consensus 92 l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~ 141 (221)
++++++...+| +.|+||+|+|||||++++++.+... . +.+++.++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-~--~~i~~~~~ 81 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-F--FTISGSDF 81 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-E--EEECSCSS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-E--EEEeHHHH
Confidence 34444444555 8899999999999999999976311 1 25666554
No 239
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.40 E-value=8.4e-05 Score=58.19 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
++.+++|+|++||||||+++.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997654
No 240
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.40 E-value=7.3e-05 Score=58.85 Aligned_cols=29 Identities=48% Similarity=0.548 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCceE
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRGKL 132 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G~i 132 (221)
+++|+|++||||||+++.|...+...|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~ 30 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKK 30 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 68999999999999999999887555644
No 241
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.40 E-value=5.5e-05 Score=58.95 Aligned_cols=27 Identities=37% Similarity=0.645 Sum_probs=18.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++.+++|+|++||||||+++.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357789999999999999999998765
No 242
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.39 E-value=6.3e-05 Score=64.41 Aligned_cols=27 Identities=33% Similarity=0.206 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++.+++|+|++|+|||||++.|.|.-
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 445589999999999999999999873
No 243
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.34 E-value=0.0001 Score=58.56 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++|+|++||||||+++.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998865
No 244
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.32 E-value=8.8e-05 Score=58.49 Aligned_cols=28 Identities=36% Similarity=0.433 Sum_probs=24.7
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
..++.+++|+|++||||||+++.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567799999999999999999998865
No 245
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.31 E-value=0.00012 Score=57.58 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=20.4
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
.+++++++..++. .++|+|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4678888887777 578999999999999999987
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.30 E-value=0.00011 Score=58.84 Aligned_cols=23 Identities=48% Similarity=0.515 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhccc
Q 027590 105 IWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 105 i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
++|+||||||||||++.|....|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999875543
No 247
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.30 E-value=0.00011 Score=57.47 Aligned_cols=29 Identities=38% Similarity=0.528 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCceE
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRGKL 132 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G~i 132 (221)
+++|+|++||||||+++.|...+...|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~ 30 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYF 30 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 68999999999999999999877544544
No 248
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.28 E-value=0.00013 Score=57.77 Aligned_cols=28 Identities=32% Similarity=0.289 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCc
Q 027590 103 CVIWITGLSGSGKSTLACALSQALHWRG 130 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l~~~G 130 (221)
.+++|+|++|||||||+..|...+...|
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 4799999999999999999999875444
No 249
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.28 E-value=0.00014 Score=56.15 Aligned_cols=25 Identities=44% Similarity=0.497 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
=++++|+|+.||||||+++.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998865
No 250
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.28 E-value=0.00084 Score=59.99 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=31.1
Q ss_pred eEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccc
Q 027590 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (221)
Q Consensus 97 l~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~ 141 (221)
+.-.++.+++|+|++||||||+++.|...+ |.. .++.+.+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~---~~~--~i~~D~~ 292 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA---GYV--HVNRDTL 292 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG---TCE--ECCGGGS
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc---CcE--EEccchH
Confidence 344578899999999999999999988755 444 5666554
No 251
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.27 E-value=0.00021 Score=62.96 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc------------cCceEEEEECCccccccccccceeeccC
Q 027590 104 VIWITGLSGSGKSTLACALSQALH------------WRGKLTYILDGDNCRHGLNRDLSFKAED 155 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~------------~~G~i~~~l~g~~~~~~~~~~ig~v~q~ 155 (221)
+++|+|++|||||||++.|.+... ..|.+ .++|..+. +....|++.+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i--~~~g~~v~--l~DT~G~i~~l 240 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAI--PINNRKIM--LVDTVGFIRGI 240 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEE--EETTEEEE--EEECCCBCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEE--EECCEEEE--EEeCCCchhcC
Confidence 499999999999999999999753 12555 66775442 23345665543
No 252
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.25 E-value=0.00016 Score=58.46 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
++|-+++|+|++||||||+++.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998765
No 253
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.25 E-value=0.00012 Score=57.40 Aligned_cols=24 Identities=46% Similarity=0.589 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+++|+|++||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998865
No 254
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.24 E-value=0.00013 Score=56.35 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+++|+|++||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998865
No 255
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.24 E-value=0.00011 Score=66.52 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=37.3
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCc-eE
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRG-KL 132 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G-~i 132 (221)
...|+++..-+++|+++.|.|++|+|||||+..++.... ..| .+
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~V 235 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENV 235 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCE
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcE
Confidence 356788877799999999999999999999999999874 456 44
No 256
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.24 E-value=0.0001 Score=69.87 Aligned_cols=37 Identities=30% Similarity=0.267 Sum_probs=29.0
Q ss_pred eeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc---cCceE
Q 027590 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKL 132 (221)
Q Consensus 96 sl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~---~~G~i 132 (221)
++.++++..++|+|++|+|||||++.|.+... ..|++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 45678999999999999999999999997652 45654
No 257
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.24 E-value=0.00017 Score=57.30 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++.+++|+|++||||||+++.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998765
No 258
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.23 E-value=5e-05 Score=64.24 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECC
Q 027590 103 CVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDG 138 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g 138 (221)
..+.|+||+|+||||++++|.+.+. ..+.+. .++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~-~~~~ 83 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI-RIDM 83 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE-EEEG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceE-Eeec
Confidence 5899999999999999999999985 445442 4443
No 259
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.23 E-value=6.9e-05 Score=63.99 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCce-EEEEECCcccc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGK-LTYILDGDNCR 142 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~-i~~~l~g~~~~ 142 (221)
++-+++|.|++||||||+++.|...+...|. +. .++.+++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~-vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAV-SIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEE-EEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCee-Eeecchhh
Confidence 4568999999999999999999986642222 22 45555544
No 260
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.22 E-value=0.00018 Score=55.22 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 261
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.20 E-value=0.00024 Score=63.81 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|+||+|||||++.|.|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999874
No 262
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.20 E-value=4.8e-05 Score=66.90 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=33.9
Q ss_pred ceeeeeeeEecCCccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+.+.++...|+...++++++|.| +|+|+||+|||||++.|.+..
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 344556666666777888888876 999999999999999987764
No 263
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.20 E-value=0.00019 Score=58.37 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++.+++|+|++||||||+++.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998654
No 264
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.19 E-value=0.00019 Score=55.12 Aligned_cols=23 Identities=43% Similarity=0.641 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 265
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.19 E-value=0.00018 Score=56.14 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+.+++|+|++||||||+++.|+..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998755
No 266
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.18 E-value=0.0002 Score=56.87 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+..+++|+|++||||||+++.|...+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998654
No 267
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.17 E-value=0.00041 Score=63.87 Aligned_cols=47 Identities=19% Similarity=0.146 Sum_probs=35.6
Q ss_pred ccceeEeeCCcEEEEEcCCCCcHHHHHHHHHh-cc--ccCceEE-EEECCc
Q 027590 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQ-AL--HWRGKLT-YILDGD 139 (221)
Q Consensus 93 ~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g-~l--~~~G~i~-~~l~g~ 139 (221)
+.+++++.++..+.|.|.+||||||+++.|.. ++ .+.+.+. |.+|.+
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 35788889999999999999999999999875 33 2446552 345544
No 268
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.16 E-value=0.00028 Score=56.73 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~ 141 (221)
++..+.|.||+|+|||||++.+...+...|..+++++..++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 57789999999999999999999887533433334554443
No 269
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.16 E-value=0.00017 Score=58.30 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
++.+++|+|++||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 270
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.15 E-value=0.00021 Score=57.29 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996654
No 271
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.12 E-value=0.00019 Score=61.13 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=26.3
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+.++..+.|.||+|+|||||++++++.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45788899999999999999999999876
No 272
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.11 E-value=0.00029 Score=61.92 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=25.6
Q ss_pred ccceeEeeCCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 93 ~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
++..+++.+| +.+|+|+|||||||++.+|.=
T Consensus 17 ~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4556666664 899999999999999999974
No 273
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.10 E-value=0.00023 Score=55.51 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
.++|+|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999985
No 274
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.09 E-value=0.00028 Score=58.39 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+.-+++|+|++||||||+++.|...+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344589999999999999999998865
No 275
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.09 E-value=0.00027 Score=56.76 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997644
No 276
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.08 E-value=0.00031 Score=57.26 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=27.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCce
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~ 131 (221)
-+|.+++|.|++||||||+++.|...+...|.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 35 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGI 35 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 46889999999999999999999988865564
No 277
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.07 E-value=0.0003 Score=58.17 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++-.++|+|++||||||+++.|...+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 367789999999999999999997644
No 278
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.06 E-value=0.00032 Score=54.38 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 279
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.03 E-value=0.00034 Score=56.12 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
...+++|+|.+||||||+++.|...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34589999999999999999998764
No 280
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.02 E-value=0.00029 Score=63.63 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc-cCceE
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALH-WRGKL 132 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i 132 (221)
++.+++++|++||||||++..|+..+. ..+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV 128 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV 128 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 688999999999999999999999985 44555
No 281
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.00 E-value=0.0007 Score=58.95 Aligned_cols=42 Identities=24% Similarity=0.254 Sum_probs=32.3
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhc--ccc-----CceEEEEECCcc
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQA--LHW-----RGKLTYILDGDN 140 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~--l~~-----~G~i~~~l~g~~ 140 (221)
-+++|+++.|.|++|||||||+..++.. ++. .|.+ ++++.+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~v-lyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKI-IFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEE-EEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeE-EEEECCC
Confidence 3689999999999999999999999886 332 3444 3566654
No 282
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.98 E-value=0.00077 Score=58.09 Aligned_cols=42 Identities=26% Similarity=0.247 Sum_probs=32.3
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhcc--cc-----CceEEEEECCcc
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQAL--HW-----RGKLTYILDGDN 140 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l--~~-----~G~i~~~l~g~~ 140 (221)
-+++|+++.|.|++|||||||+..++... +. .+.+. +++.+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vl-yi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAV-YIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEE-EEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEE-EEECCC
Confidence 47899999999999999999999998764 21 34443 566654
No 283
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.97 E-value=0.00038 Score=57.78 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=26.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRG 130 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G 130 (221)
-+|.+++|.|++||||||+++.|...+...|
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3688999999999999999999998885444
No 284
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.97 E-value=0.00038 Score=56.22 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+|-+++|+|++||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 285
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.95 E-value=0.00058 Score=54.12 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCc
Q 027590 103 CVIWITGLSGSGKSTLACALSQALHWRG 130 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l~~~G 130 (221)
..+.|.||+|+|||||+++++..+...|
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~ 82 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN 82 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 6789999999999999999999885433
No 286
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.95 E-value=0.00043 Score=58.58 Aligned_cols=24 Identities=46% Similarity=0.576 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
+..+++|+|++||||||+++.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999984
No 287
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.94 E-value=0.00029 Score=64.35 Aligned_cols=36 Identities=33% Similarity=0.410 Sum_probs=30.1
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
...++++++.+++| +.|+||+|+|||||++++++..
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 34566777777777 7899999999999999999875
No 288
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.94 E-value=0.00043 Score=56.49 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRG 130 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G 130 (221)
+|.+++|.|++||||||+++.|...+...|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 588999999999999999999999886555
No 289
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.93 E-value=0.00036 Score=62.29 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=24.1
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
+..+..++|+|+||+|||||+++|.+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 467788999999999999999999987
No 290
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.90 E-value=0.00048 Score=55.97 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998755
No 291
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.89 E-value=0.00055 Score=60.33 Aligned_cols=36 Identities=25% Similarity=0.155 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEEC
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILD 137 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~ 137 (221)
.+..++|+|+|||||||+++.+...+. ..+.+. .+|
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~-~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVI-IID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEE-EEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEE-EEe
Confidence 566789999999999999999998774 445553 454
No 292
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.88 E-value=0.00048 Score=56.49 Aligned_cols=29 Identities=38% Similarity=0.423 Sum_probs=25.5
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
...+..++.|+||+||||+|.++.|+..+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35778899999999999999999998765
No 293
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.86 E-value=0.00089 Score=57.90 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=28.7
Q ss_pred eCCc--EEEEEcCCCCcHHHHHHHHHhccccC-ceEEEEEC
Q 027590 100 QKGC--VIWITGLSGSGKSTLACALSQALHWR-GKLTYILD 137 (221)
Q Consensus 100 ~~Ge--~i~i~G~sGsGKSTLl~~l~g~l~~~-G~i~~~l~ 137 (221)
..+. .+.|+||+|+|||||++.+.+.+... +...++++
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 3456 89999999999999999999988543 33323455
No 294
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.86 E-value=0.00062 Score=55.60 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++..++|+|++||||||+++.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998765
No 295
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.85 E-value=0.00061 Score=57.44 Aligned_cols=36 Identities=33% Similarity=0.390 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccc
Q 027590 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~ 142 (221)
.++.|+|++||||||+++.|...+ .|.. .++.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~--~~~~--~i~~D~~r 38 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN--PGFY--NINRDDYR 38 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS--TTEE--EECHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC--CCcE--EecccHHH
Confidence 478999999999999999998732 2444 55554443
No 296
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.84 E-value=0.00052 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+.+++|+|++||||||+++.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998864
No 297
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.82 E-value=0.00059 Score=54.84 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 298
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.82 E-value=0.00052 Score=59.08 Aligned_cols=28 Identities=36% Similarity=0.565 Sum_probs=25.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
..+..+.|.||+|+|||||++.+.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999874
No 299
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.82 E-value=0.00062 Score=55.60 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999975
No 300
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.79 E-value=0.00076 Score=58.96 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
.++.+++|+||+|||||||+..|+..+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4567999999999999999999998773
No 301
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.78 E-value=0.00074 Score=55.60 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=27.6
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhcccc-Cc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQALHW-RG 130 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~-~G 130 (221)
-++|.+++|.|++||||||+++.|...+.. .|
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g 50 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYG 50 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccC
Confidence 467999999999999999999999988754 45
No 302
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.77 E-value=0.00084 Score=51.50 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
..+..+.|+||+|+|||||++.+...+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999988763
No 303
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.76 E-value=0.001 Score=57.55 Aligned_cols=35 Identities=31% Similarity=0.244 Sum_probs=29.5
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
...++...+.+ .|.-++|+|+||+||||++..+.+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 34566766666 788999999999999999999987
No 304
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.75 E-value=0.00061 Score=56.19 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHW 128 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~ 128 (221)
.+|.+++|.|++||||||+++.|...+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999999988753
No 305
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.75 E-value=0.00084 Score=56.39 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++..+.|.||+|+||||+++++++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999865
No 306
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.72 E-value=0.00088 Score=54.88 Aligned_cols=27 Identities=26% Similarity=0.210 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
+|.+++|.|..||||||+++.|...+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999988763
No 307
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.72 E-value=0.00027 Score=56.24 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 027590 104 VIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
.+.|.||+|+|||||++.+...+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999988763
No 308
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.71 E-value=0.0008 Score=58.83 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 103 CVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
.+++|+||+|||||||++.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999988764
No 309
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.69 E-value=0.00074 Score=57.68 Aligned_cols=39 Identities=28% Similarity=0.262 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~ 139 (221)
.+..+.|.||+|+|||||++.+...+...|...++++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 345789999999999999999999874333322345443
No 310
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.68 E-value=0.0012 Score=57.96 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=31.6
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~ 139 (221)
+++|+++.|.|++|||||||+..++......|..+.+++.+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 68999999999999999999998887764333223356654
No 311
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.67 E-value=0.00086 Score=56.04 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|++|||||||++.|.|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 312
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.65 E-value=0.0015 Score=53.02 Aligned_cols=27 Identities=44% Similarity=0.363 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-.|..+.|+||+|||||||+..|....
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 467889999999999999999998754
No 313
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.63 E-value=0.0015 Score=59.06 Aligned_cols=41 Identities=27% Similarity=0.435 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~ 141 (221)
++.+++++|++|+||||++..|+..+...|.-+.+++.+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 57899999999999999999999888656654445665443
No 314
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0011 Score=51.64 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-.++|+|++|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998864
No 315
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.62 E-value=0.0012 Score=57.16 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
+.+++|+||+|||||||+..|+..++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45889999999999999999987663
No 316
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.61 E-value=0.00072 Score=56.20 Aligned_cols=27 Identities=33% Similarity=0.246 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++.+|+|.|+.||||||+++.|...+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 578899999999999999999988776
No 317
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.60 E-value=0.0012 Score=49.80 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 318
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.60 E-value=0.0012 Score=54.06 Aligned_cols=33 Identities=36% Similarity=0.457 Sum_probs=27.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCceE
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i 132 (221)
.+|.+++|.|++||||||+++.|...+...+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccceE
Confidence 468999999999999999999999988544443
No 319
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.59 E-value=0.002 Score=55.29 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=33.0
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCc
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG 130 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G 130 (221)
...|+++.--+++|+++.|.|++|+|||||+..++......|
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g 96 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND 96 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 345666654579999999999999999999998886654333
No 320
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.57 E-value=0.0013 Score=54.88 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++.-+.|.||+|+|||||+++++..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 556679999999999999999998876
No 321
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.56 E-value=0.0012 Score=49.28 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 322
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.56 E-value=0.00092 Score=54.61 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.3
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
+.+|+.+.+.|++||||||++..+..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 46799999999999999998876643
No 323
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.56 E-value=0.0012 Score=57.35 Aligned_cols=24 Identities=42% Similarity=0.636 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+++|+||+|||||||++.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999876
No 324
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.56 E-value=0.0013 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999998764
No 325
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.55 E-value=0.0013 Score=49.19 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998763
No 326
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.55 E-value=0.0013 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48899999999999999998764
No 327
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.53 E-value=0.0011 Score=50.95 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
.+..+.|+||+|+|||||++.+...+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355678999999999999999998873
No 328
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.53 E-value=0.0014 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 329
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.53 E-value=0.0014 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 330
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.53 E-value=0.0011 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
No 331
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.50 E-value=0.0015 Score=49.25 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998764
No 332
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.49 E-value=0.0015 Score=49.19 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998654
No 333
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.49 E-value=0.0015 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999987753
No 334
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.49 E-value=0.0015 Score=49.31 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 335
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.48 E-value=0.0019 Score=49.25 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
++.-.++|+|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34557899999999999999999874
No 336
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.48 E-value=0.0015 Score=49.45 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999764
No 337
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.48 E-value=0.0015 Score=49.31 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+--
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998653
No 338
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.46 E-value=0.0016 Score=48.95 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 339
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.46 E-value=0.0016 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 340
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.45 E-value=0.0018 Score=52.97 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
..+.-+.|.||+|+||||+++.++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999998865
No 341
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.45 E-value=0.0016 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
++.|+||+||||+|.++.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998775
No 342
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.44 E-value=0.0016 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999876
No 343
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.00076 Score=57.72 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=26.5
Q ss_pred ccccceeEeeCC--cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 91 KRDRQQLLQQKG--CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 91 ~l~~vsl~i~~G--e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++.+...+..| ..+.|.||+|+||||+++.+++.+
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 334443334444 338899999999999999999986
No 344
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.43 E-value=0.0016 Score=52.30 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-+|+|.|+.||||||+++.|+..+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999877
No 345
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.41 E-value=0.0015 Score=49.83 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 346
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.41 E-value=0.0014 Score=50.93 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 027590 103 CVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999876
No 347
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.41 E-value=0.0029 Score=50.30 Aligned_cols=28 Identities=36% Similarity=0.373 Sum_probs=23.2
Q ss_pred eEeeCCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 97 LLQQKGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 97 l~i~~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
+---.|.-+.|+|+||+|||||+..+..
T Consensus 11 ~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 11 FLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3345688899999999999999988765
No 348
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.40 E-value=0.0016 Score=50.41 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|++|+|||||++.+.+.-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998763
No 349
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.40 E-value=0.0016 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 027590 103 CVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-.++|+|++|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
No 350
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.40 E-value=0.0022 Score=48.44 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHW 128 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~ 128 (221)
..+.-+.|.||+|+|||++++.|....+.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 34556889999999999999999987643
No 351
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.39 E-value=0.0019 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 352
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.38 E-value=0.0029 Score=50.10 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=19.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
+|.++.|+|+.||||||++..+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999844443
No 353
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.38 E-value=0.0017 Score=56.71 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=35.7
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECC
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g 138 (221)
..|+.+.--+++|+++.|.|++|+|||||+..++......|..+.+|..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4455554457999999999999999999999998876434433323433
No 354
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.37 E-value=0.002 Score=49.92 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999886
No 355
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.36 E-value=0.002 Score=49.57 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 356
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.36 E-value=0.0021 Score=55.60 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
+.+++|+||+|||||||+..|+..++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45899999999999999999987763
No 357
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.36 E-value=0.002 Score=49.67 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 358
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.35 E-value=0.002 Score=48.68 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 027590 103 CVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-.++|+|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 359
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.35 E-value=0.002 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|.+|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 360
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.34 E-value=0.0027 Score=51.38 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=23.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
+++|+++.|.|++|+|||||+..++-
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 69999999999999999999876643
No 361
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.34 E-value=0.0022 Score=48.92 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999999865
No 362
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.34 E-value=0.0046 Score=55.90 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=32.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccccccccccceeeccChHHHHHHHH
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIE 164 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~~~~~~~ig~v~q~~~~~~~~v~ 164 (221)
-+.|.||+|+||||++++|++.+... .+ .++...+. ..+|+.++....++.+.
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~~-~~--~v~~~~~~-----~~g~vG~d~e~~lr~lf 104 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANAP-FI--KVEATKFT-----EVGYVGKEVDSIIRDLT 104 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC-EE--EEEGGGGC---------CCCCTHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCC-ce--eecchhhc-----ccceeeccHHHHHHHHH
Confidence 37899999999999999999988421 12 44443332 23566665544444433
No 363
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.33 E-value=0.0018 Score=49.96 Aligned_cols=22 Identities=41% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 027590 105 IWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 105 i~i~G~sGsGKSTLl~~l~g~l 126 (221)
++|+|++|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999998864
No 364
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.33 E-value=0.0024 Score=54.60 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=25.2
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-+++|+++.|.|++|||||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999988764
No 365
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.33 E-value=0.0021 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+.-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 366
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.33 E-value=0.0021 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.079 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999875
No 367
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.32 E-value=0.002 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|.+|+|||||++.|.+.-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999998864
No 368
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.31 E-value=0.0022 Score=48.21 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q 027590 105 IWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 105 i~i~G~sGsGKSTLl~~l~g~ 125 (221)
++|+|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 369
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.30 E-value=0.0021 Score=48.83 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999864
No 370
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.28 E-value=0.0023 Score=49.01 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4889999999999999999865
No 371
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.28 E-value=0.00075 Score=55.86 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=23.1
Q ss_pred eeEeeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 96 sl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+...+| +.|.||+|+|||||+++++..+
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3334455 7799999999999999998864
No 372
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0023 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58899999999999999998653
No 373
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.27 E-value=0.0024 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998754
No 374
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.26 E-value=0.0024 Score=49.50 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++++|.+|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 375
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.25 E-value=0.0025 Score=48.69 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+--
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998753
No 376
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.24 E-value=0.0039 Score=54.94 Aligned_cols=22 Identities=45% Similarity=0.465 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 027590 103 CVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g 124 (221)
-.++|+|.+|+|||||++.|.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999998
No 377
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.23 E-value=0.00087 Score=64.86 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=33.7
Q ss_pred ceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCccc
Q 027590 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (221)
Q Consensus 95 vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~ 141 (221)
.++.+.++..+.|.||||+|||||+++|++.+. .+.+ .+++.++
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-~~~i--~v~~~~l 547 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFI--SIKGPEL 547 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-CCCC--CCCCSSS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC-CCEE--EEechHh
Confidence 356678899999999999999999999999873 1223 4555444
No 378
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.22 E-value=0.0026 Score=49.64 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999766554
No 379
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.22 E-value=0.0026 Score=54.40 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 027590 103 CVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-+++|+|.+|+|||||++.|.|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999986
No 380
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.22 E-value=0.0034 Score=51.59 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=27.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEE
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l 136 (221)
.+|.++.++|+.|+||||++..+...+...|.-++++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5789999999999999998877766665455433334
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.22 E-value=0.0027 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
--.++|+|++|+|||||++.|.+.+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999998764
No 382
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.22 E-value=0.0014 Score=50.33 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHh
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g 124 (221)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344789999999999999999974
No 383
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.21 E-value=0.0025 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998653
No 384
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.21 E-value=0.0025 Score=50.63 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|++|+|||||++.+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998865
No 385
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.21 E-value=0.0026 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.367 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
+++|+|.+|+|||||++.|.+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999986
No 386
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.18 E-value=0.0032 Score=54.90 Aligned_cols=31 Identities=42% Similarity=0.435 Sum_probs=25.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRG 130 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G 130 (221)
.+.-+++|+|++|+|||||+..|...+...|
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g 107 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERG 107 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 3455899999999999999999988774444
No 387
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.17 E-value=0.0025 Score=56.22 Aligned_cols=22 Identities=50% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 027590 105 IWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 105 i~i~G~sGsGKSTLl~~l~g~l 126 (221)
++|+|++|+|||||+++|.+.-
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999863
No 388
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.17 E-value=0.003 Score=51.05 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
|.+|+|=|+.||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999998874
No 389
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.17 E-value=0.0027 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 390
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.17 E-value=0.0028 Score=49.57 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999765
No 391
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.16 E-value=0.0029 Score=53.19 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
.++.-+.|.||+|+||||+++.++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999988873
No 392
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.16 E-value=0.0029 Score=49.61 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998754
No 393
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.16 E-value=0.0029 Score=48.46 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999754
No 394
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.15 E-value=0.0029 Score=49.12 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+--
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 395
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.15 E-value=0.0029 Score=53.64 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+.+..+.|.||+|+|||+|+++|+..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455678888999999999999999876
No 396
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.15 E-value=0.0029 Score=49.05 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 397
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.15 E-value=0.0029 Score=49.22 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 398
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.13 E-value=0.0029 Score=56.58 Aligned_cols=25 Identities=44% Similarity=0.606 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 103 CVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
.+++|+||+|||||||+..|+..++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999987764
No 399
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.003 Score=49.33 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 400
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.13 E-value=0.0017 Score=58.54 Aligned_cols=39 Identities=36% Similarity=0.545 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~ 139 (221)
++.+++|+|++|+||||++..|++.+...|.-+.+++.+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 346999999999999999999999885445433355544
No 401
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.12 E-value=0.0024 Score=53.42 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
.++|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999998765
No 402
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.12 E-value=0.0031 Score=48.43 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 403
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.10 E-value=0.003 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-.++|+|++|+|||||++.|.+.-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
No 404
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.09 E-value=0.0033 Score=48.78 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 405
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.08 E-value=0.003 Score=48.70 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
+.-.++|+|++|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999999864
No 406
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.08 E-value=0.0022 Score=50.57 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
.++|+|.+|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999754
No 407
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.07 E-value=0.0033 Score=48.18 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 027590 104 VIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g 124 (221)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 588999999999999999984
No 408
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.06 E-value=0.0034 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+--
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 409
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.06 E-value=0.0034 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|.+|||||||++.|.|.-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999873
No 410
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.06 E-value=0.0033 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.291 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
--++|+|.+|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 368999999999999999998764
No 411
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.06 E-value=0.0029 Score=54.36 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
..+..+.|.||+|+|||||++.+...+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566899999999999999999998873
No 412
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.0034 Score=48.90 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 413
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.05 E-value=0.0045 Score=51.10 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccC
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQALHWR 129 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~ 129 (221)
.+.-+.|.|++|+|||++++.+....+..
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~ 56 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRW 56 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCcc
Confidence 34568899999999999999999887533
No 414
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.04 E-value=0.0036 Score=48.77 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+--
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998653
No 415
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.03 E-value=0.0054 Score=52.69 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++.-+.|.||+|+|||+|+++++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999876
No 416
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.02 E-value=0.0046 Score=55.54 Aligned_cols=49 Identities=18% Similarity=0.089 Sum_probs=35.6
Q ss_pred cccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECC
Q 027590 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDG 138 (221)
Q Consensus 90 ~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g 138 (221)
..|+.+.--+++|+++.|.|++|+|||||+..++.... ..|..+.++..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 34555554479999999999999999999999988764 34532223433
No 417
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.02 E-value=0.0033 Score=54.72 Aligned_cols=26 Identities=38% Similarity=0.333 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
..-.++|+|++|+|||||++.|.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999864
No 418
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.01 E-value=0.0047 Score=54.42 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=30.9
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceEEEEECCc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGD 139 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i~~~l~g~ 139 (221)
+++|.++.|.|++|+|||||+..++.... ..+.+. +++.+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vl-yi~~E 111 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCA-FIDAE 111 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEE-EEECC
Confidence 68999999999999999999988877653 334443 45544
No 419
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.01 E-value=0.0034 Score=49.20 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+.|.||+|+|||||++.+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999998875
No 420
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0038 Score=48.29 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 421
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.0038 Score=48.79 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 422
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.00 E-value=0.0037 Score=49.11 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 027590 104 VIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g 124 (221)
-++|+|.+|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 423
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.00 E-value=0.0036 Score=57.60 Aligned_cols=43 Identities=28% Similarity=0.477 Sum_probs=30.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCcccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~~~~ 142 (221)
....+++++|.+||||||+++.|+..+...|.-+..++.++++
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 4456899999999999999999998774223211145555544
No 424
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.0037 Score=48.42 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
.-.++|+|++|+|||||++.+.+-
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999853
No 425
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0037 Score=49.71 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999887653
No 426
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.99 E-value=0.0032 Score=49.22 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998653
No 427
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.98 E-value=0.0037 Score=49.18 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998753
No 428
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.97 E-value=0.004 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 429
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.97 E-value=0.0034 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-.++|+|.+|+|||||++.+.+-.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 430
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.97 E-value=0.0037 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999765
No 431
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.96 E-value=0.004 Score=48.50 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|.+|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998763
No 432
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.95 E-value=0.0051 Score=46.97 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
--++|+|++|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998653
No 433
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.95 E-value=0.0041 Score=48.98 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 027590 103 CVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
--++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999865
No 434
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.95 E-value=0.0041 Score=48.80 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.--++|+|++|+|||||++.+.+-.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998653
No 435
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.94 E-value=0.0033 Score=56.50 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+..+.|.||+|+|||||++++++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999987
No 436
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.93 E-value=0.0019 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 027590 103 CVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-.++|+|.+|+|||||++.|.+.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 36899999999999999999886
No 437
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.93 E-value=0.0042 Score=51.55 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+...+.|.||+|+|||||++.++..+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 445578899999999999999998864
No 438
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.93 E-value=0.0035 Score=48.38 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|.+|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 439
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.92 E-value=0.0037 Score=54.28 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
++.-+.|.||+|+||||++++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45568899999999999999999876
No 440
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.92 E-value=0.0042 Score=49.13 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 441
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.91 E-value=0.0039 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-.++|+|++|+|||||++.+.+--
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998763
No 442
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.91 E-value=0.0029 Score=49.14 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-.++|+|.+|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998764
No 443
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.90 E-value=0.0043 Score=51.70 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|.+|+|||||++.+.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 444
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.90 E-value=0.0041 Score=52.19 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|.+|||||||++.+.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999863
No 445
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.88 E-value=0.0049 Score=56.08 Aligned_cols=43 Identities=26% Similarity=0.243 Sum_probs=33.1
Q ss_pred ccccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc-cCceE
Q 027590 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKL 132 (221)
Q Consensus 89 ~~~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~i 132 (221)
..++|.+ +.+-+|+.++|+|+||+|||||++.|..... ..+.+
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 3455555 5667899999999999999999999988763 33444
No 446
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.88 E-value=0.0045 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 447
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.88 E-value=0.0039 Score=52.10 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+.-+.|.||+|+||||+++.++..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999876
No 448
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.88 E-value=0.0044 Score=49.36 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998763
No 449
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.88 E-value=0.0033 Score=48.02 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|.+|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999875
No 450
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.88 E-value=0.0047 Score=48.09 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|.+|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888764
No 451
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.87 E-value=0.0059 Score=52.24 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc-cCce
Q 027590 102 GCVIWITGLSGSGKSTLACALSQALH-WRGK 131 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l~-~~G~ 131 (221)
+.-+.|.||+|+|||+|+++|+..+. ..|.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~ 182 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGV 182 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCC
Confidence 67899999999999999999998876 6554
No 452
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.86 E-value=0.0039 Score=51.10 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.-+++|.|+.||||||+++.|+..+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 3489999999999999999998866
No 453
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.85 E-value=0.0047 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|..|+|||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999873
No 454
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.85 E-value=0.0049 Score=49.26 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 103 CVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
-.++|+|.+|+|||||+..+.....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999987653
No 455
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.85 E-value=0.0047 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998653
No 456
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.84 E-value=0.0047 Score=48.28 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 027590 103 CVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
--++|+|++|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999764
No 457
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.83 E-value=0.0048 Score=53.16 Aligned_cols=28 Identities=36% Similarity=0.608 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
.+|..+.|.||+|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3466899999999999999999998874
No 458
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.82 E-value=0.0073 Score=49.45 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=29.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECCc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g~ 139 (221)
.+.-++.++|..|+||||++..|+..+. .|.-+..++.+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 4556889999999999999999997776 66433345543
No 459
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.81 E-value=0.0048 Score=48.35 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|.+|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58899999999999999998854
No 460
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.80 E-value=0.0048 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
No 461
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.79 E-value=0.005 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|.+|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999874
No 462
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.78 E-value=0.0052 Score=55.56 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
.+...++++|.+||||||+++.|+..+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999998763
No 463
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.77 E-value=0.0053 Score=47.71 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999865
No 464
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.76 E-value=0.0049 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-.++|+|++||||||+++.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997755
No 465
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.75 E-value=0.0031 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=9.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998765
No 466
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.71 E-value=0.0047 Score=48.36 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
.--++|+|++|+|||||++.+.+-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999653
No 467
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.70 E-value=0.0018 Score=58.55 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=23.5
Q ss_pred eeCCc--EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 99 QQKGC--VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 99 i~~Ge--~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+..|. .+.|.||+|+|||||++.|...+
T Consensus 45 i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 45 IEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 44454 48899999999999999999876
No 468
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.70 E-value=0.0065 Score=51.96 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++.-+.|.||+|+|||+|+++++..+
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345568999999999999999998865
No 469
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.67 E-value=0.0052 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|.+|+|||||++.|.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 470
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.65 E-value=0.0065 Score=52.85 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++.-+.|.||+|+|||||+++++..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999998865
No 471
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.63 E-value=0.0072 Score=52.54 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=24.7
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 98 LQQKGCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 98 ~i~~Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-+.+|.++.|.||+|+|||||+..++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4678888999999999999999998764
No 472
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.62 E-value=0.0078 Score=54.14 Aligned_cols=41 Identities=29% Similarity=0.430 Sum_probs=32.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccC-ceEEEEECCcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDN 140 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~-G~i~~~l~g~~ 140 (221)
.++.+++++|++|+||||++-.|+..+... |.-+.+++.+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 456799999999999999999999888654 76555666654
No 473
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.62 E-value=0.0063 Score=50.49 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|.+|+|||||++.+.+--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 474
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.61 E-value=0.0063 Score=48.70 Aligned_cols=29 Identities=48% Similarity=0.548 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCceE
Q 027590 104 VIWITGLSGSGKSTLACALSQALHWRGKL 132 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l~~~G~i 132 (221)
+|+|=|.-||||||.++.|...+...|.-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~ 30 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKK 30 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc
Confidence 57888999999999999999988666643
No 475
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.60 E-value=0.0067 Score=47.83 Aligned_cols=23 Identities=13% Similarity=0.227 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999997653
No 476
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.59 E-value=0.0033 Score=47.34 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+.-+.|.|++|+|||++++.+....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34558899999999999999887654
No 477
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.57 E-value=0.0068 Score=47.92 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 027590 103 CVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
--++|+|.+|+|||||++.+.+-
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36889999999999999888754
No 478
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.57 E-value=0.0071 Score=52.19 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 101 ~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.+..+.|.||+|+|||||++.+...+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 479
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.57 E-value=0.0065 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++++|.+|+|||||++.|.+.-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998763
No 480
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.57 E-value=0.0067 Score=52.72 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=28.8
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhcc-cc--CceEEEEECCcc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQAL-HW--RGKLTYILDGDN 140 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l-~~--~G~i~~~l~g~~ 140 (221)
+.+| ++.|.||+|||||||+-.++--. .. .|.++ +++++.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vl-yId~E~ 68 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCL-FYDSEF 68 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEE-EEESSC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEE-EEeccc
Confidence 5789 89999999999999966665544 32 45544 577654
No 481
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.55 E-value=0.0065 Score=51.85 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 103 CVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 103 e~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
..+.|.||+|+|||||++.++..+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
No 482
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.53 E-value=0.011 Score=53.15 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=34.2
Q ss_pred ccccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECC
Q 027590 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (221)
Q Consensus 91 ~l~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g 138 (221)
.|+.+---+++|+++.|.|++|+|||||+-.++.-....|..+.++..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 344443347999999999999999999998887766433543334543
No 483
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.52 E-value=0.0066 Score=52.91 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+..+.|+||+|+||||+++.++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4468899999999999999999876
No 484
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.0077 Score=48.20 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
-++|+|++|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 485
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.0078 Score=48.56 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 027590 104 VIWITGLSGSGKSTLACALSQ 124 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g 124 (221)
-++|+|.+|+|||||++.+.+
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999985
No 486
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.48 E-value=0.0079 Score=48.03 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|.+|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999998765
No 487
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.46 E-value=0.0016 Score=55.60 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=26.8
Q ss_pred ccceeEeeCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 027590 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (221)
Q Consensus 93 ~~vsl~i~~Ge~i~i~G~sGsGKSTLl~~l~g~l~ 127 (221)
+.+...+..|.-+.|.||+|+|||+|++.++..+.
T Consensus 37 ~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 37 NRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 33333344466789999999999999999998663
No 488
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.45 E-value=0.0063 Score=54.76 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 027590 104 VIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++|+|.+|+|||||++.|.|.-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 69999999999999999998863
No 489
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.41 E-value=0.0033 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|.+|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988853
No 490
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.40 E-value=0.0084 Score=47.30 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|.+|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 491
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.40 E-value=0.009 Score=48.62 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
.++|+|.-||||||+++.+..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~~ 32 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAAR 32 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999863
No 492
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.38 E-value=0.005 Score=47.68 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 027590 102 GCVIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 102 Ge~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
.--++|+|++|+|||||++.+.+-
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 336899999999999999999643
No 493
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.0097 Score=53.51 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=23.5
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+.+..=+.+.||+|||||+|++++++.+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3445558899999999999999999865
No 494
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.38 E-value=0.012 Score=47.11 Aligned_cols=32 Identities=25% Similarity=0.115 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCce
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~ 131 (221)
.+|.+..++|+.||||||.+-.+.......|.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~ 37 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQ 37 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 56899999999999999887666655544444
No 495
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.0098 Score=53.57 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=24.1
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+++..=+.+.||+|||||+|++++++.+
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 4556668899999999999999999875
No 496
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.36 E-value=0.0079 Score=47.82 Aligned_cols=22 Identities=45% Similarity=0.419 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
++.|+|++||||||++..++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3679999999999999988754
No 497
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.01 Score=53.59 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.1
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 99 i~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
+.+..=+.+.||+|||||+|++++++.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4556668899999999999999999875
No 498
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.36 E-value=0.0032 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=4.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027590 104 VIWITGLSGSGKSTLACALSQA 125 (221)
Q Consensus 104 ~i~i~G~sGsGKSTLl~~l~g~ 125 (221)
-++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999988776
No 499
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.35 E-value=0.0086 Score=54.96 Aligned_cols=39 Identities=33% Similarity=0.416 Sum_probs=27.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhccccCceEEEEECC
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l~~~G~i~~~l~g 138 (221)
.++.+++|+|++|+||||++..|+..+...|.-+.+++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 456789999999999999999999777544543323443
No 500
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.34 E-value=0.0077 Score=52.43 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 027590 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (221)
Q Consensus 100 ~~Ge~i~i~G~sGsGKSTLl~~l~g~l 126 (221)
.++.-+.|.||+|+|||+|+++++..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 344558899999999999999999876
Done!