Query 027591
Match_columns 221
No_of_seqs 190 out of 1839
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 12:13:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 1.9E-26 4E-31 161.3 17.4 144 50-204 13-156 (160)
2 KOG0027 Calmodulin and related 99.9 4.2E-25 9.1E-30 157.5 17.3 146 53-204 4-149 (151)
3 PTZ00183 centrin; Provisional 99.9 2E-21 4.3E-26 139.8 17.8 142 53-204 13-154 (158)
4 PTZ00184 calmodulin; Provision 99.9 2.3E-21 4.9E-26 138.1 17.3 141 53-203 7-147 (149)
5 KOG0028 Ca2+-binding protein ( 99.9 2.6E-21 5.7E-26 132.5 15.7 142 53-204 29-170 (172)
6 KOG0031 Myosin regulatory ligh 99.9 4.7E-20 1E-24 125.5 16.2 137 54-204 29-165 (171)
7 KOG0030 Myosin essential light 99.9 4.4E-20 9.6E-25 123.5 14.2 144 51-203 5-150 (152)
8 KOG0037 Ca2+-binding protein, 99.8 9.8E-19 2.1E-23 126.3 15.6 133 56-205 56-189 (221)
9 KOG0034 Ca2+/calmodulin-depend 99.8 6.3E-18 1.4E-22 122.6 14.2 139 53-205 29-176 (187)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 2.4E-17 5.2E-22 119.6 16.2 137 57-204 26-175 (193)
11 KOG0036 Predicted mitochondria 99.7 2.1E-16 4.5E-21 123.9 15.2 139 52-206 9-148 (463)
12 KOG0037 Ca2+-binding protein, 99.7 9.1E-16 2E-20 111.0 13.2 139 3-165 72-217 (221)
13 KOG4223 Reticulocalbin, calume 99.7 2.9E-16 6.2E-21 119.9 8.2 156 56-217 162-318 (325)
14 KOG0044 Ca2+ sensor (EF-Hand s 99.6 6.7E-15 1.5E-19 106.9 12.4 146 23-168 29-175 (193)
15 COG5126 FRQ1 Ca2+-binding prot 99.6 3.8E-14 8.3E-19 99.6 10.3 118 3-121 35-156 (160)
16 PLN02964 phosphatidylserine de 99.5 7.8E-13 1.7E-17 112.2 14.3 135 35-184 119-273 (644)
17 cd05022 S-100A13 S-100A13: S-1 99.5 2.3E-13 5.1E-18 87.2 8.2 69 138-206 6-77 (89)
18 KOG4223 Reticulocalbin, calume 99.5 7.1E-13 1.5E-17 101.5 12.1 155 53-207 73-231 (325)
19 KOG0377 Protein serine/threoni 99.5 1.6E-12 3.5E-17 103.1 13.3 148 55-204 462-615 (631)
20 KOG0027 Calmodulin and related 99.5 2.9E-13 6.4E-18 96.4 8.3 105 17-121 41-149 (151)
21 PTZ00183 centrin; Provisional 99.4 1.6E-11 3.5E-16 88.0 15.0 124 33-168 30-154 (158)
22 PF13499 EF-hand_7: EF-hand do 99.4 1.1E-12 2.4E-17 80.0 7.0 62 141-202 1-66 (66)
23 cd05027 S-100B S-100B: S-100B 99.4 4.9E-12 1.1E-16 81.2 9.0 69 138-206 6-81 (88)
24 PTZ00184 calmodulin; Provision 99.4 6.7E-11 1.5E-15 83.9 15.1 129 27-167 18-147 (149)
25 cd05022 S-100A13 S-100A13: S-1 99.3 7.6E-12 1.7E-16 80.2 7.8 71 53-123 4-77 (89)
26 cd05029 S-100A6 S-100A6: S-100 99.3 1.5E-11 3.2E-16 79.0 7.9 70 138-207 8-82 (88)
27 KOG0034 Ca2+/calmodulin-depend 99.3 3.3E-11 7.1E-16 87.7 10.1 120 3-122 49-176 (187)
28 PF13499 EF-hand_7: EF-hand do 99.3 2.1E-11 4.5E-16 74.4 7.5 62 58-119 1-66 (66)
29 cd05026 S-100Z S-100Z: S-100Z 99.3 2.9E-11 6.3E-16 78.7 8.4 73 136-208 6-85 (93)
30 KOG0028 Ca2+-binding protein ( 99.3 4.7E-11 1E-15 82.5 9.7 105 17-121 66-170 (172)
31 cd05025 S-100A1 S-100A1: S-100 99.3 2.6E-11 5.7E-16 78.9 8.0 70 138-207 7-83 (92)
32 cd05031 S-100A10_like S-100A10 99.3 4.4E-11 9.5E-16 78.2 8.7 68 138-205 6-80 (94)
33 KOG0038 Ca2+-binding kinase in 99.3 5.1E-11 1.1E-15 80.9 8.5 100 96-205 74-178 (189)
34 cd05027 S-100B S-100B: S-100B 99.3 6.5E-11 1.4E-15 76.0 8.7 69 54-122 5-80 (88)
35 KOG2643 Ca2+ binding protein, 99.2 2.4E-10 5.2E-15 90.9 12.4 154 31-205 297-454 (489)
36 KOG0031 Myosin regulatory ligh 99.2 1.2E-10 2.7E-15 79.9 8.6 118 3-120 47-164 (171)
37 cd05023 S-100A11 S-100A11: S-1 99.2 5.1E-10 1.1E-14 72.0 9.1 69 138-206 7-82 (89)
38 PF13833 EF-hand_8: EF-hand do 99.2 1.7E-10 3.6E-15 67.3 6.4 52 153-204 1-53 (54)
39 cd00213 S-100 S-100: S-100 dom 99.1 3.6E-10 7.9E-15 72.9 8.3 69 138-206 6-81 (88)
40 cd05025 S-100A1 S-100A1: S-100 99.1 5.5E-10 1.2E-14 72.7 8.6 69 54-122 6-81 (92)
41 smart00027 EH Eps15 homology d 99.1 7.7E-10 1.7E-14 72.6 8.9 65 139-205 9-73 (96)
42 smart00027 EH Eps15 homology d 99.1 9.8E-10 2.1E-14 72.1 9.4 72 52-125 5-76 (96)
43 cd00052 EH Eps15 homology doma 99.1 5.5E-10 1.2E-14 68.1 7.7 61 143-205 2-62 (67)
44 cd05026 S-100Z S-100Z: S-100Z 99.1 6.4E-10 1.4E-14 72.3 8.3 70 54-123 7-83 (93)
45 cd05029 S-100A6 S-100A6: S-100 99.1 7.3E-10 1.6E-14 71.1 8.3 70 53-122 6-80 (88)
46 cd05031 S-100A10_like S-100A10 99.1 7.4E-10 1.6E-14 72.3 8.4 68 55-122 6-80 (94)
47 cd00052 EH Eps15 homology doma 99.1 1.3E-09 2.8E-14 66.5 7.5 61 60-122 2-62 (67)
48 cd00213 S-100 S-100: S-100 dom 99.0 2.3E-09 5.1E-14 69.1 8.1 70 53-122 4-80 (88)
49 cd00051 EFh EF-hand, calcium b 99.0 2.5E-09 5.4E-14 63.8 7.6 61 142-202 2-62 (63)
50 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.9E-09 6.2E-14 71.7 8.3 64 138-205 46-109 (116)
51 PF13833 EF-hand_8: EF-hand do 99.0 2.7E-09 5.9E-14 62.1 6.6 52 70-121 1-53 (54)
52 cd05030 calgranulins Calgranul 99.0 3.3E-09 7.2E-14 68.2 7.6 72 138-209 6-84 (88)
53 cd05023 S-100A11 S-100A11: S-1 99.0 5.5E-09 1.2E-13 67.2 8.5 70 53-122 5-81 (89)
54 PF14658 EF-hand_9: EF-hand do 99.0 3.1E-09 6.8E-14 63.1 6.6 63 144-206 2-66 (66)
55 KOG2643 Ca2+ binding protein, 98.9 4.1E-09 8.8E-14 84.1 7.9 158 36-209 212-389 (489)
56 PLN02964 phosphatidylserine de 98.9 1.7E-08 3.7E-13 86.3 11.5 123 72-205 119-244 (644)
57 KOG2562 Protein phosphatase 2 98.9 1.4E-08 3E-13 81.7 10.2 128 59-200 280-420 (493)
58 cd00051 EFh EF-hand, calcium b 98.9 1.2E-08 2.6E-13 60.7 7.8 61 59-119 2-62 (63)
59 KOG0036 Predicted mitochondria 98.9 3E-08 6.6E-13 78.7 11.4 106 10-122 42-147 (463)
60 PF14658 EF-hand_9: EF-hand do 98.9 1.3E-08 2.7E-13 60.5 6.6 61 61-121 2-64 (66)
61 KOG0040 Ca2+-binding actin-bun 98.8 4.8E-08 1E-12 87.9 11.9 133 53-202 2249-2396(2399)
62 cd00252 SPARC_EC SPARC_EC; ext 98.8 4E-08 8.7E-13 66.2 8.0 64 53-120 44-107 (116)
63 cd05030 calgranulins Calgranul 98.8 4.5E-08 9.8E-13 63.0 7.5 70 53-122 4-80 (88)
64 KOG0041 Predicted Ca2+-binding 98.7 1.4E-07 3E-12 67.9 8.5 68 140-207 99-166 (244)
65 KOG4251 Calcium binding protei 98.7 2.4E-07 5.2E-12 68.9 9.8 147 56-202 100-307 (362)
66 cd05024 S-100A10 S-100A10: A s 98.7 4.3E-07 9.2E-12 57.9 9.2 68 138-206 6-78 (91)
67 KOG4666 Predicted phosphate ac 98.7 8E-08 1.7E-12 74.0 6.8 156 34-205 203-360 (412)
68 KOG0751 Mitochondrial aspartat 98.6 6.7E-07 1.5E-11 72.7 10.6 145 36-201 90-241 (694)
69 PF00036 EF-hand_1: EF hand; 98.6 1.2E-07 2.6E-12 47.3 3.7 27 142-168 2-28 (29)
70 KOG0041 Predicted Ca2+-binding 98.6 1.7E-06 3.6E-11 62.4 10.9 107 54-168 96-203 (244)
71 KOG0030 Myosin essential light 98.6 6.3E-07 1.4E-11 60.8 8.1 85 35-120 64-150 (152)
72 KOG0038 Ca2+-binding kinase in 98.5 4.2E-07 9.2E-12 62.1 6.8 105 17-121 68-177 (189)
73 cd05024 S-100A10 S-100A10: A s 98.5 2.2E-06 4.7E-11 54.7 8.8 69 54-123 5-78 (91)
74 PF00036 EF-hand_1: EF hand; 98.4 4.7E-07 1E-11 45.1 3.7 27 59-85 2-28 (29)
75 PF13405 EF-hand_6: EF-hand do 98.4 4.7E-07 1E-11 46.1 3.7 30 141-170 1-31 (31)
76 KOG0169 Phosphoinositide-speci 98.3 1.3E-05 2.8E-10 68.8 12.8 137 54-205 133-275 (746)
77 KOG0751 Mitochondrial aspartat 98.3 2.9E-05 6.3E-10 63.5 13.2 101 56-169 32-137 (694)
78 PF12763 EF-hand_4: Cytoskelet 98.3 6.2E-06 1.4E-10 54.4 7.7 67 53-122 6-72 (104)
79 KOG2562 Protein phosphatase 2 98.3 3E-05 6.5E-10 62.9 13.0 176 27-207 146-346 (493)
80 PF14788 EF-hand_10: EF hand; 98.2 5.5E-06 1.2E-10 46.4 5.7 50 73-122 1-50 (51)
81 PF13405 EF-hand_6: EF-hand do 98.2 2E-06 4.4E-11 43.7 3.7 30 58-87 1-31 (31)
82 PRK12309 transaldolase/EF-hand 98.2 5.7E-06 1.2E-10 67.4 6.9 56 138-206 332-387 (391)
83 PF14788 EF-hand_10: EF hand; 98.1 1.9E-05 4E-10 44.3 5.7 50 156-205 1-50 (51)
84 PF13202 EF-hand_5: EF hand; P 98.1 6.4E-06 1.4E-10 39.5 3.2 24 143-166 2-25 (25)
85 PRK12309 transaldolase/EF-hand 98.0 4.5E-05 9.8E-10 62.2 9.3 88 23-123 299-387 (391)
86 PF12763 EF-hand_4: Cytoskelet 98.0 3.6E-05 7.7E-10 50.8 7.1 62 140-204 10-71 (104)
87 KOG0377 Protein serine/threoni 98.0 2.9E-05 6.3E-10 62.7 7.7 67 56-122 546-616 (631)
88 PF13202 EF-hand_5: EF hand; P 97.9 1.7E-05 3.8E-10 38.0 3.1 24 59-82 1-24 (25)
89 KOG1029 Endocytic adaptor prot 97.9 0.00021 4.6E-09 61.6 10.7 63 139-203 194-256 (1118)
90 KOG1707 Predicted Ras related/ 97.7 0.00046 9.9E-09 58.1 10.6 146 55-203 193-376 (625)
91 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.4E-05 3.1E-10 53.7 1.2 61 139-201 53-113 (113)
92 KOG0040 Ca2+-binding actin-bun 97.6 0.00019 4.1E-09 65.9 7.4 68 138-205 2251-2325(2399)
93 PF09279 EF-hand_like: Phospho 97.5 0.00022 4.7E-09 45.2 4.7 65 142-207 2-72 (83)
94 PF10591 SPARC_Ca_bdg: Secrete 97.4 7.8E-05 1.7E-09 50.1 2.0 62 54-117 51-112 (113)
95 KOG0046 Ca2+-binding actin-bun 97.4 0.00087 1.9E-08 55.5 7.9 71 53-124 15-88 (627)
96 KOG4251 Calcium binding protei 97.2 0.00043 9.3E-09 51.9 3.8 70 138-207 99-171 (362)
97 KOG0046 Ca2+-binding actin-bun 97.2 0.0024 5.2E-08 53.0 8.0 66 140-206 19-87 (627)
98 KOG4065 Uncharacterized conser 97.2 0.00063 1.4E-08 44.8 3.8 57 145-201 72-142 (144)
99 KOG4666 Predicted phosphate ac 97.2 0.00094 2E-08 52.1 5.4 119 2-121 241-359 (412)
100 PF05042 Caleosin: Caleosin re 97.0 0.011 2.3E-07 42.4 9.3 104 58-166 8-164 (174)
101 smart00054 EFh EF-hand, calciu 97.0 0.0011 2.4E-08 31.9 3.1 27 142-168 2-28 (29)
102 smart00054 EFh EF-hand, calciu 96.9 0.0015 3.2E-08 31.4 3.1 27 59-85 2-28 (29)
103 PF09279 EF-hand_like: Phospho 96.5 0.0079 1.7E-07 38.0 5.2 65 58-123 1-71 (83)
104 KOG1265 Phospholipase C [Lipid 96.5 0.16 3.5E-06 45.3 14.2 120 68-204 159-299 (1189)
105 KOG4065 Uncharacterized conser 96.3 0.017 3.6E-07 38.3 5.4 60 59-118 69-142 (144)
106 KOG0035 Ca2+-binding actin-bun 96.2 0.12 2.7E-06 46.3 12.1 99 55-164 745-848 (890)
107 PF08726 EFhand_Ca_insen: Ca2+ 95.8 0.011 2.3E-07 35.8 2.8 53 140-200 6-65 (69)
108 KOG1029 Endocytic adaptor prot 95.7 0.025 5.5E-07 49.4 5.7 73 49-123 187-259 (1118)
109 KOG1955 Ral-GTPase effector RA 95.6 0.018 3.9E-07 47.7 4.2 83 50-134 224-306 (737)
110 KOG3555 Ca2+-binding proteogly 95.5 0.017 3.7E-07 45.6 3.6 64 138-205 248-311 (434)
111 PLN02952 phosphoinositide phos 95.4 0.19 4E-06 43.7 9.8 89 106-204 13-110 (599)
112 PF05517 p25-alpha: p25-alpha 95.2 0.15 3.3E-06 36.3 7.6 62 145-206 7-71 (154)
113 KOG3555 Ca2+-binding proteogly 95.0 0.078 1.7E-06 42.1 5.9 99 57-170 211-312 (434)
114 KOG1955 Ral-GTPase effector RA 95.0 0.086 1.9E-06 43.9 6.3 65 138-204 229-293 (737)
115 KOG0042 Glycerol-3-phosphate d 94.6 0.096 2.1E-06 44.4 5.8 68 140-207 593-660 (680)
116 PF05042 Caleosin: Caleosin re 94.6 0.17 3.6E-06 36.4 6.2 67 141-207 8-127 (174)
117 PF09069 EF-hand_3: EF-hand; 94.5 0.47 1E-05 30.4 7.5 62 140-204 3-75 (90)
118 KOG4347 GTPase-activating prot 94.3 0.1 2.2E-06 44.9 5.3 77 74-162 535-612 (671)
119 KOG0998 Synaptic vesicle prote 94.3 0.069 1.5E-06 48.4 4.6 147 53-204 125-345 (847)
120 KOG2243 Ca2+ release channel ( 93.8 0.12 2.6E-06 48.4 5.1 59 144-203 4061-4119(5019)
121 KOG4347 GTPase-activating prot 93.8 0.14 3E-06 44.1 5.2 76 39-115 537-612 (671)
122 KOG0042 Glycerol-3-phosphate d 93.7 0.21 4.5E-06 42.6 6.0 73 52-124 588-660 (680)
123 KOG0169 Phosphoinositide-speci 93.6 1 2.2E-05 39.8 10.1 101 90-205 133-233 (746)
124 PF05517 p25-alpha: p25-alpha 92.8 0.91 2E-05 32.3 7.5 63 60-122 2-70 (154)
125 PF09068 EF-hand_2: EF hand; 91.7 3 6.6E-05 28.6 8.7 61 108-168 58-125 (127)
126 KOG3866 DNA-binding protein of 90.6 0.41 8.9E-06 37.6 3.9 61 144-204 248-324 (442)
127 KOG4578 Uncharacterized conser 90.6 0.22 4.7E-06 39.4 2.5 65 141-205 334-399 (421)
128 PF08414 NADPH_Ox: Respiratory 90.2 1.4 3E-05 28.6 5.4 64 139-207 29-95 (100)
129 KOG0035 Ca2+-binding actin-bun 89.8 1.3 2.9E-05 40.0 6.9 69 137-205 744-817 (890)
130 PLN02952 phosphoinositide phos 89.5 4.6 9.9E-05 35.4 9.7 54 70-124 13-68 (599)
131 KOG0998 Synaptic vesicle prote 89.4 0.65 1.4E-05 42.4 4.9 144 57-205 11-191 (847)
132 KOG4578 Uncharacterized conser 89.4 0.3 6.5E-06 38.6 2.4 68 55-122 331-399 (421)
133 KOG2243 Ca2+ release channel ( 88.9 0.84 1.8E-05 43.2 5.0 60 61-121 4061-4120(5019)
134 PF08976 DUF1880: Domain of un 86.7 0.69 1.5E-05 30.9 2.5 32 173-204 4-35 (118)
135 KOG4286 Dystrophin-like protei 86.7 16 0.00034 32.9 11.0 133 55-202 418-578 (966)
136 PLN02222 phosphoinositide phos 85.0 3.5 7.6E-05 35.9 6.6 65 140-206 25-92 (581)
137 KOG1707 Predicted Ras related/ 84.7 6.4 0.00014 34.1 7.8 38 137-174 192-230 (625)
138 KOG3866 DNA-binding protein of 84.1 4.5 9.7E-05 32.1 6.2 94 75-168 225-324 (442)
139 KOG2871 Uncharacterized conser 83.8 1.2 2.7E-05 35.9 3.1 64 139-202 308-372 (449)
140 TIGR01848 PHA_reg_PhaR polyhyd 83.5 3.9 8.4E-05 26.9 4.8 50 147-196 10-69 (107)
141 PLN02228 Phosphoinositide phos 83.4 5.5 0.00012 34.7 7.1 67 140-208 24-96 (567)
142 PF12174 RST: RCD1-SRO-TAF4 (R 83.1 1 2.2E-05 27.4 1.9 48 157-207 9-56 (70)
143 PF07879 PHB_acc_N: PHB/PHA ac 82.4 2.5 5.4E-05 25.0 3.2 39 147-185 10-58 (64)
144 PF14513 DAG_kinase_N: Diacylg 80.7 11 0.00023 26.3 6.5 68 108-188 6-81 (138)
145 PLN02230 phosphoinositide phos 80.0 8.3 0.00018 33.8 6.9 64 140-204 29-102 (598)
146 PF11116 DUF2624: Protein of u 79.6 9.2 0.0002 24.2 5.3 53 155-207 13-65 (85)
147 PF14513 DAG_kinase_N: Diacylg 79.5 2.1 4.6E-05 29.8 2.7 55 153-209 4-65 (138)
148 COG4103 Uncharacterized protei 77.5 9.6 0.00021 26.6 5.3 60 144-205 34-95 (148)
149 PF09069 EF-hand_3: EF-hand; 76.2 10 0.00022 24.3 4.9 28 140-169 49-76 (90)
150 KOG1265 Phospholipase C [Lipid 75.8 30 0.00065 31.9 9.1 124 75-204 206-353 (1189)
151 PF07308 DUF1456: Protein of u 74.6 16 0.00035 22.0 5.7 47 157-203 14-60 (68)
152 PF12174 RST: RCD1-SRO-TAF4 (R 73.6 9.5 0.0002 23.2 4.1 61 107-184 6-66 (70)
153 KOG2871 Uncharacterized conser 73.4 3.5 7.5E-05 33.5 2.7 66 55-120 307-373 (449)
154 PF01023 S_100: S-100/ICaBP ty 73.1 13 0.00028 20.2 4.2 31 139-169 5-37 (44)
155 PF08726 EFhand_Ca_insen: Ca2+ 72.1 5.6 0.00012 24.1 2.8 28 56-84 5-32 (69)
156 PLN02223 phosphoinositide phos 71.1 17 0.00038 31.4 6.5 65 140-205 16-93 (537)
157 KOG0039 Ferric reductase, NADH 70.5 9.1 0.0002 34.1 5.0 64 140-204 18-89 (646)
158 KOG3449 60S acidic ribosomal p 66.8 22 0.00048 23.5 4.9 53 143-200 4-56 (112)
159 PLN02228 Phosphoinositide phos 66.5 37 0.00081 29.8 7.7 66 55-122 22-93 (567)
160 PLN02222 phosphoinositide phos 66.4 31 0.00067 30.3 7.2 66 55-122 23-91 (581)
161 PF09068 EF-hand_2: EF hand; 65.9 40 0.00088 23.1 6.5 68 55-122 39-126 (127)
162 PF08976 DUF1880: Domain of un 65.5 5.5 0.00012 26.7 2.0 32 90-121 4-35 (118)
163 PTZ00373 60S Acidic ribosomal 65.1 29 0.00064 23.2 5.4 52 144-200 7-58 (112)
164 cd07313 terB_like_2 tellurium 64.9 13 0.00027 24.2 3.8 52 154-205 13-66 (104)
165 KOG4301 Beta-dystrobrevin [Cyt 63.3 42 0.0009 27.2 6.7 92 95-203 112-214 (434)
166 PF00404 Dockerin_1: Dockerin 62.2 9.9 0.00021 17.1 1.9 13 151-163 2-14 (21)
167 PLN02230 phosphoinositide phos 61.3 53 0.0011 29.1 7.7 66 55-121 27-102 (598)
168 KOG4286 Dystrophin-like protei 60.9 22 0.00047 32.0 5.3 106 59-167 472-579 (966)
169 cd05833 Ribosomal_P2 Ribosomal 60.0 40 0.00088 22.4 5.4 55 145-204 6-60 (109)
170 PF11116 DUF2624: Protein of u 59.9 42 0.00091 21.3 8.4 70 72-149 13-82 (85)
171 PF12631 GTPase_Cys_C: Catalyt 57.4 38 0.00082 20.5 4.7 48 138-185 21-72 (73)
172 cd07313 terB_like_2 tellurium 55.3 54 0.0012 21.1 7.5 83 71-165 13-97 (104)
173 PF04157 EAP30: EAP30/Vps36 fa 54.9 91 0.002 23.6 12.5 86 77-190 61-150 (223)
174 KOG1264 Phospholipase C [Lipid 54.7 78 0.0017 29.2 7.6 139 57-204 144-293 (1267)
175 PF08414 NADPH_Ox: Respiratory 54.7 58 0.0013 21.3 6.0 61 57-122 30-93 (100)
176 PF03672 UPF0154: Uncharacteri 53.9 31 0.00068 20.5 3.6 33 154-186 29-61 (64)
177 KOG4004 Matricellular protein 53.5 4.2 9.2E-05 30.0 -0.1 48 106-166 201-248 (259)
178 KOG0039 Ferric reductase, NADH 52.3 68 0.0015 28.8 7.1 89 71-169 2-90 (646)
179 PF03672 UPF0154: Uncharacteri 52.0 41 0.00089 20.0 3.9 32 71-102 29-60 (64)
180 TIGR00624 tag DNA-3-methyladen 51.7 36 0.00078 25.0 4.4 45 55-99 51-95 (179)
181 KOG3449 60S acidic ribosomal p 50.6 73 0.0016 21.2 5.3 53 61-118 5-57 (112)
182 PLN00138 large subunit ribosom 50.2 71 0.0015 21.4 5.4 50 146-200 7-56 (113)
183 KOG3077 Uncharacterized conser 50.2 1.2E+02 0.0026 23.7 13.8 115 55-170 62-187 (260)
184 COG2818 Tag 3-methyladenine DN 50.2 1E+02 0.0022 22.8 6.6 80 10-99 17-97 (188)
185 PF07308 DUF1456: Protein of u 49.1 58 0.0012 19.6 5.5 49 74-122 14-62 (68)
186 PF06648 DUF1160: Protein of u 49.1 42 0.00092 22.9 4.2 46 138-186 35-81 (122)
187 KOG4301 Beta-dystrobrevin [Cyt 48.8 42 0.0009 27.2 4.6 65 144-209 114-178 (434)
188 KOG4403 Cell surface glycoprot 48.6 1.1E+02 0.0024 25.8 7.1 92 56-153 67-164 (575)
189 TIGR03573 WbuX N-acetyl sugar 48.6 40 0.00087 27.5 4.8 42 154-201 300-341 (343)
190 PRK00523 hypothetical protein; 48.2 42 0.00092 20.4 3.6 42 143-185 27-68 (72)
191 PF08461 HTH_12: Ribonuclease 47.7 27 0.00058 20.8 2.8 37 153-189 10-46 (66)
192 COG2036 HHT1 Histones H3 and H 47.7 74 0.0016 20.5 6.0 82 73-172 3-87 (91)
193 COG3763 Uncharacterized protei 47.6 50 0.0011 20.0 3.8 43 143-186 26-68 (71)
194 PF07499 RuvA_C: RuvA, C-termi 47.2 45 0.00097 18.2 3.5 40 160-203 4-43 (47)
195 cd07316 terB_like_DjlA N-termi 47.1 52 0.0011 21.2 4.5 53 154-206 13-66 (106)
196 PF12419 DUF3670: SNF2 Helicas 46.3 32 0.00068 24.0 3.4 50 153-202 80-139 (141)
197 PRK00523 hypothetical protein; 45.6 56 0.0012 19.9 3.8 32 71-102 37-68 (72)
198 KOG4004 Matricellular protein 44.8 8.7 0.00019 28.4 0.4 57 145-203 192-249 (259)
199 KOG2301 Voltage-gated Ca2+ cha 44.5 17 0.00037 35.8 2.4 69 138-207 1415-1487(1592)
200 PF05099 TerB: Tellurite resis 44.1 32 0.00069 23.6 3.2 80 70-161 36-117 (140)
201 PF12987 DUF3871: Domain of un 43.1 1.4E+02 0.0029 23.9 6.5 67 140-206 192-287 (323)
202 PF03979 Sigma70_r1_1: Sigma-7 42.9 24 0.00052 22.0 2.2 32 153-186 18-49 (82)
203 PF01885 PTS_2-RNA: RNA 2'-pho 42.8 48 0.001 24.4 4.0 37 150-186 26-62 (186)
204 KOG2301 Voltage-gated Ca2+ cha 42.1 49 0.0011 32.9 4.9 70 51-121 1411-1484(1592)
205 KOG0506 Glutaminase (contains 41.8 44 0.00095 28.5 4.0 62 60-121 89-158 (622)
206 PTZ00373 60S Acidic ribosomal 41.3 1.1E+02 0.0024 20.6 5.5 51 62-117 8-58 (112)
207 smart00549 TAFH TAF homology. 40.4 1E+02 0.0022 19.8 4.6 33 175-210 25-57 (92)
208 PRK01844 hypothetical protein; 39.9 65 0.0014 19.6 3.5 42 143-185 26-67 (72)
209 PRK10353 3-methyl-adenine DNA 39.6 70 0.0015 23.6 4.4 45 55-99 52-96 (187)
210 COG5394 Uncharacterized protei 36.7 1.4E+02 0.0031 21.4 5.3 58 147-205 19-87 (193)
211 PF02761 Cbl_N2: CBL proto-onc 36.2 1.1E+02 0.0025 19.3 5.5 53 71-123 20-72 (85)
212 PF09336 Vps4_C: Vps4 C termin 36.1 60 0.0013 19.1 3.0 26 156-181 29-54 (62)
213 PF09373 PMBR: Pseudomurein-bi 35.8 39 0.00085 16.9 1.9 16 190-205 2-17 (33)
214 PF11848 DUF3368: Domain of un 35.6 80 0.0017 17.3 3.8 32 154-185 15-47 (48)
215 PRK00819 RNA 2'-phosphotransfe 35.4 91 0.002 22.9 4.4 36 151-186 28-63 (179)
216 cd04411 Ribosomal_P1_P2_L12p R 35.2 1.3E+02 0.0029 19.8 5.8 43 157-204 17-59 (105)
217 PF09107 SelB-wing_3: Elongati 34.6 63 0.0014 18.1 2.8 30 154-188 8-37 (50)
218 PRK09430 djlA Dna-J like membr 34.2 2.3E+02 0.005 22.2 11.1 101 70-184 68-174 (267)
219 PHA02105 hypothetical protein 33.9 86 0.0019 18.1 3.2 49 73-121 4-57 (68)
220 PF03997 VPS28: VPS28 protein; 33.6 2E+02 0.0043 21.3 7.7 62 135-202 121-187 (188)
221 cd08315 Death_TRAILR_DR4_DR5 D 33.6 1.3E+02 0.0029 19.4 9.1 89 56-183 3-91 (96)
222 PLN03225 Serine/threonine-prot 32.7 56 0.0012 28.7 3.5 62 58-119 485-546 (566)
223 cd05833 Ribosomal_P2 Ribosomal 32.2 1.6E+02 0.0034 19.7 5.5 55 62-121 6-60 (109)
224 PRK06402 rpl12p 50S ribosomal 32.1 1.5E+02 0.0034 19.6 5.6 41 156-201 16-56 (106)
225 KOG0033 Ca2+/calmodulin-depend 31.9 37 0.00081 26.5 2.0 29 5-33 259-293 (355)
226 PF01325 Fe_dep_repress: Iron 31.6 95 0.0021 18.0 3.4 49 139-196 7-55 (60)
227 PF14164 YqzH: YqzH-like prote 31.4 1.2E+02 0.0026 18.1 4.8 33 137-169 5-38 (64)
228 PLN02223 phosphoinositide phos 31.1 2.5E+02 0.0055 24.6 7.0 67 55-122 14-93 (537)
229 TIGR02675 tape_meas_nterm tape 30.6 69 0.0015 19.6 2.8 16 153-168 27-42 (75)
230 PF08044 DUF1707: Domain of un 30.4 88 0.0019 17.7 3.0 31 154-184 21-51 (53)
231 KOG1785 Tyrosine kinase negati 30.2 3.2E+02 0.0068 23.0 7.0 83 73-169 190-275 (563)
232 COG5069 SAC6 Ca2+-binding acti 30.1 1.6E+02 0.0034 25.4 5.4 80 57-151 485-565 (612)
233 TIGR01639 P_fal_TIGR01639 Plas 29.6 1.2E+02 0.0027 17.7 3.9 30 72-101 8-37 (61)
234 cd00076 H4 Histone H4, one of 29.4 1.5E+02 0.0033 18.7 8.1 67 89-173 13-82 (85)
235 PF11829 DUF3349: Protein of u 29.2 72 0.0016 20.7 2.7 49 157-205 20-68 (96)
236 TIGR00135 gatC glutamyl-tRNA(G 28.3 1.2E+02 0.0025 19.3 3.7 29 157-185 1-29 (93)
237 KOG4070 Putative signal transd 28.2 1.1E+02 0.0023 21.8 3.6 56 151-206 27-87 (180)
238 PF11020 DUF2610: Domain of un 27.1 1E+02 0.0022 19.2 3.0 42 165-206 37-79 (82)
239 PTZ00015 histone H4; Provision 27.1 1.9E+02 0.0041 19.1 8.3 68 90-172 31-98 (102)
240 KOG1954 Endocytosis/signaling 26.8 1.4E+02 0.0029 25.1 4.4 60 58-120 445-504 (532)
241 PF01316 Arg_repressor: Argini 26.8 1.4E+02 0.003 18.1 3.5 32 155-186 18-49 (70)
242 PRK09430 djlA Dna-J like membr 26.7 1.6E+02 0.0035 23.1 4.8 48 154-205 69-121 (267)
243 PLN00138 large subunit ribosom 25.5 2.2E+02 0.0047 19.2 5.4 47 66-117 10-56 (113)
244 PF06384 ICAT: Beta-catenin-in 25.5 98 0.0021 19.2 2.7 24 161-184 21-44 (78)
245 cd00086 homeodomain Homeodomai 25.2 1.3E+02 0.0029 16.6 5.7 39 140-185 13-51 (59)
246 PF02885 Glycos_trans_3N: Glyc 25.2 1.5E+02 0.0033 17.3 3.7 31 155-185 13-44 (66)
247 PF13592 HTH_33: Winged helix- 25.1 1.5E+02 0.0032 17.0 3.5 32 155-186 3-35 (60)
248 cd08324 CARD_NOD1_CARD4 Caspas 24.7 1.9E+02 0.0042 18.3 5.2 49 153-206 26-74 (85)
249 PF09312 SurA_N: SurA N-termin 24.6 1.7E+02 0.0037 19.5 4.1 42 157-204 67-110 (118)
250 PF07862 Nif11: Nitrogen fixat 24.5 1.2E+02 0.0025 16.6 2.8 21 158-178 28-48 (49)
251 cd08332 CARD_CASP2 Caspase act 24.0 2E+02 0.0043 18.3 4.3 46 154-204 32-77 (90)
252 cd08330 CARD_ASC_NALP1 Caspase 24.0 1.9E+02 0.0041 18.0 4.6 47 153-204 26-72 (82)
253 KOG4403 Cell surface glycoprot 23.9 1.3E+02 0.0029 25.3 4.0 58 105-169 40-97 (575)
254 PF02337 Gag_p10: Retroviral G 23.8 1.9E+02 0.0041 18.6 3.9 39 162-200 14-57 (90)
255 PRK00034 gatC aspartyl/glutamy 23.8 1.6E+02 0.0034 18.7 3.7 30 156-185 2-31 (95)
256 smart00513 SAP Putative DNA-bi 23.7 1.1E+02 0.0024 15.3 2.5 19 156-174 3-21 (35)
257 PF15144 DUF4576: Domain of un 23.7 40 0.00086 20.8 0.7 44 69-113 36-79 (88)
258 PF06207 DUF1002: Protein of u 23.7 1.4E+02 0.0031 22.8 3.9 47 158-204 173-223 (225)
259 PF14069 SpoVIF: Stage VI spor 23.1 2E+02 0.0044 17.9 4.8 44 158-202 29-76 (79)
260 TIGR03412 iscX_yfhJ FeS assemb 23.0 1.8E+02 0.0038 17.3 4.0 41 176-216 7-47 (63)
261 COG2058 RPP1A Ribosomal protei 22.7 2.4E+02 0.0053 18.8 4.7 44 156-204 16-59 (109)
262 KOG1954 Endocytosis/signaling 22.7 1.3E+02 0.0028 25.1 3.7 57 142-201 446-502 (532)
263 PF02037 SAP: SAP domain; Int 22.7 1.1E+02 0.0024 15.4 2.3 19 156-174 3-21 (35)
264 cd05831 Ribosomal_P1 Ribosomal 22.6 2.4E+02 0.0051 18.6 4.5 43 155-202 16-58 (103)
265 PRK14981 DNA-directed RNA poly 22.5 1.5E+02 0.0033 19.7 3.5 27 158-184 80-106 (112)
266 PF11593 Med3: Mediator comple 22.4 4.6E+02 0.0099 21.8 7.8 52 71-124 5-57 (379)
267 PF01885 PTS_2-RNA: RNA 2'-pho 22.3 1.7E+02 0.0038 21.5 4.1 37 67-103 26-62 (186)
268 COG1460 Uncharacterized protei 22.3 1.2E+02 0.0026 20.4 2.8 30 157-186 80-109 (114)
269 PF07128 DUF1380: Protein of u 22.2 1.7E+02 0.0037 20.5 3.7 48 157-204 27-79 (139)
270 KOG4629 Predicted mechanosensi 21.8 3.7E+02 0.0079 24.7 6.5 62 139-207 403-464 (714)
271 COG2818 Tag 3-methyladenine DN 21.7 82 0.0018 23.2 2.2 45 138-182 53-97 (188)
272 PF13608 Potyvirid-P3: Protein 21.5 2E+02 0.0044 24.5 4.8 98 92-196 288-408 (445)
273 cd08327 CARD_RAIDD Caspase act 21.2 2.4E+02 0.0052 18.2 4.9 47 153-204 32-78 (94)
274 PRK00441 argR arginine repress 21.2 2.3E+02 0.0049 20.1 4.3 42 154-195 16-61 (149)
275 KOG0506 Glutaminase (contains 20.8 1.3E+02 0.0028 25.9 3.4 61 144-204 90-158 (622)
276 smart00874 B5 tRNA synthetase 20.6 2E+02 0.0043 16.9 3.5 17 170-186 16-32 (71)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=161.34 Aligned_cols=144 Identities=31% Similarity=0.494 Sum_probs=133.8
Q ss_pred CCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCCh
Q 027591 50 PKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDP 129 (221)
Q Consensus 50 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 129 (221)
....+++++++++|..+|++++|.|+..+|..+++.+|..++..++..++..++. +.+.|+|.+|+.++....... +
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~--~ 89 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG--D 89 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC--C
Confidence 4456788999999999999999999999999999999999999999999999999 899999999999999876532 1
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 130 TALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 130 ~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
..+++..+|+.||++++|+|+..+++.+++.+|..+++++++.++..++.+++|.|+|++|.+.+..
T Consensus 90 --------~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 --------KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred --------cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 2489999999999999999999999999999999999999999999999999999999999998764
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.94 E-value=4.2e-25 Score=157.47 Aligned_cols=146 Identities=34% Similarity=0.514 Sum_probs=132.6
Q ss_pred chhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHH
Q 027591 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTAL 132 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 132 (221)
......++.+|..+|.+++|+|+..+|..+++.+|..++..++..++..+|.+++|.|++.+|+.++...........
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~-- 81 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE-- 81 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc--
Confidence 456788999999999999999999999999999999999999999999999999999999999999997654321111
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 133 RALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 133 ~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
.....++.+|+.||++++|+||..||+.+|..+|.+.+.+++..+++.+|.+++|.|+|++|+.+|..
T Consensus 82 ----~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ----ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ----ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 12358999999999999999999999999999999999999999999999999999999999998864
No 3
>PTZ00183 centrin; Provisional
Probab=99.89 E-value=2e-21 Score=139.79 Aligned_cols=142 Identities=25% Similarity=0.418 Sum_probs=128.6
Q ss_pred chhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHH
Q 027591 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTAL 132 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 132 (221)
+.+...+..+|..+|.+++|.|+..+|..++..++..++...+..++..+|.+++|.|+|.+|+..+....... +
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~--~--- 87 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER--D--- 87 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC--C---
Confidence 45778899999999999999999999999999999888999999999999999999999999999887643211 0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 133 RALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 133 ~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
....+..+|+.+|.+++|+|+..+|..++...|..++..++..++..++.+++|.|+|.+|..++..
T Consensus 88 -----~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 88 -----PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred -----cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 1266889999999999999999999999999999999999999999999999999999999999876
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.89 E-value=2.3e-21 Score=138.06 Aligned_cols=141 Identities=27% Similarity=0.469 Sum_probs=127.3
Q ss_pred chhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHH
Q 027591 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTAL 132 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 132 (221)
....+.++..|..+|.+++|.|+..+|..++..++..++.+.+..++..++.+++|.|+|++|+.++....... .
T Consensus 7 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~--~--- 81 (149)
T PTZ00184 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT--D--- 81 (149)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC--c---
Confidence 45677899999999999999999999999999999888999999999999999999999999999988654321 0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q 027591 133 RALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 203 (221)
Q Consensus 133 ~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~ 203 (221)
....+..+|+.+|.+++|+|+.++|..++...|..++...+..++..+|.+++|.|+|.+|+.++.
T Consensus 82 -----~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 82 -----SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred -----HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 225678999999999999999999999999999999999999999999999999999999998875
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.6e-21 Score=132.52 Aligned_cols=142 Identities=30% Similarity=0.441 Sum_probs=131.6
Q ss_pred chhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHH
Q 027591 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTAL 132 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 132 (221)
+++.+.++.+|..||++++|+|...+|..+++.+|..+..+++..++..+|.++.|.|+|++|+..+....... +
T Consensus 29 ~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~-d---- 103 (172)
T KOG0028|consen 29 EEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER-D---- 103 (172)
T ss_pred HHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc-C----
Confidence 45668999999999999999999999999999999999999999999999999999999999999987765432 2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 133 RALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 133 ~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
..+.+..+|+.+|-+++|.|+..+|+.+.+.+|.+++++++..+++.+|.+++|.|+-++|..+|.+
T Consensus 104 -----t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 -----TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred -----cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 2388999999999999999999999999999999999999999999999999999999999998865
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.86 E-value=4.7e-20 Score=125.48 Aligned_cols=137 Identities=22% Similarity=0.401 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHH
Q 027591 54 DSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALR 133 (221)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 133 (221)
.++++++++|..+|.|++|.|..++|+.++.++|..++++++..++.. ..|.|+|.-|+.++...+... +|
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gt-dp---- 99 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGT-DP---- 99 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCC-CH----
Confidence 489999999999999999999999999999999999999999999955 578999999999998776542 22
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 134 ALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 134 ~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
.+.+..+|+.||.+++|.|..+.|+.+|...|..+++++|+.+++.+..+..|.|+|..|+.++++
T Consensus 100 -----e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 100 -----EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred -----HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 378899999999999999999999999999999999999999999999999999999999999873
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.85 E-value=4.4e-20 Score=123.52 Aligned_cols=144 Identities=22% Similarity=0.332 Sum_probs=128.2
Q ss_pred CCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC--CCCcccHHHHHHHHHHhhhccCC
Q 027591 51 KIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDIN--KDMGMKFNEFIVLLCLVYLLKDD 128 (221)
Q Consensus 51 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--~~~~i~~~ef~~~~~~~~~~~~~ 128 (221)
..+++..+++++|..||..++|+|+..+.-.+|+.+|.+|++.++......+..+ +-.+++|++|+.++..+.+.+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk-- 82 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK-- 82 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc--
Confidence 3456778999999999999999999999999999999999999999999888766 446899999999999886542
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q 027591 129 PTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 203 (221)
Q Consensus 129 ~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~ 203 (221)
...+.+.+..-+++||++++|.|...||+.+|..+|..++++++..++.... |++|.|+|+.|++.+.
T Consensus 83 ------~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 83 ------DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred ------ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 2234577888999999999999999999999999999999999999999876 8899999999998764
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=9.8e-19 Score=126.32 Aligned_cols=133 Identities=20% Similarity=0.304 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHH
Q 027591 56 LRNCKAIFEKFDEDSNGTIDHEELKKCFHKLE-IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRA 134 (221)
Q Consensus 56 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 134 (221)
...+...|...|++++|.|+..|+..+|.... -..+.+.+..|+..+|.+.+|.|++.||..++..+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------------ 123 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------------ 123 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH------------
Confidence 34688889999999999999999999998544 45789999999999999999999999999999976
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 135 LEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 135 ~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
...+.+|+.||+|++|.|+..||+++|..+|..++++..+.+++.++....|.|.+.+|+.++..+
T Consensus 124 -----~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 124 -----NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred -----HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999998889999999999998664
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.79 E-value=6.3e-18 Score=122.56 Aligned_cols=139 Identities=27% Similarity=0.413 Sum_probs=114.4
Q ss_pred chhHHHHHHHHHhhcCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCc-ccHHHHHHHHHHhhhccCChh
Q 027591 53 DDSLRNCKAIFEKFDED-SNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMG-MKFNEFIVLLCLVYLLKDDPT 130 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~~-~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~-i~~~ef~~~~~~~~~~~~~~~ 130 (221)
..++..+...|..++.+ ++|.|+.+||..+. .+..++ ...+++..++.+++|. |+|++|+..+..+.... .
T Consensus 29 ~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~--~- 101 (187)
T KOG0034|consen 29 ANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA--S- 101 (187)
T ss_pred HHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc--c-
Confidence 56888999999999999 99999999999998 333333 3456677777777777 99999999999986542 1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCCCc--H----HHHHHHHhhcCCCCCCccchHHHHHHHH
Q 027591 131 ALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGST--G----RIAIKRFEEMDWDKNGMVNFKEFLFAFT 203 (221)
Q Consensus 131 ~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~~~~--~----~~~~~l~~~~d~~~~g~Is~~eF~~~~~ 203 (221)
..++++.+|+.||.+++|+|+++|+.+++..+ |...+ + +.++.++..+|.++||+||++||+.++.
T Consensus 102 -------~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 102 -------KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred -------HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 12689999999999999999999999999988 54444 3 4556778889999999999999999987
Q ss_pred HH
Q 027591 204 RW 205 (221)
Q Consensus 204 ~~ 205 (221)
+.
T Consensus 175 ~~ 176 (187)
T KOG0034|consen 175 KQ 176 (187)
T ss_pred cC
Confidence 64
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.78 E-value=2.4e-17 Score=119.57 Aligned_cols=137 Identities=26% Similarity=0.383 Sum_probs=114.5
Q ss_pred HHHHHHHHhhcCC-CCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHH
Q 027591 57 RNCKAIFEKFDED-SNGTIDHEELKKCFHKLEI-KFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRA 134 (221)
Q Consensus 57 ~~~~~~F~~~D~~-~~G~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 134 (221)
.+++.+|+.|-.+ .+|.++..+|+.++..+.. .-+...+..+|..+|.+++|.|+|.||+..+..+....
T Consensus 26 ~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt-------- 97 (193)
T KOG0044|consen 26 KEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT-------- 97 (193)
T ss_pred HHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc--------
Confidence 3455555555444 4999999999999999875 45667789999999999999999999999999887653
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc----C-------CCCcHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q 027591 135 LEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES----G-------EGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 203 (221)
Q Consensus 135 ~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~----g-------~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~ 203 (221)
..++++.+|+.||.+|+|+||+.|+..++..+ | .....+.+..+|+.+|.|.||.||+++|.....
T Consensus 98 ---~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 98 ---LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred ---HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 34778889999999999999999999999887 3 223567889999999999999999999998875
Q ss_pred H
Q 027591 204 R 204 (221)
Q Consensus 204 ~ 204 (221)
.
T Consensus 175 ~ 175 (193)
T KOG0044|consen 175 A 175 (193)
T ss_pred h
Confidence 4
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.73 E-value=2.1e-16 Score=123.95 Aligned_cols=139 Identities=24% Similarity=0.327 Sum_probs=127.9
Q ss_pred CchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChh
Q 027591 52 IDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIK-FTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPT 130 (221)
Q Consensus 52 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~ 130 (221)
.++...+++.+|..+|.+++|.++..++.+.+.++... +..+....++..+|.+.+|.|+|.+|...+..
T Consensus 9 ~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~--------- 79 (463)
T KOG0036|consen 9 DEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN--------- 79 (463)
T ss_pred cHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH---------
Confidence 34556789999999999999999999999999998766 78888999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHh
Q 027591 131 ALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 131 ~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~ 206 (221)
.+.++.++|+..|.+++|.|+..|+.+.|+..|.++++++++.+++.+|+++.+.|++++|.+++.-+.
T Consensus 80 -------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 80 -------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred -------hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 347889999999999999999999999999999999999999999999999999999999999886554
No 12
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.69 E-value=9.1e-16 Score=111.05 Aligned_cols=139 Identities=22% Similarity=0.394 Sum_probs=115.8
Q ss_pred CCCCCcccccc----cCCcccHHHH-HHHHHHHhhhhCCCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHH
Q 027591 3 GIVGKPESATS----TWMPETKLEA-KMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHE 77 (221)
Q Consensus 3 g~~~~~~~~~~----~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~ 77 (221)
|.|++.++..+ .|.+-..... -+|.-+++...++.++.+|..++. .+..|+.+|+.+|.|++|.|+..
T Consensus 72 g~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~-------~i~~Wr~vF~~~D~D~SG~I~~s 144 (221)
T KOG0037|consen 72 GRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK-------YINQWRNVFRTYDRDRSGTIDSS 144 (221)
T ss_pred ccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH-------HHHHHHHHHHhcccCCCCcccHH
Confidence 44555555555 5555554443 455555666688999999999997 67899999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 027591 78 ELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYV 157 (221)
Q Consensus 78 e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~I 157 (221)
||+.+|..+|..++++..+.+++.+|..++|.|.|++|+.+|..+ ..+.++|+.+|.+..|.|
T Consensus 145 EL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-----------------~~lt~~Fr~~D~~q~G~i 207 (221)
T KOG0037|consen 145 ELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-----------------QRLTEAFRRRDTAQQGSI 207 (221)
T ss_pred HHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-----------------HHHHHHHHHhccccceeE
Confidence 999999999999999999999999998889999999999999876 778899999999999976
Q ss_pred cH--HHHHHH
Q 027591 158 SR--SEMTQA 165 (221)
Q Consensus 158 s~--~el~~~ 165 (221)
+. ++|..+
T Consensus 208 ~~~y~dfl~~ 217 (221)
T KOG0037|consen 208 TISYDDFLQM 217 (221)
T ss_pred EEeHHHHHHH
Confidence 54 566554
No 13
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.9e-16 Score=119.87 Aligned_cols=156 Identities=24% Similarity=0.271 Sum_probs=131.1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHH
Q 027591 56 LRNCKAIFEKFDEDSNGTIDHEELKKCFHKLE-IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRA 134 (221)
Q Consensus 56 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 134 (221)
+.+-++.|+..|.|++|.+|.+||..+|.--. ..+..-.+...+...|+|++|.|+++||+.-+...... .+.|
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~---~~ep-- 236 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGN---EEEP-- 236 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCC---CCCc--
Confidence 45667889999999999999999999986532 34556667888899999999999999999988765432 1111
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCCCCCc
Q 027591 135 LEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCGVGENEDE 214 (221)
Q Consensus 135 ~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~~~~~~~~ 214 (221)
.|....-.+.+..+|+|++|+|+.+|++..+...+......++..|+...|.|+||++|+++.+.-..-++++-+++++
T Consensus 237 -eWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d~FvgSqAtdyg 315 (325)
T KOG4223|consen 237 -EWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEHYDVFVGSQATDYG 315 (325)
T ss_pred -ccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhCcceeeeeecccch
Confidence 3334445577889999999999999999999888888899999999999999999999999999999999999999998
Q ss_pred ccc
Q 027591 215 EEG 217 (221)
Q Consensus 215 ~~~ 217 (221)
++-
T Consensus 316 e~L 318 (325)
T KOG4223|consen 316 EDL 318 (325)
T ss_pred hhc
Confidence 863
No 14
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.63 E-value=6.7e-15 Score=106.89 Aligned_cols=146 Identities=21% Similarity=0.297 Sum_probs=120.5
Q ss_pred HHHHHHHHhhh-hCCCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 027591 23 AKMVEAMQRRA-AEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEA 101 (221)
Q Consensus 23 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 101 (221)
+..+..+.... .+.....+|..+++.+.+..+.......+|+.+|.+++|.|++.||..++..+.....++.+.-.|+.
T Consensus 29 ~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~l 108 (193)
T KOG0044|consen 29 QQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRL 108 (193)
T ss_pred HHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhhee
Confidence 44444444433 56788899999999887778888899999999999999999999999999888777888888899999
Q ss_pred hCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 027591 102 CDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTE 168 (221)
Q Consensus 102 ~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~ 168 (221)
||.+++|.|+++|++.++..++........+.........+..+|+.+|.|++|.||.+||...+.+
T Consensus 109 yD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 109 YDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred ecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 9999999999999999999987754432222223334588899999999999999999999998764
No 15
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.56 E-value=3.8e-14 Score=99.56 Aligned_cols=118 Identities=22% Similarity=0.380 Sum_probs=98.3
Q ss_pred CCCCCcccccc----cCCcccHHHHHHHHHHHhhhhCCCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHH
Q 027591 3 GIVGKPESATS----TWMPETKLEAKMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEE 78 (221)
Q Consensus 3 g~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e 78 (221)
|.|+..++.+- +..+...+..+++..+.. ..+...+.+|..++..........+++..+|+.||.|++|+|+..+
T Consensus 35 G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~e 113 (160)
T COG5126 35 GLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGE 113 (160)
T ss_pred CCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHH
Confidence 44444444444 333445555555555555 4588999999999999887888899999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 027591 79 LKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (221)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 121 (221)
++.+++.+|-.+++++++.++..++.+++|.|+|++|+..+..
T Consensus 114 L~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 114 LRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998764
No 16
>PLN02964 phosphatidylserine decarboxylase
Probab=99.49 E-value=7.8e-13 Score=112.23 Aligned_cols=135 Identities=17% Similarity=0.161 Sum_probs=105.9
Q ss_pred CCCCHHHHHHHHHh--CCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHhhCCCCCC
Q 027591 35 EGTALKSFNSIILK--FPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLE-IKFTEEE---INDLFEACDINKDM 108 (221)
Q Consensus 35 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~---~~~l~~~~d~~~~~ 108 (221)
++............ ......+++.++++|..+|++++|.+ +..++..++ ..+++.+ +..+|..+|.+++|
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG 194 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDG 194 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 44444444444322 23334577899999999999999997 888888899 5888887 89999999999999
Q ss_pred cccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHh-------------cCCCCcH
Q 027591 109 GMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTE-------------SGEGSTG 175 (221)
Q Consensus 109 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~-------------~g~~~~~ 175 (221)
.|+++||+.++..+.... ..+.+..+|+.+|+|++|+|+.+||..++.. +|..++.
T Consensus 195 ~IdfdEFl~lL~~lg~~~-----------seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~ 263 (644)
T PLN02964 195 QLSFSEFSDLIKAFGNLV-----------AANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGV 263 (644)
T ss_pred eEcHHHHHHHHHHhccCC-----------CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccc
Confidence 999999999998653211 2367999999999999999999999999998 5666666
Q ss_pred -HHHHHHHhh
Q 027591 176 -RIAIKRFEE 184 (221)
Q Consensus 176 -~~~~~l~~~ 184 (221)
++++.|++.
T Consensus 264 ~~~~~~iiH~ 273 (644)
T PLN02964 264 SDKLNAMIHM 273 (644)
T ss_pred hhhHHHHHHH
Confidence 566666633
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.48 E-value=2.3e-13 Score=87.19 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhCC-CCCCcccHHHHHHHHHh-cCCCCcH-HHHHHHHhhcCCCCCCccchHHHHHHHHHHh
Q 027591 138 TFETLVDAFVFLDK-NKDGYVSRSEMTQAVTE-SGEGSTG-RIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 138 ~~~~~~~~f~~~D~-~~~G~Is~~el~~~l~~-~g~~~~~-~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~ 206 (221)
....+..+|+.||+ +++|+|+..||+.++.. +|..++. ..+..+++.+|.|++|+|+|++|..++....
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 44788999999999 99999999999999999 8888888 9999999999999999999999999998764
No 18
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=7.1e-13 Score=101.51 Aligned_cols=155 Identities=20% Similarity=0.270 Sum_probs=124.0
Q ss_pred chhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhcc---CCh
Q 027591 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLK---DDP 129 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~---~~~ 129 (221)
.+...++..++..+|.+++|.|+..++..++.....+....+..+-+..+|.+.+|.|+|+++..........+ .+.
T Consensus 73 ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 73 EESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred chhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 34678899999999999999999999999988766666777788888999999999999999998887532110 111
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhc
Q 027591 130 TALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 130 ~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~ 207 (221)
......+....+-+.-|+..|.|++|.+|++||..+|... ...+.+=.+..-+..+|+|+||.|++++|+.-|....+
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~ 231 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEG 231 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccC
Confidence 1112222233455678999999999999999999999876 44566778889999999999999999999998877665
No 19
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.47 E-value=1.6e-12 Score=103.11 Aligned_cols=148 Identities=18% Similarity=0.280 Sum_probs=118.1
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccC-ChhHH
Q 027591 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHK-LEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKD-DPTAL 132 (221)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~-~~~~~ 132 (221)
....+...|+.+|+.++|.|+...+..++.. .++.++-.-+..-+ ...+.+|.|.|.+....+..-..... ....-
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl--a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slv 539 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKL--ANGSDDGKVEYKSTLDNLDTEVILEEAGSSLV 539 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc--cCCCcCcceehHhHHHHhhhhhHHHHHHhHHH
Confidence 4567889999999999999999999999988 46777765544332 34566789999988877665322211 22233
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc----CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 133 RALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 133 ~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~----g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
+.+......+..+|+.+|.|++|.||.+||++++.-+ ...++.+++..+.+.+|.|+||.|+++||+.+++-
T Consensus 540 etLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 540 ETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 4455556778899999999999999999999999877 56789999999999999999999999999999864
No 20
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.46 E-value=2.9e-13 Score=96.43 Aligned_cols=105 Identities=24% Similarity=0.417 Sum_probs=88.3
Q ss_pred cccHHHHHHHHHHHhhhhCCCCHHHHHHHHHhCCCCch----hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCH
Q 027591 17 PETKLEAKMVEAMQRRAAEGTALKSFNSIILKFPKIDD----SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTE 92 (221)
Q Consensus 17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~ 92 (221)
+.......++..+.....+.+.+.+|..++........ ..+.++++|+.||.+++|+||..+|+.+|..+|...+.
T Consensus 41 ~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~ 120 (151)
T KOG0027|consen 41 PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTD 120 (151)
T ss_pred CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCH
Confidence 34445556666666656778889999998876643333 35699999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 027591 93 EEINDLFEACDINKDMGMKFNEFIVLLCL 121 (221)
Q Consensus 93 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 121 (221)
+++..++...|.+++|.|+|++|+.++..
T Consensus 121 ~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 121 EECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 99999999999999999999999998863
No 21
>PTZ00183 centrin; Provisional
Probab=99.42 E-value=1.6e-11 Score=88.03 Aligned_cols=124 Identities=20% Similarity=0.198 Sum_probs=99.7
Q ss_pred hhCCCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCccc
Q 027591 33 AAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKL-EIKFTEEEINDLFEACDINKDMGMK 111 (221)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~ 111 (221)
..+.++..+|..++..... ......+..+|..+|.+++|.|++.+|..++... ........+..+|..+|.+++|.|+
T Consensus 30 ~~G~i~~~e~~~~l~~~g~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~ 108 (158)
T PTZ00183 30 GSGTIDPKELKVAMRSLGF-EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKIS 108 (158)
T ss_pred CCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCc
Confidence 3566778888877765422 2234678999999999999999999999987653 3456678899999999999999999
Q ss_pred HHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 027591 112 FNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTE 168 (221)
Q Consensus 112 ~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~ 168 (221)
..+|..++....... ....+..+|..+|.+++|.|+.++|..++..
T Consensus 109 ~~e~~~~l~~~~~~l-----------~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 109 LKNLKRVAKELGETI-----------TDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCC-----------CHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 999999998653211 2367888999999999999999999998864
No 22
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.41 E-value=1.1e-12 Score=80.04 Aligned_cols=62 Identities=34% Similarity=0.588 Sum_probs=54.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcH----HHHHHHHhhcCCCCCCccchHHHHHHH
Q 027591 141 TLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTG----RIAIKRFEEMDWDKNGMVNFKEFLFAF 202 (221)
Q Consensus 141 ~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~----~~~~~l~~~~d~~~~g~Is~~eF~~~~ 202 (221)
+++.+|+.+|++++|+|+.+||..++...+...+. ..+..+++.+|++++|.|++.||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 46789999999999999999999999999866544 455556999999999999999999875
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.38 E-value=4.9e-12 Score=81.19 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-----cCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHh
Q 027591 138 TFETLVDAFVFLD-KNKDG-YVSRSEMTQAVTE-----SGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 138 ~~~~~~~~f~~~D-~~~~G-~Is~~el~~~l~~-----~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~ 206 (221)
....+..+|+.|| ++|+| +|+.++|+.+|+. .|...+++++..+++.+|.+++|+|+|++|+.++....
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3477899999998 79999 5999999999999 78889999999999999999999999999999987653
No 24
>PTZ00184 calmodulin; Provisional
Probab=99.37 E-value=6.7e-11 Score=83.87 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=100.7
Q ss_pred HHHHhhhhCCCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCC
Q 027591 27 EAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKL-EIKFTEEEINDLFEACDIN 105 (221)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~ 105 (221)
..++....+.++..+|..++...... .....+..+|..+|.+++|.|++.+|..++... ........+..+|..+|.+
T Consensus 18 ~~~D~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~ 96 (149)
T PTZ00184 18 SLFDKDGDGTITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRD 96 (149)
T ss_pred HHHcCCCCCcCCHHHHHHHHHHhCCC-CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCC
Confidence 33333446678888888887654322 234678999999999999999999999988764 3345567789999999999
Q ss_pred CCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 027591 106 KDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVT 167 (221)
Q Consensus 106 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~ 167 (221)
++|.|+.++|..++....... ....+..+|..+|.+++|.|+.+||..++.
T Consensus 97 ~~g~i~~~e~~~~l~~~~~~~-----------~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 97 GNGFISAAELRHVMTNLGEKL-----------TDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred CCCeEeHHHHHHHHHHHCCCC-----------CHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 999999999999987652211 226677889999999999999999998764
No 25
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.34 E-value=7.6e-12 Score=80.20 Aligned_cols=71 Identities=17% Similarity=0.334 Sum_probs=64.5
Q ss_pred chhHHHHHHHHHhhcC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q 027591 53 DDSLRNCKAIFEKFDE-DSNGTIDHEELKKCFHK-LEIKFTE-EEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~-~~~G~i~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 123 (221)
+..+..+..+|+.||+ +++|+|+..||+.++.. ++-.++. +++..++..+|.|++|.|+|+||+.++..+.
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3456789999999999 99999999999999999 8866777 8999999999999999999999999998763
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.31 E-value=1.5e-11 Score=78.97 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhCC-CC-CCcccHHHHHHHHHh---cCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhc
Q 027591 138 TFETLVDAFVFLDK-NK-DGYVSRSEMTQAVTE---SGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 138 ~~~~~~~~f~~~D~-~~-~G~Is~~el~~~l~~---~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~ 207 (221)
....+..+|+.||. +| +|+|+.+||+.++.. .|.+++++++..+++.+|.+++|+|+|++|+.++....-
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 44678889999998 67 899999999999974 599999999999999999999999999999999987643
No 27
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.30 E-value=3.3e-11 Score=87.68 Aligned_cols=120 Identities=19% Similarity=0.315 Sum_probs=101.9
Q ss_pred CCCCCcccccccCCcccHHHHHHHHHHHhhhhCC-CCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHH
Q 027591 3 GIVGKPESATSTWMPETKLEAKMVEAMQRRAAEG-TALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKK 81 (221)
Q Consensus 3 g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~ 81 (221)
|.++..+++..+-....++..+++..+.....+. .++.+|.+++..+........+++-+|+.||.+++|.|+.+++..
T Consensus 49 g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~ 128 (187)
T KOG0034|consen 49 GYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQ 128 (187)
T ss_pred CccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence 6678888888887778888899999988777555 999999999999988877778999999999999999999999999
Q ss_pred HHHHc-CCCCC--HH----HHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 82 CFHKL-EIKFT--EE----EINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 82 ~l~~~-~~~~~--~~----~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
++..+ +...+ ++ -+..++..+|.+++|.|+|+||+..+...
T Consensus 129 iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 129 ILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 99985 33343 33 35778889999999999999999999753
No 28
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.29 E-value=2.1e-11 Score=74.36 Aligned_cols=62 Identities=34% Similarity=0.682 Sum_probs=54.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHH----HHHHHHhhCCCCCCcccHHHHHHHH
Q 027591 58 NCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEE----INDLFEACDINKDMGMKFNEFIVLL 119 (221)
Q Consensus 58 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~----~~~l~~~~d~~~~~~i~~~ef~~~~ 119 (221)
+++++|+.+|.+++|.|+.+||..++..++...+... +..+|..+|.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999999987665544 5556999999999999999999864
No 29
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.28 E-value=2.9e-11 Score=78.67 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHhc-----CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcC
Q 027591 136 EATFETLVDAFVFLD-KNKDG-YVSRSEMTQAVTES-----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCGV 208 (221)
Q Consensus 136 ~~~~~~~~~~f~~~D-~~~~G-~Is~~el~~~l~~~-----g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~~ 208 (221)
+.....+..+|+.|| ++|+| +||..||+.++... +...++..+..+++.+|.+++|.|+|++|+.++..+...
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 334577889999999 78998 59999999999773 334578899999999999999999999999999887544
No 30
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=4.7e-11 Score=82.47 Aligned_cols=105 Identities=22% Similarity=0.375 Sum_probs=93.1
Q ss_pred cccHHHHHHHHHHHhhhhCCCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHH
Q 027591 17 PETKLEAKMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEIN 96 (221)
Q Consensus 17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~ 96 (221)
+.+....+++..+++...+.+.+.+|...+.......+..+.+..+|+.+|.|++|.|+..+|+.+...+|-+++++++.
T Consensus 66 ~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~ 145 (172)
T KOG0028|consen 66 PKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELM 145 (172)
T ss_pred cchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHH
Confidence 44455566777777777899999999999776666666899999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHH
Q 027591 97 DLFEACDINKDMGMKFNEFIVLLCL 121 (221)
Q Consensus 97 ~l~~~~d~~~~~~i~~~ef~~~~~~ 121 (221)
.++..+|.+++|.|+-++|..++..
T Consensus 146 eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 146 EMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHhcccccccccHHHHHHHHhc
Confidence 9999999999999999999988753
No 31
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.28 E-value=2.6e-11 Score=78.93 Aligned_cols=70 Identities=24% Similarity=0.385 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhC-CCCCCc-ccHHHHHHHHHh-cC----CCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhc
Q 027591 138 TFETLVDAFVFLD-KNKDGY-VSRSEMTQAVTE-SG----EGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 138 ~~~~~~~~f~~~D-~~~~G~-Is~~el~~~l~~-~g----~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~ 207 (221)
..+.++.+|+.|| ++++|+ |+..||+.+|+. +| ...++..+..++..+|.+++|.|+|++|+.++..+..
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 3477999999997 999994 999999999986 44 3568899999999999999999999999999987654
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.27 E-value=4.4e-11 Score=78.17 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhCC-CC-CCcccHHHHHHHHHh-----cCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 138 TFETLVDAFVFLDK-NK-DGYVSRSEMTQAVTE-----SGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 138 ~~~~~~~~f~~~D~-~~-~G~Is~~el~~~l~~-----~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
....+..+|..||. ++ +|+|+..||+.++.. +|..++...+..++..+|.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45788999999997 87 699999999999986 4677899999999999999999999999999988764
No 33
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.25 E-value=5.1e-11 Score=80.91 Aligned_cols=100 Identities=18% Similarity=0.278 Sum_probs=82.2
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCCCc
Q 027591 96 NDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGST 174 (221)
Q Consensus 96 ~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~~~~ 174 (221)
+++...+..+|.|.++|++|+.++..+.... | ..-++..+|+.||-|++++|...++...+.++ ...++
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~A-----P-----rdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs 143 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMA-----P-----RDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELS 143 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhC-----h-----HHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCC
Confidence 3555667789999999999999999886432 1 22456789999999999999999999999988 44577
Q ss_pred HHHHH----HHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 175 GRIAI----KRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 175 ~~~~~----~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
++++. .+++.+|.++||++++.+|..++.+.
T Consensus 144 ~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 144 DEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 77665 56777899999999999999998764
No 34
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.25 E-value=6.5e-11 Score=76.00 Aligned_cols=69 Identities=20% Similarity=0.427 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 54 DSLRNCKAIFEKFD-EDSNG-TIDHEELKKCFHK-----LEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 54 ~~~~~~~~~F~~~D-~~~~G-~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
..+..+..+|+.|| .+++| .|+..+|+.+|.. ++..++++++..+++.+|.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45678999999998 79999 5999999999999 8888999999999999999999999999999988764
No 35
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.23 E-value=2.4e-10 Score=90.89 Aligned_cols=154 Identities=16% Similarity=0.247 Sum_probs=122.3
Q ss_pred hhhhCCCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCC---HHHHHHHHHhhCCCCC
Q 027591 31 RRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFT---EEEINDLFEACDINKD 107 (221)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~---~~~~~~l~~~~d~~~~ 107 (221)
+..+.++...+|.+++..+ +.+.+.--|..+|+..+|.|+..+|..++-......+ ...++++-..++.. +
T Consensus 297 ~rg~~kLs~deF~~F~e~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~ 370 (489)
T KOG2643|consen 297 KRGNGKLSIDEFLKFQENL-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-G 370 (489)
T ss_pred cCCCccccHHHHHHHHHHH-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-C
Confidence 3346788899999988765 6677788899999999999999999998877542222 23567777777655 5
Q ss_pred CcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCCCcHHHHHHHHhhcC
Q 027591 108 MGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGSTGRIAIKRFEEMD 186 (221)
Q Consensus 108 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~~~~~~~~~~l~~~~d 186 (221)
..|+++||..++..+.+. ..+..+...|-.. .+.|+..+|+++.... |.++++..++-+|.-+|
T Consensus 371 ~gISl~Ef~~Ff~Fl~~l--------------~dfd~Al~fy~~A-g~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD 435 (489)
T KOG2643|consen 371 KGISLQEFKAFFRFLNNL--------------NDFDIALRFYHMA-GASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFD 435 (489)
T ss_pred CCcCHHHHHHHHHHHhhh--------------hHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCcccccceeeeEEEEEc
Confidence 569999999999887654 4444555555333 4779999999988876 99999999999999999
Q ss_pred CCCCCccchHHHHHHHHHH
Q 027591 187 WDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 187 ~~~~g~Is~~eF~~~~~~~ 205 (221)
.|+||.+++.||+.+|.+.
T Consensus 436 ~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 436 ENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred cCCCCcccHHHHHHHHHHH
Confidence 9999999999999999874
No 36
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.21 E-value=1.2e-10 Score=79.86 Aligned_cols=118 Identities=18% Similarity=0.333 Sum_probs=101.3
Q ss_pred CCCCCcccccccCCcccHHHHHHHHHHHhhhhCCCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 027591 3 GIVGKPESATSTWMPETKLEAKMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKC 82 (221)
Q Consensus 3 g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~ 82 (221)
|+|..+++..-.-..++..+.+.+..|.+..++++.+..|..++.......+....+..+|+.||.+++|.|....|+.+
T Consensus 47 G~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~ 126 (171)
T KOG0031|consen 47 GFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLREL 126 (171)
T ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHH
Confidence 34444444433333444556778888888899999999999999888777788899999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 027591 83 FHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLC 120 (221)
Q Consensus 83 l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 120 (221)
|...|-+++++++..+|+.+..+..|.++|..|+.++.
T Consensus 127 Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 127 LTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999999999999999999886
No 37
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.15 E-value=5.1e-10 Score=71.98 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=60.2
Q ss_pred HHHHHHHHHHh-hCCCCCC-cccHHHHHHHHHhc-----CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHh
Q 027591 138 TFETLVDAFVF-LDKNKDG-YVSRSEMTQAVTES-----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 138 ~~~~~~~~f~~-~D~~~~G-~Is~~el~~~l~~~-----g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~ 206 (221)
....+..+|+. +|++|+| +||.+||+.++... +...++..+..+++.+|.+++|+|+|++|+.++....
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 44778899998 6788876 99999999999886 3456789999999999999999999999999988764
No 38
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.15 E-value=1.7e-10 Score=67.33 Aligned_cols=52 Identities=31% Similarity=0.532 Sum_probs=49.1
Q ss_pred CCCcccHHHHHHHHHhcCCC-CcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 153 KDGYVSRSEMTQAVTESGEG-STGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 153 ~~G~Is~~el~~~l~~~g~~-~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
.+|.|+.++|+.+|..+|.. ++++++..+|..+|.+++|.|+|++|+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999888999 99999999999999999999999999999875
No 39
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.14 E-value=3.6e-10 Score=72.93 Aligned_cols=69 Identities=22% Similarity=0.353 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhCC--CCCCcccHHHHHHHHHh-cCCCC----cHHHHHHHHhhcCCCCCCccchHHHHHHHHHHh
Q 027591 138 TFETLVDAFVFLDK--NKDGYVSRSEMTQAVTE-SGEGS----TGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 138 ~~~~~~~~f~~~D~--~~~G~Is~~el~~~l~~-~g~~~----~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~ 206 (221)
....+..+|..||+ +++|.|+.++|..+++. +|..+ +...+..++..++.+++|.|+|++|+.++....
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 44678899999999 89999999999999986 45444 589999999999999999999999999988754
No 40
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.12 E-value=5.5e-10 Score=72.66 Aligned_cols=69 Identities=19% Similarity=0.427 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 54 DSLRNCKAIFEKFD-EDSNG-TIDHEELKKCFHK-LE----IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 54 ~~~~~~~~~F~~~D-~~~~G-~i~~~e~~~~l~~-~~----~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
..+..++++|..|| .+++| .|+..+|+.+|.. ++ ..++.+.+..++..+|.+++|.|+|++|+.++..+
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 45678999999997 99999 5999999999986 43 35688999999999999999999999999988765
No 41
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.11 E-value=7.7e-10 Score=72.57 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 139 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 139 ~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
...+..+|..+|.+++|.|+.+++..+++..| ++.+++..++..++.+.+|.|+|++|+.++...
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 36789999999999999999999999999876 788999999999999999999999999988653
No 42
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.11 E-value=9.8e-10 Score=72.08 Aligned_cols=72 Identities=19% Similarity=0.389 Sum_probs=64.8
Q ss_pred CchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhc
Q 027591 52 IDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLL 125 (221)
Q Consensus 52 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~ 125 (221)
...+...++.+|..+|.+++|.|+..++..++...+ ++.+++..++..+|.+++|.|+|++|+.++..+...
T Consensus 5 s~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~ 76 (96)
T smart00027 5 SPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK 76 (96)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH
Confidence 356778999999999999999999999999999865 688899999999999999999999999999876543
No 43
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.11 E-value=5.5e-10 Score=68.13 Aligned_cols=61 Identities=26% Similarity=0.351 Sum_probs=56.1
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 143 VDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 143 ~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
+.+|..+|++++|.|+.+|+..++...| ++...+..++..++.+++|.|+|.+|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 4689999999999999999999999887 588899999999999999999999999988654
No 44
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.11 E-value=6.4e-10 Score=72.35 Aligned_cols=70 Identities=21% Similarity=0.417 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q 027591 54 DSLRNCKAIFEKFD-EDSNG-TIDHEELKKCFHKL-----EIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (221)
Q Consensus 54 ~~~~~~~~~F~~~D-~~~~G-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 123 (221)
..+..+.++|..|| .|++| +|+..||+.++... ....++..+..++..+|.+++|.|+|+||+.++..+.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 35677899999999 78998 59999999999762 3345788999999999999999999999999998763
No 45
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.11 E-value=7.3e-10 Score=71.12 Aligned_cols=70 Identities=31% Similarity=0.543 Sum_probs=62.2
Q ss_pred chhHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHH---cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 53 DDSLRNCKAIFEKFDE-DS-NGTIDHEELKKCFHK---LEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~-~~-~G~i~~~e~~~~l~~---~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
...+..+-.+|.+||. ++ +|+|+..||+.++.. +|..++++++..+++.+|.+++|.|+|++|+.++..+
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3456778899999998 66 899999999999973 6888999999999999999999999999999988765
No 46
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.10 E-value=7.4e-10 Score=72.35 Aligned_cols=68 Identities=24% Similarity=0.439 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 55 SLRNCKAIFEKFDE-DS-NGTIDHEELKKCFHK-----LEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 55 ~~~~~~~~F~~~D~-~~-~G~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
....+..+|..||. ++ +|.|+..||+.++.. ++..++.+++..++..+|.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45679999999997 87 799999999999986 4678899999999999999999999999999988754
No 47
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.05 E-value=1.3e-09 Score=66.50 Aligned_cols=61 Identities=23% Similarity=0.467 Sum_probs=56.3
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 60 KAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 60 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
+.+|..+|.+++|.|+..++..++...+. +.+.+..++..++.+++|.|+|++|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999998864 88899999999999999999999999998765
No 48
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.02 E-value=2.3e-09 Score=69.13 Aligned_cols=70 Identities=24% Similarity=0.467 Sum_probs=61.5
Q ss_pred chhHHHHHHHHHhhcC--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 53 DDSLRNCKAIFEKFDE--DSNGTIDHEELKKCFHK-LEIK----FTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~--~~~G~i~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
+..++.++.+|..+|. +++|.|+..+|..++.. ++.. ++.+.+..++..+|.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4567889999999999 89999999999999976 4433 458999999999999999999999999998764
No 49
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.01 E-value=2.5e-09 Score=63.76 Aligned_cols=61 Identities=34% Similarity=0.546 Sum_probs=57.5
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHH
Q 027591 142 LVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAF 202 (221)
Q Consensus 142 ~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~ 202 (221)
+..+|..+|.+++|.|+.+++..++...+...+...+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999998865
No 50
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.00 E-value=2.9e-09 Score=71.71 Aligned_cols=64 Identities=25% Similarity=0.328 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 138 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 138 ~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
....+..+|..+|.|++|+||.+||..++ ....+..+..+|..+|.|++|.||+++|..++.+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~~ 109 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIKE 109 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhCh
Confidence 34788999999999999999999999876 23557788999999999999999999999998443
No 51
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.98 E-value=2.7e-09 Score=62.13 Aligned_cols=52 Identities=37% Similarity=0.659 Sum_probs=48.8
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 027591 70 SNGTIDHEELKKCFHKLEIK-FTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (221)
Q Consensus 70 ~~G~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 121 (221)
++|.|+.++|+.++..+|.. ++++++..+|..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999998863
No 52
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.98 E-value=3.3e-09 Score=68.25 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhCCC--CCCcccHHHHHHHHH-hcCCCCc----HHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCC
Q 027591 138 TFETLVDAFVFLDKN--KDGYVSRSEMTQAVT-ESGEGST----GRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCGVG 209 (221)
Q Consensus 138 ~~~~~~~~f~~~D~~--~~G~Is~~el~~~l~-~~g~~~~----~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~~~ 209 (221)
....+..+|+.|+.. ++|+|+.+||+.++. ..|..++ +..+..++..+|.+++|.|+|++|+.++......+
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~~ 84 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVAA 84 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHh
Confidence 346788899999866 479999999999997 4566666 89999999999999999999999999998765433
No 53
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.98 E-value=5.5e-09 Score=67.18 Aligned_cols=70 Identities=17% Similarity=0.342 Sum_probs=59.9
Q ss_pred chhHHHHHHHHHh-hcCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 53 DDSLRNCKAIFEK-FDEDSNG-TIDHEELKKCFHKL-----EIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 53 ~~~~~~~~~~F~~-~D~~~~G-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
+..+..+..+|.. +|.+++| +|+..||+.++... +....+.++..++..+|.+++|.|+|+||+.++..+
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567789999999 6677875 99999999999875 234567899999999999999999999999988765
No 54
>PF14658 EF-hand_9: EF-hand domain
Probab=98.97 E-value=3.1e-09 Score=63.05 Aligned_cols=63 Identities=25% Similarity=0.367 Sum_probs=59.0
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCC-CCcHHHHHHHHhhcCCCCC-CccchHHHHHHHHHHh
Q 027591 144 DAFVFLDKNKDGYVSRSEMTQAVTESGE-GSTGRIAIKRFEEMDWDKN-GMVNFKEFLFAFTRWC 206 (221)
Q Consensus 144 ~~f~~~D~~~~G~Is~~el~~~l~~~g~-~~~~~~~~~l~~~~d~~~~-g~Is~~eF~~~~~~~~ 206 (221)
.+|..||.++.|.|...++..+|+.++. ..++.+++.+...+|+++. |.|+++.|+..|+.|.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~wi 66 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDWI 66 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHhC
Confidence 3799999999999999999999999987 8899999999999999988 9999999999998863
No 55
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.93 E-value=4.1e-09 Score=84.06 Aligned_cols=158 Identities=22% Similarity=0.273 Sum_probs=111.3
Q ss_pred CCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc------CCC--------CC-HHHHH--HH
Q 027591 36 GTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKL------EIK--------FT-EEEIN--DL 98 (221)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~------~~~--------~~-~~~~~--~l 98 (221)
..+...|.+.+-.++.+......++-+|+.||.|++|-|+.+||..+..-. +.. .+ .-.+. .+
T Consensus 212 ~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~ 291 (489)
T KOG2643|consen 212 ESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALL 291 (489)
T ss_pred CCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHH
Confidence 455566666544444445566778999999999999999999999877422 110 00 00111 22
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCCCcH--
Q 027591 99 FEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGSTG-- 175 (221)
Q Consensus 99 ~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~~~~~-- 175 (221)
..-+..++++.+++++|..++..+. .+.++.-|..+|+..+|.|+..+|..++-.. +.+...
T Consensus 292 ~yFFG~rg~~kLs~deF~~F~e~Lq---------------~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~ 356 (489)
T KOG2643|consen 292 TYFFGKRGNGKLSIDEFLKFQENLQ---------------EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKH 356 (489)
T ss_pred HHhhccCCCccccHHHHHHHHHHHH---------------HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHH
Confidence 3346889999999999999998873 2667777999999999999999999988776 333322
Q ss_pred HHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCC
Q 027591 176 RIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCGVG 209 (221)
Q Consensus 176 ~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~~~ 209 (221)
..+..+-+.++.. +-.||++||..++.-..+..
T Consensus 357 ~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~ 389 (489)
T KOG2643|consen 357 KYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLN 389 (489)
T ss_pred HHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhh
Confidence 2455666666644 55699999999886654443
No 56
>PLN02964 phosphatidylserine decarboxylase
Probab=98.91 E-value=1.7e-08 Score=86.26 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=90.6
Q ss_pred CcccHHHHHHHHHH--cC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHh
Q 027591 72 GTIDHEELKKCFHK--LE-IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVF 148 (221)
Q Consensus 72 G~i~~~e~~~~l~~--~~-~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 148 (221)
..++.+++...... .. .....+++.+.|..+|.+++|.+ +..++..+... .+.. .....+..+|..
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~--~pte-----~e~~fi~~mf~~ 187 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIE--DPVE-----TERSFARRILAI 187 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCC--CCCH-----HHHHHHHHHHHH
Confidence 35666666654432 11 11233567888999999999987 33333332210 1111 011347899999
Q ss_pred hCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 149 LDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 149 ~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
+|.+++|.|+.+||..++..++...+++++..+|+.+|.+++|.|++++|..++..+
T Consensus 188 ~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 188 VDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred hCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 999999999999999999998888899999999999999999999999999999885
No 57
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.91 E-value=1.4e-08 Score=81.69 Aligned_cols=128 Identities=19% Similarity=0.241 Sum_probs=101.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH----hhCCCCCCcccHHHHHHHHHHhhhccCChhHHHH
Q 027591 59 CKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFE----ACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRA 134 (221)
Q Consensus 59 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~----~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 134 (221)
+...|-.+|.|++|.|+.+++...-. ..++.--++++|. ..-.-.+|+++|++|+.++.......
T Consensus 280 iy~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~-------- 348 (493)
T KOG2562|consen 280 IYCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKD-------- 348 (493)
T ss_pred HHHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCC--------
Confidence 34447778999999999999988653 3356777889998 23345678999999999999875432
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-------C--CCCcHHHHHHHHhhcCCCCCCccchHHHHH
Q 027591 135 LEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-------G--EGSTGRIAIKRFEEMDWDKNGMVNFKEFLF 200 (221)
Q Consensus 135 ~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-------g--~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~ 200 (221)
....+...|+.+|.+++|.|+..|++-+.... | ...-++.+++++..+.+...++||+++|+.
T Consensus 349 ---t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 349 ---TPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred ---CccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 22667889999999999999999998877654 2 223467888999999989999999999987
No 58
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.91 E-value=1.2e-08 Score=60.73 Aligned_cols=61 Identities=34% Similarity=0.628 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 027591 59 CKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLL 119 (221)
Q Consensus 59 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 119 (221)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998765
No 59
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.89 E-value=3e-08 Score=78.69 Aligned_cols=106 Identities=19% Similarity=0.307 Sum_probs=90.6
Q ss_pred cccccCCcccHHHHHHHHHHHhhhhCCCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCC
Q 027591 10 SATSTWMPETKLEAKMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIK 89 (221)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~ 89 (221)
.+.|+ -+.....+.++..++.+..++.++.+|.+.+. ....++.++|+.+|.+++|.|...|+...+..++..
T Consensus 42 ~l~~~-~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~ 114 (463)
T KOG0036|consen 42 KLDHP-KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD------NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQ 114 (463)
T ss_pred hcCCC-CCchHHHHHHHHhcccCcCCcccHHHHHHHHH------HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCc
Confidence 34555 45556677788888887788999999999876 367889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 90 FTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 90 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
+++++++.++...|.++++.|+++||...+...
T Consensus 115 l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 115 LSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred cCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 999999999999999999999999999988753
No 60
>PF14658 EF-hand_9: EF-hand domain
Probab=98.87 E-value=1.3e-08 Score=60.49 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=57.6
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHHH
Q 027591 61 AIFEKFDEDSNGTIDHEELKKCFHKLEI-KFTEEEINDLFEACDINKD-MGMKFNEFIVLLCL 121 (221)
Q Consensus 61 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-~~i~~~ef~~~~~~ 121 (221)
.+|..||.++.|.|...++..+|+.++. .+.+.+++.+.+.+|+++. |.|+++.|+..+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999988 8999999999999999998 99999999999874
No 61
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.83 E-value=4.8e-08 Score=87.93 Aligned_cols=133 Identities=23% Similarity=0.447 Sum_probs=104.9
Q ss_pred chhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCC-------CHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhc
Q 027591 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKF-------TEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLL 125 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~-------~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~ 125 (221)
.....++..+|+.||.+++|.++..+|+.+|+++|+++ ++.+++.++...|++.+|.|+..+|+.++..-..
T Consensus 2249 Ee~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ET- 2327 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKET- 2327 (2399)
T ss_pred HHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccc-
Confidence 45677899999999999999999999999999999776 3447999999999999999999999999986422
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCC--------CCCccchHH
Q 027591 126 KDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWD--------KNGMVNFKE 197 (221)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~--------~~g~Is~~e 197 (221)
+++. ....+..+|+.+|. +..||+.+++.+. +|++.+.-.+..+.+- ..+.+.|.+
T Consensus 2328 -------eNI~-s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~d 2391 (2399)
T KOG0040|consen 2328 -------ENIL-SSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKD 2391 (2399)
T ss_pred -------cccc-chHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHH
Confidence 1111 12588999999998 8889999998664 6677777666665332 234688888
Q ss_pred HHHHH
Q 027591 198 FLFAF 202 (221)
Q Consensus 198 F~~~~ 202 (221)
|...+
T Consensus 2392 fv~sl 2396 (2399)
T KOG0040|consen 2392 FVNSL 2396 (2399)
T ss_pred HHHHH
Confidence 87654
No 62
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.79 E-value=4e-08 Score=66.17 Aligned_cols=64 Identities=23% Similarity=0.435 Sum_probs=57.0
Q ss_pred chhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 027591 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLC 120 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 120 (221)
+.....+.-+|..+|.|++|.|+..|+..+. +.+.+..+..++..+|.|++|.|+++||+..+.
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3466789999999999999999999999876 456678889999999999999999999999983
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.78 E-value=4.5e-08 Score=62.96 Aligned_cols=70 Identities=26% Similarity=0.475 Sum_probs=59.7
Q ss_pred chhHHHHHHHHHhhcCC--CCCcccHHHHHHHHHH-cCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 53 DDSLRNCKAIFEKFDED--SNGTIDHEELKKCFHK-LEIKFT----EEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~-~~~~~~----~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
+..+..+...|..|+.. .+|.|+..||+.++.. ++..++ +.++..++..+|.+++|.|+|++|+.++..+
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34567788999999966 4899999999999974 554455 8999999999999999999999999988765
No 64
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.69 E-value=1.4e-07 Score=67.89 Aligned_cols=68 Identities=24% Similarity=0.407 Sum_probs=62.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhc
Q 027591 140 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 140 ~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~ 207 (221)
..+..+|+.||.+.||+|+.-||+.+|..+|.+-|---+..++..+|.|.+|+||+-+|+-.+....+
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 55678999999999999999999999999998888888899999999999999999999999888654
No 65
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.69 E-value=2.4e-07 Score=68.85 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=95.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhH-
Q 027591 56 LRNCKAIFEKFDEDSNGTIDHEELKKCFHKLE---IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTA- 131 (221)
Q Consensus 56 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~- 131 (221)
.+.+..+|.+.|.+.+|+||..|++..+..-. +.-+.++.+..|+..|++++|.|+|+||..-+.........+..
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevad 179 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVAD 179 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHH
Confidence 46788899999999999999999888765421 22344455667788899999999999988776654332110000
Q ss_pred -------------HHH-----------------------------------HHHHHHHHHHHHHhhCCCCCCcccHHHHH
Q 027591 132 -------------LRA-----------------------------------LEATFETLVDAFVFLDKNKDGYVSRSEMT 163 (221)
Q Consensus 132 -------------~~~-----------------------------------~~~~~~~~~~~f~~~D~~~~G~Is~~el~ 163 (221)
.+. -......+..+...+|++|+..+|..+|.
T Consensus 180 airlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFi 259 (362)
T KOG4251|consen 180 AIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFI 259 (362)
T ss_pred HhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhh
Confidence 000 00012234566677888888888888886
Q ss_pred HHHHhc-----CCCCcH----HHHHHHHhhcCCCCCCccchHHHHHHH
Q 027591 164 QAVTES-----GEGSTG----RIAIKRFEEMDWDKNGMVNFKEFLFAF 202 (221)
Q Consensus 164 ~~l~~~-----g~~~~~----~~~~~l~~~~d~~~~g~Is~~eF~~~~ 202 (221)
...-.. |..+.+ +....+-+.+|.|.+|.+|+++...++
T Consensus 260 slpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 260 SLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred cCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence 643221 444544 344455556788888888888877765
No 66
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.66 E-value=4.3e-07 Score=57.93 Aligned_cols=68 Identities=15% Similarity=0.303 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-----CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHh
Q 027591 138 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 138 ~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-----g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~ 206 (221)
....+..+|+.|- .+.+.|+..||+.++... +..-.+..+..+++.+|.|+||.|+|+||..++..+.
T Consensus 6 ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 6 SMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3467788999998 446799999999999765 4455788999999999999999999999999987753
No 67
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.66 E-value=8e-08 Score=74.04 Aligned_cols=156 Identities=10% Similarity=0.026 Sum_probs=116.7
Q ss_pred hCCCCHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccH
Q 027591 34 AEGTALKSFNSIILKFPKI-DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKF 112 (221)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~ 112 (221)
.-..++.+|.+....+... ..-+..+...-...-..+.+.|...+|..-++ ...+ +.+..+|..+|.+++|.++|
T Consensus 203 pm~a~l~eF~~~~r~lkL~~~gl~k~ld~y~~var~~kg~~igi~efa~~l~---vpvs-d~l~~~f~LFde~~tg~~D~ 278 (412)
T KOG4666|consen 203 PMSASLPEFVAKRRVLKLPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNLR---VPVS-DKLAPTFMLFDEGTTGNGDY 278 (412)
T ss_pred ccccchHHHHHHHhccCCChHHHHHHHhhHHHHHHhccCCCcceeEeeeeee---cchh-hhhhhhhheecCCCCCcccH
Confidence 4455677777766555332 33344454444444445677777777765443 2233 56788999999999999999
Q ss_pred HHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCCCcHHHHHHHHhhcCCCCCC
Q 027591 113 NEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGSTGRIAIKRFEEMDWDKNG 191 (221)
Q Consensus 113 ~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g 191 (221)
.+.+..+..++..... ...+..+|+.|+.+-||++...+|..+|+.. | +..-.+--+|..++...+|
T Consensus 279 re~v~~lavlc~p~~t----------~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~lf~~i~q~d~~ 346 (412)
T KOG4666|consen 279 RETVKTLAVLCGPPVT----------PVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPVLFPSIEQKDDP 346 (412)
T ss_pred HHHhhhheeeeCCCCc----------HHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccccchhhhcccCc
Confidence 9999999988875432 3778899999999999999999999998875 4 5555677899999999999
Q ss_pred ccchHHHHHHHHHH
Q 027591 192 MVNFKEFLFAFTRW 205 (221)
Q Consensus 192 ~Is~~eF~~~~~~~ 205 (221)
+|+|.+|.+++...
T Consensus 347 ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 347 KIYASNFRKFAATE 360 (412)
T ss_pred ceeHHHHHHHHHhC
Confidence 99999999998764
No 68
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.59 E-value=6.7e-07 Score=72.74 Aligned_cols=145 Identities=18% Similarity=0.216 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCC------CCCHHHHHHHHHhhCCCCCCc
Q 027591 36 GTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEI------KFTEEEINDLFEACDINKDMG 109 (221)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~------~~~~~~~~~l~~~~d~~~~~~ 109 (221)
-+++.+|..+-..+ =.+......+|..||+.++|.+|.+++..++.+..+ ++..+.+...| .......
T Consensus 90 lisf~eF~afe~~l---C~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~ 163 (694)
T KOG0751|consen 90 LISFQEFRAFESVL---CAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRH 163 (694)
T ss_pred cccHHHHHHHHhhc---cCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHh
Confidence 34455555443322 223566888999999999999999999999887643 33444555544 3344566
Q ss_pred ccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhc-CCC
Q 027591 110 MKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEM-DWD 188 (221)
Q Consensus 110 i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~-d~~ 188 (221)
++|.+|.+++..+.. +...++|+..|+.++|+||.-+++.++-....++....++..+-.+ ..+
T Consensus 164 ~ny~~f~Q~lh~~~~---------------E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~ 228 (694)
T KOG0751|consen 164 LNYAEFTQFLHEFQL---------------EHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGN 228 (694)
T ss_pred ccHHHHHHHHHHHHH---------------HHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCC
Confidence 999999999987643 6688999999999999999999999998885555555555555544 344
Q ss_pred CCCccchHHHHHH
Q 027591 189 KNGMVNFKEFLFA 201 (221)
Q Consensus 189 ~~g~Is~~eF~~~ 201 (221)
...++|+..|..+
T Consensus 229 ~~H~vSf~yf~af 241 (694)
T KOG0751|consen 229 DSHQVSFSYFNAF 241 (694)
T ss_pred CccccchHHHHHH
Confidence 4456777666543
No 69
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.56 E-value=1.2e-07 Score=47.27 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=21.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHh
Q 027591 142 LVDAFVFLDKNKDGYVSRSEMTQAVTE 168 (221)
Q Consensus 142 ~~~~f~~~D~~~~G~Is~~el~~~l~~ 168 (221)
+..+|+.||+|++|+|+.+||..++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567888888888888888888888765
No 70
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.56 E-value=1.7e-06 Score=62.44 Aligned_cols=107 Identities=23% Similarity=0.347 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHH
Q 027591 54 DSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALR 133 (221)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 133 (221)
.++..+..+|..||.+.+|+|++.|++.+|.++|-.-+.--++.++...|.|.+|+|+|.+|+-++.......-..
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~---- 171 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQE---- 171 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcccccc----
Confidence 4789999999999999999999999999999999888888899999999999999999999998887654321000
Q ss_pred HHHHHHHHHHHH-HHhhCCCCCCcccHHHHHHHHHh
Q 027591 134 ALEATFETLVDA-FVFLDKNKDGYVSRSEMTQAVTE 168 (221)
Q Consensus 134 ~~~~~~~~~~~~-f~~~D~~~~G~Is~~el~~~l~~ 168 (221)
.......+ ....|...-|..-...|..+=..
T Consensus 172 ----ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~ 203 (244)
T KOG0041|consen 172 ----DSGLLRLARLSEVDVSKEGVSGAKNFFEAKIE 203 (244)
T ss_pred ----chHHHHHHHhcccchhhhhhhhHHHHHHHHHH
Confidence 00111112 34477778887777777665433
No 71
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.55 E-value=6.3e-07 Score=60.81 Aligned_cols=85 Identities=21% Similarity=0.361 Sum_probs=70.4
Q ss_pred CCCCHHHHHHHHHhCC--CCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccH
Q 027591 35 EGTALKSFNSIILKFP--KIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKF 112 (221)
Q Consensus 35 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~ 112 (221)
.++.|..|.-++.... ......+.+-+-++.||++++|.|...||+.+|..+|-.++++++..++... .|.+|.|+|
T Consensus 64 ~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~Y 142 (152)
T KOG0030|consen 64 KRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINY 142 (152)
T ss_pred hhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcH
Confidence 4566777776655542 3344567888889999999999999999999999999999999999998776 577899999
Q ss_pred HHHHHHHH
Q 027591 113 NEFIVLLC 120 (221)
Q Consensus 113 ~ef~~~~~ 120 (221)
+.|+..+.
T Consensus 143 E~fVk~i~ 150 (152)
T KOG0030|consen 143 EAFVKHIM 150 (152)
T ss_pred HHHHHHHh
Confidence 99998764
No 72
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.53 E-value=4.2e-07 Score=62.09 Aligned_cols=105 Identities=20% Similarity=0.384 Sum_probs=86.0
Q ss_pred cccHHHHHHHHHHHhhhhCCCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHH
Q 027591 17 PETKLEAKMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLE-IKFTEEEI 95 (221)
Q Consensus 17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~ 95 (221)
...+..+++.+.+...+.+..++..|..+++.+.-.....-.+.-+|+.||-|+++.|...++...+.++. -.++++++
T Consensus 68 kenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv 147 (189)
T KOG0038|consen 68 KENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEV 147 (189)
T ss_pred hcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHH
Confidence 44566677777777777889999999999888866655666778899999999999999999999999875 34677664
Q ss_pred ----HHHHHhhCCCCCCcccHHHHHHHHHH
Q 027591 96 ----NDLFEACDINKDMGMKFNEFIVLLCL 121 (221)
Q Consensus 96 ----~~l~~~~d~~~~~~i~~~ef~~~~~~ 121 (221)
..++...|.+++|++++.+|-.++..
T Consensus 148 ~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 148 ELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 55667789999999999999998864
No 73
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.48 E-value=2.2e-06 Score=54.70 Aligned_cols=69 Identities=17% Similarity=0.339 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-c----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q 027591 54 DSLRNCKAIFEKFDEDSNGTIDHEELKKCFHK-L----EIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (221)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 123 (221)
..+..+-.+|..|.. +.+.++..||+.++.+ + .....+..+..++..+|.|+||.|+|.||+.++..+.
T Consensus 5 ~ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 5 HSMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456678889999985 4679999999999965 3 2334678899999999999999999999999998763
No 74
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.42 E-value=4.7e-07 Score=45.14 Aligned_cols=27 Identities=44% Similarity=0.779 Sum_probs=20.5
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH
Q 027591 59 CKAIFEKFDEDSNGTIDHEELKKCFHK 85 (221)
Q Consensus 59 ~~~~F~~~D~~~~G~i~~~e~~~~l~~ 85 (221)
++++|+.+|.|++|.|+.+||..++.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567777788888888888887777764
No 75
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.41 E-value=4.7e-07 Score=46.08 Aligned_cols=30 Identities=30% Similarity=0.593 Sum_probs=25.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-hcC
Q 027591 141 TLVDAFVFLDKNKDGYVSRSEMTQAVT-ESG 170 (221)
Q Consensus 141 ~~~~~f~~~D~~~~G~Is~~el~~~l~-~~g 170 (221)
+++.+|+.||.+++|+|+.+||..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367899999999999999999999998 554
No 76
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.35 E-value=1.3e-05 Score=68.76 Aligned_cols=137 Identities=18% Similarity=0.271 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHH
Q 027591 54 DSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALR 133 (221)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 133 (221)
....++..+|+..|.+++|.++..+...++..++..+....+..+|...+..+++.+..++|+.+.......
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r-------- 204 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR-------- 204 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--------
Confidence 456788999999999999999999999999999999999999999999999999999999999988876543
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc--CCCCcHHHHHHHHhhcCC----CCCCccchHHHHHHHHHH
Q 027591 134 ALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES--GEGSTGRIAIKRFEEMDW----DKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 134 ~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~--g~~~~~~~~~~l~~~~d~----~~~g~Is~~eF~~~~~~~ 205 (221)
..+...|..+-.+ .++++..++..++... ..+.+.+.+..+++.+.. ...+.++++.|.+++.+-
T Consensus 205 ------pev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 205 ------PEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred ------chHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 3667778777544 8999999999999988 346788899999988753 245679999999998763
No 77
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.29 E-value=2.9e-05 Score=63.51 Aligned_cols=101 Identities=19% Similarity=0.310 Sum_probs=76.8
Q ss_pred HHHHHHHHHh---hcCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChh
Q 027591 56 LRNCKAIFEK---FDEDSNGTIDHEELKKCFHKL-EI-KFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPT 130 (221)
Q Consensus 56 ~~~~~~~F~~---~D~~~~G~i~~~e~~~~l~~~-~~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~ 130 (221)
..+++.+|-. .+.++.-.++.++|....-.+ +. ...++.+..+-...|...||-|+|+||+.+=..++...
T Consensus 32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pD---- 107 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPD---- 107 (694)
T ss_pred hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCch----
Confidence 3455555544 467778889999988755443 33 34555566666677888999999999999887776542
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 027591 131 ALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES 169 (221)
Q Consensus 131 ~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~ 169 (221)
.....+|..||+.++|.+|.+++..++...
T Consensus 108 ---------al~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 108 ---------ALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred ---------HHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 567789999999999999999999999876
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.28 E-value=6.2e-06 Score=54.42 Aligned_cols=67 Identities=21% Similarity=0.510 Sum_probs=59.4
Q ss_pred chhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
+.+...+..+|..+++ .+|.|+..+.+.++...+ ++.+.+..+|...|.+++|.++++||+..+...
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4577889999999986 589999999999998765 788999999999999999999999999998865
No 79
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.28 E-value=3e-05 Score=62.93 Aligned_cols=176 Identities=13% Similarity=0.162 Sum_probs=114.7
Q ss_pred HHHHhhhhCCCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCC---------------
Q 027591 27 EAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFT--------------- 91 (221)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~--------------- 91 (221)
.++.....+......|...+.... --....+.+++..++..+.|++...+|+..|..+-...+
T Consensus 146 ~k~~~d~~g~it~~~Fi~~~~~~~--~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~ 223 (493)
T KOG2562|consen 146 RKIDGDDTGHITRDKFINYWMRGL--MLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYA 223 (493)
T ss_pred hhhccCcCCceeHHHHHHHHHhhh--hHHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHH
Confidence 333334455666666666655322 224456777888999999999999999998877532221
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHh--hhccCChhHHHHHHH-HHHHHHHH---HHhhCCCCCCcccHHHHHHH
Q 027591 92 EEEINDLFEACDINKDMGMKFNEFIVLLCLV--YLLKDDPTALRALEA-TFETLVDA---FVFLDKNKDGYVSRSEMTQA 165 (221)
Q Consensus 92 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~---f~~~D~~~~G~Is~~el~~~ 165 (221)
.-.+.++|-.++..++|+|+..+....-... .........++...+ ..+....+ |-.+|+|++|.|+.++|...
T Consensus 224 ~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry 303 (493)
T KOG2562|consen 224 ETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRY 303 (493)
T ss_pred HHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHH
Confidence 1226788888899999999998866543321 111111111111111 12333344 66789999999999999887
Q ss_pred HHhcCCCCcHHHHHHHHhhcC----CCCCCccchHHHHHHHHHHhc
Q 027591 166 VTESGEGSTGRIAIKRFEEMD----WDKNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 166 l~~~g~~~~~~~~~~l~~~~d----~~~~g~Is~~eF~~~~~~~~~ 207 (221)
.. ..++...++.+|..+. ...+|+++|.+|+.++...-+
T Consensus 304 ~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~ 346 (493)
T KOG2562|consen 304 GD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED 346 (493)
T ss_pred hc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc
Confidence 64 3467888889998433 356899999999999876543
No 80
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.24 E-value=5.5e-06 Score=46.43 Aligned_cols=50 Identities=22% Similarity=0.400 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 73 TIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 73 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
.+++.|++.+|+.+++.+++..+..+|..+|.+++|.+.-+||+.++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 37889999999999999999999999999999999999999999988753
No 81
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.24 E-value=2e-06 Score=43.70 Aligned_cols=30 Identities=37% Similarity=0.656 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH-HcC
Q 027591 58 NCKAIFEKFDEDSNGTIDHEELKKCFH-KLE 87 (221)
Q Consensus 58 ~~~~~F~~~D~~~~G~i~~~e~~~~l~-~~~ 87 (221)
+++.+|+.+|.+++|.|+..||..++. ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 554
No 82
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.17 E-value=5.7e-06 Score=67.37 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHh
Q 027591 138 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 138 ~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~ 206 (221)
....++.+|+.+|.+++|+|+.+||.. +..+|..+|.|++|.|++++|...+....
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 456788999999999999999999942 57899999999999999999999987643
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.08 E-value=1.9e-05 Score=44.33 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 156 YVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 156 ~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
.++..|++.+|+.+++.+++..+..+|+.+|++++|.+.-+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36889999999999999999999999999999999999999999988653
No 84
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.07 E-value=6.4e-06 Score=39.50 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=18.9
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHH
Q 027591 143 VDAFVFLDKNKDGYVSRSEMTQAV 166 (221)
Q Consensus 143 ~~~f~~~D~~~~G~Is~~el~~~l 166 (221)
+.+|+.+|.|++|.||.+||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 457888888888888888887753
No 85
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.02 E-value=4.5e-05 Score=62.22 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=63.8
Q ss_pred HHHHHHHHhhhhCCCCHHHHHH-HHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 027591 23 AKMVEAMQRRAAEGTALKSFNS-IILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEA 101 (221)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 101 (221)
.++-+.++.+..+...+..+.+ .+............+..+|+.+|.+++|.|+..||.. +..+|..
T Consensus 299 ekl~egi~~F~~d~~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~ 365 (391)
T PRK12309 299 EKLDEGIKGFSKALETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDA 365 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHH
Confidence 3444455555444444444333 2222344455677899999999999999999999942 5778999
Q ss_pred hCCCCCCcccHHHHHHHHHHhh
Q 027591 102 CDINKDMGMKFNEFIVLLCLVY 123 (221)
Q Consensus 102 ~d~~~~~~i~~~ef~~~~~~~~ 123 (221)
+|.|++|.|+++||...+....
T Consensus 366 ~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 366 LDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hCCCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998653
No 86
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.02 E-value=3.6e-05 Score=50.83 Aligned_cols=62 Identities=24% Similarity=0.393 Sum_probs=55.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 140 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 140 ~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
.....+|...|. ++|+|+.++.+.++...| ++.+.+..+....|.+.+|.++.+||+-+|.-
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 778899999985 689999999999999887 99999999999999999999999999987754
No 87
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.00 E-value=2.9e-05 Score=62.67 Aligned_cols=67 Identities=30% Similarity=0.509 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 56 LRNCKAIFEKFDEDSNGTIDHEELKKCFHKL----EIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 56 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
...+..+|+.+|.|++|.|+.+||+.+..-+ ....+...+..+...+|.|+||.|++.||+..+..+
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 4567889999999999999999999976544 466789999999999999999999999999988765
No 88
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.91 E-value=1.7e-05 Score=37.96 Aligned_cols=24 Identities=38% Similarity=0.732 Sum_probs=18.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHH
Q 027591 59 CKAIFEKFDEDSNGTIDHEELKKC 82 (221)
Q Consensus 59 ~~~~F~~~D~~~~G~i~~~e~~~~ 82 (221)
++.+|+.+|.|++|.|+..||..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 356788888888888888888765
No 89
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.00021 Score=61.56 Aligned_cols=63 Identities=25% Similarity=0.351 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q 027591 139 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 203 (221)
Q Consensus 139 ~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~ 203 (221)
.-+.+.+|..+|+...|+||...-+.+|...+ ++...+..+...-|.|+||+++-++|+-.|-
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 34678999999999999999999999998877 8888899999999999999999999987663
No 90
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.73 E-value=0.00046 Score=58.07 Aligned_cols=146 Identities=20% Similarity=0.318 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhCC---CC--CCcccHHHHHHHHHHhhhccCC
Q 027591 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHK-LEIKFTEEEINDLFEACDI---NK--DMGMKFNEFIVLLCLVYLLKDD 128 (221)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~---~~--~~~i~~~ef~~~~~~~~~~~~~ 128 (221)
....+.++|...|.|.+|.++-.|+..+-.. ++..+...++..+-...+. +| .+.++..-|+.+...+....++
T Consensus 193 ~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~ 272 (625)
T KOG1707|consen 193 CVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRH 272 (625)
T ss_pred HHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccc
Confidence 4678999999999999999999999998766 6677776666555444322 11 2346666676665554433333
Q ss_pred hhHHHH-------------------------------HHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC-CCCcHH
Q 027591 129 PTALRA-------------------------------LEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESG-EGSTGR 176 (221)
Q Consensus 129 ~~~~~~-------------------------------~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g-~~~~~~ 176 (221)
+...-. -....+.+..+|..||.|+||-++..|+..++..++ .+.+..
T Consensus 273 EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~ 352 (625)
T KOG1707|consen 273 ETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSS 352 (625)
T ss_pred cchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCC
Confidence 222111 222357788999999999999999999999999883 221110
Q ss_pred HHHHHHhhcCCCCCCccchHHHHHHHH
Q 027591 177 IAIKRFEEMDWDKNGMVNFKEFLFAFT 203 (221)
Q Consensus 177 ~~~~l~~~~d~~~~g~Is~~eF~~~~~ 203 (221)
-. -...-.+..|.++|+.|+..++
T Consensus 353 ~~---~~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 353 PY---KDSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred cc---cccceecccceeehhhHHHHHH
Confidence 00 0011123679999999988764
No 91
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.70 E-value=1.4e-05 Score=53.67 Aligned_cols=61 Identities=26% Similarity=0.312 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHH
Q 027591 139 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFA 201 (221)
Q Consensus 139 ~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~ 201 (221)
...+...|..+|.|++|.|+..|+..+...+ ...+..+..++...|.|+||.||+.|+..+
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 3677888999999999999999999876644 355567899999999999999999998753
No 92
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.63 E-value=0.00019 Score=65.89 Aligned_cols=68 Identities=13% Similarity=0.260 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCc--HH-----HHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 138 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGST--GR-----IAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 138 ~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~--~~-----~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
....+..+|++||++++|.++..+|+.+|++.|..++ ++ .+..++..+|++.+|.|+.++|+.+|.+.
T Consensus 2251 ~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2251 QLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 3456778999999999999999999999999987662 33 79999999999999999999999999875
No 93
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.52 E-value=0.00022 Score=45.21 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=54.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhc-CC-CCcHHHHHHHHhhcCCC----CCCccchHHHHHHHHHHhc
Q 027591 142 LVDAFVFLDKNKDGYVSRSEMTQAVTES-GE-GSTGRIAIKRFEEMDWD----KNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 142 ~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~-~~~~~~~~~l~~~~d~~----~~g~Is~~eF~~~~~~~~~ 207 (221)
+..+|..|-. +.+.||.++|..+|... +. .++.+.+..++..+.++ ..+.+|+++|..+|.+-.+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N 72 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDEN 72 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence 5688999965 78999999999999877 44 57899999999998654 4799999999999987543
No 94
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.43 E-value=7.8e-05 Score=50.13 Aligned_cols=62 Identities=27% Similarity=0.441 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 027591 54 DSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIV 117 (221)
Q Consensus 54 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 117 (221)
.....+.-.|..+|.+++|.|+..|+..+...+ .+.+.=+..++..+|.|+++.|+..|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 456677788999999999999999999886544 56666678899999999999999999875
No 95
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.41 E-value=0.00087 Score=55.54 Aligned_cols=71 Identities=28% Similarity=0.521 Sum_probs=62.0
Q ss_pred chhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhh
Q 027591 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIK---FTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYL 124 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~---~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~ 124 (221)
..+...+...|...| +++|+++..++..++.+.+.. ...++++.++...+.+.+|.|+|++|+..+..+..
T Consensus 15 q~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 457788999999999 999999999999999987643 35788999999999999999999999998876643
No 96
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.21 E-value=0.00043 Score=51.88 Aligned_cols=70 Identities=26% Similarity=0.325 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCC--CcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhc
Q 027591 138 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEG--STGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 138 ~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~~--~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~ 207 (221)
....+..+|+..|.+-+|+||..|+++.+..- ..+ -+-.+-...|+.+|++++|.|++++|.-.+...-+
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskg 171 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKG 171 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcC
Confidence 45788999999999999999999999977653 222 22334556788899999999999999887765443
No 97
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.17 E-value=0.0024 Score=53.04 Aligned_cols=66 Identities=26% Similarity=0.345 Sum_probs=57.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC---CcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHh
Q 027591 140 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEG---STGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 140 ~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~---~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~ 206 (221)
..+...|...| +++|+|+..++..++...+.. ...+++..++...+.+.+|+|++++|+..+....
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 56778899999 999999999999999988543 4578999999999999999999999999776643
No 98
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.00063 Score=44.83 Aligned_cols=57 Identities=23% Similarity=0.458 Sum_probs=44.0
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhc------CC---C-CcHHHHH----HHHhhcCCCCCCccchHHHHHH
Q 027591 145 AFVFLDKNKDGYVSRSEMTQAVTES------GE---G-STGRIAI----KRFEEMDWDKNGMVNFKEFLFA 201 (221)
Q Consensus 145 ~f~~~D~~~~G~Is~~el~~~l~~~------g~---~-~~~~~~~----~l~~~~d~~~~g~Is~~eF~~~ 201 (221)
-|++.|.|++|+|+.-|+..++... |. + .++.++. .+++.-|.|+||.|+|-+|++.
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4788999999999999999988765 22 2 2344544 5556668999999999999874
No 99
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.16 E-value=0.00094 Score=52.15 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=87.5
Q ss_pred CCCCCCcccccccCCcccHHHHHHHHHHHhhhhCCCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHH
Q 027591 2 GGIVGKPESATSTWMPETKLEAKMVEAMQRRAAEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKK 81 (221)
Q Consensus 2 gg~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~ 81 (221)
|+.+..+++......+-+.....+++.++....+..++.+....++.+...+.....++-+|+.|+.+.+|.++..+|..
T Consensus 241 g~~igi~efa~~l~vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ 320 (412)
T KOG4666|consen 241 GPDIGIVEFAVNLRVPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSL 320 (412)
T ss_pred CCCcceeEeeeeeecchhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHH
Confidence 44455555555444455666667777777666677777777777777777777788899999999999999999988888
Q ss_pred HHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 027591 82 CFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (221)
Q Consensus 82 ~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 121 (221)
+++.. +.+..-.+-.+|..++...+++|.+++|..+...
T Consensus 321 ilq~~-lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 321 ILQVV-LGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred HHHHh-cCcceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 87653 3344445556888888888899999999988764
No 100
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.05 E-value=0.011 Score=42.38 Aligned_cols=104 Identities=18% Similarity=0.271 Sum_probs=72.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCC-----------------------------------------------
Q 027591 58 NCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKF----------------------------------------------- 90 (221)
Q Consensus 58 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~----------------------------------------------- 90 (221)
.|++=..-+|+|++|.|..-|-...++.+|..+
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 345555568999999999999888777776542
Q ss_pred ------CHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 027591 91 ------TEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQ 164 (221)
Q Consensus 91 ------~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~ 164 (221)
.++.++.+|..++..+.+.+++.|...++..-+.. .++. .--+..-+....|.+. ++.+|.|++++++.
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~-~D~~---GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~ 162 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNA-NDPF---GWFAAFFEWGALYILA-KDKDGFLSKEDIRG 162 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcccc-CCcc---hhhhhhhHHHHHHHHH-cCcCCcEeHHHHhh
Confidence 24448899999998888899999999998875432 1111 1111122333444443 56789999999998
Q ss_pred HH
Q 027591 165 AV 166 (221)
Q Consensus 165 ~l 166 (221)
+.
T Consensus 163 vY 164 (174)
T PF05042_consen 163 VY 164 (174)
T ss_pred hc
Confidence 75
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.00 E-value=0.0011 Score=31.91 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=19.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHh
Q 027591 142 LVDAFVFLDKNKDGYVSRSEMTQAVTE 168 (221)
Q Consensus 142 ~~~~f~~~D~~~~G~Is~~el~~~l~~ 168 (221)
++.+|+.+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 356777777777777777777777654
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.90 E-value=0.0015 Score=31.44 Aligned_cols=27 Identities=41% Similarity=0.683 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH
Q 027591 59 CKAIFEKFDEDSNGTIDHEELKKCFHK 85 (221)
Q Consensus 59 ~~~~F~~~D~~~~G~i~~~e~~~~l~~ 85 (221)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456777788887888888887777654
No 103
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.55 E-value=0.0079 Score=37.96 Aligned_cols=65 Identities=17% Similarity=0.338 Sum_probs=53.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHHhh
Q 027591 58 NCKAIFEKFDEDSNGTIDHEELKKCFHKLEI--KFTEEEINDLFEACDIN----KDMGMKFNEFIVLLCLVY 123 (221)
Q Consensus 58 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~----~~~~i~~~ef~~~~~~~~ 123 (221)
.+..+|..+.. +.+.||.++|..+|..-.. ..+.+.+..++..+.++ ..+.++++.|..++..-.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36788999966 7899999999999987543 46899999999988654 368899999999997643
No 104
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.49 E-value=0.16 Score=45.30 Aligned_cols=120 Identities=15% Similarity=0.246 Sum_probs=84.7
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCC-------CCcccHHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 027591 68 EDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINK-------DMGMKFNEFIVLLCLVYLLKDDPTALRALEATFE 140 (221)
Q Consensus 68 ~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~-------~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (221)
.+..|.|-...+..++.+ .-.+..+...+..+..-. -...+++.|..++..++.. .
T Consensus 159 vn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR--------------~ 221 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR--------------P 221 (1189)
T ss_pred ccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc--------------h
Confidence 345566655555544432 222244444444332211 1236788888888887754 6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhc----------CCCCcHHHHHHHHhhcCCCC----CCccchHHHHHHHHH
Q 027591 141 TLVDAFVFLDKNKDGYVSRSEMTQAVTES----------GEGSTGRIAIKRFEEMDWDK----NGMVNFKEFLFAFTR 204 (221)
Q Consensus 141 ~~~~~f~~~D~~~~G~Is~~el~~~l~~~----------g~~~~~~~~~~l~~~~d~~~----~g~Is~~eF~~~~~~ 204 (221)
.+..+|..+..++.-++|.++|..++..- -....+..+..+++.+.++. .|+++-+.|++++..
T Consensus 222 eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 222 EIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 78899999998888999999999999865 23567899999999998765 689999999998865
No 105
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.017 Score=38.27 Aligned_cols=60 Identities=27% Similarity=0.291 Sum_probs=46.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCC----------CCCHHHHHHHH----HhhCCCCCCcccHHHHHHH
Q 027591 59 CKAIFEKFDEDSNGTIDHEELKKCFHKLEI----------KFTEEEINDLF----EACDINKDMGMKFNEFIVL 118 (221)
Q Consensus 59 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~----------~~~~~~~~~l~----~~~d~~~~~~i~~~ef~~~ 118 (221)
--..|...|-|++|.|+--|+.++++...- -+++.++..+. +.-|.|++|.|+|.||+..
T Consensus 69 qfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 69 QFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 345788999999999999999999875421 23566665554 4558899999999999864
No 106
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.21 E-value=0.12 Score=46.29 Aligned_cols=99 Identities=23% Similarity=0.165 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCH-----HHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCCh
Q 027591 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTE-----EEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDP 129 (221)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 129 (221)
....++..|+.++....|.++.++|..+|..+|.+... .++..+....+.+..|.+++.+|...+..-+...
T Consensus 745 v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l--- 821 (890)
T KOG0035|consen 745 VLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDL--- 821 (890)
T ss_pred HHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhh---
Confidence 56789999999999999999999999999999988764 3456666677777789999999999998754321
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 027591 130 TALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQ 164 (221)
Q Consensus 130 ~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~ 164 (221)
....++..+|..+-++.. +|..+||..
T Consensus 822 -------~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 822 -------DTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred -------cHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 123677788888876655 899999987
No 107
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=95.80 E-value=0.011 Score=35.80 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=39.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCC-------CCccchHHHHH
Q 027591 140 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDK-------NGMVNFKEFLF 200 (221)
Q Consensus 140 ~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~-------~g~Is~~eF~~ 200 (221)
+.+..+|+.+ .++.++||.++|++.| +++.++.++..+..-. .|.++|..|..
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l-------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSL-------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHc-------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 7789999999 7889999999999985 4445566666664322 37789988875
No 108
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.025 Score=49.38 Aligned_cols=73 Identities=12% Similarity=0.357 Sum_probs=63.1
Q ss_pred CCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q 027591 49 FPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (221)
Q Consensus 49 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 123 (221)
+.........++++|..+|+..+|++|-.+-+.+|...+ ++...+..++..-|.|+||+++.+||+-.+...-
T Consensus 187 WAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~lie 259 (1118)
T KOG1029|consen 187 WAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIE 259 (1118)
T ss_pred ccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHHHH
Confidence 455566778899999999999999999999999987654 7888899999999999999999999998877653
No 109
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=0.018 Score=47.75 Aligned_cols=83 Identities=22% Similarity=0.319 Sum_probs=67.7
Q ss_pred CCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCCh
Q 027591 50 PKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDP 129 (221)
Q Consensus 50 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 129 (221)
...+++.+.+-..|+.+-+|-+|+|+-.--++++.+. +++-.++..||...|.+.||.++..|||..+..+...++.-
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgy 301 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGY 301 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCC
Confidence 3345677788889999999999999999988888764 57778999999999999999999999999998876554443
Q ss_pred hHHHH
Q 027591 130 TALRA 134 (221)
Q Consensus 130 ~~~~~ 134 (221)
..++.
T Consensus 302 pLPe~ 306 (737)
T KOG1955|consen 302 PLPES 306 (737)
T ss_pred CCCCC
Confidence 33333
No 110
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.49 E-value=0.017 Score=45.65 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 138 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 138 ~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
....+..+|..+|.+.+|.|+..|++.+- ..-.+..+..+|...|...||.||-.|+...+.+.
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 45788899999999999999999998874 33567889999999999999999999999988654
No 111
>PLN02952 phosphoinositide phospholipase C
Probab=95.40 E-value=0.19 Score=43.66 Aligned_cols=89 Identities=12% Similarity=0.151 Sum_probs=62.9
Q ss_pred CCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CC-CCcHHHHHHHHh
Q 027591 106 KDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GE-GSTGRIAIKRFE 183 (221)
Q Consensus 106 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~-~~~~~~~~~l~~ 183 (221)
+.|.++|.+|..++..+...... ....+..+|..|-.+ .+.||.++|..+|... +. ..+.+.+..++.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~---------~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~ 82 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAE---------PPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVE 82 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCC---------ChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHH
Confidence 45799999998887766321000 126889999999644 4789999999999987 43 366777777765
Q ss_pred hc----C---CCCCCccchHHHHHHHHH
Q 027591 184 EM----D---WDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 184 ~~----d---~~~~g~Is~~eF~~~~~~ 204 (221)
.+ . ....+.++++.|..++..
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 83 EVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred HHHhhccccccccccCcCHHHHHHHHcC
Confidence 43 1 123356999999999974
No 112
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.23 E-value=0.15 Score=36.27 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=48.1
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhcC---CCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHh
Q 027591 145 AFVFLDKNKDGYVSRSEMTQAVTESG---EGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 145 ~f~~~D~~~~G~Is~~el~~~l~~~g---~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~ 206 (221)
.|..|-..+...|+...|..+|+.++ -.++...+..+|..+...+..+|+|++|+.+|..+.
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 34444455667899999999999984 358999999999998777777899999999997754
No 113
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.03 E-value=0.078 Score=42.09 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=76.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHH
Q 027591 57 RNCKAIFEKFDEDSNGTIDHEELKKCFHKLE---IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALR 133 (221)
Q Consensus 57 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 133 (221)
.+|+..|+.+-.+.++......+..+...+. +.+-...+.-||..+|.|.++.++..|...+-...
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk----------- 279 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK----------- 279 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC-----------
Confidence 4678888888777777666666666544443 23456788999999999999999999987766542
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 027591 134 ALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESG 170 (221)
Q Consensus 134 ~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g 170 (221)
.+..++..|...|...+|.|+..|+-..+...+
T Consensus 280 ----nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 280 ----NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred ----chhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 237788899999999999999999988877664
No 114
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.086 Score=43.91 Aligned_cols=65 Identities=25% Similarity=0.293 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 138 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 138 ~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
..+.+..-|+.+-.|-.|+|+..--++++.... ++-.++..+.+..|.+.||.+++.||+..|--
T Consensus 229 QReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 229 QREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 456777889999999999999999999998765 78889999999999999999999999998843
No 115
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.60 E-value=0.096 Score=44.45 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=61.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhc
Q 027591 140 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 140 ~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~ 207 (221)
...+.-|..+|.++.|+++..++..+|+..+..++.+.+..++..++.+.+|.+...+|.+++....+
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 44556799999999999999999999999988999999999999999999999999999999876543
No 116
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.57 E-value=0.17 Score=36.38 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=51.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCC-----------------------------------------------
Q 027591 141 TLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGS----------------------------------------------- 173 (221)
Q Consensus 141 ~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~----------------------------------------------- 173 (221)
.+.+-...||+|+||.|..-|-.+-++++|..+
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 344556679999999999999988888775443
Q ss_pred ------cHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhc
Q 027591 174 ------TGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 174 ------~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~ 207 (221)
.++.++++|..++....+.+|+.|...++.....
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 1778888888888777778888888888766443
No 117
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.50 E-value=0.47 Score=30.35 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhc-------CCC----CcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 140 ETLVDAFVFLDKNKDGYVSRSEMTQAVTES-------GEG----STGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 140 ~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-------g~~----~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
++++.+|+.+ .|.+|.++...|..+|+.+ |+. -.+.-+...|... .....|+.+.|++.+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 7889999999 5889999999999888775 221 2677778888887 35667999999998865
No 118
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.28 E-value=0.1 Score=44.92 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=59.0
Q ss_pred ccHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCC
Q 027591 74 IDHEELKKCFHKLE-IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKN 152 (221)
Q Consensus 74 i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 152 (221)
|....|..+++.+. ...+.-.+.++|...|.+.+|.++|.+++..+..++... ..+.+..+|+.+|..
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~-----------~~ek~~l~y~lh~~p 603 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGD-----------ALEKLKLLYKLHDPP 603 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhh-----------HHHHHHHHHhhccCC
Confidence 34444555444432 123445578999999999999999999999999887643 458899999999999
Q ss_pred CCCcccHHHH
Q 027591 153 KDGYVSRSEM 162 (221)
Q Consensus 153 ~~G~Is~~el 162 (221)
++ .++.++.
T Consensus 604 ~~-~~d~e~~ 612 (671)
T KOG4347|consen 604 AD-ELDREEV 612 (671)
T ss_pred cc-ccccccc
Confidence 99 9998888
No 119
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=0.069 Score=48.43 Aligned_cols=147 Identities=20% Similarity=0.309 Sum_probs=109.4
Q ss_pred chhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCC----
Q 027591 53 DDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDD---- 128 (221)
Q Consensus 53 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~---- 128 (221)
.++...+..+|..+.+. +|.++-...+.++..- .++-..+.+++...|.+.+|.+++.+|...+.........
T Consensus 125 ~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~~p 201 (847)
T KOG0998|consen 125 PQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNSEP 201 (847)
T ss_pred HHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhcccCC
Confidence 34556777778888775 7788888777776543 4666677778888888888888888888877765443220
Q ss_pred -----------hh-HH----------------------------------------------------------HHHHHH
Q 027591 129 -----------PT-AL----------------------------------------------------------RALEAT 138 (221)
Q Consensus 129 -----------~~-~~----------------------------------------------------------~~~~~~ 138 (221)
+. .. ......
T Consensus 202 ~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~d 281 (847)
T KOG0998|consen 202 VPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPSD 281 (847)
T ss_pred CCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChHH
Confidence 00 00 011223
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 139 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 139 ~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
...+..+|...|.+.+|.|+-.+.+..+...| ++...+..+....+..+.|.+++.+|.-.+-.
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 45666789999999999999999999998866 88899999999999999999999988776644
No 120
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.83 E-value=0.12 Score=48.36 Aligned_cols=59 Identities=20% Similarity=0.310 Sum_probs=51.4
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q 027591 144 DAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 203 (221)
Q Consensus 144 ~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~ 203 (221)
..|+.||+||.|.|+..+|..++..- .+.+..+++-++.....+.+...+|++|.+-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 45889999999999999999988763 457888999999999999999999999998764
No 121
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.77 E-value=0.14 Score=44.07 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=61.6
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHH
Q 027591 39 LKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEF 115 (221)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef 115 (221)
+..|.+++..........--+.++|+.+|.+.+|.|++.+|...|..+...-.-+.+..+|..++.+++ ..+.++.
T Consensus 537 ~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 537 YAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 444555555555555556678899999999999999999999999988777777788999999999998 8887776
No 122
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.69 E-value=0.21 Score=42.56 Aligned_cols=73 Identities=15% Similarity=0.258 Sum_probs=66.4
Q ss_pred CchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhh
Q 027591 52 IDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYL 124 (221)
Q Consensus 52 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~ 124 (221)
.+......+..|..+|.++.|.++..+...+|...+..++++.+.++....+.+-.|.+...+|..++....+
T Consensus 588 ~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 588 TPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred CHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 4567778889999999999999999999999999988999999999999999998999999999999987654
No 123
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=93.63 E-value=1 Score=39.83 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 027591 90 FTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES 169 (221)
Q Consensus 90 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~ 169 (221)
....++..+|...|.+.+|.+++.+-..++..+.... ....++..|+..+..++|.+...++..+....
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l-----------~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQL-----------SESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhh-----------hHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 3456789999999999999999999888887764321 23667788888888899999999999988776
Q ss_pred CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 170 GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 170 g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
... + ++..+|..+..+ .+.++..+++.++...
T Consensus 202 ~~r--p-ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 202 TKR--P-EVYFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred ccC--c-hHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 422 2 666666666533 6677777777766554
No 124
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=92.79 E-value=0.91 Score=32.32 Aligned_cols=63 Identities=19% Similarity=0.414 Sum_probs=47.5
Q ss_pred HHHHHhh---cCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 60 KAIFEKF---DEDSNGTIDHEELKKCFHKLEI---KFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 60 ~~~F~~~---D~~~~G~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
+.+|..| -......++...|..+++..++ .++...+..+|..+...+...|+|++|..+|..+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3444444 4556778999999999998753 4789999999999877777789999999988754
No 125
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.65 E-value=3 Score=28.62 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=34.9
Q ss_pred CcccHHHHHHHHHHhhhcc--CChhHHH-----HHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 027591 108 MGMKFNEFIVLLCLVYLLK--DDPTALR-----ALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTE 168 (221)
Q Consensus 108 ~~i~~~ef~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~ 168 (221)
..++..+....+..++... +.|.... ......-.+..++..||+.++|.|+.-.++.++..
T Consensus 58 ~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 58 SSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp SEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 3477777777766665210 0111111 11223355677889999999999999999988754
No 126
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=90.61 E-value=0.41 Score=37.62 Aligned_cols=61 Identities=20% Similarity=0.333 Sum_probs=45.1
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhc-----CCCCcHHHH-----------HHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 144 DAFVFLDKNKDGYVSRSEMTQAVTES-----GEGSTGRIA-----------IKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 144 ~~f~~~D~~~~G~Is~~el~~~l~~~-----g~~~~~~~~-----------~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
..|...|.|++|+++-.|+..++... ...-.++.. ..++..+|+|.|.-||+++|+..-..
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 56778899999999999999988654 111111111 25677789999999999999986544
No 127
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=90.59 E-value=0.22 Score=39.40 Aligned_cols=65 Identities=18% Similarity=0.143 Sum_probs=50.2
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 141 TLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 141 ~~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
.+..-|..+|+|.++.|.+.|++-+=.-+ .-.-.......+++..|.|+|-+||+.|++..+..-
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 45556999999999999999876543333 112345577889999999999999999999988653
No 128
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=90.15 E-value=1.4 Score=28.61 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCC---CCCCccchHHHHHHHHHHhc
Q 027591 139 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDW---DKNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 139 ~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~---~~~g~Is~~eF~~~~~~~~~ 207 (221)
+..+..-|..+-. +|+|+++.|-+++ |.+-+.+-+.+||..+.. -....||.++...++.++.+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISD 95 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhc
Confidence 5777788888866 8999999998877 777677777777776531 23578999999999988754
No 129
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=89.78 E-value=1.3 Score=40.04 Aligned_cols=69 Identities=17% Similarity=0.082 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcH-----HHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 137 ATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTG-----RIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 137 ~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~-----~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
.....++..|..+++...|.++.+++...|...|...-. .++..++...+.+.-|++++.+|.+.|.+-
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 346788999999999999999999999999999887764 234445555566666999999999998763
No 130
>PLN02952 phosphoinositide phospholipase C
Probab=89.47 E-value=4.6 Score=35.40 Aligned_cols=54 Identities=15% Similarity=0.200 Sum_probs=38.2
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhh
Q 027591 70 SNGTIDHEELKKCFHKLEI--KFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYL 124 (221)
Q Consensus 70 ~~G~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~ 124 (221)
+.|.+++.+|..+.+.+.. ..+..++..+|..+.. +.+.++.++|..++.....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCC
Confidence 4678888888777766542 2367788888888854 3357888888888877654
No 131
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.42 E-value=0.65 Score=42.37 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=108.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCC--hhHHHH
Q 027591 57 RNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDD--PTALRA 134 (221)
Q Consensus 57 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~--~~~~~~ 134 (221)
..+..+|+.+|..++|.|+..+-..++...+ +....+-.++...|..+.|.++...|...+...-..... ...+..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 5678889999999999999999888887654 777788888888888888999999998887764332111 000000
Q ss_pred -----------------------------------HHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHH
Q 027591 135 -----------------------------------LEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAI 179 (221)
Q Consensus 135 -----------------------------------~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~ 179 (221)
......+...+|..+.+. .|.++....+-++...+ ++.+.+.
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~l~ 165 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDVLG 165 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChhhhc
Confidence 111234556668888766 79999999888887765 8888888
Q ss_pred HHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 180 KRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 180 ~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
.+....|.+.+|.++..+|.-.|...
T Consensus 166 ~iw~l~d~d~~g~Ld~~ef~~am~l~ 191 (847)
T KOG0998|consen 166 RIWELSDIDKDGNLDRDEFAVAMHLI 191 (847)
T ss_pred cccccccccccCCCChhhhhhhhhHH
Confidence 89999999999999999999887653
No 132
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=89.37 E-value=0.3 Score=38.64 Aligned_cols=68 Identities=25% Similarity=0.338 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLE-IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
+.+.+.=.|..+|.+.++.|...|++.+=.-+- ......=...++..+|.|+|..|++.|+...+...
T Consensus 331 eeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 331 EERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred hhheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 344666679999999999999999666532221 22344456788999999999999999999988764
No 133
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=88.90 E-value=0.84 Score=43.22 Aligned_cols=60 Identities=18% Similarity=0.441 Sum_probs=50.6
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 027591 61 AIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (221)
Q Consensus 61 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 121 (221)
..|+.||+|+.|.|+..+|.+++..- ...+..++..++.-...+.+..++|++|+.-+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 35788999999999999999998653 4567888888888888888999999999987664
No 134
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=86.71 E-value=0.69 Score=30.87 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=24.0
Q ss_pred CcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 173 STGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 173 ~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
+++++++.+...+-.|..|+|.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 78999999999999999999999999998763
No 135
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=86.65 E-value=16 Score=32.85 Aligned_cols=133 Identities=10% Similarity=0.105 Sum_probs=85.2
Q ss_pred hHHHHHHHHHhhcCCC-CCcccHHHHHHHHHHc--------CC--CCC---HHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 027591 55 SLRNCKAIFEKFDEDS-NGTIDHEELKKCFHKL--------EI--KFT---EEEINDLFEACDINKDMGMKFNEFIVLLC 120 (221)
Q Consensus 55 ~~~~~~~~F~~~D~~~-~G~i~~~e~~~~l~~~--------~~--~~~---~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 120 (221)
...-+..+|..++..+ ...+...+....|... |. ..+ +--++.+++.||...+|.|..-+|...+.
T Consensus 418 ~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i 497 (966)
T KOG4286|consen 418 SLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGII 497 (966)
T ss_pred cHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHH
Confidence 3445667777776543 4456666655544322 11 111 11257888999999999999999999998
Q ss_pred HhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH-------Hhc-------CCCCcHHHHHHHHhhcC
Q 027591 121 LVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAV-------TES-------GEGSTGRIAIKRFEEMD 186 (221)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l-------~~~-------g~~~~~~~~~~l~~~~d 186 (221)
.+++.. ..++++.+|+..-..+.-.+ ...|-.+| +.+ |.++.+ -+...|...
T Consensus 498 ~lck~~-----------leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvep-svrsCF~~v- 563 (966)
T KOG4286|consen 498 SLCKAH-----------LEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEP-SVRSCFQFV- 563 (966)
T ss_pred HHhcch-----------hHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCCh-HHHHHHHhc-
Confidence 887753 44888899998865555443 44444433 333 345555 456667643
Q ss_pred CCCCCccchHHHHHHH
Q 027591 187 WDKNGMVNFKEFLFAF 202 (221)
Q Consensus 187 ~~~~g~Is~~eF~~~~ 202 (221)
++...|++..|+..+
T Consensus 564 -~~~pei~~~~f~dw~ 578 (966)
T KOG4286|consen 564 -NNKPEIEAALFLDWM 578 (966)
T ss_pred -CCCCcchHHHHHHHh
Confidence 566678888888765
No 136
>PLN02222 phosphoinositide phospholipase C 2
Probab=85.01 E-value=3.5 Score=35.94 Aligned_cols=65 Identities=8% Similarity=0.046 Sum_probs=51.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CC-CCcHHHHHHHHhhcCC-CCCCccchHHHHHHHHHHh
Q 027591 140 ETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GE-GSTGRIAIKRFEEMDW-DKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 140 ~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~-~~~~~~~~~l~~~~d~-~~~g~Is~~eF~~~~~~~~ 206 (221)
..+..+|..|-. ++.++.++|..+|... +. ..+.+.+..++..+.. ...+.++++.|..++..-.
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~~ 92 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGDN 92 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCCC
Confidence 678889988853 4799999999999987 43 3578888888888642 3466799999999997743
No 137
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=84.74 E-value=6.4 Score=34.14 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCCCc
Q 027591 137 ATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGST 174 (221)
Q Consensus 137 ~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~~~~ 174 (221)
.....+.++|+..|.|++|.++-.|+..+=+.+ +.++.
T Consensus 192 ~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~ 230 (625)
T KOG1707|consen 192 RCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLD 230 (625)
T ss_pred HHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCC
Confidence 345778899999999999999999887655444 43333
No 138
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=84.14 E-value=4.5 Score=32.08 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh----hhccCChh-HHHHHHHHHHHHHHHHHh
Q 027591 75 DHEELKKCFHKL-EIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV----YLLKDDPT-ALRALEATFETLVDAFVF 148 (221)
Q Consensus 75 ~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~f~~ 148 (221)
|..++..+-... |+.+..-.-..+|...|.|++|.++-.|.-+++..- +...+.+. ..+.......--..+.+.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 556676665543 555555555677888899999999999887776543 22211111 112222222223356888
Q ss_pred hCCCCCCcccHHHHHHHHHh
Q 027591 149 LDKNKDGYVSRSEMTQAVTE 168 (221)
Q Consensus 149 ~D~~~~G~Is~~el~~~l~~ 168 (221)
.|.|.+..||.+||...-..
T Consensus 305 vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred cccchhhhhhHHHHHhhhhh
Confidence 99999999999999775544
No 139
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.80 E-value=1.2 Score=35.93 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHH-HHHHHHhhcCCCCCCccchHHHHHHH
Q 027591 139 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGR-IAIKRFEEMDWDKNGMVNFKEFLFAF 202 (221)
Q Consensus 139 ~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~-~~~~l~~~~d~~~~g~Is~~eF~~~~ 202 (221)
.+.++++|+.+|+.+.|+|+-+-++.++...+..+++. .+..+=..+++..-|.|-.++|...+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 46799999999999999999999999999887555544 44444444677777777777776554
No 140
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=83.55 E-value=3.9 Score=26.92 Aligned_cols=50 Identities=18% Similarity=0.305 Sum_probs=38.7
Q ss_pred HhhCCCCCCcccHHHHHHHHHhc----------CCCCcHHHHHHHHhhcCCCCCCccchH
Q 027591 147 VFLDKNKDGYVSRSEMTQAVTES----------GEGSTGRIAIKRFEEMDWDKNGMVNFK 196 (221)
Q Consensus 147 ~~~D~~~~G~Is~~el~~~l~~~----------g~~~~~~~~~~l~~~~d~~~~g~Is~~ 196 (221)
+.||...+-+||.+++.++++.- |..+|...+-.++-.....+...++..
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~ 69 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTD 69 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHH
Confidence 46899999999999999998763 778888888888777765555555543
No 141
>PLN02228 Phosphoinositide phospholipase C
Probab=83.43 E-value=5.5 Score=34.67 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=51.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CC-CCcHHHHHHHHhhcCCC----CCCccchHHHHHHHHHHhcC
Q 027591 140 ETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GE-GSTGRIAIKRFEEMDWD----KNGMVNFKEFLFAFTRWCGV 208 (221)
Q Consensus 140 ~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~-~~~~~~~~~l~~~~d~~----~~g~Is~~eF~~~~~~~~~~ 208 (221)
..+..+|..+-. ++.|+.++|..+|... +. ..+.+.+..++..+... ..|.++.+.|..++....+.
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~~n~ 96 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSDTNS 96 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCcccC
Confidence 778889988864 3689999999999887 33 35667788999888643 34679999999999775433
No 142
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=83.11 E-value=1 Score=27.37 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhc
Q 027591 157 VSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 157 Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~ 207 (221)
++..-|..++.. .+++.....+...++.-..++|+.++|++.++.+.|
T Consensus 9 ~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 9 MPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred ccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 444444444433 367777777777776666778888888888877665
No 143
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=82.36 E-value=2.5 Score=24.97 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=30.7
Q ss_pred HhhCCCCCCcccHHHHHHHHHhc----------CCCCcHHHHHHHHhhc
Q 027591 147 VFLDKNKDGYVSRSEMTQAVTES----------GEGSTGRIAIKRFEEM 185 (221)
Q Consensus 147 ~~~D~~~~G~Is~~el~~~l~~~----------g~~~~~~~~~~l~~~~ 185 (221)
+.||...+.+||++++.++.+.- |..++...+-+++..-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 46899999999999999998763 6677777766666544
No 144
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=80.70 E-value=11 Score=26.34 Aligned_cols=68 Identities=9% Similarity=0.045 Sum_probs=39.0
Q ss_pred CcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCC-------CCCcccHHHHHHHHHhc-CCCCcHHHHH
Q 027591 108 MGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKN-------KDGYVSRSEMTQAVTES-GEGSTGRIAI 179 (221)
Q Consensus 108 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~-------~~G~Is~~el~~~l~~~-g~~~~~~~~~ 179 (221)
+.++-.||..+-..... ...++..++..|..+ ..+.|+.+-|+.+|+.+ ...++++.+.
T Consensus 6 ~~lsp~eF~qLq~y~ey-------------s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~ 72 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY-------------STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQ 72 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-----------------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHH
T ss_pred eccCHHHHHHHHHHHHH-------------HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHH
Confidence 45677777766554322 124555555555322 35589999999999987 7779999999
Q ss_pred HHHhhcCCC
Q 027591 180 KRFEEMDWD 188 (221)
Q Consensus 180 ~l~~~~d~~ 188 (221)
+||..+-..
T Consensus 73 hLF~sF~~~ 81 (138)
T PF14513_consen 73 HLFLSFQKK 81 (138)
T ss_dssp HHHHHS---
T ss_pred HHHHHHhCc
Confidence 999998643
No 145
>PLN02230 phosphoinositide phospholipase C 4
Probab=79.95 E-value=8.3 Score=33.85 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=48.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcC-C--CCcHHHHHHHHhhcC-------CCCCCccchHHHHHHHHH
Q 027591 140 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESG-E--GSTGRIAIKRFEEMD-------WDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 140 ~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g-~--~~~~~~~~~l~~~~d-------~~~~g~Is~~eF~~~~~~ 204 (221)
..+..+|..|-.++ +.+|.++|..+|.... . ..+.+.+..++..+- .-..+.++++.|..++..
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 67899999996444 8999999999999874 2 346677777776442 123456999999999876
No 146
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=79.56 E-value=9.2 Score=24.16 Aligned_cols=53 Identities=9% Similarity=-0.029 Sum_probs=39.9
Q ss_pred CcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhc
Q 027591 155 GYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 155 G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~ 207 (221)
..||..||....+..|.++++..+..++..+..+.=.-.+-++=..++..+..
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~ 65 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAK 65 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 35999999999999999999999999999887555444555555555544433
No 147
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=79.48 E-value=2.1 Score=29.81 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=31.6
Q ss_pred CCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCC-------CCCCccchHHHHHHHHHHhcCC
Q 027591 153 KDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDW-------DKNGMVNFKEFLFAFTRWCGVG 209 (221)
Q Consensus 153 ~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~-------~~~g~Is~~eF~~~~~~~~~~~ 209 (221)
.-+.||..||.++=+-.. -+...+..++..+.. +..+.|+|+.|..+|..+....
T Consensus 4 ~~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d 65 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD 65 (138)
T ss_dssp --S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S
T ss_pred ceeccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC
Confidence 457899999988655442 133456666666532 3456899999999999887654
No 148
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.53 E-value=9.6 Score=26.56 Aligned_cols=60 Identities=18% Similarity=0.118 Sum_probs=45.5
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhc--CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 144 DAFVFLDKNKDGYVSRSEMTQAVTES--GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 144 ~~f~~~D~~~~G~Is~~el~~~l~~~--g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
.+|++...| |.++..|...+..-+ ...++...+..++.....-+...++|..|...+.+.
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~ 95 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRH 95 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 778888765 668888776654443 556999999999998876667778888888888754
No 149
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=76.23 E-value=10 Score=24.33 Aligned_cols=28 Identities=4% Similarity=0.106 Sum_probs=17.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 027591 140 ETLVDAFVFLDKNKDGYVSRSEMTQAVTES 169 (221)
Q Consensus 140 ~~~~~~f~~~D~~~~G~Is~~el~~~l~~~ 169 (221)
..++.+|... ...-.|+..+|...+..-
T Consensus 49 ~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 49 PSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 5567777765 245569999999988764
No 150
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=75.84 E-value=30 Score=31.90 Aligned_cols=124 Identities=13% Similarity=0.125 Sum_probs=77.4
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHH--HHHHHHHHHHhhCCC
Q 027591 75 DHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEA--TFETLVDAFVFLDKN 152 (221)
Q Consensus 75 ~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~D~~ 152 (221)
+++.|..++..+ .+..+++.+|..+..+...+++.++++.++..-... |...+.+-. ...++..+...|-.+
T Consensus 206 ~~e~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrD---pRLNeilfp~~~~~r~~~liekyEp~ 279 (1189)
T KOG1265|consen 206 TLEKFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRD---PRLNEILFPPADPRRIQSLIEKYEPN 279 (1189)
T ss_pred cHHHHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccC---cchhhhhcCCCCHHHHHHHHHHcCCc
Confidence 344455666554 455789999999988887899999999999875433 222222111 135666777777655
Q ss_pred ----CCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCC------------------CCCCccchHHHHHHHHH
Q 027591 153 ----KDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDW------------------DKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 153 ----~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~------------------~~~g~Is~~eF~~~~~~ 204 (221)
.+|.|+.+-|.+.+..-...+....--.++..++. --.|..|-+-|++++..
T Consensus 280 ~~~a~~gqms~dgf~ryl~gdEn~i~a~~~l~l~~dM~qPl~hYFINSSHNTYlTg~Ql~g~sSvEmYRQvLLs 353 (1189)
T KOG1265|consen 280 SDNAEKGQMSTDGFVRYLMGDENAIVALDKLDLVTDMDQPLSHYFINSSHNTYLTGGQLGGKSSVEMYRQVLLS 353 (1189)
T ss_pred hhhhhccccchhhhHHHhhCCccccccHHHHHhhhhhccchhhhhccccccceeecccccCcchHHHHHHHHHh
Confidence 47899999998888753222333233333333321 12466777777777755
No 151
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=74.62 E-value=16 Score=22.01 Aligned_cols=47 Identities=6% Similarity=-0.066 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q 027591 157 VSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 203 (221)
Q Consensus 157 Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~ 203 (221)
++-+++..++...|..+++.++..+++.-+..+--..+-+.+..++.
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 44457888888888888888888888886544433444444444443
No 152
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=73.55 E-value=9.5 Score=23.17 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=38.5
Q ss_pred CCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhh
Q 027591 107 DMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEE 184 (221)
Q Consensus 107 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~ 184 (221)
+-.++|......+...... ..+..+...|+.=+.+.|++++|.+.++.. +.+..+..++..
T Consensus 6 sp~~~F~~L~~~l~~~l~~--------------~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I---VGD~lL~s~I~~ 66 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHLPP--------------SKMDLLQKHYEEFKKKKISREEFVRKLRQI---VGDQLLRSAIKS 66 (70)
T ss_pred CCcccHHHHHHHHHHHCCH--------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3456666666666554332 445556666665568899999999999887 224444444443
No 153
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.40 E-value=3.5 Score=33.52 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 027591 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTE-EEINDLFEACDINKDMGMKFNEFIVLLC 120 (221)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~-~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 120 (221)
..+.++++|+.+|+.++|+|+..-+..++..++...++ +.+..+-..+++..-|.|-.+.|...+.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 46789999999999999999999999999998854444 4454444556666666666666555443
No 154
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=73.13 E-value=13 Score=20.21 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhCC--CCCCcccHHHHHHHHHhc
Q 027591 139 FETLVDAFVFLDK--NKDGYVSRSEMTQAVTES 169 (221)
Q Consensus 139 ~~~~~~~f~~~D~--~~~G~Is~~el~~~l~~~ 169 (221)
...+..+|+.|-. ....+|+..||+.++...
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 3567788888852 245689999999998764
No 155
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=72.14 E-value=5.6 Score=24.09 Aligned_cols=28 Identities=11% Similarity=0.336 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 027591 56 LRNCKAIFEKFDEDSNGTIDHEELKKCFH 84 (221)
Q Consensus 56 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~ 84 (221)
.+.+...|+.+ .++.++||..+|+..|.
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 35788999999 66789999999998863
No 156
>PLN02223 phosphoinositide phospholipase C
Probab=71.05 E-value=17 Score=31.41 Aligned_cols=65 Identities=8% Similarity=-0.052 Sum_probs=48.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHH---Hhc-C-CCCcHHHHHHHHhhcCC--------CCCCccchHHHHHHHHHH
Q 027591 140 ETLVDAFVFLDKNKDGYVSRSEMTQAV---TES-G-EGSTGRIAIKRFEEMDW--------DKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 140 ~~~~~~f~~~D~~~~G~Is~~el~~~l---~~~-g-~~~~~~~~~~l~~~~d~--------~~~g~Is~~eF~~~~~~~ 205 (221)
+.++.+|..|- .+.|.++.+.+.+++ ... | ...+.+.++.++..+-. ...+.++.+.|..++..-
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~ 93 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFST 93 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCc
Confidence 67888999994 677999999999988 544 3 35667777777776432 123679999999999773
No 157
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.51 E-value=9.1 Score=34.10 Aligned_cols=64 Identities=23% Similarity=0.328 Sum_probs=51.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhc--------CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 140 ETLVDAFVFLDKNKDGYVSRSEMTQAVTES--------GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 140 ~~~~~~f~~~D~~~~G~Is~~el~~~l~~~--------g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
.+++..|..+|. ++|.++.+++..++... ....+.+....++...+.+..|.+.++++.-.+..
T Consensus 18 ~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 18 DKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred HHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 788889999997 89999999999988766 23456677778888999888888888877776654
No 158
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=66.78 E-value=22 Score=23.55 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=42.7
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHH
Q 027591 143 VDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLF 200 (221)
Q Consensus 143 ~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~ 200 (221)
..+|-+++.-++-..+..++..+|.+.|..+.++.++.++..+. |+ +.++.+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 34666777788888999999999999999999999999999984 32 4555543
No 159
>PLN02228 Phosphoinositide phospholipase C
Probab=66.50 E-value=37 Score=29.76 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHHh
Q 027591 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEI--KFTEEEINDLFEACDIN----KDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~----~~~~i~~~ef~~~~~~~ 122 (221)
...++..+|..+..+ +.++.++|..+|..... ..+.+.+..++..+... ..+.++.+.|..++...
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 456788888888643 57999999999988642 35667788888887543 23579999999988654
No 160
>PLN02222 phosphoinositide phospholipase C 2
Probab=66.38 E-value=31 Score=30.35 Aligned_cols=66 Identities=24% Similarity=0.422 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhCC-CCCCcccHHHHHHHHHHh
Q 027591 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEI--KFTEEEINDLFEACDI-NKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~-~~~~~i~~~ef~~~~~~~ 122 (221)
....+..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..++...
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 34578888888864 479999999999988653 3467778888877532 234569999999988753
No 161
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=65.89 E-value=40 Score=23.10 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhhcCCC--CCcccHHHHHHHHHHcC-------CC-CC----------HHHHHHHHHhhCCCCCCcccHHH
Q 027591 55 SLRNCKAIFEKFDEDS--NGTIDHEELKKCFHKLE-------IK-FT----------EEEINDLFEACDINKDMGMKFNE 114 (221)
Q Consensus 55 ~~~~~~~~F~~~D~~~--~G~i~~~e~~~~l~~~~-------~~-~~----------~~~~~~l~~~~d~~~~~~i~~~e 114 (221)
.+..+.++|+...-+. +..++..++..++..+- .. .. +--+..++..||+.++|.|..-.
T Consensus 39 ~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls 118 (127)
T PF09068_consen 39 DLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLS 118 (127)
T ss_dssp -HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHH
T ss_pred eHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhH
Confidence 4566778888776442 56799999999887642 11 11 11257788999999999999999
Q ss_pred HHHHHHHh
Q 027591 115 FIVLLCLV 122 (221)
Q Consensus 115 f~~~~~~~ 122 (221)
|...+..+
T Consensus 119 ~KvaL~~L 126 (127)
T PF09068_consen 119 FKVALITL 126 (127)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 98887653
No 162
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=65.52 E-value=5.5 Score=26.70 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 027591 90 FTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (221)
Q Consensus 90 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 121 (221)
++++.++.++..+-.|..|+|.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 68889999999999999999999999988764
No 163
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=65.12 E-value=29 Score=23.23 Aligned_cols=52 Identities=8% Similarity=0.135 Sum_probs=41.2
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHH
Q 027591 144 DAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLF 200 (221)
Q Consensus 144 ~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~ 200 (221)
.+|-+.-..|+..+|.+++..+|...|..+.+..+..+++.+.. .+.++.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34555555677789999999999999999999999999999852 55666665
No 164
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=64.92 E-value=13 Score=24.19 Aligned_cols=52 Identities=15% Similarity=0.050 Sum_probs=31.9
Q ss_pred CCcccHHHHHHHHHhc--CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 154 DGYVSRSEMTQAVTES--GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 154 ~G~Is~~el~~~l~~~--g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
||.++..|...+-..+ ...+++.+...++..+........++.+|.+.+...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5777777766655433 124667777777766655445556677776665543
No 165
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=63.27 E-value=42 Score=27.24 Aligned_cols=92 Identities=20% Similarity=0.167 Sum_probs=61.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-----
Q 027591 95 INDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES----- 169 (221)
Q Consensus 95 ~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~----- 169 (221)
+..++..+|..+.|.++.-.....+..++..+ ..++++.+|.... +.+|.+..-.+.++++..
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc~gk-----------~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT 179 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLCGGK-----------IKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPT 179 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhccch-----------HHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCc
Confidence 45566788999999888766666666665533 4588999999886 557888888888888765
Q ss_pred ----CC--CCcHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q 027591 170 ----GE--GSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 203 (221)
Q Consensus 170 ----g~--~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~ 203 (221)
|. ..++.-+..-|. ...+++++.|++.+.
T Consensus 180 ~v~e~psfg~te~~a~~cf~-----qqrKv~Ln~fldtl~ 214 (434)
T KOG4301|consen 180 AVFEGPSFGYTELSARLCFL-----QQRKVELNQFLDTLM 214 (434)
T ss_pred hhhcCCCcchHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence 21 123333333333 245688888887764
No 166
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=62.20 E-value=9.9 Score=17.08 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=6.3
Q ss_pred CCCCCcccHHHHH
Q 027591 151 KNKDGYVSRSEMT 163 (221)
Q Consensus 151 ~~~~G~Is~~el~ 163 (221)
.+++|.|+.-++.
T Consensus 2 vN~DG~vna~D~~ 14 (21)
T PF00404_consen 2 VNGDGKVNAIDLA 14 (21)
T ss_dssp TTSSSSSSHHHHH
T ss_pred CCCCCcCCHHHHH
Confidence 4455555554443
No 167
>PLN02230 phosphoinositide phospholipase C 4
Probab=61.34 E-value=53 Score=29.08 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHhhCC-------CCCCcccHHHHHHHHHH
Q 027591 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEI---KFTEEEINDLFEACDI-------NKDMGMKFNEFIVLLCL 121 (221)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~-------~~~~~i~~~ef~~~~~~ 121 (221)
....+..+|..+..++ +.++.++|..+|..... ..+.+.+..++..+-. -..+.++++.|..++..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4568899999996554 89999999999998653 2356666666654311 12346999999998865
No 168
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=60.91 E-value=22 Score=31.97 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=68.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHH--HH
Q 027591 59 CKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRA--LE 136 (221)
Q Consensus 59 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~--~~ 136 (221)
+.-+++.||..++|.|..-.|+..+..+...+.++....+|.....++...+ -..|-.++..+...++.-..-.. ..
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgs 550 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGS 550 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCC
Confidence 4556788999999999999999998888766777777799998865554433 66666666665443211111000 11
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 027591 137 ATFETLVDAFVFLDKNKDGYVSRSEMTQAVT 167 (221)
Q Consensus 137 ~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~ 167 (221)
.....++.+|... ++.-.|+...|...+.
T Consensus 551 NvepsvrsCF~~v--~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 551 NIEPSVRSCFQFV--NNKPEIEAALFLDWMR 579 (966)
T ss_pred CCChHHHHHHHhc--CCCCcchHHHHHHHhc
Confidence 1234677788733 4556677777766553
No 169
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=59.96 E-value=40 Score=22.45 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=43.2
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 145 AFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 145 ~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
+|-+.-..|+..+|.+++..+|...|..+.+..+..+++.+.. .+.++.+..-..
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~~ 60 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhHh
Confidence 4444555677789999999999999999999999999998852 566777765444
No 170
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=59.93 E-value=42 Score=21.25 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=48.1
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhh
Q 027591 72 GTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFL 149 (221)
Q Consensus 72 G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 149 (221)
..||..||..+....++.++.+.+..+...+..+.-.-.+-++=..++..+... .+ +.....+..+|..|
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~i-T~-------p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKI-TS-------PQTAKQVNELFEQF 82 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh-cC-------HHHHHHHHHHHHHH
Confidence 368999999999999999999999999988866655556666655555544332 11 22345566666544
No 171
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=57.38 E-value=38 Score=20.54 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc----CCCCcHHHHHHHHhhc
Q 027591 138 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTES----GEGSTGRIAIKRFEEM 185 (221)
Q Consensus 138 ~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~----g~~~~~~~~~~l~~~~ 185 (221)
....+..+....+....--|-..+++.++..+ |...+++.+..+|..|
T Consensus 21 a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 21 ALEHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 34566666666664433345556888877776 8888999999999875
No 172
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=55.31 E-value=54 Score=21.11 Aligned_cols=83 Identities=19% Similarity=0.200 Sum_probs=53.1
Q ss_pred CCcccHHHHHHHHHHcC--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHh
Q 027591 71 NGTIDHEELKKCFHKLE--IKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVF 148 (221)
Q Consensus 71 ~G~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 148 (221)
+|.++..|...+-.-+. ..++..+...++..+........++.+|+..+..... + ......+..+|..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~r~~~l~~L~~v 82 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFD----Y------EERLELVEALWEV 82 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCC----H------HHHHHHHHHHHHH
Confidence 78888888766554321 3567777777877776666666888898888775431 1 1123455556665
Q ss_pred hCCCCCCcccHHHHHHH
Q 027591 149 LDKNKDGYVSRSEMTQA 165 (221)
Q Consensus 149 ~D~~~~G~Is~~el~~~ 165 (221)
.-. ||.++..|-.-+
T Consensus 83 A~A--DG~~~~~E~~~l 97 (104)
T cd07313 83 AYA--DGELDEYEEHLI 97 (104)
T ss_pred HHh--cCCCCHHHHHHH
Confidence 544 577888776544
No 173
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=54.88 E-value=91 Score=23.61 Aligned_cols=86 Identities=9% Similarity=0.046 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcc-cHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCC
Q 027591 77 EELKKCFHKLEIKFTEEEINDLFEACDINKDMGM-KFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDG 155 (221)
Q Consensus 77 ~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i-~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G 155 (221)
.+|..++.++|+++....- + -...+ +..+|..-+.. +.+..+...... +.|
T Consensus 61 ~~f~~~~~~lGvdp~~s~~--~-------~s~~l~~~~~f~~ELa~------------------qi~e~c~~~~~~-~GG 112 (223)
T PF04157_consen 61 SQFQSMCASLGVDPLASSK--F-------WSESLKGSGDFYYELAV------------------QIAEVCLATRSK-NGG 112 (223)
T ss_dssp HHHHHHHHHHT--CHCCTT--C-------CCCCCSCHHHHHHHHHH------------------HHHHHHHHHCCT-TTS
T ss_pred HHHHHHHHHcCCCcccchh--h-------hhhccccchhHHHHHHH------------------HHHHHHHHHHhc-CCC
Confidence 5788888888876521000 0 01123 55555555442 222233333433 346
Q ss_pred cccHHHHHHHHHhcC---CCCcHHHHHHHHhhcCCCCC
Q 027591 156 YVSRSEMTQAVTESG---EGSTGRIAIKRFEEMDWDKN 190 (221)
Q Consensus 156 ~Is~~el~~~l~~~g---~~~~~~~~~~l~~~~d~~~~ 190 (221)
.|+..|+...+.+.. ..++++++...++.+..-+.
T Consensus 113 ii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~ 150 (223)
T PF04157_consen 113 IISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGL 150 (223)
T ss_dssp EEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTS
T ss_pred EEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCC
Confidence 777777777777652 35677777777666654443
No 174
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=54.74 E-value=78 Score=29.17 Aligned_cols=139 Identities=12% Similarity=0.168 Sum_probs=81.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHH-HHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHH
Q 027591 57 RNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEIN-DLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAL 135 (221)
Q Consensus 57 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~-~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 135 (221)
..++..+...|...-..|+..+++..|....+.++..... +-|... .-..+.++|+.|..+...+.......
T Consensus 144 ~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~~a------ 216 (1267)
T KOG1264|consen 144 RWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQKA------ 216 (1267)
T ss_pred HHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccchh------
Confidence 4556677777877777899999999998887776654432 333333 23456799999988877654321000
Q ss_pred HHHHHHHHHHHHh--hCCCCCCcccHHHHHHHHHhcCCCCcH---HHHHHHHhhcC-----CCCCCccchHHHHHHHHH
Q 027591 136 EATFETLVDAFVF--LDKNKDGYVSRSEMTQAVTESGEGSTG---RIAIKRFEEMD-----WDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 136 ~~~~~~~~~~f~~--~D~~~~G~Is~~el~~~l~~~g~~~~~---~~~~~l~~~~d-----~~~~g~Is~~eF~~~~~~ 204 (221)
........|-. -+.-.--.++..+|.++|......... ..+..+++.+- .-....+++.+|+.++-+
T Consensus 217 --~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 217 --ILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred --hhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhh
Confidence 00111111111 111223578999999999765221111 13444444432 234567899999998744
No 175
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=54.66 E-value=58 Score=21.27 Aligned_cols=61 Identities=18% Similarity=0.364 Sum_probs=40.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC---CCCcccHHHHHHHHHHh
Q 027591 57 RNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDIN---KDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 57 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~---~~~~i~~~ef~~~~~~~ 122 (221)
..+..-|..+.. +|.|....|-.++ |..-+.+...++|..+... ....|+.+|...++..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 356777888877 8999999999876 5556777777887665221 24569999988888754
No 176
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=53.87 E-value=31 Score=20.49 Aligned_cols=33 Identities=6% Similarity=0.148 Sum_probs=29.5
Q ss_pred CCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcC
Q 027591 154 DGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMD 186 (221)
Q Consensus 154 ~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d 186 (221)
+-.|+.+-++.++...|.+.|+..+..+++.+.
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 457999999999999999999999999988763
No 177
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=53.45 E-value=4.2 Score=30.01 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=33.2
Q ss_pred CCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 027591 106 KDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAV 166 (221)
Q Consensus 106 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l 166 (221)
.+|.++-.|.+.+-..+.. ....+...|...|.|++|+|+.+|+...+
T Consensus 201 ~d~~~sh~el~pl~ap~ip-------------me~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPLIP-------------MEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccccccccccccCCccc-------------HHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 3566666665554433322 34677888999999999999999887655
No 178
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.28 E-value=68 Score=28.80 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=60.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhC
Q 027591 71 NGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLD 150 (221)
Q Consensus 71 ~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D 150 (221)
+| ++.+++. ......+..++.+|..+|. ++|.++-+++..++........ .........+....++...|
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 71 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANW---LSLIKKQTEEYAALIMEELD 71 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhh---hhhhhhhhhHHHHHhhhhcc
Confidence 45 7777777 3334556677778888876 7888888888888777655432 11112223345556788889
Q ss_pred CCCCCcccHHHHHHHHHhc
Q 027591 151 KNKDGYVSRSEMTQAVTES 169 (221)
Q Consensus 151 ~~~~G~Is~~el~~~l~~~ 169 (221)
.++.|++...++..++...
T Consensus 72 ~~~~~y~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 72 PDHKGYITNEDLEILLLQI 90 (646)
T ss_pred ccccceeeecchhHHHHhc
Confidence 9999999999888887643
No 179
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=52.02 E-value=41 Score=20.02 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=28.6
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 027591 71 NGTIDHEELKKCFHKLEIKFTEEEINDLFEAC 102 (221)
Q Consensus 71 ~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 102 (221)
+=.|+.+.++..+...|..+++..++.+++..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44799999999999999999999999988765
No 180
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.66 E-value=36 Score=24.96 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 027591 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLF 99 (221)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 99 (221)
.-+.++++|.-||+..-...+-.++..++..-++--....+..+.
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi 95 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATI 95 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHH
Confidence 456799999999999888899999999998777666665555444
No 181
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=50.59 E-value=73 Score=21.20 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=41.4
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 027591 61 AIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVL 118 (221)
Q Consensus 61 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 118 (221)
..|-.+...++...+..+++.+|.+.|.....+.++.+++.+. |+ +.+|.+..
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 3455566677888999999999999999999999999998873 33 56665543
No 182
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=50.23 E-value=71 Score=21.45 Aligned_cols=50 Identities=8% Similarity=0.117 Sum_probs=38.4
Q ss_pred HHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHH
Q 027591 146 FVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLF 200 (221)
Q Consensus 146 f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~ 200 (221)
|-+.-..++..+|.+++..+|...|..+.+..+..+++.+.. .+.++.+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 333334566679999999999999999999999999988842 45566663
No 183
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.22 E-value=1.2e+02 Score=23.68 Aligned_cols=115 Identities=13% Similarity=0.052 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhh-cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHH
Q 027591 55 SLRNCKAIFEKF-DEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALR 133 (221)
Q Consensus 55 ~~~~~~~~F~~~-D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 133 (221)
....+...|..+ |++.+..|..+=+..++..+|..+..-.+--+.-.+....-+.++.++|+..+..+.... ......
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS-~d~lq~ 140 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDS-IDKLQQ 140 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCc-HHHHHH
Confidence 345666777665 565557888888888999999887766655555556666667899999999887764321 011111
Q ss_pred HH----------HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 027591 134 AL----------EATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESG 170 (221)
Q Consensus 134 ~~----------~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g 170 (221)
.+ .......+.+|..-.--+--.|+.+.=..++..+.
T Consensus 141 ~l~~l~~~l~d~~~Fk~iY~faf~fa~e~~qk~Ld~~~ai~~w~ll~ 187 (260)
T KOG3077|consen 141 RLDFLRSVLKDLEKFKSIYRFAFNFAKEPGQKSLDLETAISLWKLLF 187 (260)
T ss_pred HHHHHHHHHccHHHhhHHHHhhhhhccCcCcCcCCHHHHHHHHHHHh
Confidence 11 11122333444433322344577776666666664
No 184
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=50.16 E-value=1e+02 Score=22.76 Aligned_cols=80 Identities=11% Similarity=0.250 Sum_probs=52.1
Q ss_pred cccccCCcccHHHHHHHHHHHhhh-hCCCCHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCC
Q 027591 10 SATSTWMPETKLEAKMVEAMQRRA-AEGTALKSFNSIILKFPKIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEI 88 (221)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~ 88 (221)
...+.|.....-...+.+.|-... ..+++ ...++. .-+.++++|..||+.+--..+-+++..+|...++
T Consensus 17 YHD~eWG~p~~Dd~~LFE~l~Le~fQAGLS---W~tVL~-------KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gI 86 (188)
T COG2818 17 YHDTEWGVPLHDDQRLFELLCLEGFQAGLS---WLTVLK-------KREAFREAFHGFDPEKVAAMTEEDVERLLADAGI 86 (188)
T ss_pred ccccccCCCCCChHHHHHHHHHHHHhccch---HHHHHH-------hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcch
Confidence 344555544444555666655433 22332 222222 4578999999999999999999999999988887
Q ss_pred CCCHHHHHHHH
Q 027591 89 KFTEEEINDLF 99 (221)
Q Consensus 89 ~~~~~~~~~l~ 99 (221)
--....+..+.
T Consensus 87 IR~r~KI~A~i 97 (188)
T COG2818 87 IRNRGKIKATI 97 (188)
T ss_pred hhhHHHHHHHH
Confidence 66666665544
No 185
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=49.13 E-value=58 Score=19.62 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 027591 74 IDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLV 122 (221)
Q Consensus 74 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 122 (221)
++-.++..++...+..++..++..+++.-+..+-..++-+.+..++.-+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 4456777777777888888888888877655554556655555555543
No 186
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=49.11 E-value=42 Score=22.86 Aligned_cols=46 Identities=9% Similarity=0.072 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCCCcHHHHHHHHhhcC
Q 027591 138 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-GEGSTGRIAIKRFEEMD 186 (221)
Q Consensus 138 ~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-g~~~~~~~~~~l~~~~d 186 (221)
...++..+|+.|- ++.|+.+.+..++... |..+|...+..+...+-
T Consensus 35 f~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~ 81 (122)
T PF06648_consen 35 FLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVY 81 (122)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHH
Confidence 3477788888887 4568998888888877 67888888888877764
No 187
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=48.78 E-value=42 Score=27.24 Aligned_cols=65 Identities=11% Similarity=-0.021 Sum_probs=49.7
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCC
Q 027591 144 DAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCGVG 209 (221)
Q Consensus 144 ~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~~~ 209 (221)
.....+|+.+.|.+++....-+|....-.--.+.+..+|..+. +++|.+.+..|.+++....+.+
T Consensus 114 flLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslp 178 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLP 178 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCC
Confidence 3455789999999999988888877622233457788888886 7889899999888887766554
No 188
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=48.60 E-value=1.1e+02 Score=25.75 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHH
Q 027591 56 LRNCKAIFEKFDEDSNGTIDHEELKKCFHK-LEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRA 134 (221)
Q Consensus 56 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 134 (221)
.+.++.+-+.+|.|.+|.|+.+|=-.+++. +...-+...-..-| ...|..|+.++.-..+...... +=..++.
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~f----H~dD~~ItVedLWeaW~~Sev~--nWT~e~t 140 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKF----HGDDKHITVEDLWEAWKESEVH--NWTNERT 140 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhc----cCCccceeHHHHHHHHHhhhhh--cchHHHH
Confidence 567888899999999999999998888876 44333332222223 2246678888877766553321 1122222
Q ss_pred HHHH-----HHHHHHHHHhhCCCC
Q 027591 135 LEAT-----FETLVDAFVFLDKNK 153 (221)
Q Consensus 135 ~~~~-----~~~~~~~f~~~D~~~ 153 (221)
++|. ...+..+|+....+|
T Consensus 141 vqWLi~~VeLPqyve~fk~~kv~G 164 (575)
T KOG4403|consen 141 VQWLINDVELPQYVEAFKAKKVDG 164 (575)
T ss_pred HHHHHHhcccHHHHHHHHhccCCc
Confidence 2322 234556676655544
No 189
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=48.59 E-value=40 Score=27.48 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=21.1
Q ss_pred CCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHH
Q 027591 154 DGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFA 201 (221)
Q Consensus 154 ~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~ 201 (221)
.|.||++|=...++..-...++..++.+++.++ ||-++|..+
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~ 341 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKT 341 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHH
Confidence 455555555555555433344445555555554 455555443
No 190
>PRK00523 hypothetical protein; Provisional
Probab=48.20 E-value=42 Score=20.43 Aligned_cols=42 Identities=5% Similarity=0.042 Sum_probs=33.6
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhc
Q 027591 143 VDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEM 185 (221)
Q Consensus 143 ~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~ 185 (221)
+..|+.+=++ +-.|+.+-++.++...|.+.|+..++.+++.+
T Consensus 27 rk~~~k~l~~-NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQIRE-NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHHH-CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3445444332 46799999999999999999999999999887
No 191
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=47.70 E-value=27 Score=20.82 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=31.8
Q ss_pred CCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCC
Q 027591 153 KDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDK 189 (221)
Q Consensus 153 ~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~ 189 (221)
.++.++..++...+...|..++++-+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3578999999999999999999999999999987544
No 192
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=47.68 E-value=74 Score=20.45 Aligned_cols=82 Identities=12% Similarity=0.171 Sum_probs=48.4
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHH---HHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhh
Q 027591 73 TIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFN---EFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFL 149 (221)
Q Consensus 73 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~---ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 149 (221)
.....+++..+......++...+.++++..... +|+-. ++...+..+ .......+-...
T Consensus 3 ~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~---Rvs~~A~~~l~~~~e~~---------------~~~i~~~A~~~A 64 (91)
T COG2036 3 AVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE---RVSSSAIEELQEALEEY---------------LEEIAEDAVELA 64 (91)
T ss_pred cchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH---HhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHH
Confidence 344556666666666667777777777766443 33322 222222222 113334444455
Q ss_pred CCCCCCcccHHHHHHHHHhcCCC
Q 027591 150 DKNKDGYVSRSEMTQAVTESGEG 172 (221)
Q Consensus 150 D~~~~G~Is~~el~~~l~~~g~~ 172 (221)
...+.-+|..+++...++..|..
T Consensus 65 ~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 65 EHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred HHcCCCeecHHHHHHHHHHhccc
Confidence 56677789999999998887643
No 193
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.55 E-value=50 Score=20.00 Aligned_cols=43 Identities=5% Similarity=0.030 Sum_probs=33.7
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcC
Q 027591 143 VDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMD 186 (221)
Q Consensus 143 ~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d 186 (221)
+..+..+=++ +-.|+.+-++.++...|.+.|+..++++++.+-
T Consensus 26 rk~~~k~lk~-NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 26 RKQMKKQLKD-NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHHhh-CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3444444333 457999999999999999999999999988764
No 194
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=47.19 E-value=45 Score=18.22 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q 027591 160 SEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 203 (221)
Q Consensus 160 ~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~ 203 (221)
+|....|..+| .++.++..++..+.. ...++.++.++...
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~aL 43 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQAL 43 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHHH
Confidence 56777788888 888888888888864 34466676666543
No 195
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=47.05 E-value=52 Score=21.20 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=22.7
Q ss_pred CCcccHHHHHHHHHhc-CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHh
Q 027591 154 DGYVSRSEMTQAVTES-GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 154 ~G~Is~~el~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~ 206 (221)
||.++..|...+-..+ ....++.....+...+..-.....++.+|.+.+....
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 66 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRAC 66 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 5667776655443333 1223332333333322211111245666666655543
No 196
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=46.31 E-value=32 Score=24.04 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=39.7
Q ss_pred CCCcccHHHHHHHHHhc---------CCCCcHHHHHHHHhhcCCCCCC-ccchHHHHHHH
Q 027591 153 KDGYVSRSEMTQAVTES---------GEGSTGRIAIKRFEEMDWDKNG-MVNFKEFLFAF 202 (221)
Q Consensus 153 ~~G~Is~~el~~~l~~~---------g~~~~~~~~~~l~~~~d~~~~g-~Is~~eF~~~~ 202 (221)
|+-.||.+||.+++..- -+.+.++.+..+.+.+.....+ .+|+.|-+++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~~ 139 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRAA 139 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHHh
Confidence 67889999999999875 2457899999999999876555 49998877653
No 197
>PRK00523 hypothetical protein; Provisional
Probab=45.55 E-value=56 Score=19.92 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=28.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 027591 71 NGTIDHEELKKCFHKLEIKFTEEEINDLFEAC 102 (221)
Q Consensus 71 ~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 102 (221)
+=.|+.+.++..+...|..+++..++.+++..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45799999999999999999999999998776
No 198
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=44.78 E-value=8.7 Score=28.44 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=41.5
Q ss_pred HHHhhCCC-CCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q 027591 145 AFVFLDKN-KDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFT 203 (221)
Q Consensus 145 ~f~~~D~~-~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~ 203 (221)
-|..+|+. -+|++|..|+.-+-..+ -..+..+..+|+..|.++||.|++.++...+.
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeccccCCCccccccccccccccCCc--ccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 45556664 68999999886542221 12355677899999999999999999987764
No 199
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.45 E-value=17 Score=35.84 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC----CcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhc
Q 027591 138 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEG----STGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 138 ~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~----~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~ 207 (221)
..+...++|..||++..|+|...++..+++.+..+ ..... +.+-..+....++.|++.+-+.++.+...
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r~l 1487 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKRVL 1487 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHHhh
Confidence 45778899999999999999999999999998322 22222 34444456678899999999999887543
No 200
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=44.08 E-value=32 Score=23.58 Aligned_cols=80 Identities=23% Similarity=0.249 Sum_probs=42.2
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHH
Q 027591 70 SNGTIDHEELKKCFHKL--EIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFV 147 (221)
Q Consensus 70 ~~G~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 147 (221)
-||.++..|...+...+ ...++......++..++.-....+++.+|+..+..... ......-+..++.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~r~~ll~~l~~ 105 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLS----------PEEREDLLRMLIA 105 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS------------HHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhc----------hHHHHHHHHHHHH
Confidence 38889999887766554 23344555555555554433445777777665543211 1112355566666
Q ss_pred hhCCCCCCcccHHH
Q 027591 148 FLDKNKDGYVSRSE 161 (221)
Q Consensus 148 ~~D~~~~G~Is~~e 161 (221)
..-.| |.++..|
T Consensus 106 ia~AD--G~~~~~E 117 (140)
T PF05099_consen 106 IAYAD--GEISPEE 117 (140)
T ss_dssp HCTCT--TC-SCCH
T ss_pred HHhcC--CCCCHHH
Confidence 66654 4555544
No 201
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=43.09 E-value=1.4e+02 Score=23.93 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=48.2
Q ss_pred HHHHHHHHhhCC---------CCCCcccHHHHHHHHHhc---------------CCCCcHHHHHHHHhhcCCC-----CC
Q 027591 140 ETLVDAFVFLDK---------NKDGYVSRSEMTQAVTES---------------GEGSTGRIAIKRFEEMDWD-----KN 190 (221)
Q Consensus 140 ~~~~~~f~~~D~---------~~~G~Is~~el~~~l~~~---------------g~~~~~~~~~~l~~~~d~~-----~~ 190 (221)
..+..+|..|++ =++-+||..+|.+++-++ ...+++..+..+.+.+=.| .+
T Consensus 192 ~~~leLf~~yn~~khl~lm~~L~~t~ltE~QFaQiiGR~RLYQ~LP~~~qk~lP~ll~tD~qiN~vak~Y~~d~nF~~~~ 271 (323)
T PF12987_consen 192 RKVLELFQNYNPAKHLHLMQTLGDTSLTEHQFAQIIGRMRLYQALPQGEQKRLPRLLITDSQINTVAKAYYNDENFGRKG 271 (323)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccCcccHHHHHHHHhHHHHHHhCCHhHHhhCCceecchHHHHHHHHHHhcCcccccCC
Confidence 444455555553 257789999999998765 2346888999998886322 27
Q ss_pred CccchHHHHHHHHHHh
Q 027591 191 GMVNFKEFLFAFTRWC 206 (221)
Q Consensus 191 g~Is~~eF~~~~~~~~ 206 (221)
|.||...|..+++...
T Consensus 272 ~~Is~W~~ynLlT~An 287 (323)
T PF12987_consen 272 GEISMWNFYNLLTGAN 287 (323)
T ss_pred CcccHHHHHHHHhccc
Confidence 8899999999987643
No 202
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=42.94 E-value=24 Score=22.00 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=22.3
Q ss_pred CCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcC
Q 027591 153 KDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMD 186 (221)
Q Consensus 153 ~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d 186 (221)
..|+||.+++..+|.... ++++.+..++..+.
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--LDPEQIDEIYDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHH
Confidence 469999999999997544 88899999988875
No 203
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=42.78 E-value=48 Score=24.45 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=25.2
Q ss_pred CCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcC
Q 027591 150 DKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMD 186 (221)
Q Consensus 150 D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d 186 (221)
..+.+|+++.+++.+.+..-+..++.+++..++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4577899999999999988788899999999998854
No 204
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.12 E-value=49 Score=32.92 Aligned_cols=70 Identities=10% Similarity=0.179 Sum_probs=50.6
Q ss_pred CCchhHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 027591 51 KIDDSLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKF----TEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (221)
Q Consensus 51 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~----~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 121 (221)
..+++.+.+.++|..+|++..|.|...++..++..+...+ ..+. +.+--.+....++.|++.+-+.++..
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 5577889999999999999999999999999998874332 2212 22333344456788998876666554
No 205
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=41.75 E-value=44 Score=28.50 Aligned_cols=62 Identities=10% Similarity=0.186 Sum_probs=46.0
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh---CC-----CCCCcccHHHHHHHHHH
Q 027591 60 KAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEAC---DI-----NKDMGMKFNEFIVLLCL 121 (221)
Q Consensus 60 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~---d~-----~~~~~i~~~ef~~~~~~ 121 (221)
.-+|..+....++.+++..|..+|++.|+.-++..+..++..+ +. ...+.++.+.|...+..
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 3468888777789999999999999999988877777666544 32 12345777777776554
No 206
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=41.35 E-value=1.1e+02 Score=20.56 Aligned_cols=51 Identities=14% Similarity=0.300 Sum_probs=39.0
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 027591 62 IFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIV 117 (221)
Q Consensus 62 ~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 117 (221)
+|-.+-..++..+|..++..+|...|..+...++..+++.+. ..++++.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 344445556778999999999999999999999998888873 155666554
No 207
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=40.38 E-value=1e+02 Score=19.85 Aligned_cols=33 Identities=12% Similarity=0.013 Sum_probs=23.7
Q ss_pred HHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCC
Q 027591 175 GRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCGVGE 210 (221)
Q Consensus 175 ~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~~~~ 210 (221)
.+.+..++..+- +|.|+-+||...+....+++.
T Consensus 25 ~~~Vr~LV~~L~---~~~i~~EeF~~~Lq~~lns~~ 57 (92)
T smart00549 25 AERVRTLVLGLV---NGTITAEEFTSRLQEALNSPL 57 (92)
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHcCCC
Confidence 445666666653 678999999998888766653
No 208
>PRK01844 hypothetical protein; Provisional
Probab=39.90 E-value=65 Score=19.64 Aligned_cols=42 Identities=5% Similarity=0.068 Sum_probs=33.3
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhc
Q 027591 143 VDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEM 185 (221)
Q Consensus 143 ~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~ 185 (221)
+..|..+=++ +-.|+.+-++.++...|.+.|+..++.+.+.+
T Consensus 26 rk~~~k~lk~-NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 26 RKYMMNYLQK-NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3444444333 45799999999999999999999999998877
No 209
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=39.59 E-value=70 Score=23.65 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 027591 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLF 99 (221)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 99 (221)
.-+.++++|.-||+..=-..+-+++..++..-++--....+..+.
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi 96 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAII 96 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHH
Confidence 457899999999998888889999999988766655555555444
No 210
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.71 E-value=1.4e+02 Score=21.45 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=35.9
Q ss_pred HhhCCCCCCcccHHHHHHHHHhc----------CCCCcHHHHHHHHhhcC-CCCCCccchHHHHHHHHHH
Q 027591 147 VFLDKNKDGYVSRSEMTQAVTES----------GEGSTGRIAIKRFEEMD-WDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 147 ~~~D~~~~G~Is~~el~~~l~~~----------g~~~~~~~~~~l~~~~d-~~~~g~Is~~eF~~~~~~~ 205 (221)
+.|+..-+-+||++++..+++.- |..++-..+-.++-.-. +.+..-++. .|++-+..+
T Consensus 19 RLYnT~TSTYVTL~dla~mVk~gedF~V~DAKsgeDiT~sVLtQIIfEeE~k~G~~llpi-~fLrQlI~f 87 (193)
T COG5394 19 RLYNTGTSTYVTLEDLAQMVKEGEDFRVQDAKSGEDITHSVLTQIIFEEENKGGQNLLPI-SFLRQLISF 87 (193)
T ss_pred hhcccCCceeeeHHHHHHHHhcCCceEEeeccccchhhHHHHHHHHHHHhccCCCccccH-HHHHHHHHH
Confidence 46788888899999999998863 66677666655544433 334333332 444444443
No 211
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=36.22 E-value=1.1e+02 Score=19.32 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=40.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhh
Q 027591 71 NGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVY 123 (221)
Q Consensus 71 ~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~ 123 (221)
.-.|...+|+..|.......+..+...+-..+|...++.|+.=||-.+...+.
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 45799999999999976555556667788889999999999999888877664
No 212
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=36.13 E-value=60 Score=19.08 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=20.2
Q ss_pred cccHHHHHHHHHhcCCCCcHHHHHHH
Q 027591 156 YVSRSEMTQAVTESGEGSTGRIAIKR 181 (221)
Q Consensus 156 ~Is~~el~~~l~~~g~~~~~~~~~~l 181 (221)
.|+.++|..+|+.....++.+++..+
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 48889999999988777888777654
No 213
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=35.77 E-value=39 Score=16.93 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=10.5
Q ss_pred CCccchHHHHHHHHHH
Q 027591 190 NGMVNFKEFLFAFTRW 205 (221)
Q Consensus 190 ~g~Is~~eF~~~~~~~ 205 (221)
.|.|++++++++..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 4667777777766554
No 214
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.59 E-value=80 Score=17.34 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=22.7
Q ss_pred CCccc-HHHHHHHHHhcCCCCcHHHHHHHHhhc
Q 027591 154 DGYVS-RSEMTQAVTESGEGSTGRIAIKRFEEM 185 (221)
Q Consensus 154 ~G~Is-~~el~~~l~~~g~~~~~~~~~~l~~~~ 185 (221)
.|.|+ ..++...|...|..+++..++.+++.+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 57776 445555556668889999888887764
No 215
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=35.35 E-value=91 Score=22.87 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=30.1
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcC
Q 027591 151 KNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMD 186 (221)
Q Consensus 151 ~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d 186 (221)
.|.+|++..+++.+.++.-+..++.+.+..++..-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 467899999999998876666789999998887744
No 216
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=35.24 E-value=1.3e+02 Score=19.83 Aligned_cols=43 Identities=7% Similarity=0.094 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 157 VSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 157 Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
||.+++..+|...|..+.+..+..+++.+. ..+.++.+.-...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 999999999999999999999999999974 2466666665543
No 217
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=34.55 E-value=63 Score=18.08 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=23.9
Q ss_pred CCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCC
Q 027591 154 DGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWD 188 (221)
Q Consensus 154 ~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~ 188 (221)
.|.|+..+++..+ | ++...+-.+++.+|..
T Consensus 8 ~~~itv~~~rd~l---g--~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLL---G--LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHH---T--S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHH---C--ccHHHHHHHHHHHhcc
Confidence 6889999999988 4 7888888888888743
No 218
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=34.22 E-value=2.3e+02 Score=22.24 Aligned_cols=101 Identities=12% Similarity=0.029 Sum_probs=56.8
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHH
Q 027591 70 SNGTIDHEELKKCFHKL--EIKFTEEE---INDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVD 144 (221)
Q Consensus 70 ~~G~i~~~e~~~~l~~~--~~~~~~~~---~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (221)
-||.++..|+. +...+ ...++.+. +..+|..- .....++.+|+..+...+... +.. ....+..
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~r--~~l------~~~lL~~ 135 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCGGR--FDL------LRMFLEI 135 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhccc--HHH------HHHHHHH
Confidence 48999999987 33432 13455555 55555443 344488999998887655321 110 1122244
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhc-CCCCcHHHHHHHHhh
Q 027591 145 AFVFLDKNKDGYVSRSEMTQAVTES-GEGSTGRIAIKRFEE 184 (221)
Q Consensus 145 ~f~~~D~~~~G~Is~~el~~~l~~~-g~~~~~~~~~~l~~~ 184 (221)
+|..-=. ||.++..|-.-+.+-. ...++..++..+...
T Consensus 136 l~~vA~A--DG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 136 QIQAAFA--DGSLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred HHHHHHh--cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4544333 5778888744333222 233777777776665
No 219
>PHA02105 hypothetical protein
Probab=33.90 E-value=86 Score=18.10 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=31.0
Q ss_pred cccHHHHHHHHHHcC---CCCCHHHHHHHHHhhCCCCC--CcccHHHHHHHHHH
Q 027591 73 TIDHEELKKCFHKLE---IKFTEEEINDLFEACDINKD--MGMKFNEFIVLLCL 121 (221)
Q Consensus 73 ~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~--~~i~~~ef~~~~~~ 121 (221)
.++.++|..++.... ..+..+.+..+-..+..-.- -.++|+||-.++-.
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ 57 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPF 57 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccc
Confidence 467788888776543 34555666666666554433 34889998877654
No 220
>PF03997 VPS28: VPS28 protein; InterPro: IPR007143 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ].; PDB: 2J9W_B 2J9U_C 2G3K_A 2F66_E 2F6M_D 2J9V_A 2CAZ_E 2P22_B.
Probab=33.59 E-value=2e+02 Score=21.33 Aligned_cols=62 Identities=10% Similarity=0.202 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-----CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHH
Q 027591 135 LEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES-----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAF 202 (221)
Q Consensus 135 ~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~-----g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~ 202 (221)
+.+....+......+......+-.+..+.+++..+ +..++++++.+++-.++ -.|..|.+.+
T Consensus 121 LhPlL~dL~~slnr~~~~~~dfe~r~kl~~Wl~~Ln~m~asdeL~e~q~rqllfDle------~aY~~F~~~L 187 (188)
T PF03997_consen 121 LHPLLSDLMQSLNRVTDLPPDFEGRSKLVEWLIKLNGMKASDELSEEQARQLLFDLE------SAYNAFYRSL 187 (188)
T ss_dssp HHHHHHHHHHHHHHCTTS-TT-CCHHHHHHHHHHHHTS-TT-B--HHHHHHHHHHHH------HHHHHHHHCH
T ss_pred HhhHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHH------HHHHHHHHHh
Confidence 34444555555555554334555566666666655 46789999999998886 5677776643
No 221
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=33.55 E-value=1.3e+02 Score=19.36 Aligned_cols=89 Identities=12% Similarity=0.127 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHH
Q 027591 56 LRNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRAL 135 (221)
Q Consensus 56 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 135 (221)
.+.++..|..+-. .|...+++.+++.+| +++.++..+-... .+ +.+.-..++.....
T Consensus 3 ~~~l~~~f~~i~~----~V~~~~Wk~laR~LG--Lse~~I~~i~~~~----~~--~~eq~~qmL~~W~~----------- 59 (96)
T cd08315 3 QETLRRSFDHFIK----EVPFDSWNRLMRQLG--LSENEIDVAKANE----RV--TREQLYQMLLTWVN----------- 59 (96)
T ss_pred HhHHHHHHHHHHH----HCCHHHHHHHHHHcC--CCHHHHHHHHHHC----CC--CHHHHHHHHHHHHH-----------
Confidence 3456677776633 577788888888877 7777777765432 11 13333334433221
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHh
Q 027591 136 EATFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFE 183 (221)
Q Consensus 136 ~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~ 183 (221)
+.|. .-|...|.+.|..++.....+.+...+.
T Consensus 60 ---------------~~G~-~At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 60 ---------------KTGR-KASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred ---------------hhCC-CcHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 1222 3557788888888888888777776543
No 222
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=32.72 E-value=56 Score=28.74 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=37.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 027591 58 NCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLL 119 (221)
Q Consensus 58 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 119 (221)
.+......-....+|..+..+++.+...-........-..+....+....+..++.+++.-.
T Consensus 485 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (566)
T PLN03225 485 WVVFLMAKSGTEKEGGFTEAQLQELREKEPKKKGSAQRNALASALRLQRKGVKTVARTVDEI 546 (566)
T ss_pred HHHHHHHhcCCCCCCCccHHHHHHhhhhcCcchhhhhhhhHHHHHhhhhhhhhhhhhhhhcc
Confidence 34444445556678889999999886543111112222236666677777777877776643
No 223
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=32.17 E-value=1.6e+02 Score=19.68 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=41.2
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 027591 62 IFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCL 121 (221)
Q Consensus 62 ~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 121 (221)
+|-.+-..++..+|.+++..+|...|..+....+..+++.+. + .++.+.+.....
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~--G---Kdi~eLIa~g~~ 60 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE--G---KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc--C---CCHHHHHHHhHh
Confidence 344445566778999999999999999999999988888773 1 556776665443
No 224
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=32.13 E-value=1.5e+02 Score=19.62 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=34.6
Q ss_pred cccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHH
Q 027591 156 YVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFA 201 (221)
Q Consensus 156 ~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~ 201 (221)
.||.+.+..+|...|..+.+..+..++..+. .++.++.+.-
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~-----GkdIeElI~~ 56 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE-----DVNIEEAIKK 56 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHh
Confidence 7999999999999999999999999999884 2566666643
No 225
>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=31.85 E-value=37 Score=26.55 Aligned_cols=29 Identities=10% Similarity=0.322 Sum_probs=19.1
Q ss_pred CCCcccccccCCcccHH------HHHHHHHHHhhh
Q 027591 5 VGKPESATSTWMPETKL------EAKMVEAMQRRA 33 (221)
Q Consensus 5 ~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~ 33 (221)
||+.++++|+|+-.... .++.+..|++++
T Consensus 259 Ita~EAL~HpWi~~r~~~As~~H~~dtvd~lrkfN 293 (355)
T KOG0033|consen 259 ITADEALKHPWICNRERVASAIHRQDTVDCLKKFN 293 (355)
T ss_pred ccHHHHhCCchhcchHHHHHHhhhHHHHHHHHHhh
Confidence 78889999999944322 344555666555
No 226
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=31.59 E-value=95 Score=17.97 Aligned_cols=49 Identities=12% Similarity=0.352 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchH
Q 027591 139 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFK 196 (221)
Q Consensus 139 ~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~ 196 (221)
.+.++.+|.... +.+.++..++.+.| + +++.-+..+++.+. ..|-|.++
T Consensus 7 e~YL~~Iy~l~~--~~~~v~~~~iA~~L---~--vs~~tvt~ml~~L~--~~GlV~~~ 55 (60)
T PF01325_consen 7 EDYLKAIYELSE--EGGPVRTKDIAERL---G--VSPPTVTEMLKRLA--EKGLVEYE 55 (60)
T ss_dssp HHHHHHHHHHHH--CTSSBBHHHHHHHH---T--S-HHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHHHHc--CCCCccHHHHHHHH---C--CChHHHHHHHHHHH--HCCCEEec
Confidence 366777887775 56889999998877 4 88888889988874 45555554
No 227
>PF14164 YqzH: YqzH-like protein
Probab=31.42 E-value=1.2e+02 Score=18.08 Aligned_cols=33 Identities=6% Similarity=-0.017 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhCCC-CCCcccHHHHHHHHHhc
Q 027591 137 ATFETLVDAFVFLDKN-KDGYVSRSEMTQAVTES 169 (221)
Q Consensus 137 ~~~~~~~~~f~~~D~~-~~G~Is~~el~~~l~~~ 169 (221)
+....+..+|+.|-.| ..-.+|..|++.++...
T Consensus 5 ~I~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 5 LIEKMIINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 3456788999999776 66789999888877765
No 228
>PLN02223 phosphoinositide phospholipase C
Probab=31.12 E-value=2.5e+02 Score=24.64 Aligned_cols=67 Identities=6% Similarity=-0.106 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHH---HHcC--CCCCHHHHHHHHHhhCCC--------CCCcccHHHHHHHHHH
Q 027591 55 SLRNCKAIFEKFDEDSNGTIDHEELKKCF---HKLE--IKFTEEEINDLFEACDIN--------KDMGMKFNEFIVLLCL 121 (221)
Q Consensus 55 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l---~~~~--~~~~~~~~~~l~~~~d~~--------~~~~i~~~ef~~~~~~ 121 (221)
....++.+|..+. ++.|.++.+.+..+| .... ...+.++++.++..+-.. ..+.++.+.|..++..
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 5567888898885 567899999999888 4432 345666666666554222 1256999999998876
Q ss_pred h
Q 027591 122 V 122 (221)
Q Consensus 122 ~ 122 (221)
.
T Consensus 93 ~ 93 (537)
T PLN02223 93 T 93 (537)
T ss_pred c
Confidence 3
No 229
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=30.55 E-value=69 Score=19.58 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=13.6
Q ss_pred CCCcccHHHHHHHHHh
Q 027591 153 KDGYVSRSEMTQAVTE 168 (221)
Q Consensus 153 ~~G~Is~~el~~~l~~ 168 (221)
..|.++.+||..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 4799999999999865
No 230
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=30.41 E-value=88 Score=17.73 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=23.3
Q ss_pred CCcccHHHHHHHHHhcCCCCcHHHHHHHHhh
Q 027591 154 DGYVSRSEMTQAVTESGEGSTGRIAIKRFEE 184 (221)
Q Consensus 154 ~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~ 184 (221)
.|.|+.+||..-+.....-.+..++..++..
T Consensus 21 ~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~D 51 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAAYAARTRGELDALFAD 51 (53)
T ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHcc
Confidence 7999999999988776555666677666654
No 231
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=30.24 E-value=3.2e+02 Score=23.00 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=46.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCC
Q 027591 73 TIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKN 152 (221)
Q Consensus 73 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 152 (221)
.+.+..|+.+|.......+--+...+-..+|...++.|+.=||-.+-..+. .+..+..-|+.+-.-
T Consensus 190 ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFq--------------Pw~tllkNWq~Lavt 255 (563)
T KOG1785|consen 190 IVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQ--------------PWKTLLKNWQTLAVT 255 (563)
T ss_pred cccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhc--------------cHHHHHHhhhhhhcc
Confidence 455666666666554333333444555556666666666555555444432 124455556666666
Q ss_pred CCCc---ccHHHHHHHHHhc
Q 027591 153 KDGY---VSRSEMTQAVTES 169 (221)
Q Consensus 153 ~~G~---Is~~el~~~l~~~ 169 (221)
+-|+ +|.+|++.-|..+
T Consensus 256 HPGYmAFLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 256 HPGYMAFLTYDEVKARLQKY 275 (563)
T ss_pred CCceeEEeeHHHHHHHHHHH
Confidence 6664 6777777777665
No 232
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=30.07 E-value=1.6e+02 Score=25.42 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=51.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCC-cccHHHHHHHHHHhhhccCChhHHHHH
Q 027591 57 RNCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDM-GMKFNEFIVLLCLVYLLKDDPTALRAL 135 (221)
Q Consensus 57 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~-~i~~~ef~~~~~~~~~~~~~~~~~~~~ 135 (221)
+..-.+|...-..+...++..+|+.++.++++....++-...|..- .++. .+.|..|+..+..-+..
T Consensus 485 ~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~--a~s~~gv~yl~v~~~i~sel~D---------- 552 (612)
T COG5069 485 RSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDP--AGSVSGVFYLDVLKGIHSELVD---------- 552 (612)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCC--ccccccchHHHHHHHHhhhhcC----------
Confidence 3445566666555566799999999999998877655554555332 2322 46777777777654432
Q ss_pred HHHHHHHHHHHHhhCC
Q 027591 136 EATFETLVDAFVFLDK 151 (221)
Q Consensus 136 ~~~~~~~~~~f~~~D~ 151 (221)
..-++..|..++.
T Consensus 553 ---~d~v~~~~~~f~d 565 (612)
T COG5069 553 ---YDLVTRGFTEFDD 565 (612)
T ss_pred ---hhhhhhhHHHHHH
Confidence 2556666666653
No 233
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=29.56 E-value=1.2e+02 Score=17.65 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=18.3
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 027591 72 GTIDHEELKKCFHKLEIKFTEEEINDLFEA 101 (221)
Q Consensus 72 G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 101 (221)
-.+|.+|+...+..++-.++..++-.++..
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~ 37 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQ 37 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 346666666666666666666665555543
No 234
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=29.38 E-value=1.5e+02 Score=18.72 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHhhCCCCCCccc---HHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 027591 89 KFTEEEINDLFEACDINKDMGMK---FNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQA 165 (221)
Q Consensus 89 ~~~~~~~~~l~~~~d~~~~~~i~---~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~ 165 (221)
.++...+.++..... -..|+ |++....+..+.. +.++.+-....-.+--+|+.+++.-+
T Consensus 13 gi~k~~I~RLarr~G---vkRIS~d~y~e~~~~l~~~l~---------------~I~~dav~ya~Ha~RKTVt~~DV~~a 74 (85)
T cd00076 13 GITKPAIRRLARRGG---VKRISGGVYDEVRNVLKSYLE---------------DVIRDAVTYTEHAKRKTVTAMDVVYA 74 (85)
T ss_pred cCCHHHHHHHHHHcC---cchhhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhcCCCcCcHHHHHHH
Confidence 355666666665543 33454 5555555544321 33444444444556677999999999
Q ss_pred HHhcCCCC
Q 027591 166 VTESGEGS 173 (221)
Q Consensus 166 l~~~g~~~ 173 (221)
++..|.++
T Consensus 75 lkr~g~~~ 82 (85)
T cd00076 75 LKRQGRTL 82 (85)
T ss_pred HHHCCCCc
Confidence 99887554
No 235
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=29.19 E-value=72 Score=20.73 Aligned_cols=49 Identities=14% Similarity=0.017 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 157 VSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 157 Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
+...++.-+|.-+...++++++..+...+-..+...++..+...++++.
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~v 68 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRV 68 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 7777777777777777888888888888754454444555555555544
No 236
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=28.26 E-value=1.2e+02 Score=19.34 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHhcCCCCcHHHHHHHHhhc
Q 027591 157 VSRSEMTQAVTESGEGSTGRIAIKRFEEM 185 (221)
Q Consensus 157 Is~~el~~~l~~~g~~~~~~~~~~l~~~~ 185 (221)
||.+++..+.+.....++++++..+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 56778888777778888888877666654
No 237
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=28.24 E-value=1.1e+02 Score=21.81 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=42.2
Q ss_pred CCCCC-cccHHHHHHHHHhc----CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHh
Q 027591 151 KNKDG-YVSRSEMTQAVTES----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 151 ~~~~G-~Is~~el~~~l~~~----g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~ 206 (221)
...+| .++...+..+|+.+ |-.++.-.+...|..+....-+.|+|++|...+..+.
T Consensus 27 ~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 27 SKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred ccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHH
Confidence 33344 36777888899888 5667888888888888777788999999977776544
No 238
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=27.12 E-value=1e+02 Score=19.19 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=28.5
Q ss_pred HHHhc-CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHh
Q 027591 165 AVTES-GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 165 ~l~~~-g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~ 206 (221)
+|... |-.++++..+.+-+.+.......|++++.+.+.....
T Consensus 37 WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~~a 79 (82)
T PF11020_consen 37 WLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALGVA 79 (82)
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 44443 6667777777776666655666799999888776543
No 239
>PTZ00015 histone H4; Provisional
Probab=27.10 E-value=1.9e+02 Score=19.05 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 027591 90 FTEEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES 169 (221)
Q Consensus 90 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~ 169 (221)
++...+.++........-...-|+|....+..+.. +.++.+-......+--+|+.+++..+++..
T Consensus 31 I~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l~---------------~I~rdav~~aeHA~RKTVt~~DV~~AlKr~ 95 (102)
T PTZ00015 31 ITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFLE---------------NVVRDSTAYTEYARRKTVTAMDVVYALKRQ 95 (102)
T ss_pred CCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhcCCCcccHHHHHHHHHhc
Confidence 44555555555443322222334555555543321 334444444444566779999999999887
Q ss_pred CCC
Q 027591 170 GEG 172 (221)
Q Consensus 170 g~~ 172 (221)
|.+
T Consensus 96 g~~ 98 (102)
T PTZ00015 96 GRT 98 (102)
T ss_pred CCC
Confidence 754
No 240
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.85 E-value=1.4e+02 Score=25.06 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=46.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 027591 58 NCKAIFEKFDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIVLLC 120 (221)
Q Consensus 58 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 120 (221)
.+.++|..+.+- +|+|+-..-+..+. ...++...+-.+++..|.+.+|.++-+||.-.-.
T Consensus 445 ~yde~fy~l~p~-~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefala~h 504 (532)
T KOG1954|consen 445 TYDEIFYTLSPV-NGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFALANH 504 (532)
T ss_pred chHhhhhccccc-CceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHHHHH
Confidence 467778777663 78888777776654 3467888899999999999999999999975433
No 241
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=26.82 E-value=1.4e+02 Score=18.11 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=23.1
Q ss_pred CcccHHHHHHHHHhcCCCCcHHHHHHHHhhcC
Q 027591 155 GYVSRSEMTQAVTESGEGSTGRIAIKRFEEMD 186 (221)
Q Consensus 155 G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d 186 (221)
..-|.+|+...|...|+.+|..-+..-++.+.
T Consensus 18 ~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 18 EISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp ---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 45688999999999999999998888888764
No 242
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=26.69 E-value=1.6e+02 Score=23.13 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=25.0
Q ss_pred CCcccHHHHHHHHHhc--CCCCcHHH---HHHHHhhcCCCCCCccchHHHHHHHHHH
Q 027591 154 DGYVSRSEMTQAVTES--GEGSTGRI---AIKRFEEMDWDKNGMVNFKEFLFAFTRW 205 (221)
Q Consensus 154 ~G~Is~~el~~~l~~~--g~~~~~~~---~~~l~~~~d~~~~g~Is~~eF~~~~~~~ 205 (221)
||.||..|+. +.+.+ ...++++. +..+|.... ....++.+|++.+...
T Consensus 69 DG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k---~~~~~l~~~~~~~~~~ 121 (267)
T PRK09430 69 KGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGK---EPDFPLREKLRQFRSV 121 (267)
T ss_pred CCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHH
Confidence 5777777776 33332 22355555 444444432 2235666666666543
No 243
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=25.47 E-value=2.2e+02 Score=19.16 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=35.7
Q ss_pred hcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 027591 66 FDEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFNEFIV 117 (221)
Q Consensus 66 ~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 117 (221)
+--.++..+|.+++..+|...|..+...++..+++.+.- .++.+.+.
T Consensus 10 ~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 10 AVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 334456679999999999999999999888888877731 45566553
No 244
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=25.46 E-value=98 Score=19.24 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhh
Q 027591 161 EMTQAVTESGEGSTGRIAIKRFEE 184 (221)
Q Consensus 161 el~~~l~~~g~~~~~~~~~~l~~~ 184 (221)
|+..+|+.+|.++++++..-+-..
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~~ 44 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEAH 44 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHH
Confidence 677888889999999887655443
No 245
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=25.20 E-value=1.3e+02 Score=16.59 Aligned_cols=39 Identities=31% Similarity=0.316 Sum_probs=30.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhc
Q 027591 140 ETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEM 185 (221)
Q Consensus 140 ~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~ 185 (221)
..+...|.. +.+.+..++..+...+| ++...|...|...
T Consensus 13 ~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~nr 51 (59)
T cd00086 13 EELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQNR 51 (59)
T ss_pred HHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHHH
Confidence 556666665 56899999999998888 8888888888653
No 246
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=25.16 E-value=1.5e+02 Score=17.34 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=14.1
Q ss_pred CcccHHHHHHHHHhc-CCCCcHHHHHHHHhhc
Q 027591 155 GYVSRSEMTQAVTES-GEGSTGRIAIKRFEEM 185 (221)
Q Consensus 155 G~Is~~el~~~l~~~-g~~~~~~~~~~l~~~~ 185 (221)
..+|.+|...++..+ ...+++.++..++..+
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al 44 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVSDAQIAAFLMAL 44 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 346666666666555 3345555555555444
No 247
>PF13592 HTH_33: Winged helix-turn helix
Probab=25.05 E-value=1.5e+02 Score=17.05 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=22.8
Q ss_pred CcccHHHHHHHHHhc-CCCCcHHHHHHHHhhcC
Q 027591 155 GYVSRSEMTQAVTES-GEGSTGRIAIKRFEEMD 186 (221)
Q Consensus 155 G~Is~~el~~~l~~~-g~~~~~~~~~~l~~~~d 186 (221)
+..+..++...+... |...+..-+..+++.++
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G 35 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLG 35 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHcC
Confidence 556677777766554 77778878888877765
No 248
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=24.70 E-value=1.9e+02 Score=18.28 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=37.9
Q ss_pred CCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHh
Q 027591 153 KDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWC 206 (221)
Q Consensus 153 ~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~ 206 (221)
++|+|+.++...+.. .+.+.+.+..++..+ ...|..-.+-|+.++....
T Consensus 26 ~n~~it~E~y~~V~a---~~T~qdkmRkLld~v--~akG~~~k~~F~~iL~e~~ 74 (85)
T cd08324 26 KNDYFSTEDAEIVCA---CPTQPDKVRKILDLV--QSKGEEVSEYFLYLLQQLA 74 (85)
T ss_pred ccCCccHHHHHHHHh---CCCCHHHHHHHHHHH--HhcCchHHHHHHHHHHHHH
Confidence 579999999988774 457888999999886 4566677777888877653
No 249
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=24.56 E-value=1.7e+02 Score=19.51 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHhc--CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 157 VSRSEMTQAVTES--GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 157 Is~~el~~~l~~~--g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
+|-.++...+... ..++|.+.+...+..- .+||.+|...++.
T Consensus 67 vsd~evd~~i~~ia~~n~ls~~ql~~~L~~~------G~s~~~~r~~ir~ 110 (118)
T PF09312_consen 67 VSDEEVDEAIANIAKQNNLSVEQLRQQLEQQ------GISYEEYREQIRK 110 (118)
T ss_dssp --HHHHHHHHHHHHHHTT--HHHHHHHCHHC------T--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHc------CCCHHHHHHHHHH
Confidence 4555555555444 2335665555555542 2677777777654
No 250
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=24.53 E-value=1.2e+02 Score=16.58 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=17.5
Q ss_pred cHHHHHHHHHhcCCCCcHHHH
Q 027591 158 SRSEMTQAVTESGEGSTGRIA 178 (221)
Q Consensus 158 s~~el~~~l~~~g~~~~~~~~ 178 (221)
+.+++..+.+..|..+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 778888888888999988765
No 251
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=23.99 E-value=2e+02 Score=18.26 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=35.0
Q ss_pred CCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 154 DGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 154 ~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
.|.||.++...+-. ...+.+....++..+. ..|.-.|..|+.++..
T Consensus 32 ~gvlt~~~~~~I~~---~~t~~~k~~~Lld~L~--~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 32 KDILTDSMAESIMA---KPTSFSQNVALLNLLP--KRGPRAFSAFCEALRE 77 (90)
T ss_pred cCCCCHHHHHHHHc---CCCcHHHHHHHHHHHH--HhChhHHHHHHHHHHh
Confidence 68999988777663 3356777888888874 5667889999998864
No 252
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=23.97 E-value=1.9e+02 Score=17.98 Aligned_cols=47 Identities=11% Similarity=0.081 Sum_probs=37.4
Q ss_pred CCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 153 KDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 153 ~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
+.|.||.++...+.. ...+.+.+..++..+. ..|...+.-|+..+..
T Consensus 26 ~~~Vit~e~~~~I~a---~~T~~~kar~Lld~l~--~kG~~A~~~F~~~L~e 72 (82)
T cd08330 26 GKKVITQEQYSEVRA---EKTNQEKMRKLFSFVR--SWGASCKDIFYQILRE 72 (82)
T ss_pred HCCCCCHHHHHHHHc---CCCcHHHHHHHHHHHH--ccCHHHHHHHHHHHHH
Confidence 468999998888764 3467888899998885 4788899999998864
No 253
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=23.91 E-value=1.3e+02 Score=25.33 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=42.2
Q ss_pred CCCCcccHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 027591 105 NKDMGMKFNEFIVLLCLVYLLKDDPTALRALEATFETLVDAFVFLDKNKDGYVSRSEMTQAVTES 169 (221)
Q Consensus 105 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~ 169 (221)
.|+...+-.|||......+... ..+..++.++.+-+.+|-|.+|.|+++|--.+++.-
T Consensus 40 agds~at~nefc~~~~~~c~s~-------~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEd 97 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSE-------QDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRED 97 (575)
T ss_pred cCCchhhhccchhcCCchhhcc-------cchhhHHHHHHHHHhcccccCCCcccccchHHHHHH
Confidence 5666677788877665444321 123346788889999999999999999988888764
No 254
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=23.81 E-value=1.9e+02 Score=18.56 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=15.7
Q ss_pred HHHHHHhcCCCCcHHHHHHHHhhcCC-----CCCCccchHHHHH
Q 027591 162 MTQAVTESGEGSTGRIAIKRFEEMDW-----DKNGMVNFKEFLF 200 (221)
Q Consensus 162 l~~~l~~~g~~~~~~~~~~l~~~~d~-----~~~g~Is~~eF~~ 200 (221)
++.+|+..|..++.+.+..++..++. -..|.|+.+.+.+
T Consensus 14 Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~k 57 (90)
T PF02337_consen 14 LKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKK 57 (90)
T ss_dssp HHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHH
T ss_pred HHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHH
Confidence 34444444666666655555555431 2345555555444
No 255
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=23.79 E-value=1.6e+02 Score=18.71 Aligned_cols=30 Identities=10% Similarity=0.006 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHhcCCCCcHHHHHHHHhhc
Q 027591 156 YVSRSEMTQAVTESGEGSTGRIAIKRFEEM 185 (221)
Q Consensus 156 ~Is~~el~~~l~~~g~~~~~~~~~~l~~~~ 185 (221)
.|+.+++..+.+.....++++++..+...+
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 378888888888888889988887776665
No 256
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=23.69 E-value=1.1e+02 Score=15.27 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=12.6
Q ss_pred cccHHHHHHHHHhcCCCCc
Q 027591 156 YVSRSEMTQAVTESGEGST 174 (221)
Q Consensus 156 ~Is~~el~~~l~~~g~~~~ 174 (221)
.++..+++..|+..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4667777777777765543
No 257
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=23.68 E-value=40 Score=20.82 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=30.0
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCcccHH
Q 027591 69 DSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACDINKDMGMKFN 113 (221)
Q Consensus 69 ~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ 113 (221)
+.+|.-...+|-++|..+|....+..++.+++.+. .+.|.+.++
T Consensus 36 ~dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSMt-R~tgF~E~~ 79 (88)
T PF15144_consen 36 DDSGKNPEPDFPKFLNLLGTEIIENAVEFILRSMT-RSTGFMEFE 79 (88)
T ss_pred cccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhh-cccCceecC
Confidence 44566666678888888887777777877777763 445555443
No 258
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=23.66 E-value=1.4e+02 Score=22.76 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=36.2
Q ss_pred cHHHHHHHHHhc----CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 158 SRSEMTQAVTES----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 158 s~~el~~~l~~~----g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
+.++++.++... ++.+++.++..+...+..-.+-.+++.+|..-+..
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~~ 223 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLNN 223 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888777654 88899999998888877666667888888776643
No 259
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=23.06 E-value=2e+02 Score=17.94 Aligned_cols=44 Identities=5% Similarity=0.027 Sum_probs=28.5
Q ss_pred cHHHHHHHHHhc----CCCCcHHHHHHHHhhcCCCCCCccchHHHHHHH
Q 027591 158 SRSEMTQAVTES----GEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAF 202 (221)
Q Consensus 158 s~~el~~~l~~~----g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~ 202 (221)
+...++++++.. |.+++++..+.++..+-.++- ..++..+..+|
T Consensus 29 dE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~ 76 (79)
T PF14069_consen 29 DEKKVRQLIKQVSQIANKPVSKEQEDQIVQAIINQKI-PNDMNHLMKMM 76 (79)
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHH
Confidence 444566666554 888888888888888754443 45555555554
No 260
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=22.99 E-value=1.8e+02 Score=17.28 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCCCCCccc
Q 027591 176 RIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCGVGENEDEEE 216 (221)
Q Consensus 176 ~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~~~~~~~~~~ 216 (221)
+.+..+...+..-..-.|.|.+..+.+..+.+..++....+
T Consensus 7 eIA~~L~e~~pd~dp~~vrFtdL~~wV~~L~~FdDdp~~~~ 47 (63)
T TIGR03412 7 EIAIALAEAHPDVDPKTVRFTDLHQWVLELPGFDDDPKRCN 47 (63)
T ss_pred HHHHHHHHHCCCCCcceeeHHHHHHHHHhCcCcCCCccccc
Confidence 34455555555444456777787777777777665544433
No 261
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=22.73 E-value=2.4e+02 Score=18.76 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=37.3
Q ss_pred cccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 156 YVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 156 ~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
.||.+.+..++...|..+.+..+..++..+. | ++.++.+.-...
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLe----g-~~idE~i~~~~~ 59 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALE----G-VDIDEVIKNAAE 59 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc----C-CCHHHHHHHhcc
Confidence 8999999999999999999999999999985 2 477777665544
No 262
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.72 E-value=1.3e+02 Score=25.14 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=42.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHH
Q 027591 142 LVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFA 201 (221)
Q Consensus 142 ~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~ 201 (221)
...+|..+.+- +|+||...-+.-+- +.+++...+-.+.+..|.+.||.++-++|.-.
T Consensus 446 yde~fy~l~p~-~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLSPV-NGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhccccc-CceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 44566666543 58888776665554 34588889999999999999999999999753
No 263
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=22.71 E-value=1.1e+02 Score=15.42 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=11.7
Q ss_pred cccHHHHHHHHHhcCCCCc
Q 027591 156 YVSRSEMTQAVTESGEGST 174 (221)
Q Consensus 156 ~Is~~el~~~l~~~g~~~~ 174 (221)
.++..|++..|+..|.+.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 3566777777777765443
No 264
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=22.62 E-value=2.4e+02 Score=18.57 Aligned_cols=43 Identities=7% Similarity=0.029 Sum_probs=35.1
Q ss_pred CcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHH
Q 027591 155 GYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAF 202 (221)
Q Consensus 155 G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~ 202 (221)
-.+|.+++..++...|..+.+..+..+++.+. ..+..+++.-.
T Consensus 16 ~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~-----gk~i~elIa~~ 58 (103)
T cd05831 16 IEITADNINALLKAAGVNVEPYWPGLFAKALE-----GKDIKDLLSNV 58 (103)
T ss_pred CCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc-----CCCHHHHhhcc
Confidence 46999999999999999999999988888874 25667777554
No 265
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=22.54 E-value=1.5e+02 Score=19.74 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=13.5
Q ss_pred cHHHHHHHHHhcCCCCcHHHHHHHHhh
Q 027591 158 SRSEMTQAVTESGEGSTGRIAIKRFEE 184 (221)
Q Consensus 158 s~~el~~~l~~~g~~~~~~~~~~l~~~ 184 (221)
|.+|++.++......+++++++.++..
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 344555555554444555555555443
No 266
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.41 E-value=4.6e+02 Score=21.80 Aligned_cols=52 Identities=21% Similarity=0.320 Sum_probs=28.6
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHH-HHHHHhhCCCCCCcccHHHHHHHHHHhhh
Q 027591 71 NGTIDHEELKKCFHKLEIKFTEEEI-NDLFEACDINKDMGMKFNEFIVLLCLVYL 124 (221)
Q Consensus 71 ~G~i~~~e~~~~l~~~~~~~~~~~~-~~l~~~~d~~~~~~i~~~ef~~~~~~~~~ 124 (221)
...+++++|...|.. +-. +.+.+ ..|-..-+.=-.-++-|.||+..+..+..
T Consensus 5 ~~~~~LeeLe~kLa~-~d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~ 57 (379)
T PF11593_consen 5 TPNLKLEELEEKLAS-NDN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEE 57 (379)
T ss_pred cCCCcHHHHHHHHhc-CCc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Confidence 345677777777653 222 33333 33332222222346788888888887744
No 267
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=22.32 E-value=1.7e+02 Score=21.51 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=23.9
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 027591 67 DEDSNGTIDHEELKKCFHKLEIKFTEEEINDLFEACD 103 (221)
Q Consensus 67 D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 103 (221)
..+.+|.+...++...+..-+..++.+.+..+....+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4567999999999999887777788899988887643
No 268
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.26 E-value=1.2e+02 Score=20.43 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=23.7
Q ss_pred ccHHHHHHHHHhcCCCCcHHHHHHHHhhcC
Q 027591 157 VSRSEMTQAVTESGEGSTGRIAIKRFEEMD 186 (221)
Q Consensus 157 Is~~el~~~l~~~g~~~~~~~~~~l~~~~d 186 (221)
-|..|++.++...+..+++++++.++.-.+
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 467788888888888888888888876543
No 269
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=22.18 E-value=1.7e+02 Score=20.45 Aligned_cols=48 Identities=8% Similarity=-0.082 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCC-----CCccchHHHHHHHHH
Q 027591 157 VSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDK-----NGMVNFKEFLFAFTR 204 (221)
Q Consensus 157 Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~-----~g~Is~~eF~~~~~~ 204 (221)
.|+++++.+......++|++++..++..++.-+ +-.|+..--...+..
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~~~~~~~~~GVs~~~V~el~~~ 79 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGDIPEDQRHEEGVSSGTVMELIRE 79 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCccccchhccccHHHHHHHHHH
Confidence 577888888776667788888888888887432 124665555555444
No 270
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=21.83 E-value=3.7e+02 Score=24.66 Aligned_cols=62 Identities=8% Similarity=-0.047 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhc
Q 027591 139 FETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTRWCG 207 (221)
Q Consensus 139 ~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~~~~ 207 (221)
....+.+|+..-+.+.-++..+.+..+ +.+++++..+..++...++.|++..|...+.....
T Consensus 403 ~~aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~~ 464 (714)
T KOG4629|consen 403 KIAARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWIVNIYR 464 (714)
T ss_pred HHHHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHHHHHHH
Confidence 355677888888777778888777665 56788888888888767777999999988776543
No 271
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=21.73 E-value=82 Score=23.24 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHH
Q 027591 138 TFETLVDAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRF 182 (221)
Q Consensus 138 ~~~~~~~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~ 182 (221)
.++.++.+|..||+.+=-..+.+++.++|...|+--....+...+
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 448899999999999988899999999998887654444444443
No 272
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=21.51 E-value=2e+02 Score=24.52 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhhhccCChhHHHH---------------------HHHHHHHHHHHHHhhC
Q 027591 92 EEEINDLFEACDINKDMGMKFNEFIVLLCLVYLLKDDPTALRA---------------------LEATFETLVDAFVFLD 150 (221)
Q Consensus 92 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~f~~~D 150 (221)
...+..++ .+.....+.-+++||...+.. .+|...+. ++..-..+..+--.||
T Consensus 288 ~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~-----~~p~L~~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL~~M~FD 361 (445)
T PF13608_consen 288 EDEIEHLY-MLCKKHGKLPTEEEFLEYVEE-----VNPELLEFAEEMIEEEEVEHQAKTASEKNLEKIIAFVALLMMMFD 361 (445)
T ss_pred HHHHHHHH-HHHHHhCCCCCHHHHHHHHHh-----cCchHHHHHHHHhCCCcEEecCCChHHHHHHHHHHHHHHHHHHhC
Q ss_pred CCCCCcccHH--HHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchH
Q 027591 151 KNKDGYVSRS--EMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFK 196 (221)
Q Consensus 151 ~~~~G~Is~~--el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~ 196 (221)
.+++..|-+- -|+.++..+|..+.-+-++.+....+ +.+..|+|+
T Consensus 362 ~ERSD~VyKiLnKlK~v~st~~~~V~hQSLDdi~~~~e-eK~lTIDFe 408 (445)
T PF13608_consen 362 AERSDCVYKILNKLKGVFSTMGQDVRHQSLDDIEDIFE-EKNLTIDFE 408 (445)
T ss_pred chhhHHHHHHHHHHHHHHhccCCCccCCCccchhhhhh-hhcceeEEE
No 273
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=21.22 E-value=2.4e+02 Score=18.17 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=36.7
Q ss_pred CCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q 027591 153 KDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMDWDKNGMVNFKEFLFAFTR 204 (221)
Q Consensus 153 ~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~Is~~eF~~~~~~ 204 (221)
+.|.||.++...+-. ...+.+.+..++..+. ..|.-.|..|+.++..
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiLp--~RG~~AF~~F~~aL~e 78 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDILP--SRGPKAFHAFLDSLEE 78 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHHH--hhChhHHHHHHHHHHH
Confidence 478999998888763 3466778888888874 5677899999999875
No 274
>PRK00441 argR arginine repressor; Provisional
Probab=21.15 E-value=2.3e+02 Score=20.06 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=33.9
Q ss_pred CCcccHHHHHHHHHhcCCCCcHHHHHHHHhhcC----CCCCCccch
Q 027591 154 DGYVSRSEMTQAVTESGEGSTGRIAIKRFEEMD----WDKNGMVNF 195 (221)
Q Consensus 154 ~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~d----~~~~g~Is~ 195 (221)
.+..+.+|+...|...|..+|..-+..-++.+. ++.+|..-|
T Consensus 16 ~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~lvKv~~~~G~~~Y 61 (149)
T PRK00441 16 KEIETQEELAEELKKMGFDVTQATVSRDIKELKLIKVLSNDGKYKY 61 (149)
T ss_pred cCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcCcEEeECCCCCEEE
Confidence 578899999999999999999999988888765 356665433
No 275
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=20.82 E-value=1.3e+02 Score=25.86 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=45.2
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCCCCcHHHHHHHHhhc---C----CC-CCCccchHHHHHHHHH
Q 027591 144 DAFVFLDKNKDGYVSRSEMTQAVTESGEGSTGRIAIKRFEEM---D----WD-KNGMVNFKEFLFAFTR 204 (221)
Q Consensus 144 ~~f~~~D~~~~G~Is~~el~~~l~~~g~~~~~~~~~~l~~~~---d----~~-~~g~Is~~eF~~~~~~ 204 (221)
.+|..|-...++.++..-|..+|++.|+.-++-.+..++..+ + .. .-+.++.+-|.+++..
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 457777545569999999999999999988888888777665 2 12 2346788888877643
No 276
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=20.57 E-value=2e+02 Score=16.90 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=9.8
Q ss_pred CCCCcHHHHHHHHhhcC
Q 027591 170 GEGSTGRIAIKRFEEMD 186 (221)
Q Consensus 170 g~~~~~~~~~~l~~~~d 186 (221)
|..++.+++..++..+.
T Consensus 16 G~~i~~~ei~~~L~~lg 32 (71)
T smart00874 16 GLDLSAEEIEEILKRLG 32 (71)
T ss_pred CCCCCHHHHHHHHHHCC
Confidence 55556656666655554
Done!