Query 027592
Match_columns 221
No_of_seqs 189 out of 1795
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 12:14:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 4.6E-30 9.9E-35 187.7 17.4 147 71-220 11-157 (160)
2 KOG0027 Calmodulin and related 100.0 1.3E-27 2.8E-32 177.4 17.3 145 74-220 2-150 (151)
3 PTZ00183 centrin; Provisional 99.9 3.3E-24 7.3E-29 160.0 17.7 147 73-221 10-156 (158)
4 KOG0028 Ca2+-binding protein ( 99.9 1.6E-24 3.4E-29 155.3 15.0 144 74-219 27-170 (172)
5 PTZ00184 calmodulin; Provision 99.9 2.2E-23 4.8E-28 153.8 17.3 145 73-219 4-148 (149)
6 KOG0031 Myosin regulatory ligh 99.9 5.2E-23 1.1E-27 146.5 15.9 141 73-219 25-165 (171)
7 KOG0030 Myosin essential light 99.9 6E-23 1.3E-27 143.8 12.4 142 74-218 5-150 (152)
8 KOG0037 Ca2+-binding protein, 99.9 3.8E-21 8.3E-26 145.1 16.6 133 79-219 56-188 (221)
9 KOG0034 Ca2+/calmodulin-depend 99.8 9.8E-20 2.1E-24 137.8 16.0 145 72-221 25-177 (187)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 5.3E-19 1.1E-23 133.9 13.7 144 73-220 22-176 (193)
11 KOG0036 Predicted mitochondria 99.8 3.7E-17 8.1E-22 133.7 15.7 141 74-221 8-148 (463)
12 PLN02964 phosphatidylserine de 99.6 4.4E-14 9.6E-19 124.6 14.5 121 72-199 135-273 (644)
13 KOG4223 Reticulocalbin, calume 99.5 3.9E-14 8.4E-19 113.1 10.0 137 78-215 161-301 (325)
14 KOG4223 Reticulocalbin, calume 99.5 1.4E-13 3.1E-18 109.9 10.0 142 77-219 74-228 (325)
15 cd05022 S-100A13 S-100A13: S-1 99.4 4.6E-13 9.9E-18 89.7 7.4 66 153-219 7-75 (89)
16 PF13499 EF-hand_7: EF-hand do 99.4 8.5E-13 1.8E-17 83.8 7.4 62 155-217 1-66 (66)
17 KOG0038 Ca2+-binding kinase in 99.4 8.6E-12 1.9E-16 88.6 11.1 146 71-221 19-179 (189)
18 KOG0027 Calmodulin and related 99.4 7.9E-12 1.7E-16 92.6 11.3 104 116-220 7-114 (151)
19 PTZ00183 centrin; Provisional 99.3 2.3E-11 4.9E-16 90.4 12.3 103 116-219 16-118 (158)
20 cd05027 S-100B S-100B: S-100B 99.3 7.8E-12 1.7E-16 83.8 8.2 66 153-219 7-79 (88)
21 PF13499 EF-hand_7: EF-hand do 99.3 6.5E-12 1.4E-16 79.7 7.4 62 81-143 1-66 (66)
22 cd05022 S-100A13 S-100A13: S-1 99.3 7E-12 1.5E-16 84.0 7.8 67 77-144 5-74 (89)
23 KOG0377 Protein serine/threoni 99.3 2.5E-11 5.4E-16 100.6 11.6 138 79-219 463-615 (631)
24 PTZ00184 calmodulin; Provision 99.3 4.9E-11 1.1E-15 87.6 12.2 102 117-219 11-112 (149)
25 COG5126 FRQ1 Ca2+-binding prot 99.3 7E-11 1.5E-15 86.9 12.1 104 114-219 14-120 (160)
26 cd05027 S-100B S-100B: S-100B 99.3 3.1E-11 6.7E-16 80.9 8.7 67 77-144 5-78 (88)
27 smart00027 EH Eps15 homology d 99.2 6.3E-11 1.4E-15 81.0 8.9 69 73-144 3-71 (96)
28 cd05029 S-100A6 S-100A6: S-100 99.2 4.6E-11 1E-15 80.1 8.0 65 154-219 10-79 (88)
29 KOG0037 Ca2+-binding protein, 99.2 4.7E-11 1E-15 90.7 8.7 126 78-218 92-219 (221)
30 cd05031 S-100A10_like S-100A10 99.2 6.7E-11 1.5E-15 80.5 8.0 66 153-219 7-79 (94)
31 KOG0044 Ca2+ sensor (EF-Hand s 99.2 3.1E-10 6.8E-15 86.3 12.4 120 96-219 8-128 (193)
32 cd05025 S-100A1 S-100A1: S-100 99.2 9.6E-11 2.1E-15 79.4 8.1 67 153-219 8-80 (92)
33 cd05026 S-100Z S-100Z: S-100Z 99.2 1.2E-10 2.6E-15 79.0 8.3 66 154-219 10-81 (93)
34 PF13833 EF-hand_8: EF-hand do 99.2 8.5E-11 1.8E-15 71.5 6.1 52 167-219 1-53 (54)
35 smart00027 EH Eps15 homology d 99.2 1.9E-10 4.1E-15 78.6 8.2 65 152-219 8-72 (96)
36 KOG0028 Ca2+-binding protein ( 99.2 5.4E-10 1.2E-14 80.9 10.4 101 117-219 33-134 (172)
37 cd05029 S-100A6 S-100A6: S-100 99.2 2.8E-10 6.1E-15 76.3 8.5 67 77-144 7-78 (88)
38 cd00052 EH Eps15 homology doma 99.2 1.7E-10 3.7E-15 73.2 7.1 60 157-219 2-61 (67)
39 PLN02964 phosphatidylserine de 99.1 2.2E-10 4.7E-15 101.5 9.9 127 85-219 112-243 (644)
40 cd00213 S-100 S-100: S-100 dom 99.1 2.9E-10 6.2E-15 76.4 8.0 68 77-144 5-78 (88)
41 cd05031 S-100A10_like S-100A10 99.1 3.3E-10 7.1E-15 77.1 8.4 67 77-144 5-78 (94)
42 cd05025 S-100A1 S-100A1: S-100 99.1 4.6E-10 1E-14 76.1 8.6 66 78-144 7-79 (92)
43 cd05026 S-100Z S-100Z: S-100Z 99.1 5.9E-10 1.3E-14 75.6 8.7 67 77-144 7-80 (93)
44 cd00213 S-100 S-100: S-100 dom 99.1 3.8E-10 8.2E-15 75.8 7.7 66 153-219 7-79 (88)
45 KOG4251 Calcium binding protei 99.1 1.8E-10 4E-15 88.9 6.4 138 78-216 99-261 (362)
46 KOG0040 Ca2+-binding actin-bun 99.1 2.5E-09 5.5E-14 99.4 13.6 138 71-218 2244-2397(2399)
47 cd05023 S-100A11 S-100A11: S-1 99.1 9.4E-10 2E-14 73.8 8.0 67 153-219 8-80 (89)
48 KOG2562 Protein phosphatase 2 99.1 1.9E-09 4.1E-14 90.2 11.0 144 67-215 265-420 (493)
49 cd00051 EFh EF-hand, calcium b 99.1 1.6E-09 3.4E-14 67.0 8.2 61 156-217 2-62 (63)
50 cd00252 SPARC_EC SPARC_EC; ext 99.0 1.3E-09 2.8E-14 76.6 7.7 63 151-218 45-107 (116)
51 cd00052 EH Eps15 homology doma 99.0 1.4E-09 2.9E-14 69.0 7.1 59 83-144 2-60 (67)
52 KOG0034 Ca2+/calmodulin-depend 99.0 3.7E-09 8.1E-14 80.3 10.5 102 82-183 68-176 (187)
53 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.5E-09 5.5E-14 75.1 8.2 63 76-143 44-106 (116)
54 cd00051 EFh EF-hand, calcium b 99.0 3.2E-09 6.9E-14 65.5 7.5 61 82-143 2-62 (63)
55 KOG2643 Ca2+ binding protein, 99.0 3.1E-09 6.6E-14 88.3 9.0 136 78-219 316-453 (489)
56 cd05023 S-100A11 S-100A11: S-1 98.9 7.3E-09 1.6E-13 69.5 8.6 67 77-144 6-79 (89)
57 KOG0041 Predicted Ca2+-binding 98.9 8.3E-09 1.8E-13 77.4 8.8 109 73-182 92-203 (244)
58 cd05030 calgranulins Calgranul 98.9 7.8E-09 1.7E-13 69.3 7.1 66 153-219 7-79 (88)
59 PF13833 EF-hand_8: EF-hand do 98.9 8.4E-09 1.8E-13 62.6 6.4 52 93-144 1-52 (54)
60 PF14658 EF-hand_9: EF-hand do 98.8 1.7E-08 3.7E-13 62.8 6.4 59 85-144 3-63 (66)
61 PF14658 EF-hand_9: EF-hand do 98.8 2.2E-08 4.8E-13 62.3 6.8 62 158-219 2-64 (66)
62 KOG2643 Ca2+ binding protein, 98.8 3.8E-08 8.3E-13 81.9 10.2 133 80-218 233-383 (489)
63 cd05030 calgranulins Calgranul 98.8 3.2E-08 6.9E-13 66.4 7.6 67 77-144 5-78 (88)
64 KOG0036 Predicted mitochondria 98.8 7E-08 1.5E-12 79.9 11.0 98 116-219 13-110 (463)
65 KOG0041 Predicted Ca2+-binding 98.8 3.1E-08 6.7E-13 74.4 7.1 67 152-219 97-163 (244)
66 PF12763 EF-hand_4: Cytoskelet 98.6 2.3E-07 5E-12 63.9 6.8 68 73-144 3-70 (104)
67 PF00036 EF-hand_1: EF hand; 98.6 7.3E-08 1.6E-12 50.4 3.2 26 156-181 2-27 (29)
68 KOG1029 Endocytic adaptor prot 98.5 1.7E-06 3.7E-11 76.7 11.6 139 74-219 10-257 (1118)
69 PF00036 EF-hand_1: EF hand; 98.5 2.1E-07 4.7E-12 48.6 3.8 29 81-109 1-29 (29)
70 KOG0031 Myosin regulatory ligh 98.5 8.4E-07 1.8E-11 64.1 7.9 66 78-144 99-164 (171)
71 PF12763 EF-hand_4: Cytoskelet 98.5 9.1E-07 2E-11 60.9 7.4 66 150-219 6-71 (104)
72 KOG4666 Predicted phosphate ac 98.4 4.2E-07 9.1E-12 73.2 6.0 121 93-220 240-360 (412)
73 cd05024 S-100A10 S-100A10: A s 98.4 2.4E-06 5.3E-11 57.0 8.4 64 154-219 8-76 (91)
74 KOG0038 Ca2+-binding kinase in 98.4 1.5E-06 3.3E-11 62.2 7.7 97 87-183 78-178 (189)
75 KOG0169 Phosphoinositide-speci 98.4 7.3E-06 1.6E-10 73.0 13.2 137 76-218 132-273 (746)
76 cd05024 S-100A10 S-100A10: A s 98.4 4.4E-06 9.5E-11 55.7 8.9 66 77-144 5-75 (91)
77 PRK12309 transaldolase/EF-hand 98.4 2.5E-06 5.4E-11 72.2 9.4 103 97-219 282-385 (391)
78 PF13405 EF-hand_6: EF-hand do 98.3 6E-07 1.3E-11 47.8 3.3 30 155-184 1-31 (31)
79 PF13405 EF-hand_6: EF-hand do 98.3 9.1E-07 2E-11 47.1 3.7 30 81-110 1-31 (31)
80 KOG0030 Myosin essential light 98.3 1.2E-05 2.7E-10 57.1 9.9 105 114-219 8-116 (152)
81 KOG4251 Calcium binding protei 98.2 2.6E-06 5.6E-11 66.2 6.0 136 80-216 198-342 (362)
82 KOG0751 Mitochondrial aspartat 98.2 3.5E-05 7.6E-10 65.6 12.2 104 77-183 33-137 (694)
83 PRK12309 transaldolase/EF-hand 98.1 1.7E-05 3.8E-10 67.2 8.8 59 110-183 328-386 (391)
84 KOG0046 Ca2+-binding actin-bun 98.1 1.8E-05 4E-10 67.7 8.1 77 68-145 7-85 (627)
85 PF13202 EF-hand_5: EF hand; P 98.1 4.2E-06 9.2E-11 42.1 2.7 23 157-179 2-24 (25)
86 KOG2562 Protein phosphatase 2 98.0 4.1E-05 9E-10 64.7 9.3 134 80-218 225-378 (493)
87 PF14788 EF-hand_10: EF hand; 98.0 3.3E-05 7.1E-10 45.4 5.6 48 171-219 2-49 (51)
88 PF13202 EF-hand_5: EF hand; P 98.0 1.2E-05 2.6E-10 40.4 3.2 24 82-105 1-24 (25)
89 KOG0377 Protein serine/threoni 97.9 4E-05 8.6E-10 64.5 7.6 63 81-143 548-613 (631)
90 PF10591 SPARC_Ca_bdg: Secrete 97.9 4.5E-06 9.8E-11 58.5 1.1 62 77-141 51-112 (113)
91 KOG0751 Mitochondrial aspartat 97.8 4.2E-05 9.1E-10 65.1 6.5 124 82-214 110-239 (694)
92 PF14788 EF-hand_10: EF hand; 97.8 9E-05 1.9E-09 43.6 5.6 46 97-143 2-47 (51)
93 PF10591 SPARC_Ca_bdg: Secrete 97.8 1.1E-05 2.4E-10 56.5 1.7 64 150-216 50-113 (113)
94 KOG1707 Predicted Ras related/ 97.7 0.00038 8.2E-09 60.8 9.4 149 67-218 182-376 (625)
95 PF09279 EF-hand_like: Phospho 97.6 0.00019 4.2E-09 47.3 6.0 64 155-219 1-69 (83)
96 KOG4666 Predicted phosphate ac 97.6 0.00015 3.4E-09 58.7 5.5 105 78-184 257-361 (412)
97 KOG4065 Uncharacterized conser 97.5 0.00035 7.5E-09 48.2 6.1 59 158-216 71-142 (144)
98 KOG0040 Ca2+-binding actin-bun 97.5 0.00026 5.5E-09 67.4 7.0 67 153-220 2252-2325(2399)
99 KOG4065 Uncharacterized conser 97.5 0.00082 1.8E-08 46.3 7.4 73 68-142 57-142 (144)
100 KOG1955 Ral-GTPase effector RA 97.4 0.00051 1.1E-08 58.7 6.5 70 73-145 224-293 (737)
101 PF05042 Caleosin: Caleosin re 97.3 0.0032 6.9E-08 46.9 9.1 133 81-216 8-163 (174)
102 KOG1029 Endocytic adaptor prot 97.3 0.0013 2.8E-08 59.1 8.0 69 73-144 188-256 (1118)
103 KOG0046 Ca2+-binding actin-bun 97.3 0.001 2.2E-08 57.3 7.1 65 153-218 18-84 (627)
104 smart00054 EFh EF-hand, calciu 97.1 0.00077 1.7E-08 33.9 3.1 25 157-181 3-27 (29)
105 smart00054 EFh EF-hand, calciu 97.1 0.00086 1.9E-08 33.7 3.2 27 82-108 2-28 (29)
106 KOG0998 Synaptic vesicle prote 96.9 0.0019 4E-08 60.3 6.2 140 73-219 122-345 (847)
107 KOG0035 Ca2+-binding actin-bun 96.9 0.01 2.3E-07 54.7 10.2 142 71-218 738-885 (890)
108 PF09279 EF-hand_like: Phospho 96.8 0.0046 1E-07 40.6 6.0 63 81-144 1-68 (83)
109 PLN02952 phosphoinositide phos 96.6 0.023 5E-07 50.9 10.1 89 130-219 13-110 (599)
110 KOG1955 Ral-GTPase effector RA 96.3 0.011 2.3E-07 50.9 5.9 67 150-219 227-293 (737)
111 KOG3555 Ca2+-binding proteogly 96.1 0.015 3.3E-07 47.8 5.8 97 80-181 211-309 (434)
112 KOG0169 Phosphoinositide-speci 95.9 0.049 1.1E-06 49.4 8.5 100 114-219 133-232 (746)
113 KOG3555 Ca2+-binding proteogly 95.8 0.02 4.3E-07 47.1 5.3 64 150-218 246-309 (434)
114 PF05042 Caleosin: Caleosin re 95.7 0.064 1.4E-06 40.1 7.2 34 188-221 93-126 (174)
115 KOG0042 Glycerol-3-phosphate d 95.7 0.03 6.5E-07 49.1 6.0 73 71-144 584-656 (680)
116 PF05517 p25-alpha: p25-alpha 94.9 0.18 3.9E-06 37.3 7.4 63 157-219 2-69 (154)
117 KOG0998 Synaptic vesicle prote 94.8 0.033 7.1E-07 52.2 3.9 132 81-219 12-190 (847)
118 KOG4347 GTPase-activating prot 94.7 0.035 7.6E-07 49.3 3.6 60 115-176 553-612 (671)
119 PF08726 EFhand_Ca_insen: Ca2+ 94.6 0.037 8E-07 35.0 2.7 57 151-216 3-66 (69)
120 KOG4578 Uncharacterized conser 94.5 0.012 2.6E-07 48.1 0.4 68 78-145 331-398 (421)
121 PF09069 EF-hand_3: EF-hand; 94.2 0.54 1.2E-05 31.4 7.7 66 153-221 2-77 (90)
122 KOG0042 Glycerol-3-phosphate d 93.8 0.13 2.8E-06 45.4 5.3 64 155-219 594-657 (680)
123 KOG3866 DNA-binding protein of 93.6 0.13 2.9E-06 41.8 4.7 59 159-218 249-323 (442)
124 KOG4578 Uncharacterized conser 93.4 0.063 1.4E-06 44.0 2.5 65 155-219 334-398 (421)
125 KOG1265 Phospholipase C [Lipid 93.3 2.4 5.1E-05 39.7 12.4 123 89-219 157-299 (1189)
126 KOG4347 GTPase-activating prot 92.8 0.18 3.9E-06 45.0 4.6 77 134-212 535-611 (671)
127 PF05517 p25-alpha: p25-alpha 92.6 0.76 1.7E-05 34.0 7.2 62 82-144 4-68 (154)
128 KOG2243 Ca2+ release channel ( 92.3 0.24 5.3E-06 48.0 5.0 58 159-218 4062-4119(5019)
129 PLN02952 phosphoinositide phos 92.1 1.7 3.8E-05 39.2 10.0 89 93-182 13-110 (599)
130 KOG0035 Ca2+-binding actin-bun 91.8 0.53 1.1E-05 44.0 6.5 67 152-219 745-816 (890)
131 KOG2243 Ca2+ release channel ( 91.6 0.38 8.2E-06 46.8 5.4 58 86-145 4063-4120(5019)
132 KOG3866 DNA-binding protein of 91.4 0.46 1E-05 38.8 5.1 93 84-183 248-355 (442)
133 KOG1707 Predicted Ras related/ 91.3 0.33 7.3E-06 43.1 4.5 70 72-144 307-376 (625)
134 PLN02222 phosphoinositide phos 89.0 2.1 4.5E-05 38.6 7.7 67 151-219 22-90 (581)
135 PF09069 EF-hand_3: EF-hand; 89.0 4.2 9.2E-05 27.1 7.4 61 80-144 3-74 (90)
136 PF08726 EFhand_Ca_insen: Ca2+ 88.5 0.47 1E-05 30.0 2.4 57 80-142 6-66 (69)
137 PF08414 NADPH_Ox: Respiratory 88.1 2.5 5.5E-05 28.6 5.8 60 78-143 28-90 (100)
138 PLN02228 Phosphoinositide phos 88.1 3.1 6.8E-05 37.4 8.2 69 149-219 19-92 (567)
139 PLN02230 phosphoinositide phos 86.0 4.6 9.9E-05 36.6 8.0 70 149-219 24-102 (598)
140 cd00086 homeodomain Homeodomai 84.1 6.6 0.00014 23.2 6.3 45 73-125 6-50 (59)
141 PF00046 Homeobox: Homeobox do 84.0 6.7 0.00015 23.2 6.4 46 72-125 5-50 (57)
142 PF09068 EF-hand_2: EF hand; 83.6 9.8 0.00021 27.1 7.5 33 77-109 38-72 (127)
143 cd07313 terB_like_2 tellurium 83.0 3.9 8.5E-05 27.6 5.2 84 94-180 13-98 (104)
144 PF08976 DUF1880: Domain of un 82.4 1.5 3.2E-05 30.6 2.7 31 114-144 4-34 (118)
145 KOG1264 Phospholipase C [Lipid 82.0 5.5 0.00012 37.2 6.8 147 71-219 134-293 (1267)
146 PLN02223 phosphoinositide phos 79.3 9.1 0.0002 34.2 7.2 69 150-219 12-92 (537)
147 PLN02222 phosphoinositide phos 79.2 9.7 0.00021 34.5 7.4 63 81-145 26-90 (581)
148 KOG4286 Dystrophin-like protei 79.0 25 0.00054 32.7 9.8 136 82-221 422-582 (966)
149 cd07313 terB_like_2 tellurium 77.2 4.2 9E-05 27.5 3.7 51 131-181 13-64 (104)
150 KOG0039 Ferric reductase, NADH 76.8 7.2 0.00016 35.9 6.1 80 131-218 2-88 (646)
151 KOG4004 Matricellular protein 76.7 0.88 1.9E-05 34.8 0.2 48 130-180 201-248 (259)
152 PRK09430 djlA Dna-J like membr 74.3 24 0.00051 28.7 7.9 99 93-200 68-175 (267)
153 PLN02228 Phosphoinositide phos 74.0 15 0.00033 33.1 7.2 63 79-143 23-90 (567)
154 PF08730 Rad33: Rad33; InterP 73.9 35 0.00076 25.5 10.1 39 73-112 7-45 (170)
155 PF00404 Dockerin_1: Dockerin 73.8 5.6 0.00012 18.8 2.5 17 90-106 1-17 (21)
156 KOG2301 Voltage-gated Ca2+ cha 73.6 6.3 0.00014 39.8 5.2 73 71-145 1408-1484(1592)
157 TIGR01848 PHA_reg_PhaR polyhyd 73.3 11 0.00024 25.9 4.8 69 125-204 11-82 (107)
158 PF14513 DAG_kinase_N: Diacylg 73.1 6.4 0.00014 28.5 3.9 69 95-166 6-81 (138)
159 PLN02230 phosphoinositide phos 72.8 20 0.00044 32.6 7.7 66 79-145 28-102 (598)
160 KOG3449 60S acidic ribosomal p 72.4 28 0.00061 24.0 6.6 54 82-141 3-56 (112)
161 PF12174 RST: RCD1-SRO-TAF4 (R 71.8 4.6 0.0001 25.6 2.6 49 131-183 6-54 (70)
162 PF08414 NADPH_Ox: Respiratory 70.3 25 0.00054 23.9 5.9 62 116-183 29-93 (100)
163 KOG1265 Phospholipase C [Lipid 69.9 61 0.0013 31.0 10.0 77 102-182 210-299 (1189)
164 KOG2871 Uncharacterized conser 68.9 5.2 0.00011 33.7 3.0 64 149-213 304-368 (449)
165 PF11116 DUF2624: Protein of u 66.2 35 0.00076 22.5 6.3 29 171-200 15-43 (85)
166 PF07879 PHB_acc_N: PHB/PHA ac 66.1 11 0.00024 23.3 3.3 39 161-200 10-58 (64)
167 PF01023 S_100: S-100/ICaBP ty 65.6 20 0.00044 20.3 4.2 32 78-109 4-37 (44)
168 PF05099 TerB: Tellurite resis 64.7 8.9 0.00019 27.3 3.3 80 93-175 36-117 (140)
169 PF07308 DUF1456: Protein of u 64.6 29 0.00063 21.8 5.1 43 99-142 16-58 (68)
170 KOG3449 60S acidic ribosomal p 64.5 44 0.00096 23.1 6.6 44 156-200 3-46 (112)
171 KOG4403 Cell surface glycoprot 63.6 17 0.00037 31.4 5.0 54 129-182 40-96 (575)
172 PF11116 DUF2624: Protein of u 63.4 32 0.0007 22.6 5.3 36 96-132 14-49 (85)
173 cd07316 terB_like_DjlA N-termi 63.2 26 0.00057 23.5 5.3 84 94-179 13-98 (106)
174 KOG0869 CCAAT-binding factor, 63.0 59 0.0013 24.0 7.8 87 92-200 28-115 (168)
175 KOG1954 Endocytosis/signaling 62.4 11 0.00024 32.1 3.7 56 157-216 447-502 (532)
176 PF11300 DUF3102: Protein of u 62.3 56 0.0012 23.4 7.1 77 96-181 38-128 (130)
177 KOG2871 Uncharacterized conser 62.0 7.3 0.00016 32.9 2.6 64 79-143 308-372 (449)
178 PF12174 RST: RCD1-SRO-TAF4 (R 61.9 28 0.0006 22.0 4.7 39 68-109 16-54 (70)
179 PF13551 HTH_29: Winged helix- 61.7 46 0.001 22.3 6.4 52 74-126 58-111 (112)
180 PF03979 Sigma70_r1_1: Sigma-7 61.4 9 0.00019 24.9 2.5 30 168-200 19-48 (82)
181 PF14513 DAG_kinase_N: Diacylg 61.2 18 0.00039 26.3 4.2 35 167-201 45-79 (138)
182 PF01325 Fe_dep_repress: Iron 61.0 8.2 0.00018 23.5 2.1 54 74-137 2-55 (60)
183 cd07316 terB_like_DjlA N-termi 58.6 36 0.00078 22.8 5.3 52 131-182 13-64 (106)
184 PF04157 EAP30: EAP30/Vps36 fa 58.5 38 0.00082 26.6 6.1 14 100-113 61-74 (223)
185 PTZ00373 60S Acidic ribosomal 58.4 60 0.0013 22.6 6.5 54 156-215 5-58 (112)
186 smart00389 HOX Homeodomain. DN 57.3 36 0.00078 19.7 6.0 45 73-125 6-50 (56)
187 PLN02223 phosphoinositide phos 55.8 60 0.0013 29.2 7.3 65 80-145 16-92 (537)
188 PTZ00373 60S Acidic ribosomal 55.1 70 0.0015 22.3 6.6 52 84-141 7-58 (112)
189 PF07308 DUF1456: Protein of u 54.6 48 0.001 20.8 4.8 25 174-199 17-41 (68)
190 PF02885 Glycos_trans_3N: Glyc 54.0 44 0.00096 20.5 4.7 30 151-183 15-44 (66)
191 KOG1954 Endocytosis/signaling 53.1 26 0.00057 30.0 4.4 57 82-142 446-502 (532)
192 PF07499 RuvA_C: RuvA, C-termi 52.3 43 0.00093 19.1 4.3 39 174-217 4-42 (47)
193 TIGR01639 P_fal_TIGR01639 Plas 52.1 53 0.0011 20.0 4.7 31 169-200 8-38 (61)
194 PF12419 DUF3670: SNF2 Helicas 51.9 33 0.00071 24.8 4.4 50 167-216 80-138 (141)
195 COG4103 Uncharacterized protei 51.0 88 0.0019 22.8 6.2 94 83-181 33-128 (148)
196 COG2979 Uncharacterized protei 50.7 1.2E+02 0.0026 23.7 8.5 91 93-199 123-217 (225)
197 KOG0506 Glutaminase (contains 49.9 1.5E+02 0.0032 26.4 8.5 59 85-144 91-157 (622)
198 PF05099 TerB: Tellurite resis 49.1 7.2 0.00016 27.8 0.5 14 130-143 36-49 (140)
199 KOG0843 Transcription factor E 48.1 51 0.0011 25.0 4.8 51 67-125 102-152 (197)
200 COG5502 Uncharacterized conser 47.8 1E+02 0.0022 22.2 7.4 71 118-198 58-133 (135)
201 COG4359 Uncharacterized conser 47.8 48 0.001 25.5 4.7 78 129-220 9-88 (220)
202 TIGR03573 WbuX N-acetyl sugar 46.4 52 0.0011 27.7 5.4 43 168-217 300-342 (343)
203 COG4103 Uncharacterized protei 45.6 52 0.0011 23.9 4.4 58 158-218 34-93 (148)
204 KOG4301 Beta-dystrobrevin [Cyt 45.5 1.9E+02 0.0041 24.5 9.2 138 77-221 53-217 (434)
205 PHA02105 hypothetical protein 45.0 55 0.0012 19.8 3.7 49 170-218 4-56 (68)
206 KOG4004 Matricellular protein 44.2 8.7 0.00019 29.6 0.4 55 160-218 193-249 (259)
207 KOG0493 Transcription factor E 44.0 64 0.0014 26.0 5.1 51 67-125 246-296 (342)
208 cd05833 Ribosomal_P2 Ribosomal 43.9 1.1E+02 0.0023 21.2 6.5 53 157-215 4-56 (109)
209 PF01885 PTS_2-RNA: RNA 2'-pho 42.8 46 0.001 25.4 4.1 38 90-128 26-63 (186)
210 PF03672 UPF0154: Uncharacteri 42.8 78 0.0017 19.6 4.3 32 94-126 29-60 (64)
211 PRK00819 RNA 2'-phosphotransfe 42.5 59 0.0013 24.7 4.6 37 90-127 27-63 (179)
212 PRK01294 lipase chaperone; Pro 42.4 2.1E+02 0.0045 24.1 8.4 28 81-109 87-114 (336)
213 PF08461 HTH_12: Ribonuclease 42.2 48 0.001 20.5 3.4 37 167-204 10-46 (66)
214 PF04157 EAP30: EAP30/Vps36 fa 42.1 1.3E+02 0.0027 23.6 6.6 117 77-200 94-214 (223)
215 TIGR01565 homeo_ZF_HD homeobox 42.0 79 0.0017 19.1 4.9 45 71-123 5-53 (58)
216 KOG4301 Beta-dystrobrevin [Cyt 41.9 39 0.00085 28.4 3.7 59 159-219 115-173 (434)
217 cd05833 Ribosomal_P2 Ribosomal 41.8 1.2E+02 0.0025 21.0 6.5 54 84-143 5-58 (109)
218 KOG4070 Putative signal transd 40.6 33 0.00073 25.2 2.8 83 81-163 13-107 (180)
219 KOG0488 Transcription factor B 39.6 78 0.0017 26.4 5.3 51 67-125 172-222 (309)
220 PRK09430 djlA Dna-J like membr 38.6 77 0.0017 25.7 5.0 10 131-140 69-78 (267)
221 PLN03081 pentatricopeptide (PP 38.4 3.3E+02 0.0071 25.3 12.8 45 134-184 159-203 (697)
222 PF01885 PTS_2-RNA: RNA 2'-pho 38.4 52 0.0011 25.1 3.8 36 164-200 26-61 (186)
223 KOG0113 U1 small nuclear ribon 38.2 87 0.0019 25.9 5.1 85 79-164 40-126 (335)
224 KOG4403 Cell surface glycoprot 37.1 2.2E+02 0.0047 25.0 7.4 62 79-144 67-128 (575)
225 KOG3077 Uncharacterized conser 36.8 2.3E+02 0.005 23.0 11.7 79 79-160 63-142 (260)
226 COG3763 Uncharacterized protei 36.6 1.1E+02 0.0024 19.3 5.0 41 84-126 27-67 (71)
227 PRK00819 RNA 2'-phosphotransfe 36.5 68 0.0015 24.4 4.1 34 165-199 28-61 (179)
228 PRK00523 hypothetical protein; 35.9 1.2E+02 0.0025 19.3 4.6 41 84-126 28-68 (72)
229 cd07894 Adenylation_RNA_ligase 35.8 92 0.002 26.3 5.2 105 86-192 131-247 (342)
230 PF00690 Cation_ATPase_N: Cati 35.3 1.1E+02 0.0023 18.8 4.6 32 82-113 6-37 (69)
231 PF09068 EF-hand_2: EF hand; 35.2 54 0.0012 23.3 3.3 21 123-143 103-123 (127)
232 PRK09522 bifunctional glutamin 34.7 3.5E+02 0.0076 24.5 9.2 56 134-194 198-253 (531)
233 TIGR02675 tape_meas_nterm tape 34.6 51 0.0011 21.0 2.8 14 168-181 28-41 (75)
234 TIGR00624 tag DNA-3-methyladen 34.3 2E+02 0.0042 21.9 6.3 104 77-184 50-167 (179)
235 PF14297 DUF4373: Domain of un 34.2 1.2E+02 0.0026 19.7 4.6 15 159-173 69-83 (87)
236 PRK08181 transposase; Validate 34.2 90 0.002 25.3 4.8 82 94-179 4-96 (269)
237 cd07177 terB_like tellurium re 34.0 1.1E+02 0.0024 19.9 4.6 80 94-178 13-96 (104)
238 cd08330 CARD_ASC_NALP1 Caspase 33.8 1.3E+02 0.0027 19.5 4.6 45 168-218 27-71 (82)
239 COG2255 RuvB Holliday junction 33.6 2.4E+02 0.0051 23.6 6.9 73 80-161 222-299 (332)
240 PF13608 Potyvirid-P3: Protein 33.3 55 0.0012 28.7 3.6 32 78-110 287-318 (445)
241 PF08044 DUF1707: Domain of un 33.0 73 0.0016 18.8 3.0 31 167-198 20-50 (53)
242 PRK14981 DNA-directed RNA poly 32.8 92 0.002 21.6 4.0 26 173-199 81-106 (112)
243 cd08315 Death_TRAILR_DR4_DR5 D 32.8 1.5E+02 0.0033 19.8 9.0 40 80-126 4-43 (96)
244 PF09336 Vps4_C: Vps4 C termin 32.8 72 0.0016 19.5 3.1 27 170-197 29-55 (62)
245 PF13331 DUF4093: Domain of un 32.0 1.5E+02 0.0033 19.5 8.7 57 133-197 30-86 (87)
246 PRK06049 rpl30p 50S ribosomal 31.3 1E+02 0.0022 22.8 4.2 94 95-200 56-153 (154)
247 PF09107 SelB-wing_3: Elongati 31.2 85 0.0018 18.3 3.1 11 133-143 10-20 (50)
248 KOG1092 Ypt/Rab-specific GTPas 31.0 2.5E+02 0.0054 24.6 6.9 28 173-200 442-469 (484)
249 KOG4286 Dystrophin-like protei 30.8 3.5E+02 0.0075 25.7 8.1 102 114-217 417-531 (966)
250 cd07176 terB tellurite resista 30.6 60 0.0013 21.7 2.8 81 94-177 16-100 (111)
251 PLN00138 large subunit ribosom 30.6 1.9E+02 0.0041 20.2 6.3 42 158-200 5-46 (113)
252 KOG0039 Ferric reductase, NADH 30.5 71 0.0015 29.6 4.0 66 116-182 17-89 (646)
253 PF09373 PMBR: Pseudomurein-bi 30.0 57 0.0012 17.1 2.0 14 205-218 2-15 (33)
254 TIGR01209 RNA ligase, Pab1020 29.9 1.5E+02 0.0032 25.5 5.5 105 86-192 163-280 (374)
255 cd01671 CARD Caspase activatio 29.7 1.5E+02 0.0032 18.6 4.6 46 168-219 25-70 (80)
256 PF10437 Lip_prot_lig_C: Bacte 29.4 1.3E+02 0.0028 19.4 4.2 43 172-217 43-86 (86)
257 PF11829 DUF3349: Protein of u 29.4 1.5E+02 0.0032 20.1 4.4 66 134-200 20-85 (96)
258 cd04411 Ribosomal_P1_P2_L12p R 29.3 1.9E+02 0.0042 19.8 7.2 42 97-144 17-58 (105)
259 PF12486 DUF3702: ImpA domain 29.1 2E+02 0.0042 21.2 5.3 33 77-109 66-98 (148)
260 cd08819 CARD_MDA5_2 Caspase ac 29.0 1.8E+02 0.0038 19.3 5.8 49 167-219 30-78 (88)
261 cd03035 ArsC_Yffb Arsenate Red 28.9 56 0.0012 22.3 2.4 13 208-220 72-84 (105)
262 PF12995 DUF3879: Domain of un 28.6 2.4E+02 0.0053 21.1 5.7 55 98-168 3-57 (186)
263 PF06648 DUF1160: Protein of u 28.6 1.4E+02 0.0031 21.1 4.4 48 78-129 35-83 (122)
264 cd08324 CARD_NOD1_CARD4 Caspas 28.4 1.8E+02 0.0039 19.2 4.9 27 132-162 28-54 (85)
265 PF04391 DUF533: Protein of un 28.3 2.8E+02 0.006 21.3 9.6 100 82-199 83-186 (188)
266 PF04695 Pex14_N: Peroxisomal 27.8 2.3E+02 0.005 20.3 6.3 48 154-204 4-51 (136)
267 PF03556 Cullin_binding: Culli 27.6 1E+02 0.0022 21.5 3.6 51 161-218 67-117 (117)
268 TIGR03573 WbuX N-acetyl sugar 27.4 1.5E+02 0.0032 25.0 5.2 59 108-180 284-342 (343)
269 COG1321 TroR Mn-dependent tran 27.1 2.6E+02 0.0056 20.6 5.9 110 75-201 5-121 (154)
270 PRK01844 hypothetical protein; 26.7 1.8E+02 0.0038 18.5 4.5 40 85-126 28-67 (72)
271 KOG0506 Glutaminase (contains 26.6 2E+02 0.0043 25.6 5.7 23 122-144 91-113 (622)
272 PRK14607 bifunctional glutamin 26.3 3.5E+02 0.0076 24.4 7.6 60 134-198 193-252 (534)
273 KOG2419 Phosphatidylserine dec 26.2 35 0.00076 31.3 1.2 62 157-219 440-533 (975)
274 COG5562 Phage envelope protein 26.0 55 0.0012 23.6 1.9 29 188-219 72-100 (137)
275 PF08349 DUF1722: Protein of u 25.8 1.6E+02 0.0034 20.5 4.3 15 167-181 82-96 (117)
276 PF12029 DUF3516: Domain of un 25.6 4.7E+02 0.01 23.1 8.8 113 69-184 173-303 (461)
277 PLN00138 large subunit ribosom 25.6 2.4E+02 0.0052 19.7 6.5 50 86-141 7-56 (113)
278 PF02761 Cbl_N2: CBL proto-onc 25.4 2.1E+02 0.0045 18.9 5.9 69 114-184 4-72 (85)
279 TIGR02574 stabl_TIGR02574 puta 25.4 1.7E+02 0.0036 17.8 4.3 30 77-106 31-60 (63)
280 PF12793 SgrR_N: Sugar transpo 25.3 1.6E+02 0.0035 20.5 4.2 40 81-127 5-44 (115)
281 PLN02508 magnesium-protoporphy 25.1 1.6E+02 0.0034 24.8 4.6 82 110-204 35-123 (357)
282 PRK03968 DNA primase large sub 25.0 2.1E+02 0.0046 24.5 5.4 73 92-182 117-189 (399)
283 PRK00188 trpD anthranilate pho 24.7 3.8E+02 0.0082 22.5 7.1 13 114-126 16-28 (339)
284 PRK07571 bidirectional hydroge 24.6 2.3E+02 0.005 21.3 5.2 30 93-125 48-77 (169)
285 PRK09071 hypothetical protein; 24.4 4.2E+02 0.0092 22.2 7.5 43 150-195 20-62 (323)
286 TIGR02395 rpoN_sigma RNA polym 24.1 4.9E+02 0.011 22.8 10.3 64 73-144 90-158 (429)
287 PF07128 DUF1380: Protein of u 24.0 2.8E+02 0.0061 20.2 5.2 29 172-201 28-56 (139)
288 PF12825 DUF3818: Domain of un 23.9 3.7E+02 0.008 22.8 6.8 20 72-91 170-189 (341)
289 PF05872 DUF853: Bacterial pro 23.8 1.4E+02 0.003 26.5 4.3 52 133-184 105-158 (502)
290 PF00249 Myb_DNA-binding: Myb- 23.7 1.5E+02 0.0032 16.6 6.2 44 73-125 3-46 (48)
291 TIGR00135 gatC glutamyl-tRNA(G 23.3 1.7E+02 0.0037 19.2 4.0 28 171-199 1-28 (93)
292 PRK10945 gene expression modul 23.1 1.9E+02 0.0041 18.4 3.7 22 176-198 24-45 (72)
293 COG2036 HHT1 Histones H3 and H 22.5 2.5E+02 0.0054 18.8 4.6 28 157-184 58-85 (91)
294 COG4807 Uncharacterized protei 22.4 3E+02 0.0066 19.8 6.7 89 102-201 21-128 (155)
295 COG1460 Uncharacterized protei 21.9 1.6E+02 0.0035 20.6 3.5 28 172-200 81-108 (114)
296 PF15144 DUF4576: Domain of un 21.9 39 0.00084 21.8 0.5 41 94-136 38-78 (88)
297 KOG4629 Predicted mechanosensi 21.8 1.9E+02 0.0041 27.2 5.0 56 156-219 406-461 (714)
298 PF12631 GTPase_Cys_C: Catalyt 21.7 2.1E+02 0.0046 17.9 3.9 47 79-126 22-72 (73)
299 COG5069 SAC6 Ca2+-binding acti 21.7 1.5E+02 0.0033 26.3 4.1 88 77-169 482-569 (612)
300 PHA01351 putative minor struct 21.5 3.4E+02 0.0073 25.6 6.3 18 167-184 589-606 (1070)
301 PF06163 DUF977: Bacterial pro 21.4 2.7E+02 0.0059 19.9 4.7 49 71-126 2-50 (127)
302 cd04790 HTH_Cfa-like_unk Helix 21.4 3.1E+02 0.0067 20.5 5.4 56 130-196 112-167 (172)
303 PF11363 DUF3164: Protein of u 21.2 3.9E+02 0.0085 20.6 6.5 55 138-200 107-161 (195)
304 PRK00034 gatC aspartyl/glutamy 21.0 2.1E+02 0.0046 18.8 4.1 29 170-199 2-30 (95)
305 PF04361 DUF494: Protein of un 20.9 3.5E+02 0.0076 20.0 5.6 44 155-201 4-48 (155)
306 PRK08136 glycosyl transferase 20.7 5E+02 0.011 21.7 7.5 43 150-195 19-61 (317)
307 PF00427 PBS_linker_poly: Phyc 20.7 3.3E+02 0.0072 19.5 5.3 51 131-183 42-99 (131)
308 PRK09462 fur ferric uptake reg 20.6 3.2E+02 0.007 19.6 5.3 42 158-200 21-62 (148)
309 PF10678 DUF2492: Protein of u 20.5 2.5E+02 0.0055 18.1 6.1 49 171-220 4-59 (78)
310 KOG0871 Class 2 transcription 20.4 3.6E+02 0.0078 19.8 7.5 84 92-197 8-92 (156)
311 PLN02508 magnesium-protoporphy 20.4 2.9E+02 0.0062 23.3 5.2 82 77-166 41-122 (357)
312 COG3820 Uncharacterized protei 20.3 1.2E+02 0.0027 23.0 2.9 50 132-181 19-70 (230)
313 TIGR03830 CxxCG_CxxCG_HTH puta 20.2 3E+02 0.0065 18.9 5.2 46 75-123 43-88 (127)
314 TIGR02787 codY_Gpos GTP-sensin 20.2 3.3E+02 0.0072 21.9 5.4 32 74-106 177-208 (251)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=4.6e-30 Score=187.71 Aligned_cols=147 Identities=30% Similarity=0.541 Sum_probs=140.3
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCC
Q 027592 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEP 150 (221)
Q Consensus 71 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~ 150 (221)
...|+.+++++++++|..+|.|++|.|+..+|..+++.+|++ +++.++.+++..+|. +.+.|+|.+|+.++.......
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~-~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFN-PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCC-CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC
Confidence 346788999999999999999999999999999999999999 999999999999999 889999999999998777788
Q ss_pred CChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHhC
Q 027592 151 ACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 220 (221)
Q Consensus 151 ~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~~ 220 (221)
...++++++|+.||.|++|+|+..|++.+++.+| ..+++++++.+++.+|.|++|.|+|++|++.+...
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg-e~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLG-ERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc-ccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhcc
Confidence 9999999999999999999999999999999999 99999999999999999999999999999987653
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=1.3e-27 Score=177.36 Aligned_cols=145 Identities=42% Similarity=0.651 Sum_probs=134.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCC--
Q 027592 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPA-- 151 (221)
Q Consensus 74 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~-- 151 (221)
++..++.++.++|..||.|++|.|+..||..+++.+|.. ++..++..++..+|.+++|.|+|++|+.++........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~-~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~ 80 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQN-PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDE 80 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccc
Confidence 456889999999999999999999999999999999999 99999999999999999999999999999975544333
Q ss_pred --ChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHhC
Q 027592 152 --CEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 220 (221)
Q Consensus 152 --~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~~ 220 (221)
..++++.+|+.||.|++|+|+..||+.+|..+| ...+.+++..+++.+|.|++|.|+|++|+.+|...
T Consensus 81 ~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg-~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 81 EASSEELKEAFRVFDKDGDGFISASELKKVLTSLG-EKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC-CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 356999999999999999999999999999999 99999999999999999999999999999998753
No 3
>PTZ00183 centrin; Provisional
Probab=99.93 E-value=3.3e-24 Score=159.97 Aligned_cols=147 Identities=33% Similarity=0.536 Sum_probs=135.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCC
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPAC 152 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~ 152 (221)
.++++++.++..+|..+|.+++|.|+..||..++..+|.. ++...+..++..+|.+++|.|+|.||+.++.........
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFE-PKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 3566889999999999999999999999999999999988 889999999999999999999999999988644344556
Q ss_pred hHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHhCC
Q 027592 153 EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQR 221 (221)
Q Consensus 153 ~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~~~ 221 (221)
.+.+..+|+.+|.+++|+|+.+||..++..+| ..++..++..+|..+|.+++|.|+|++|+.++...|
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELG-ETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 78899999999999999999999999999999 999999999999999999999999999999998754
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.6e-24 Score=155.32 Aligned_cols=144 Identities=33% Similarity=0.501 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCCh
Q 027592 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACE 153 (221)
Q Consensus 74 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~ 153 (221)
+++++.++++..|..||.+++|.|+++||..+++++|+. +.+.++.+++..+|.++.|.|+|++|...+........+.
T Consensus 27 l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE-~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~ 105 (172)
T KOG0028|consen 27 LTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFE-PKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTK 105 (172)
T ss_pred ccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCC-cchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcH
Confidence 444778899999999999999999999999999999999 9999999999999999999999999999987777777799
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 154 PELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 154 ~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
++++.+|+.+|.|++|.|+..+|+.+...+| ..++++++.+|++.+|.+++|-|+-+||..+|.+
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~lkrvakeLg-enltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRNLKRVAKELG-ENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHHHHHHHHHhC-ccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999875
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.92 E-value=2.2e-23 Score=153.83 Aligned_cols=145 Identities=34% Similarity=0.581 Sum_probs=132.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCC
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPAC 152 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~ 152 (221)
.+++++++++...|..+|.+++|.|+..||..++..++.. +....+..++..+|.+++|.|+|++|+.++.........
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC-CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcH
Confidence 4677899999999999999999999999999999999988 888999999999999999999999999988643333445
Q ss_pred hHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 153 EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 153 ~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
...+..+|+.+|.+++|+|+.+||..++..++ ..++.+++..++..+|.+++|.|+|+||+.++..
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC-CCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 67889999999999999999999999999999 8999999999999999999999999999998864
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.91 E-value=5.2e-23 Score=146.51 Aligned_cols=141 Identities=22% Similarity=0.364 Sum_probs=133.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCC
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPAC 152 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~ 152 (221)
.|++.||++++++|..+|.|+||.|+.++|+.++.++|.. ++++++..++... .|-|+|.-|+.++...+.....
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~-~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI-ASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCH
Confidence 3566899999999999999999999999999999999999 9999999999765 5789999999999988888888
Q ss_pred hHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 153 EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 153 ~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
++.+..+|..||.+++|.|..+.|+.+|...| ..+++++++.|++.+-.|..|.|+|.+|+.++.+
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g-Dr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMG-DRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhc-ccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 99999999999999999999999999999999 9999999999999999999999999999999874
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.90 E-value=6e-23 Score=143.81 Aligned_cols=142 Identities=25% Similarity=0.396 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCC--CCCcccHHHHHHHHcCCCC--C
Q 027592 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDRE--GDGYIPLEALISRVGNSSC--E 149 (221)
Q Consensus 74 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~--~~g~I~~~ef~~~~~~~~~--~ 149 (221)
+++++..+++++|..||..+||.|+..+...+|+++|++ |++.++.+.+..++.+ +-..|+|++|+.++..... .
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~n-PT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQN-PTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCC-CcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 456788999999999999999999999999999999999 9999999999999776 4578999999999875333 6
Q ss_pred CCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 027592 150 PACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 150 ~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~ 218 (221)
....+.+...+++||++++|+|...||+++|.++| +.++++|++.++... .|.+|.|+|+.|++.+.
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlG-ekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG-EKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHH-hhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 77888999999999999999999999999999999 999999999999987 78899999999998764
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.88 E-value=3.8e-21 Score=145.09 Aligned_cols=133 Identities=25% Similarity=0.326 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHH
Q 027592 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKE 158 (221)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~ 158 (221)
-.++...|...|.|+.|.|+.+||.++|......+++.+.|+.|+..+|.+.+|+|+|+||..+| .....|+.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw-------~~i~~Wr~ 128 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALW-------KYINQWRN 128 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHH-------HHHHHHHH
Confidence 34588999999999999999999999999888887999999999999999999999999999999 88999999
Q ss_pred HHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 159 TFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 159 ~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
+|+.||.|+.|.|+..||+++|..+| ..++++.++.|++.+|..++|.|.|++|+++|..
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~G-y~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLG-YRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcC-cCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999888999999999999864
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.85 E-value=9.8e-20 Score=137.78 Aligned_cols=145 Identities=24% Similarity=0.384 Sum_probs=122.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCc-ccHHHHHHHHcCCCCC
Q 027592 72 ADISLDMNYELVQACKLLDRD-NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGY-IPLEALISRVGNSSCE 149 (221)
Q Consensus 72 ~~l~~~~~~~l~~~F~~~D~d-~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~-I~~~ef~~~~~~~~~~ 149 (221)
+.|+..++..|...|.++|.+ ++|.|+.+||..++ .+..+ ....++++.++.+++|. |+|++|+..+......
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~N----p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~ 99 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALN----PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPK 99 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcC----cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCC
Confidence 557789999999999999999 99999999999999 44444 45667777778877777 9999999999765556
Q ss_pred CCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCC--HHH----HHHHHHhhcCCCCcceeHHHHHHHHHhCC
Q 027592 150 PACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCT--LDD----CRGMIALVDKNGDGFVCFEDFSRMMELQR 221 (221)
Q Consensus 150 ~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~--~~~----~~~i~~~~d~~~~g~i~~~eF~~~l~~~~ 221 (221)
....+.++.+|++||.+++|+|+.+|+.+++..+-....+ ++. ++.+|..+|.|+||+|+++||+.++.++|
T Consensus 100 ~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 100 ASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 6666799999999999999999999999999987424444 454 56678899999999999999999998764
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.81 E-value=5.3e-19 Score=133.88 Aligned_cols=144 Identities=22% Similarity=0.313 Sum_probs=118.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCC
Q 027592 73 DISLDMNYELVQACKLLDRD-NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPA 151 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d-~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~ 151 (221)
.+++.++ .+.++.|-.+ ++|.++.++|+.++..++...-+...+..+|+.+|.|++|.|+|.||+..+. ....+.
T Consensus 22 ~f~~~ei---~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als-~~~rGt 97 (193)
T KOG0044|consen 22 KFSKKEI---QQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALS-LTSRGT 97 (193)
T ss_pred CCCHHHH---HHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHH-HHcCCc
Confidence 3444554 5555555444 5999999999999999986536677889999999999999999999999986 445778
Q ss_pred ChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHh----CC------CCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHhC
Q 027592 152 CEPELKETFDFFDADHDGKITAEELFGVFTKL----GD------ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 220 (221)
Q Consensus 152 ~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~----~~------~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~~ 220 (221)
..+.+.++|++||.||+|+|+.+|+..++..+ +. ....++.++.+|..+|.|+||.||++||...+...
T Consensus 98 ~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 98 LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 88899999999999999999999999999875 21 12234568899999999999999999999988654
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.76 E-value=3.7e-17 Score=133.67 Aligned_cols=141 Identities=26% Similarity=0.355 Sum_probs=130.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCCh
Q 027592 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACE 153 (221)
Q Consensus 74 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~ 153 (221)
+.++...+++.+|..||.+++|.|+..++.+.+..+..+.+..+....++..+|.|.+|.++|.||...+. ..+
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------~~E 81 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD------NKE 81 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH------HhH
Confidence 44577888999999999999999999999999999876546677889999999999999999999999995 788
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHhCC
Q 027592 154 PELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQR 221 (221)
Q Consensus 154 ~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~~~ 221 (221)
.++..+|...|.++||.|+.+|+.+.|..+| ..+++++++.+++.+|.++++.|+++||.+++...|
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g-i~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLG-IQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhC-CccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 8999999999999999999999999999999 999999999999999999999999999999887643
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.58 E-value=4.4e-14 Score=124.61 Aligned_cols=121 Identities=21% Similarity=0.334 Sum_probs=104.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCCHHH---HHHHHHhhcCCCCCcccHHHHHHHHcCCC
Q 027592 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLG-ADPPTQEE---VKSMLSEVDREGDGYIPLEALISRVGNSS 147 (221)
Q Consensus 72 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~~~~---~~~l~~~~d~~~~g~I~~~ef~~~~~~~~ 147 (221)
..|+..+++++.++|..+|.|++|.+ +..+++.+| .. +++.+ +..+|..+|.+++|.|+|+||+.++.. .
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~-pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~-l 208 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIED-PVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA-F 208 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCC-CCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH-h
Confidence 46777899999999999999999997 899999999 47 77776 899999999999999999999999973 3
Q ss_pred CCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHH-------------hCCCCCCH-HHHHHHHHh
Q 027592 148 CEPACEPELKETFDFFDADHDGKITAEELFGVFTK-------------LGDELCTL-DDCRGMIAL 199 (221)
Q Consensus 148 ~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~-------------~~~~~~~~-~~~~~i~~~ 199 (221)
......+++..+|+.||.|++|+|+.+||.+++.. ++ ..++. ++++.|+..
T Consensus 209 g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg-~~l~~~~~~~~iiH~ 273 (644)
T PLN02964 209 GNLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCG-EALGVSDKLNAMIHM 273 (644)
T ss_pred ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhc-CcccchhhHHHHHHH
Confidence 34567888999999999999999999999999998 56 55666 566666643
No 13
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3.9e-14 Score=113.12 Aligned_cols=137 Identities=23% Similarity=0.309 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCC----CCCCh
Q 027592 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSC----EPACE 153 (221)
Q Consensus 78 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~----~~~~~ 153 (221)
.+.+=++.|+..|.|+||.++.+||..+|.---.+.+..-.|..-+...|.|+||.|+++||+.-+..... .....
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 35556788999999999999999999999655443233445677788999999999999999998875443 22223
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHH
Q 027592 154 PELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSR 215 (221)
Q Consensus 154 ~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~ 215 (221)
.+-...+..+|.|+||+|+.+|+++.+..-+ ......++..++...|.|+||+||++|.+.
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~-~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSE-QDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCC-ccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 3445677889999999999999999998888 888889999999999999999999999874
No 14
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.4e-13 Score=109.93 Aligned_cols=142 Identities=25% Similarity=0.289 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCC------CCC
Q 027592 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSS------CEP 150 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~------~~~ 150 (221)
+..+.+..+|.++|.+++|.|+..|+..++...... ....++.+-|..+|.|.+|.|+|+||...+.... ...
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~-~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKK-YVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 456779999999999999999999999999876555 6667788889999999999999999999886422 111
Q ss_pred CC-------hHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 151 AC-------EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 151 ~~-------~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
.. ...-+..|++-|.|++|.+|.+||..+|-.-....|.+-.|.+-+...|+|+||+|+++||+.=|..
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 11 1223457999999999999999999999865436677778899999999999999999999987654
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.44 E-value=4.6e-13 Score=89.71 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=61.4
Q ss_pred hHHHHHHHhhhcC-CCCCCcCHHHHHHHHHH-hCCCCCCH-HHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 153 EPELKETFDFFDA-DHDGKITAEELFGVFTK-LGDELCTL-DDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 153 ~~~l~~~f~~~D~-d~dG~I~~~e~~~~l~~-~~~~~~~~-~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
...++.+|+.||. +++|+|+..||+.++.. +| ..+++ ++++.|++.+|.|+||.|+|+||+.+|..
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLP-HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3568899999999 99999999999999999 88 87888 99999999999999999999999998864
No 16
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.42 E-value=8.5e-13 Score=83.85 Aligned_cols=62 Identities=35% Similarity=0.591 Sum_probs=55.0
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHH----HHHHHHhhcCCCCcceeHHHHHHHH
Q 027592 155 ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDD----CRGMIALVDKNGDGFVCFEDFSRMM 217 (221)
Q Consensus 155 ~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~----~~~i~~~~d~~~~g~i~~~eF~~~l 217 (221)
.++.+|+.+|.|++|+|+.+||..++..++ ...+..+ +..+|..+|.|++|.|+++||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLG-RDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTT-SHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999999999999999999998 6665555 4555999999999999999999886
No 17
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.38 E-value=8.6e-12 Score=88.64 Aligned_cols=146 Identities=17% Similarity=0.199 Sum_probs=109.8
Q ss_pred cccCCHHHHHHHHHHHHHhCCC-----------CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHH
Q 027592 71 SADISLDMNYELVQACKLLDRD-----------NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEAL 139 (221)
Q Consensus 71 ~~~l~~~~~~~l~~~F~~~D~d-----------~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef 139 (221)
.+.++..++-++...|..+.++ ..-.++.+.+.++. .+.-+ + --+++...+..++.|.++|++|
T Consensus 19 CTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMP-ELken-p---fk~ri~e~FSeDG~GnlsfddF 93 (189)
T KOG0038|consen 19 CTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMP-ELKEN-P---FKRRICEVFSEDGRGNLSFDDF 93 (189)
T ss_pred cccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhCh-hhhcC-h---HHHHHHHHhccCCCCcccHHHH
Confidence 4456778888888888777643 12244555554443 33333 2 2345566677899999999999
Q ss_pred HHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHH----HHHHHhhcCCCCcceeHHHHHH
Q 027592 140 ISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDC----RGMIALVDKNGDGFVCFEDFSR 215 (221)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~----~~i~~~~d~~~~g~i~~~eF~~ 215 (221)
+..+..........-.+..+|+.||-|+|++|..+++...+..+.+..++++++ ++++..+|.||||+|++.||..
T Consensus 94 lDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~ 173 (189)
T KOG0038|consen 94 LDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEH 173 (189)
T ss_pred HHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Confidence 999864433444555677899999999999999999999999997788999986 5678889999999999999999
Q ss_pred HHHhCC
Q 027592 216 MMELQR 221 (221)
Q Consensus 216 ~l~~~~ 221 (221)
++.+.|
T Consensus 174 ~i~raP 179 (189)
T KOG0038|consen 174 VILRAP 179 (189)
T ss_pred HHHhCc
Confidence 887654
No 18
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.38 E-value=7.9e-12 Score=92.64 Aligned_cols=104 Identities=29% Similarity=0.492 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCC----CHH
Q 027592 116 QEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELC----TLD 191 (221)
Q Consensus 116 ~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~----~~~ 191 (221)
..++..+|..+|.+++|.|+-.|+..++. .........++..++..+|.+++|.|+.+||..++...+.... +.+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr-~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLR-SLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHH-HcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 45788999999999999999999999996 4446678999999999999999999999999999998762222 355
Q ss_pred HHHHHHHhhcCCCCcceeHHHHHHHHHhC
Q 027592 192 DCRGMIALVDKNGDGFVCFEDFSRMMELQ 220 (221)
Q Consensus 192 ~~~~i~~~~d~~~~g~i~~~eF~~~l~~~ 220 (221)
++.++|+.+|.|++|.|+..|+..+|...
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 99999999999999999999999998753
No 19
>PTZ00183 centrin; Provisional
Probab=99.35 E-value=2.3e-11 Score=90.45 Aligned_cols=103 Identities=21% Similarity=0.297 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHH
Q 027592 116 QEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRG 195 (221)
Q Consensus 116 ~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~ 195 (221)
..++..+|..+|.+++|.|++.||..++... ........+..+|..+|.+++|.|+.+||..++..........+.+..
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~ 94 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK 94 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4567888999999999999999999988532 334566789999999999999999999999988764225567788999
Q ss_pred HHHhhcCCCCcceeHHHHHHHHHh
Q 027592 196 MIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 196 i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
+|..+|.+++|.|+++||..++..
T Consensus 95 ~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 95 AFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHH
Confidence 999999999999999999999864
No 20
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.33 E-value=7.8e-12 Score=83.82 Aligned_cols=66 Identities=21% Similarity=0.392 Sum_probs=60.7
Q ss_pred hHHHHHHHhhhc-CCCCC-CcCHHHHHHHHHH-----hCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 153 EPELKETFDFFD-ADHDG-KITAEELFGVFTK-----LGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 153 ~~~l~~~f~~~D-~d~dG-~I~~~e~~~~l~~-----~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
...++.+|+.|| .||+| +|+.+||+.+|+. +| ...++++++.+++.+|.|++|.|+|+||+.++..
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg-~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE-EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 357889999998 79999 5999999999999 88 8899999999999999999999999999998864
No 21
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.33 E-value=6.5e-12 Score=79.75 Aligned_cols=62 Identities=32% Similarity=0.587 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCH----HHHHHHHHhhcCCCCCcccHHHHHHHH
Q 027592 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQ----EEVKSMLSEVDREGDGYIPLEALISRV 143 (221)
Q Consensus 81 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~----~~~~~l~~~~d~~~~g~I~~~ef~~~~ 143 (221)
+|+++|..+|.|++|.|+.+||..++..++.. ... ..+..+|..+|.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRD-MSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSH-STHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999999999999999999875 544 455666999999999999999998764
No 22
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.33 E-value=7e-12 Score=83.98 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHH-hCCCCCCH-HHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 77 DMNYELVQACKLLDR-DNDGVVLRSELEALLIR-LGADPPTQ-EEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~-d~~G~i~~~el~~~l~~-~g~~~~~~-~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
.-+..|..+|+.||. +++|.|+..||+.++.. +|.. ++. .++..+++.+|.|+||.|+|+||+.++.
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~-ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHL-LKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhh-ccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 457789999999999 99999999999999999 8876 777 8999999999999999999999999884
No 23
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.31 E-value=2.5e-11 Score=100.64 Aligned_cols=138 Identities=17% Similarity=0.278 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCC---------
Q 027592 79 NYELVQACKLLDRDNDGVVLRSELEALLIRL-GADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSC--------- 148 (221)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~--------- 148 (221)
..+|...|+++|.+..|.|+...+..++..+ |++ ++-..+..-+ .....+|.|.|.+-...+.....
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~-LPWr~L~~kl--a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slv 539 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLN-LPWRLLRPKL--ANGSDDGKVEYKSTLDNLDTEVILEEAGSSLV 539 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCC-CcHHHhhhhc--cCCCcCcceehHhHHHHhhhhhHHHHHHhHHH
Confidence 3457788999999999999999999999876 555 5544444322 34456788888887777643221
Q ss_pred --CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCC---CCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 149 --EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGD---ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 149 --~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~---~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
.-.....+..+|+.+|.|+.|.|+.+||+.++.-+++ ..++++++.++.+.+|.|+||.|++.||+..++.
T Consensus 540 etLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 540 ETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 1123345677999999999999999999999987642 6789999999999999999999999999998864
No 24
>PTZ00184 calmodulin; Provisional
Probab=99.31 E-value=4.9e-11 Score=87.59 Aligned_cols=102 Identities=23% Similarity=0.406 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHH
Q 027592 117 EEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGM 196 (221)
Q Consensus 117 ~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i 196 (221)
..+...|..+|.+++|.|+++||..++.. .......+.+..+|+.+|.+++|.|+.+||..++..........+.+..+
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 45678889999999999999999998853 23345567899999999999999999999999988653244556778999
Q ss_pred HHhhcCCCCcceeHHHHHHHHHh
Q 027592 197 IALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 197 ~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
|..+|.+++|.|+.++|..++..
T Consensus 90 F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHhhCCCCCCeEeHHHHHHHHHH
Confidence 99999999999999999988854
No 25
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.30 E-value=7e-11 Score=86.90 Aligned_cols=104 Identities=23% Similarity=0.330 Sum_probs=92.7
Q ss_pred CCHHH---HHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCH
Q 027592 114 PTQEE---VKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTL 190 (221)
Q Consensus 114 ~~~~~---~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~ 190 (221)
++.++ +...|..+|.+++|.|++.+|..++. ..........+..+|..+|. |.|.|+..+|..+|...-+..-++
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~ 91 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKE 91 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcH
Confidence 55554 56678888999999999999999997 66688889999999999999 999999999999999775466779
Q ss_pred HHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 191 DDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 191 ~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
+++...|+.||.|++|.|++.|+..++..
T Consensus 92 Eel~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 92 EELREAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHHHHHHHHhCCCCCceecHHHHHHHHHh
Confidence 99999999999999999999999999864
No 26
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.28 E-value=3.1e-11 Score=80.92 Aligned_cols=67 Identities=24% Similarity=0.373 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----hCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 77 DMNYELVQACKLLD-RDNDG-VVLRSELEALLIR-----LGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 77 ~~~~~l~~~F~~~D-~d~~G-~i~~~el~~~l~~-----~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
.-+..|.++|+.|| .||+| .|+..||+.+|+. +|.. ++..++..+++.+|.|++|.|+|+||+.++.
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~-~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEI-KEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCC-CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 34778999999998 79999 5999999999999 8888 8999999999999999999999999998874
No 27
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.25 E-value=6.3e-11 Score=80.99 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
.++.+++..+.++|..+|.|++|.|+.+||..+++.+| ++..++..++..+|.+++|.|+|+||+.++.
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~---~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG---LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 36778999999999999999999999999999999865 6688999999999999999999999999884
No 28
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.24 E-value=4.6e-11 Score=80.06 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=59.0
Q ss_pred HHHHHHHhhhcC-CC-CCCcCHHHHHHHHHH---hCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 154 PELKETFDFFDA-DH-DGKITAEELFGVFTK---LGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 154 ~~l~~~f~~~D~-d~-dG~I~~~e~~~~l~~---~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
..+..+|..||. +| +|+|+.+||++++.. +| ..++++++.++++.+|.|++|+|+|+||+.++..
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg-~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIG-SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 457789999998 77 899999999999973 68 8899999999999999999999999999998864
No 29
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.24 E-value=4.7e-11 Score=90.71 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHH
Q 027592 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELK 157 (221)
Q Consensus 78 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~ 157 (221)
-++.++-+...||.+++|.|..+||..+...+ ...+.+|+.||.|+.|.|+..|+...+. ...-....+-+.
T Consensus 92 s~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~-~~Gy~Lspq~~~ 163 (221)
T KOG0037|consen 92 SIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRNVFRTYDRDRSGTIDSSELRQALT-QLGYRLSPQFYN 163 (221)
T ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHHHHHhcccCCCCcccHHHHHHHHH-HcCcCCCHHHHH
Confidence 45667888888999999999999999988654 5678899999999999999999999986 444666777788
Q ss_pred HHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCc--ceeHHHHHHHHH
Q 027592 158 ETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDG--FVCFEDFSRMME 218 (221)
Q Consensus 158 ~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g--~i~~~eF~~~l~ 218 (221)
.+++.||..+.|.|..++|.+.+..+. -+-+.|+..|.+..| .|+|++|+.+..
T Consensus 164 ~lv~kyd~~~~g~i~FD~FI~ccv~L~-------~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 164 LLVRKYDRFGGGRIDFDDFIQCCVVLQ-------RLTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred HHHHHhccccCCceeHHHHHHHHHHHH-------HHHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 889999988899999999999998776 567889999988877 488999987653
No 30
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.22 E-value=6.7e-11 Score=80.51 Aligned_cols=66 Identities=24% Similarity=0.306 Sum_probs=59.3
Q ss_pred hHHHHHHHhhhcC-CC-CCCcCHHHHHHHHHH-----hCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 153 EPELKETFDFFDA-DH-DGKITAEELFGVFTK-----LGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 153 ~~~l~~~f~~~D~-d~-dG~I~~~e~~~~l~~-----~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
...+..+|..||. || +|+|+.+||+.++.. +| ...+.+++..++..+|.+++|.|+|+||+.++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg-~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLK-NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhh-ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4578899999997 97 699999999999986 45 6789999999999999999999999999998864
No 31
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.22 E-value=3.1e-10 Score=86.26 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=99.0
Q ss_pred cccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCC-CCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHH
Q 027592 96 VVLRSELEALLIRLGADPPTQEEVKSMLSEVDRE-GDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAE 174 (221)
Q Consensus 96 ~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~-~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~ 174 (221)
.+....+.++.+.- . ++..++..+++.+-.+ +.|.++-++|..++...-...........+|+.||.|++|.|+..
T Consensus 8 ~~~~~~~e~l~~~t--~-f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~ 84 (193)
T KOG0044|consen 8 KLQPESLEQLVQQT--K-FSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFL 84 (193)
T ss_pred cCCcHHHHHHHHhc--C-CCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHH
Confidence 44444455554432 2 7789999999998765 589999999999997555567778888999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 175 ELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 175 e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
||...|..+- .+..++-+.=.|+.||.|++|.|+++|++.++..
T Consensus 85 Efi~als~~~-rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 85 EFICALSLTS-RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred HHHHHHHHHc-CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 9999999887 6677777778899999999999999999998864
No 32
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.20 E-value=9.6e-11 Score=79.42 Aligned_cols=67 Identities=24% Similarity=0.370 Sum_probs=58.7
Q ss_pred hHHHHHHHhhhc-CCCCCC-cCHHHHHHHHHH-hCC---CCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 153 EPELKETFDFFD-ADHDGK-ITAEELFGVFTK-LGD---ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 153 ~~~l~~~f~~~D-~d~dG~-I~~~e~~~~l~~-~~~---~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
.+.++.+|..|| .+++|+ |+.+||+.+|.. +|. ...+.++++.++..+|.|++|.|+|+||+.++..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 467899999997 999995 999999999985 541 3468899999999999999999999999998865
No 33
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.19 E-value=1.2e-10 Score=79.00 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=56.6
Q ss_pred HHHHHHHhhhc-CCCCC-CcCHHHHHHHHHHh-C---CCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 154 PELKETFDFFD-ADHDG-KITAEELFGVFTKL-G---DELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 154 ~~l~~~f~~~D-~d~dG-~I~~~e~~~~l~~~-~---~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
..+..+|..|| .||+| +|+.+||+.++... + ....++.+++.|+..+|.|++|.|+|+||+.++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 46778899999 78998 59999999999763 2 14457889999999999999999999999999864
No 34
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.17 E-value=8.5e-11 Score=71.51 Aligned_cols=52 Identities=35% Similarity=0.636 Sum_probs=49.1
Q ss_pred CCCCcCHHHHHHHHHHhCCCC-CCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 167 HDGKITAEELFGVFTKLGDEL-CTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 167 ~dG~I~~~e~~~~l~~~~~~~-~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
.+|.|+.++|+.+|..+| .. ++++++..||..+|.|++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g-~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLG-IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTT-SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhC-CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999998888 88 99999999999999999999999999999975
No 35
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.17 E-value=1.9e-10 Score=78.61 Aligned_cols=65 Identities=22% Similarity=0.317 Sum_probs=59.7
Q ss_pred ChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 152 CEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 152 ~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
....+..+|..||.+++|+|+.+|+..++...+ ++.+++..++..+|.+++|.|+|+||+.++..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~---~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG---LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 456788999999999999999999999999876 78999999999999999999999999998864
No 36
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=5.4e-10 Score=80.86 Aligned_cols=101 Identities=24% Similarity=0.290 Sum_probs=89.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHH-hCCCCCCHHHHHH
Q 027592 117 EEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTK-LGDELCTLDDCRG 195 (221)
Q Consensus 117 ~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~-~~~~~~~~~~~~~ 195 (221)
..+...|..++.+++|.|+++|+...+. ........+++..+..-+|.+|.|.|+.++|++++.. ++ ..-+.+++..
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmr-alGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~-e~dt~eEi~~ 110 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMR-ALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLG-ERDTKEEIKK 110 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHH-HcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHh-ccCcHHHHHH
Confidence 5688899999999999999999955553 4456677889999999999999999999999999775 56 6679999999
Q ss_pred HHHhhcCCCCcceeHHHHHHHHHh
Q 027592 196 MIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 196 i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
+|+.+|.|++|+|++.+|+.++..
T Consensus 111 afrl~D~D~~Gkis~~~lkrvake 134 (172)
T KOG0028|consen 111 AFRLFDDDKTGKISQRNLKRVAKE 134 (172)
T ss_pred HHHcccccCCCCcCHHHHHHHHHH
Confidence 999999999999999999998765
No 37
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.16 E-value=2.8e-10 Score=76.25 Aligned_cols=67 Identities=16% Similarity=0.346 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhCC-CC-CCcccHHHHHHHHHH---hCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 77 DMNYELVQACKLLDR-DN-DGVVLRSELEALLIR---LGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~-d~-~G~i~~~el~~~l~~---~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
+.+..|..+|.+||. || +|.|+.+||+.++.. +|.. ++.+++..+++.+|.+++|.|+|+||+.++.
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k-~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSK-LQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 567889999999998 67 899999999999973 6888 8999999999999999999999999998874
No 38
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.15 E-value=1.7e-10 Score=73.19 Aligned_cols=60 Identities=28% Similarity=0.360 Sum_probs=55.6
Q ss_pred HHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 157 KETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 157 ~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
+.+|..+|.+++|.|+.+|+..++..+| ++.+++..++..+|.+++|.|+|+||+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 5689999999999999999999999887 58999999999999999999999999998864
No 39
>PLN02964 phosphatidylserine decarboxylase
Probab=99.15 E-value=2.2e-10 Score=101.54 Aligned_cols=127 Identities=16% Similarity=0.305 Sum_probs=95.0
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHH--hCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHH---HHHH
Q 027592 85 ACKLLDRDNDGVVLRSELEALLIR--LGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPE---LKET 159 (221)
Q Consensus 85 ~F~~~D~d~~G~i~~~el~~~l~~--~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~---l~~~ 159 (221)
.|..+|.+ .++.+++...-.. ..+.....+++.+.|..+|.+++|.+ +...+..+. ......++ +..+
T Consensus 112 ~~~~~~~~---~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG---~~~pte~e~~fi~~m 184 (644)
T PLN02964 112 RISVFETN---RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCS---IEDPVETERSFARRI 184 (644)
T ss_pred EEEEEecC---CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhC---CCCCCHHHHHHHHHH
Confidence 45556655 5666666654432 11110223466778899999999997 444444331 01233333 8999
Q ss_pred HhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 160 FDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 160 f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
|..+|.|++|.|+.+||..++..++ ...+++++..+|+.+|.|++|.|+++||..+|..
T Consensus 185 f~~~D~DgdG~IdfdEFl~lL~~lg-~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 185 LAIVDYDEDGQLSFSEFSDLIKAFG-NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHhCCCCCCeEcHHHHHHHHHHhc-cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999999999999999999998 8889999999999999999999999999999876
No 40
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.14 E-value=2.9e-10 Score=76.41 Aligned_cols=68 Identities=16% Similarity=0.300 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhCC--CCCCcccHHHHHHHHHH-hCCC---CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 77 DMNYELVQACKLLDR--DNDGVVLRSELEALLIR-LGAD---PPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~--d~~G~i~~~el~~~l~~-~g~~---~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
++++.+..+|..||. |++|.|+..||..++.. +|.. ..+..++..++..+|.+++|.|+|++|+.++.
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 678899999999999 89999999999999986 5543 13589999999999999999999999999884
No 41
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.14 E-value=3.3e-10 Score=77.11 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhCC-CC-CCcccHHHHHHHHHH-----hCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 77 DMNYELVQACKLLDR-DN-DGVVLRSELEALLIR-----LGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~-d~-~G~i~~~el~~~l~~-----~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
.-...+..+|..||. |+ +|.|+..||..++.. +|.. ++..++..++..+|.+++|.|+|+||+.++.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~-~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQ-KDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcc-ccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 346779999999997 97 699999999999986 4667 8899999999999999999999999998883
No 42
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.13 E-value=4.6e-10 Score=76.06 Aligned_cols=66 Identities=23% Similarity=0.413 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-hC----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 78 MNYELVQACKLLD-RDNDG-VVLRSELEALLIR-LG----ADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 78 ~~~~l~~~F~~~D-~d~~G-~i~~~el~~~l~~-~g----~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
-++.+.++|..|| .+++| .|+..||..+++. +| .. ++..++..++..+|.+++|.|+|++|+.++.
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~-~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQ-KDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCC-CCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 4677999999997 99999 5999999999986 44 34 6889999999999999999999999999884
No 43
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.12 E-value=5.9e-10 Score=75.60 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHHh-----CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 77 DMNYELVQACKLLD-RDNDG-VVLRSELEALLIRL-----GADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 77 ~~~~~l~~~F~~~D-~d~~G-~i~~~el~~~l~~~-----g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
.-+..+.++|+.|| .|++| .|+..||+.++... +.. .+..++..++..+|.|++|.|+|+||+.++.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~-~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQ-KDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccc-cCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 34677899999999 78998 59999999999763 333 5778999999999999999999999999884
No 44
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.11 E-value=3.8e-10 Score=75.81 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=58.3
Q ss_pred hHHHHHHHhhhcC--CCCCCcCHHHHHHHHHH-hCCCCC----CHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 153 EPELKETFDFFDA--DHDGKITAEELFGVFTK-LGDELC----TLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 153 ~~~l~~~f~~~D~--d~dG~I~~~e~~~~l~~-~~~~~~----~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
.+.++.+|..||. +++|+|+.+||..++.. +| ..+ +.+++..++..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g-~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELP-NFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh-hhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 4568889999999 89999999999999986 45 444 5899999999999999999999999998864
No 45
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=99.10 E-value=1.8e-10 Score=88.88 Aligned_cols=138 Identities=16% Similarity=0.149 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC---CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCC------
Q 027592 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLG---ADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSC------ 148 (221)
Q Consensus 78 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g---~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~------ 148 (221)
-.+.|+.+|.+.|.|.||.|+..|+.+++..-. +. -..++-...|+..|.|+||.|+|+||..-+.....
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfq-eameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQ-EAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHH-HHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 457899999999999999999999988876531 11 23345567788899999999999999887753222
Q ss_pred -------CCCChHHHHHHHhhhcCCCCCCcCH---------HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHH
Q 027592 149 -------EPACEPELKETFDFFDADHDGKITA---------EELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFED 212 (221)
Q Consensus 149 -------~~~~~~~l~~~f~~~D~d~dG~I~~---------~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~e 212 (221)
.....++-.+.|..-+.+..|..+. +||..+|..-.+..+-...+..|++.+|.|+|.+|+..|
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 1112222333455555566666555 999999886654567777889999999999999999999
Q ss_pred HHHH
Q 027592 213 FSRM 216 (221)
Q Consensus 213 F~~~ 216 (221)
|+..
T Consensus 258 Fisl 261 (362)
T KOG4251|consen 258 FISL 261 (362)
T ss_pred hhcC
Confidence 9874
No 46
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.08 E-value=2.5e-09 Score=99.40 Aligned_cols=138 Identities=20% Similarity=0.308 Sum_probs=112.1
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCC-------HHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 027592 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPT-------QEEVKSMLSEVDREGDGYIPLEALISRV 143 (221)
Q Consensus 71 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~-------~~~~~~l~~~~d~~~~g~I~~~ef~~~~ 143 (221)
...+|+++..++.-+|..||.+.+|+++..+|..||+.+|++ ++ +.++..++..+|.+.+|+|+..+|+.+|
T Consensus 2244 ~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~-lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2244 HNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYD-LPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred cCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCC-CcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 345788999999999999999999999999999999999987 52 2379999999999999999999999999
Q ss_pred cCCCC-CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhh----cCC----CCcceeHHHHH
Q 027592 144 GNSSC-EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV----DKN----GDGFVCFEDFS 214 (221)
Q Consensus 144 ~~~~~-~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~----d~~----~~g~i~~~eF~ 214 (221)
..... .....++|..+|+.+|. +.-||+.+++.+- ++.++++-++..+ |.. --+.|+|.+|+
T Consensus 2323 i~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~--------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv 2393 (2399)
T KOG0040|consen 2323 ISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN--------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFV 2393 (2399)
T ss_pred HhcccccccchHHHHHHHHHhhc-CCccccHHHHHhc--------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHH
Confidence 75555 44556699999999999 8999999988764 4556655554443 332 23359999999
Q ss_pred HHHH
Q 027592 215 RMME 218 (221)
Q Consensus 215 ~~l~ 218 (221)
..+.
T Consensus 2394 ~sl~ 2397 (2399)
T KOG0040|consen 2394 NSLF 2397 (2399)
T ss_pred HHHh
Confidence 8764
No 47
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.07 E-value=9.4e-10 Score=73.84 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=57.5
Q ss_pred hHHHHHHHhh-hcCCCCC-CcCHHHHHHHHHHhC----CCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 153 EPELKETFDF-FDADHDG-KITAEELFGVFTKLG----DELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 153 ~~~l~~~f~~-~D~d~dG-~I~~~e~~~~l~~~~----~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
...+..+|.. +|.+|+| +|+.+||+.++.... ....++.+++.++..+|.|+||.|+|+||+.++..
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4567889988 7888986 999999999999752 14567889999999999999999999999998864
No 48
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.06 E-value=1.9e-09 Score=90.20 Aligned_cols=144 Identities=19% Similarity=0.261 Sum_probs=114.4
Q ss_pred cccccccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh----cCCCCCcccHHHHHHH
Q 027592 67 WSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV----DREGDGYIPLEALISR 142 (221)
Q Consensus 67 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~----d~~~~g~I~~~ef~~~ 142 (221)
+.+..+-++.+....+.-.|..+|.|+||.|+.++|...-.. .++.-.+.++|... -...+|+|+|++|+.+
T Consensus 265 ~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~----tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~F 340 (493)
T KOG2562|consen 265 INQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH----TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDF 340 (493)
T ss_pred hhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc----chhhHHHHHHHhhccccceeeecCcccHHHHHHH
Confidence 456666778888888888899999999999999999877532 27778899999933 2346899999999999
Q ss_pred HcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHh-------CCCCCCH-HHHHHHHHhhcCCCCcceeHHHHH
Q 027592 143 VGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKL-------GDELCTL-DDCRGMIALVDKNGDGFVCFEDFS 214 (221)
Q Consensus 143 ~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~-------~~~~~~~-~~~~~i~~~~d~~~~g~i~~~eF~ 214 (221)
+. .........-+..+|+.+|.+++|.|+..|++-+.... +-+.++- +.+++|+..+-....++|++.+|.
T Consensus 341 il-A~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk 419 (493)
T KOG2562|consen 341 IL-AEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLK 419 (493)
T ss_pred HH-HhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHh
Confidence 86 33355666788999999999999999999999886643 2233443 446888998877788899999998
Q ss_pred H
Q 027592 215 R 215 (221)
Q Consensus 215 ~ 215 (221)
.
T Consensus 420 ~ 420 (493)
T KOG2562|consen 420 G 420 (493)
T ss_pred h
Confidence 6
No 49
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.05 E-value=1.6e-09 Score=66.97 Aligned_cols=61 Identities=44% Similarity=0.722 Sum_probs=57.9
Q ss_pred HHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHH
Q 027592 156 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 217 (221)
Q Consensus 156 l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l 217 (221)
+..+|..+|.+++|.|+.+|+..++..++ ...+.+.+..++..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56789999999999999999999999999 99999999999999999999999999999876
No 50
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.03 E-value=1.3e-09 Score=76.62 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=55.2
Q ss_pred CChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 027592 151 ACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 151 ~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~ 218 (221)
.....+..+|..+|.|+||+|+.+|+..+. ++ ..+..+..+|..+|.|++|.||++||+.++.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~---~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD---PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc---chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 456788999999999999999999999876 33 4567789999999999999999999999983
No 51
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.02 E-value=1.4e-09 Score=68.99 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=54.1
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 83 VQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 83 ~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
+++|..+|.|++|.|+.+|+..++..+| .+..++..++..+|.+++|.|+|+||+.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 5789999999999999999999999876 4688999999999999999999999998874
No 52
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.02 E-value=3.7e-09 Score=80.29 Aligned_cols=102 Identities=27% Similarity=0.328 Sum_probs=82.3
Q ss_pred HHHHHHHhCCCCCCc-ccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCC--hH----
Q 027592 82 LVQACKLLDRDNDGV-VLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPAC--EP---- 154 (221)
Q Consensus 82 l~~~F~~~D~d~~G~-i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~--~~---- 154 (221)
..++|..++.+++|. |+.++|...+..+-.......-+.-.|+.||.+++|.|+.+|+..++......... .+
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 356788899998888 99999999998876662334488999999999999999999999988654443222 22
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHHHHHHHh
Q 027592 155 ELKETFDFFDADHDGKITAEELFGVFTKL 183 (221)
Q Consensus 155 ~l~~~f~~~D~d~dG~I~~~e~~~~l~~~ 183 (221)
-+...|..+|.|+||+|+.+||..++...
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 34457899999999999999999999754
No 53
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.00 E-value=2.5e-09 Score=75.11 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 027592 76 LDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRV 143 (221)
Q Consensus 76 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~ 143 (221)
+.....+..+|..+|.|+||.|+.+||..+. .. ..+..+..+|..+|.|+||.|+++||+.++
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~-~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LD-PNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----cc-chHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4677889999999999999999999999876 33 567788899999999999999999999998
No 54
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.98 E-value=3.2e-09 Score=65.55 Aligned_cols=61 Identities=39% Similarity=0.689 Sum_probs=57.3
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 027592 82 LVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRV 143 (221)
Q Consensus 82 l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~ 143 (221)
+..+|..+|.+++|.|+..|+..++..++.. .+.+.+..++..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEG-LSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 6788999999999999999999999999988 999999999999999999999999998875
No 55
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.97 E-value=3.1e-09 Score=88.33 Aligned_cols=136 Identities=13% Similarity=0.192 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCCH-HHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHH
Q 027592 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLG-ADPPTQ-EEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPE 155 (221)
Q Consensus 78 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~~-~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~ 155 (221)
+++-+.--|..+|...+|.|+..+|..+|-.+. .+.... ..+.++-+.++.++ -.|+++||..++. ...+.+.
T Consensus 316 q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~-~gISl~Ef~~Ff~----Fl~~l~d 390 (489)
T KOG2643|consen 316 QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDG-KGISLQEFKAFFR----FLNNLND 390 (489)
T ss_pred HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCC-CCcCHHHHHHHHH----HHhhhhH
Confidence 445566669999998889999999998887664 221111 24566777776654 3499999998873 1233334
Q ss_pred HHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 156 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 156 l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
+..+...|-. -.+.|+..+|+++.....+..+++..++.+|..||.|+||.|+++||+.+|.+
T Consensus 391 fd~Al~fy~~-Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 391 FDIALRFYHM-AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHHHHHH-cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 4444444432 46789999999999876449999999999999999999999999999999975
No 56
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.95 E-value=7.3e-09 Score=69.51 Aligned_cols=67 Identities=13% Similarity=0.268 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHH-hCCCCCC-cccHHHHHHHHHHhC-----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 77 DMNYELVQACKL-LDRDNDG-VVLRSELEALLIRLG-----ADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 77 ~~~~~l~~~F~~-~D~d~~G-~i~~~el~~~l~~~g-----~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
..+..|..+|+. +|.+|+| .|+.+||..++.... .. ....++..++..+|.|++|.|+|+||+.++.
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~-~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQ-KDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCC-CCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 457889999999 7788876 999999999998863 23 5678999999999999999999999998874
No 57
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.92 E-value=8.3e-09 Score=77.39 Aligned_cols=109 Identities=23% Similarity=0.299 Sum_probs=88.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCC-CCC
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSC-EPA 151 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~-~~~ 151 (221)
.|+..+|..+..+|+.||.+.||+|+..||..+|.++|-+ -+.-.+..++...|.|.+|+|+|.||+-++..... ...
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap-QTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAP-QTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCc-hhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 4677899999999999999999999999999999999988 88889999999999999999999999998864333 222
Q ss_pred ChHHHHHHHh--hhcCCCCCCcCHHHHHHHHHH
Q 027592 152 CEPELKETFD--FFDADHDGKITAEELFGVFTK 182 (221)
Q Consensus 152 ~~~~l~~~f~--~~D~d~dG~I~~~e~~~~l~~ 182 (221)
....+..+=+ ..|...-|......|-..=-.
T Consensus 171 ~ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~ 203 (244)
T KOG0041|consen 171 EDSGLLRLARLSEVDVSKEGVSGAKNFFEAKIE 203 (244)
T ss_pred cchHHHHHHHhcccchhhhhhhhHHHHHHHHHH
Confidence 2333333333 478888888888877765443
No 58
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.89 E-value=7.8e-09 Score=69.35 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=56.9
Q ss_pred hHHHHHHHhhhcCC--CCCCcCHHHHHHHHH-HhCCCCCC----HHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 153 EPELKETFDFFDAD--HDGKITAEELFGVFT-KLGDELCT----LDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 153 ~~~l~~~f~~~D~d--~dG~I~~~e~~~~l~-~~~~~~~~----~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
...+..+|..|+.. ++|+|+.+||+.++. .++ ..++ +++++.+|..+|.|++|.|+|+||+.++..
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g-~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELP-NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhh-HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 34677889999866 479999999999997 556 6666 899999999999999999999999998864
No 59
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.88 E-value=8.4e-09 Score=62.58 Aligned_cols=52 Identities=37% Similarity=0.673 Sum_probs=45.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 93 NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 93 ~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
.+|.|+.++|..++..+|...+++.++..+|..+|.+++|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 3789999999999988877558888999999999999999999999998874
No 60
>PF14658 EF-hand_9: EF-hand domain
Probab=98.82 E-value=1.7e-08 Score=62.77 Aligned_cols=59 Identities=24% Similarity=0.459 Sum_probs=56.0
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCCCC-CcccHHHHHHHHc
Q 027592 85 ACKLLDRDNDGVVLRSELEALLIRLGA-DPPTQEEVKSMLSEVDREGD-GYIPLEALISRVG 144 (221)
Q Consensus 85 ~F~~~D~d~~G~i~~~el~~~l~~~g~-~~~~~~~~~~l~~~~d~~~~-g~I~~~ef~~~~~ 144 (221)
+|..||.++.|.|...++..+|++++. . +.+.+++.+...+|.++. |.|+|+.|+.+|.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~-p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRS-PEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCC-CcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 689999999999999999999999998 6 999999999999999887 9999999999984
No 61
>PF14658 EF-hand_9: EF-hand domain
Probab=98.82 E-value=2.2e-08 Score=62.29 Aligned_cols=62 Identities=23% Similarity=0.427 Sum_probs=57.5
Q ss_pred HHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCC-cceeHHHHHHHHHh
Q 027592 158 ETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGD-GFVCFEDFSRMMEL 219 (221)
Q Consensus 158 ~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~-g~i~~~eF~~~l~~ 219 (221)
.+|.+||.++.|.|...++..+|+.++....++.+++.+...+|.++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 379999999999999999999999999338899999999999999987 99999999999975
No 62
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.82 E-value=3.8e-08 Score=81.94 Aligned_cols=133 Identities=15% Similarity=0.255 Sum_probs=92.9
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHh------CCC------C-CC-HHHHH--HHHHhhcCCCCCcccHHHHHHHH
Q 027592 80 YELVQACKLLDRDNDGVVLRSELEALLIRL------GAD------P-PT-QEEVK--SMLSEVDREGDGYIPLEALISRV 143 (221)
Q Consensus 80 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~------g~~------~-~~-~~~~~--~l~~~~d~~~~g~I~~~ef~~~~ 143 (221)
..+.-+|+.||.||||.|+.+||..+..-. |.. + .+ ...+. -+...|+.++++++++++|..++
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 346778999999999999999998876433 220 0 00 01121 23344688999999999999999
Q ss_pred cCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHH--HHHHHHHhhcCCCCcceeHHHHHHHHH
Q 027592 144 GNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLD--DCRGMIALVDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 144 ~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~--~~~~i~~~~d~~~~g~i~~~eF~~~l~ 218 (221)
. ....+-++.-|..+|+...|.|+..+|..+|........-.. .+..+-+.++.+ +-.|+++||..++.
T Consensus 313 e-----~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 313 E-----NLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred H-----HHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 4 234455667899999999999999999999987642222221 245556666555 44599999998864
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.80 E-value=3.2e-08 Score=66.38 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhCCC--CCCcccHHHHHHHHH-HhCCCCCC----HHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 77 DMNYELVQACKLLDRD--NDGVVLRSELEALLI-RLGADPPT----QEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~d--~~G~i~~~el~~~l~-~~g~~~~~----~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
.-+..+..+|+.|+.. ++|.|+..||..++. .+|.. ++ ..++..+|..+|.+++|.|+|+||+.++.
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~-~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNF-LKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHh-hccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 4577899999999966 479999999999997 45544 55 89999999999999999999999999884
No 64
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.80 E-value=7e-08 Score=79.90 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHH
Q 027592 116 QEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRG 195 (221)
Q Consensus 116 ~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~ 195 (221)
+..++.+|+.+|.+++|.|+..+....+..........+....+|..+|.|.||.++++||++.+..- +.++..
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------E~~l~~ 86 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------ELELYR 86 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------HHHHHH
Confidence 45789999999999999999999998887555556788899999999999999999999999999864 377899
Q ss_pred HHHhhcCCCCcceeHHHHHHHHHh
Q 027592 196 MIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 196 i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
+|..+|.++||.|+..|.-+.|..
T Consensus 87 ~F~~iD~~hdG~i~~~Ei~~~l~~ 110 (463)
T KOG0036|consen 87 IFQSIDLEHDGKIDPNEIWRYLKD 110 (463)
T ss_pred HHhhhccccCCccCHHHHHHHHHH
Confidence 999999999999999999888764
No 65
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.76 E-value=3.1e-08 Score=74.39 Aligned_cols=67 Identities=30% Similarity=0.378 Sum_probs=57.1
Q ss_pred ChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 152 CEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 152 ~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
....+..+|+.||.+.||+|+..|++.+|..+| .+-+.--+..|+...|.|.+|+|+|-||+-+++.
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg-apQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLG-APQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhC-CchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 345677889999999999999999999999999 7777777888999999999999999999877653
No 66
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.58 E-value=2.3e-07 Score=63.88 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=59.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
.+++++...+..+|..+|. ++|.|+.++...++...| ++.+.+..+|...|.+++|.++++||+.++.
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~---L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG---LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT---SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC---CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 3566899999999999985 689999999999999877 5689999999999999999999999998873
No 67
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.57 E-value=7.3e-08 Score=50.40 Aligned_cols=26 Identities=50% Similarity=0.685 Sum_probs=12.2
Q ss_pred HHHHHhhhcCCCCCCcCHHHHHHHHH
Q 027592 156 LKETFDFFDADHDGKITAEELFGVFT 181 (221)
Q Consensus 156 l~~~f~~~D~d~dG~I~~~e~~~~l~ 181 (221)
++.+|+.||.|+||+|+.+||..+++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 34444444444444444444444443
No 68
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=1.7e-06 Score=76.73 Aligned_cols=139 Identities=14% Similarity=0.223 Sum_probs=112.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcC--------
Q 027592 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGN-------- 145 (221)
Q Consensus 74 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~-------- 145 (221)
+|.++.....+.|..+-. +.|+|+..+-++++-.-| ++...+..+|...|.|.||+++..||--.|..
T Consensus 10 vT~~Er~K~~~qF~~Lkp-~~gfitg~qArnfflqS~---LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~ 85 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKP-GQGFITGDQARNFFLQSG---LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGI 85 (1118)
T ss_pred cchHHHHHHHHHHhccCC-CCCccchHhhhhhHHhcC---CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCC
Confidence 455677777777777754 689999999999887766 55778889999999999999999999765544
Q ss_pred -----------------------------------------------------------------CC-------------
Q 027592 146 -----------------------------------------------------------------SS------------- 147 (221)
Q Consensus 146 -----------------------------------------------------------------~~------------- 147 (221)
.+
T Consensus 86 ~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl 165 (1118)
T KOG1029|consen 86 QLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPL 165 (1118)
T ss_pred cCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Confidence 00
Q ss_pred C-----------------------CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCC
Q 027592 148 C-----------------------EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNG 204 (221)
Q Consensus 148 ~-----------------------~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~ 204 (221)
. .....-..+.+|+.+|....|+|+...-+.+|...+ ++...+..|+.+-|.|+
T Consensus 166 ~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~---Lpq~~LA~IW~LsDvd~ 242 (1118)
T KOG1029|consen 166 PHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG---LPQNQLAHIWTLSDVDG 242 (1118)
T ss_pred CCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC---CchhhHhhheeeeccCC
Confidence 0 001122456789999999999999999999998866 99999999999999999
Q ss_pred CcceeHHHHHHHHHh
Q 027592 205 DGFVCFEDFSRMMEL 219 (221)
Q Consensus 205 ~g~i~~~eF~~~l~~ 219 (221)
||+|+.+||+-.|..
T Consensus 243 DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 243 DGKLSADEFILAMHL 257 (1118)
T ss_pred CCcccHHHHHHHHHH
Confidence 999999999987764
No 69
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.49 E-value=2.1e-07 Score=48.62 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 027592 81 ELVQACKLLDRDNDGVVLRSELEALLIRL 109 (221)
Q Consensus 81 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~ 109 (221)
++.++|+.+|.|+||.|+.+||..++.++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46778888888888888888888887653
No 70
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.49 E-value=8.4e-07 Score=64.06 Aligned_cols=66 Identities=24% Similarity=0.311 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 78 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
..+.|..+|..||.++.|.|..+.|+.+|...|-. ++.+++..+|+.+..+..|.|+|.+|+.++.
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr-~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDR-FTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhccc-CCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 35678999999999999999999999999999988 9999999999999888889999999998884
No 71
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.47 E-value=9.1e-07 Score=60.93 Aligned_cols=66 Identities=30% Similarity=0.476 Sum_probs=57.7
Q ss_pred CCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 150 PACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 150 ~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
.........+|..+|. ++|.|+.++.+.++...+ ++.+.+..||...|.|++|.++++||+-.|+.
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~---L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG---LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT---SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC---CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 3445677889999985 689999999999999866 99999999999999999999999999988864
No 72
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.45 E-value=4.2e-07 Score=73.16 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=97.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcC
Q 027592 93 NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKIT 172 (221)
Q Consensus 93 ~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~ 172 (221)
+.+.|...||..-++ . +-..-+..+|..||.+++|.++|.|.+..++.........+-++.+|+.|+.+-||++.
T Consensus 240 kg~~igi~efa~~l~---v--pvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~g 314 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNLR---V--PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISG 314 (412)
T ss_pred cCCCcceeEeeeeee---c--chhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccc
Confidence 344455555544332 1 22356788999999999999999999999986666888888999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHhC
Q 027592 173 AEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 220 (221)
Q Consensus 173 ~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~~ 220 (221)
.++|..+|+... ++.+-.+-.+|...+...+|+|++.+|.+++...
T Consensus 315 e~~ls~ilq~~l--gv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 315 EHILSLILQVVL--GVEVLRVPVLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred hHHHHHHHHHhc--CcceeeccccchhhhcccCcceeHHHHHHHHHhC
Confidence 999999998642 2555567789999999999999999999998654
No 73
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.43 E-value=2.4e-06 Score=56.95 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=52.0
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHHHHHHHHh-----CCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 154 PELKETFDFFDADHDGKITAEELFGVFTKL-----GDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 154 ~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~-----~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
..+..+|..|.. +.+.|+..||+.++..- . ..-.+..++.++..+|.|+||.|+|.||+.++..
T Consensus 8 ~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~-~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 8 EKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLK-NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 456678888874 46799999999999742 3 4557788999999999999999999999998754
No 74
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.42 E-value=1.5e-06 Score=62.16 Aligned_cols=97 Identities=18% Similarity=0.253 Sum_probs=77.8
Q ss_pred HHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHH----hh
Q 027592 87 KLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETF----DF 162 (221)
Q Consensus 87 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f----~~ 162 (221)
..|-.||.|.++.++|..++.-+.-.++.+-.+...|+.||-|+|+.|.-+++...+...-......+++..+. +-
T Consensus 78 e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieE 157 (189)
T KOG0038|consen 78 EVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEE 157 (189)
T ss_pred HHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 34557999999999999988766443355666778899999999999999999999875555666666666554 56
Q ss_pred hcCCCCCCcCHHHHHHHHHHh
Q 027592 163 FDADHDGKITAEELFGVFTKL 183 (221)
Q Consensus 163 ~D~d~dG~I~~~e~~~~l~~~ 183 (221)
.|.||||.|+..||.+++...
T Consensus 158 AD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 158 ADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred hcCCCCCcccHHHHHHHHHhC
Confidence 799999999999999998753
No 75
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.40 E-value=7.3e-06 Score=72.99 Aligned_cols=137 Identities=15% Similarity=0.261 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHH
Q 027592 76 LDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPE 155 (221)
Q Consensus 76 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~ 155 (221)
.+....+..+|...|++++|.++..+...++..+... +....+..+|+..+..+++++.+.+|..+.... ....+
T Consensus 132 ~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~-l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~----~~rpe 206 (746)
T KOG0169|consen 132 SRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQ-LSESKARRLFKESDNSQTGKLEEEEFVKFRKEL----TKRPE 206 (746)
T ss_pred chHHHHHHHHHHHHccccccccchhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhccceehHHHHHHHHHhh----ccCch
Confidence 3566778999999999999999999999999999988 999999999999988899999999999988422 22227
Q ss_pred HHHHHhhhcCCCCCCcCHHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCC----CCcceeHHHHHHHHH
Q 027592 156 LKETFDFFDADHDGKITAEELFGVFTKLGD-ELCTLDDCRGMIALVDKN----GDGFVCFEDFSRMME 218 (221)
Q Consensus 156 l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~-~~~~~~~~~~i~~~~d~~----~~g~i~~~eF~~~l~ 218 (221)
+..+|..+-.+ .++++.+++..+|...++ ...+.+.+.+|++.+... ..+.++++.|..+|-
T Consensus 207 v~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~ 273 (746)
T KOG0169|consen 207 VYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLF 273 (746)
T ss_pred HHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhc
Confidence 88888887665 999999999999998753 778889999999888533 456799999999985
No 76
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.39 E-value=4.4e-06 Score=55.73 Aligned_cols=66 Identities=12% Similarity=0.246 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-----CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRL-----GADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-----g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
.-+..|..+|.+|-.+ .+.|+..||..++.+- ... .....+..+++.+|.|+||.|+|.||+.++.
T Consensus 5 ~ai~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~-~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 5 HSMEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQ-NDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCC-CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 3467789999999854 5699999999999653 222 5678899999999999999999999999885
No 77
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.37 E-value=2.5e-06 Score=72.23 Aligned_cols=103 Identities=22% Similarity=0.288 Sum_probs=69.2
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcC-CCCCCCChHHHHHHHhhhcCCCCCCcCHHH
Q 027592 97 VLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGN-SSCEPACEPELKETFDFFDADHDGKITAEE 175 (221)
Q Consensus 97 i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~-~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e 175 (221)
++..+|+..+. ..++..+.+..=++.|-.+. ...++++.-... ..........++.+|+.||.+++|+|+.+|
T Consensus 282 ~~e~~f~~~~~---~~~ma~ekl~egi~~F~~d~---~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E 355 (391)
T PRK12309 282 MDRATFDKMHA---EDRMASEKLDEGIKGFSKAL---ETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREE 355 (391)
T ss_pred CCHHHHHHHhc---cCchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHH
Confidence 45556665443 22233444444444443222 334444442221 233667788899999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 176 LFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
|. + ++.+|..+|.|++|.|+++||..++..
T Consensus 356 ~~------~--------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 356 WL------G--------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HH------H--------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 93 1 578999999999999999999998763
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.34 E-value=6e-07 Score=47.80 Aligned_cols=30 Identities=47% Similarity=0.764 Sum_probs=24.1
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHHHHHH-HhC
Q 027592 155 ELKETFDFFDADHDGKITAEELFGVFT-KLG 184 (221)
Q Consensus 155 ~l~~~f~~~D~d~dG~I~~~e~~~~l~-~~~ 184 (221)
+++.+|+.||.|++|+|+.+||..+|. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467889999999999999999999888 454
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.33 E-value=9.1e-07 Score=47.09 Aligned_cols=30 Identities=43% Similarity=0.655 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH-HhC
Q 027592 81 ELVQACKLLDRDNDGVVLRSELEALLI-RLG 110 (221)
Q Consensus 81 ~l~~~F~~~D~d~~G~i~~~el~~~l~-~~g 110 (221)
+++.+|+.+|.|++|.|+.+||..++. ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999998 565
No 80
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.30 E-value=1.2e-05 Score=57.12 Aligned_cols=105 Identities=17% Similarity=0.255 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCC--CCCCcCHHHHHHHHHHhCC--CCCC
Q 027592 114 PTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDAD--HDGKITAEELFGVFTKLGD--ELCT 189 (221)
Q Consensus 114 ~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d--~dG~I~~~e~~~~l~~~~~--~~~~ 189 (221)
....++..+|..||..+||+|++.+.-.++. .........++..+...++.+ +--.|++++|.-+++.+.+ ...+
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlR-alG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t 86 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLR-ALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGT 86 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHH-HhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCc
Confidence 4457899999999999999999999888875 344666777888888888877 5678999999999998753 5577
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 190 LDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 190 ~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
-+++-+-++-+|++++|.|...|+..+|..
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHH
Confidence 777888899999999999999999888753
No 81
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.24 E-value=2.6e-06 Score=66.25 Aligned_cols=136 Identities=22% Similarity=0.248 Sum_probs=98.9
Q ss_pred HHHHHHHHHhCCCC-CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCC--C------C
Q 027592 80 YELVQACKLLDRDN-DGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSC--E------P 150 (221)
Q Consensus 80 ~~l~~~F~~~D~d~-~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~--~------~ 150 (221)
+.+...+...|..+ +-.++..||..+|.---........+..+...+|.|+|..++..+|+........ . .
T Consensus 198 enlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddn 277 (362)
T KOG4251|consen 198 ENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDN 277 (362)
T ss_pred HhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHH
Confidence 34444455555432 5567778998888532111133456788899999999999999999987643221 1 1
Q ss_pred CChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHH
Q 027592 151 ACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 216 (221)
Q Consensus 151 ~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~ 216 (221)
...+..++.=..+|.+.||.+|.+|+..++...+ ....-.++..++...|.|++.+++.+|.+..
T Consensus 278 wvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n-~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 278 WVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQN-FRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHHHHHHHHhhcCCccceeHHHHHhhcCchh-hhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 1122334444788999999999999999998888 7788889999999999999999999998753
No 82
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.20 E-value=3.5e-05 Score=65.60 Aligned_cols=104 Identities=13% Similarity=0.260 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-hCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHH
Q 027592 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIR-LGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPE 155 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~ 155 (221)
++...+.--|...+.++.-..+.++|....-- ++.+-..++.+.-+-...|..+||.|+|+||+.+=. ..+ .....
T Consensus 33 ~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~-~lC--~pDal 109 (694)
T KOG0751|consen 33 KELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFES-VLC--APDAL 109 (694)
T ss_pred HHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHh-hcc--CchHH
Confidence 34444444445567788889999999665443 344424445555555666788999999999998653 222 33566
Q ss_pred HHHHHhhhcCCCCCCcCHHHHHHHHHHh
Q 027592 156 LKETFDFFDADHDGKITAEELFGVFTKL 183 (221)
Q Consensus 156 l~~~f~~~D~d~dG~I~~~e~~~~l~~~ 183 (221)
...+|..||..++|.++.+++..++...
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 7889999999999999999999999865
No 83
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.10 E-value=1.7e-05 Score=67.17 Aligned_cols=59 Identities=31% Similarity=0.525 Sum_probs=52.6
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHh
Q 027592 110 GADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKL 183 (221)
Q Consensus 110 g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~ 183 (221)
|.. .....+..+|..+|.+++|.|+++||+. ...+|..+|.|+||.|+.+||.+++...
T Consensus 328 ~~~-~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGE-AFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccC-hhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 555 7888999999999999999999999952 4678999999999999999999998753
No 84
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.07 E-value=1.8e-05 Score=67.67 Aligned_cols=77 Identities=25% Similarity=0.305 Sum_probs=67.1
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC--CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcC
Q 027592 68 SDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGAD--PPTQEEVKSMLSEVDREGDGYIPLEALISRVGN 145 (221)
Q Consensus 68 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~ 145 (221)
+-+...+|+++..++.+.|...| |++|+|+..|+..++...+.. ....++++.++...+.|.+|.|+|++|+.++..
T Consensus 7 ~~~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 7 PWLQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred hhhcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 34556788899999999999999 999999999999999988653 134789999999999999999999999997753
No 85
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.06 E-value=4.2e-06 Score=42.09 Aligned_cols=23 Identities=48% Similarity=0.761 Sum_probs=12.2
Q ss_pred HHHHhhhcCCCCCCcCHHHHHHH
Q 027592 157 KETFDFFDADHDGKITAEELFGV 179 (221)
Q Consensus 157 ~~~f~~~D~d~dG~I~~~e~~~~ 179 (221)
+.+|+.+|.|+||.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34555555555555555555543
No 86
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.02 E-value=4.1e-05 Score=64.68 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=101.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHH--HHHHhCC-----------CCCCHHHH---HHHHHhhcCCCCCcccHHHHHHHH
Q 027592 80 YELVQACKLLDRDNDGVVLRSELEA--LLIRLGA-----------DPPTQEEV---KSMLSEVDREGDGYIPLEALISRV 143 (221)
Q Consensus 80 ~~l~~~F~~~D~d~~G~i~~~el~~--~l~~~g~-----------~~~~~~~~---~~l~~~~d~~~~g~I~~~ef~~~~ 143 (221)
-.+.++|-.+++-++|.|+..|+.. ++..+.. +..+-+.. ...|..+|++.+|.|+-+++..+-
T Consensus 225 tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~ 304 (493)
T KOG2562|consen 225 TVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG 304 (493)
T ss_pred HHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHh
Confidence 3467888889999999999999854 3333310 01222222 334777899999999999988776
Q ss_pred cCCCCCCCChHHHHHHHh----hhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 027592 144 GNSSCEPACEPELKETFD----FFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 144 ~~~~~~~~~~~~l~~~f~----~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~ 218 (221)
. ......-+..+|. .+-.-.+|.+++++|..++..+. ..-+..-++-.|+-+|.+++|.|+..|..-+..
T Consensus 305 d----~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e-~k~t~~SleYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 305 D----HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE-DKDTPASLEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred c----cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc-cCCCccchhhheeeeeccCCCcccHHHHHHHHH
Confidence 3 1233455667787 45556789999999999999998 888888999999999999999999999876654
No 87
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.97 E-value=3.3e-05 Score=45.43 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=38.6
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 171 ITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 171 I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
++..|++.+|+.++ ..+++.-+..+|...|.+++|.|..+||..+++.
T Consensus 2 msf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 67889999999999 9999999999999999999999999999998864
No 88
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.96 E-value=1.2e-05 Score=40.43 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHH
Q 027592 82 LVQACKLLDRDNDGVVLRSELEAL 105 (221)
Q Consensus 82 l~~~F~~~D~d~~G~i~~~el~~~ 105 (221)
|+.+|..+|.|+||.|+.+||..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456777777777777777777765
No 89
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.93 E-value=4e-05 Score=64.45 Aligned_cols=63 Identities=21% Similarity=0.339 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhC---CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 027592 81 ELVQACKLLDRDNDGVVLRSELEALLIRLG---ADPPTQEEVKSMLSEVDREGDGYIPLEALISRV 143 (221)
Q Consensus 81 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~g---~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~ 143 (221)
.|.-+|+.+|.|++|.|+.+||+.+..-++ ..+.++.++..+.+.+|-|+||.|++.||+..+
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHH
Confidence 345556666666666666666665554442 112555556666666666666666666665555
No 90
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.88 E-value=4.5e-06 Score=58.50 Aligned_cols=62 Identities=29% Similarity=0.379 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 027592 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALIS 141 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~ 141 (221)
.....+.-.|..+|.|+||.|+..|+..+...+ . +.+.=+..+++.+|.|+||.|++.|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~-~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--M-PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--S-TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--h-hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 445667777888888888888888887776544 2 4455567778888888888888888764
No 91
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.85 E-value=4.2e-05 Score=65.13 Aligned_cols=124 Identities=14% Similarity=0.093 Sum_probs=66.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC-----CCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHH
Q 027592 82 LVQACKLLDRDNDGVVLRSELEALLIRLGADP-----PTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPEL 156 (221)
Q Consensus 82 l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~-----~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l 156 (221)
...+|..||+.++|.++.+++..++....... ...+-|...| ..+....++|.+|.+++. ....+..
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~~ny~~f~Q~lh-----~~~~E~~ 181 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRHLNYAEFTQFLH-----EFQLEHA 181 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHhccHHHHHHHHH-----HHHHHHH
Confidence 34456666666666666666666655442210 1222233322 222333466666666652 2334446
Q ss_pred HHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhc-CCCCcceeHHHHH
Q 027592 157 KETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVD-KNGDGFVCFEDFS 214 (221)
Q Consensus 157 ~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d-~~~~g~i~~~eF~ 214 (221)
.++|+..|..++|.|+.=+|+.++-... ..+....++..+-... .+...++++..|.
T Consensus 182 ~qafr~~d~~~ng~is~Ldfq~imvt~~-~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 182 EQAFREKDKAKNGFISVLDFQDIMVTIR-IHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHHHHhcccCCCeeeeechHhhhhhhh-hhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 6778888888888888888888877766 5555555555544432 2223345554443
No 92
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.81 E-value=9e-05 Score=43.60 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 027592 97 VLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRV 143 (221)
Q Consensus 97 i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~ 143 (221)
++..|+..+|+.++.. +.+..+..+|+.+|.+++|.+..+||..++
T Consensus 2 msf~Evk~lLk~~NI~-~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIE-MDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCHHHHHHHHHHHccC-cCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 5778888999988888 888889999999999889999998888877
No 93
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.78 E-value=1.1e-05 Score=56.52 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=42.8
Q ss_pred CCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHH
Q 027592 150 PACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 216 (221)
Q Consensus 150 ~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~ 216 (221)
......+...|..+|.|+||+|+..|+..+...+. -.+.-+..+++..|.|+||.|++.|+..+
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 35566677788888888888888888887765442 34445778888888888888888888753
No 94
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.65 E-value=0.00038 Score=60.84 Aligned_cols=149 Identities=20% Similarity=0.248 Sum_probs=98.6
Q ss_pred cccccccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCC-----CCCcccHHHHHH
Q 027592 67 WSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDRE-----GDGYIPLEALIS 141 (221)
Q Consensus 67 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~-----~~g~I~~~ef~~ 141 (221)
+....+.|.+..+..+..+|...|.|+||.++-.|+..+-..-...|+...++..+-...+.. .++.++..-|+.
T Consensus 182 yda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLf 261 (625)
T KOG1707|consen 182 YDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLF 261 (625)
T ss_pred cccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHH
Confidence 444556677789999999999999999999999999988777655557777766655544322 123345555544
Q ss_pred HHcCCCC-----------------------------------------CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHH
Q 027592 142 RVGNSSC-----------------------------------------EPACEPELKETFDFFDADHDGKITAEELFGVF 180 (221)
Q Consensus 142 ~~~~~~~-----------------------------------------~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l 180 (221)
+....+. ...-.+.+..+|..||.|+||-+..+||..++
T Consensus 262 L~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF 341 (625)
T KOG1707|consen 262 LNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLF 341 (625)
T ss_pred HHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHh
Confidence 3221000 11224457778999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 027592 181 TKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~ 218 (221)
...+..+....-.... --.+..|.|+|..|+..+.
T Consensus 342 ~~~P~~pW~~~~~~~~---t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 342 STAPGSPWTSSPYKDS---TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred hhCCCCCCCCCccccc---ceecccceeehhhHHHHHH
Confidence 9876333221110000 0123678899998887654
No 95
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.64 E-value=0.00019 Score=47.32 Aligned_cols=64 Identities=22% Similarity=0.346 Sum_probs=53.6
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCC-CCCHHHHHHHHHhhcCC----CCcceeHHHHHHHHHh
Q 027592 155 ELKETFDFFDADHDGKITAEELFGVFTKLGDE-LCTLDDCRGMIALVDKN----GDGFVCFEDFSRMMEL 219 (221)
Q Consensus 155 ~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~-~~~~~~~~~i~~~~d~~----~~g~i~~~eF~~~l~~ 219 (221)
++..+|..+.. +.+.||.++|..+|....+. .++.+.+..++..+..+ ..+.+++++|..+|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 46789999965 89999999999999877644 57899999999998654 4789999999999964
No 96
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.57 E-value=0.00015 Score=58.71 Aligned_cols=105 Identities=16% Similarity=0.051 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHH
Q 027592 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELK 157 (221)
Q Consensus 78 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~ 157 (221)
.-..+...|..||.+++|.++..|-...+.-+.-++.+...|+..|+.|+...||.++-.+|-.++... ..-..-.+-
T Consensus 257 vsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~--lgv~~l~v~ 334 (412)
T KOG4666|consen 257 VSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV--LGVEVLRVP 334 (412)
T ss_pred hhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh--cCcceeecc
Confidence 346688999999999999999999888887665555888999999999999999999998887777422 222233456
Q ss_pred HHHhhhcCCCCCCcCHHHHHHHHHHhC
Q 027592 158 ETFDFFDADHDGKITAEELFGVFTKLG 184 (221)
Q Consensus 158 ~~f~~~D~d~dG~I~~~e~~~~l~~~~ 184 (221)
..|...+...+|+|+..+|+.++...+
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHHhCc
Confidence 789999999999999999999998755
No 97
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.00035 Score=48.16 Aligned_cols=59 Identities=24% Similarity=0.378 Sum_probs=45.7
Q ss_pred HHHhhhcCCCCCCcCHHHHHHHHHHhCC---------CCCCHHHHHH----HHHhhcCCCCcceeHHHHHHH
Q 027592 158 ETFDFFDADHDGKITAEELFGVFTKLGD---------ELCTLDDCRG----MIALVDKNGDGFVCFEDFSRM 216 (221)
Q Consensus 158 ~~f~~~D~d~dG~I~~~e~~~~l~~~~~---------~~~~~~~~~~----i~~~~d~~~~g~i~~~eF~~~ 216 (221)
..|.+.|.|++|.|+.-|+...+..... .-.++.++.. +++.-|.|+||.|+|-||+..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4689999999999999999999986531 2245555554 455558899999999999864
No 98
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.52 E-value=0.00026 Score=67.43 Aligned_cols=67 Identities=24% Similarity=0.476 Sum_probs=58.6
Q ss_pred hHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCC--CHH-----HHHHHHHhhcCCCCcceeHHHHHHHHHhC
Q 027592 153 EPELKETFDFFDADHDGKITAEELFGVFTKLGDELC--TLD-----DCRGMIALVDKNGDGFVCFEDFSRMMELQ 220 (221)
Q Consensus 153 ~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~--~~~-----~~~~i~~~~d~~~~g~i~~~eF~~~l~~~ 220 (221)
..++..+|++||.+.+|.++.++|+..|+.+| +.+ -++ ++.+++..+|++.+|.|+..+|+.||...
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslg-Y~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLG-YDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcC-CCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 34566789999999999999999999999998 554 333 79999999999999999999999999754
No 99
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.00082 Score=46.35 Aligned_cols=73 Identities=19% Similarity=0.310 Sum_probs=52.9
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh------CC--CC-CCHHHHHHHHH----hhcCCCCCcc
Q 027592 68 SDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRL------GA--DP-PTQEEVKSMLS----EVDREGDGYI 134 (221)
Q Consensus 68 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~------g~--~~-~~~~~~~~l~~----~~d~~~~g~I 134 (221)
.+....||+++.+ .-.|+..|.|+|+.|+.-|+..++... |. .| .++.++.+++. .-|.|+||.|
T Consensus 57 i~~~a~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~I 134 (144)
T KOG4065|consen 57 IEKVAKMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVI 134 (144)
T ss_pred cchhhhCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCcee
Confidence 4446778888763 456899999999999999999998765 22 22 34455555544 4477888999
Q ss_pred cHHHHHHH
Q 027592 135 PLEALISR 142 (221)
Q Consensus 135 ~~~ef~~~ 142 (221)
+|-||+..
T Consensus 135 DYgEflK~ 142 (144)
T KOG4065|consen 135 DYGEFLKR 142 (144)
T ss_pred eHHHHHhh
Confidence 99998764
No 100
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.00051 Score=58.71 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=64.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcC
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGN 145 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~ 145 (221)
.+|.++++.+...|+.+..|.+|.|+..--++++.+-. +...++..||+..|.+.||.+++.|||..|..
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk---lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK---LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc---CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 56889999999999999999999999999999998754 66899999999999999999999999999854
No 101
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.29 E-value=0.0032 Score=46.88 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=85.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcC---CCCCcccHHHHHHHHcCCCC---------
Q 027592 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDR---EGDGYIPLEALISRVGNSSC--------- 148 (221)
Q Consensus 81 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~---~~~g~I~~~ef~~~~~~~~~--------- 148 (221)
.|++....||.|+||.|..-|-.+.++++|++ +.-..+..++=...- ...+.+.=--| .+....+.
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~-~~~s~~aa~~I~~~lSy~T~~~w~p~P~f-~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFG-ILLSLLAAFIIHGALSYPTQPSWIPDPFF-RIYIKNIHKGKHGSDSG 85 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCC-HHHHHHHHHHHHcccCCccCCCCCCCCce-eEEeecccccccCCCcc
Confidence 47788889999999999999999999999998 444433332211110 11121111111 11111111
Q ss_pred -----CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCC------CCCCHHHHHHHHHhhcCCCCcceeHHHHHHH
Q 027592 149 -----EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGD------ELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 216 (221)
Q Consensus 149 -----~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~------~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~ 216 (221)
.....+.+..+|..++..+.+.||..|+.+++..... -..+.-|...++..+ .+.+|.|..+.-..+
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 3345678999999999999999999999999987431 122233444455554 778899988876544
No 102
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0013 Score=59.08 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=60.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
++.+.......++|+.+|+...|+|+...-+.+|-.-+ ++...+..+|..-|.|+||.++-+||+-.+.
T Consensus 188 AVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~---Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 188 AVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG---LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred cccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC---CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 34455677899999999999999999999999986555 6688999999999999999999999987764
No 103
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.26 E-value=0.001 Score=57.29 Aligned_cols=65 Identities=31% Similarity=0.428 Sum_probs=53.6
Q ss_pred hHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCC--CCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 027592 153 EPELKETFDFFDADHDGKITAEELFGVFTKLGD--ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 153 ~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~--~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~ 218 (221)
...+...|...| |++|+|+..|+..++...+. -....+++++++...+.|.+|.|+|++|+..+.
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 345677899999 99999999999999988751 224578899999999999999999999998654
No 104
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.08 E-value=0.00077 Score=33.87 Aligned_cols=25 Identities=48% Similarity=0.757 Sum_probs=12.1
Q ss_pred HHHHhhhcCCCCCCcCHHHHHHHHH
Q 027592 157 KETFDFFDADHDGKITAEELFGVFT 181 (221)
Q Consensus 157 ~~~f~~~D~d~dG~I~~~e~~~~l~ 181 (221)
+.+|..+|.+++|.|+..||..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3444555555555555555544443
No 105
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.06 E-value=0.00086 Score=33.69 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHH
Q 027592 82 LVQACKLLDRDNDGVVLRSELEALLIR 108 (221)
Q Consensus 82 l~~~F~~~D~d~~G~i~~~el~~~l~~ 108 (221)
+..+|..+|.+++|.|+..||..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567788888888888888888877754
No 106
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.0019 Score=60.31 Aligned_cols=140 Identities=17% Similarity=0.277 Sum_probs=114.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCC-----
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSS----- 147 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~----- 147 (221)
.++..+...+..+|..+... +|.++....+.+|..-. +....+.++|...|.+.+|.+++.||...+....
T Consensus 122 ~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~---Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~ 197 (847)
T KOG0998|consen 122 AITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK---LPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNG 197 (847)
T ss_pred CCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC---CChhhhccccccccccccCCCChhhhhhhhhHHHHHhhc
Confidence 35667888899999999875 89999999988886544 6688889999999999999999999977654300
Q ss_pred -------------------------------------------------------------------------------C
Q 027592 148 -------------------------------------------------------------------------------C 148 (221)
Q Consensus 148 -------------------------------------------------------------------------------~ 148 (221)
.
T Consensus 198 ~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~v 277 (847)
T KOG0998|consen 198 NSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKV 277 (847)
T ss_pred ccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCccc
Confidence 0
Q ss_pred CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 149 EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 149 ~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
.......+..+|...|.+.+|.|+..+.+.++...| ++...+..++...|..+.|.|++++|+-.+..
T Consensus 278 sp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g---l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 278 SPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG---LSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred ChHHHHHHHHHHHhccccCCCcccccccccccccCC---CChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 011233455689999999999999999999999866 99999999999999999999999999877654
No 107
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.87 E-value=0.01 Score=54.70 Aligned_cols=142 Identities=19% Similarity=0.096 Sum_probs=98.4
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCH-H----HHHHHHHhhcCCCCCcccHHHHHHHHcC
Q 027592 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQ-E----EVKSMLSEVDREGDGYIPLEALISRVGN 145 (221)
Q Consensus 71 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~-~----~~~~l~~~~d~~~~g~I~~~ef~~~~~~ 145 (221)
....++....+|+..|+.++....|.++.++|..+|-.+|.+ .-. + ++..+.+..|.+..|.++|.+|...|..
T Consensus 738 sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~-~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 738 SKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYN-TEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred ccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcc-cchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 334566889999999999999999999999999999999987 443 2 3334444445556689999999999975
Q ss_pred CCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHh-hcCCCCcceeHHHHHHHHH
Q 027592 146 SSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIAL-VDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 146 ~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~-~d~~~~g~i~~~eF~~~l~ 218 (221)
..........+...|+.+-.+.. +|..+|+..-...+ .-+-.+.++... .+.---+.|+|..|...+.
T Consensus 817 ~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~~~d~l----v~d~~~~e~~~~~~~~~~~r~Ld~~~~s~~~~ 885 (890)
T KOG0035|consen 817 EYEDLDTELRAILAFEDWAKTKA-YLLLEELVRERDEL----VRDLDIQEMAAYDEDERLPRGLDQVKFSSSLY 885 (890)
T ss_pred hhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHhhccHh----hHHHHHHhhcccccCCcccccchHHHHHHHhh
Confidence 55577777888889988877655 89999988822111 111123333221 1222344588888876544
No 108
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.84 E-value=0.0046 Score=40.63 Aligned_cols=63 Identities=14% Similarity=0.243 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-CCCHHHHHHHHHhhcCC----CCCcccHHHHHHHHc
Q 027592 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGAD-PPTQEEVKSMLSEVDRE----GDGYIPLEALISRVG 144 (221)
Q Consensus 81 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~-~~~~~~~~~l~~~~d~~----~~g~I~~~ef~~~~~ 144 (221)
+|..+|..+-. +.+.|+.++|..+|+.-.-. ..+..++..++..|..+ ..+.++++.|..+|.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 47788999965 78899999999999765332 26788999999988554 468899999999885
No 109
>PLN02952 phosphoinositide phospholipase C
Probab=96.59 E-value=0.023 Score=50.88 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=63.5
Q ss_pred CCCcccHHHHHHHHcCCC-CCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCC-CCCHHHHHHHHHhhc------
Q 027592 130 GDGYIPLEALISRVGNSS-CEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDE-LCTLDDCRGMIALVD------ 201 (221)
Q Consensus 130 ~~g~I~~~ef~~~~~~~~-~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~-~~~~~~~~~i~~~~d------ 201 (221)
..|.++|++|..+..... .......++..+|..+-. +.+.|+.++|..+|....+. ..+.+.+..|+..+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 357899999987764322 234467899999998865 44789999999999987643 366677777765441
Q ss_pred -CCCCcceeHHHHHHHHHh
Q 027592 202 -KNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 202 -~~~~g~i~~~eF~~~l~~ 219 (221)
..+.+.++++.|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 112345999999999864
No 110
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.011 Score=50.91 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=58.7
Q ss_pred CCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 150 PACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 150 ~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
....++...-|+.+-.|-.|+|+..--+.++.. ..+..+|+..||.+-|.|.||-|++.|||..|..
T Consensus 227 ~EQReYYvnQFrtvQpDp~gfisGsaAknFFtK---Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPHGFISGSAAKNFFTK---SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHHHhhhhcccCCcccccccHHHHhhhhh---ccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 344566778899999999999999999999887 5599999999999999999999999999998864
No 111
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.12 E-value=0.015 Score=47.79 Aligned_cols=97 Identities=21% Similarity=0.168 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhC--CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHH
Q 027592 80 YELVQACKLLDRDNDGVVLRSELEALLIRLG--ADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELK 157 (221)
Q Consensus 80 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~ 157 (221)
.+|+..|..+=.+.++......+...-..+. +.|.-+..+.-||+.+|.|.|+.++..|+..+.. ..++.-++
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l-----dknE~Cik 285 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL-----DKNEACIK 285 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhc-----cCchhHHH
Confidence 3444555554444444444433333322221 1123344555555555555555555555554442 33444455
Q ss_pred HHHhhhcCCCCCCcCHHHHHHHHH
Q 027592 158 ETFDFFDADHDGKITAEELFGVFT 181 (221)
Q Consensus 158 ~~f~~~D~d~dG~I~~~e~~~~l~ 181 (221)
..|+..|...||.|+-.|.=..+.
T Consensus 286 pFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 286 PFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred HHHhhhcccccCccccchhhhhhc
Confidence 555555555555555555544443
No 112
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.91 E-value=0.049 Score=49.35 Aligned_cols=100 Identities=16% Similarity=0.284 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHH
Q 027592 114 PTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDC 193 (221)
Q Consensus 114 ~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~ 193 (221)
.....+..+|...|.+++|.+++.+-..++. ..........++..|+..|..++|.+..+++..+...+. ... ++
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~-~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~---~rp-ev 207 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLK-QLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT---KRP-EV 207 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHH-HHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc---cCc-hH
Confidence 4456788999999999999999999988874 222445566778888888999999999999999998876 333 78
Q ss_pred HHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 194 RGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 194 ~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
..+|..+ .++.+.++.+++..++..
T Consensus 208 ~~~f~~~-s~~~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 208 YFLFVQY-SHGKEYLSTDDLLRFLEE 232 (746)
T ss_pred HHHHHHH-hCCCCccCHHHHHHHHHH
Confidence 8888877 444777888888877754
No 113
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.83 E-value=0.02 Score=47.12 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=39.2
Q ss_pred CCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 027592 150 PACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 150 ~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~ 218 (221)
+.....+-++|..+|.+.||.|+..|++.+-..- ++.-|..+|+..|...||.|+-.|++.++.
T Consensus 246 p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk-----nE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 246 PICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK-----NEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred cchhhhhhhhhhccccccccccCHHHhhhhhccC-----chhHHHHHHhhhcccccCccccchhhhhhc
Confidence 3455566666666666666666666666655432 244566666666666666666666665554
No 114
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.74 E-value=0.064 Score=40.08 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhhcCCCCcceeHHHHHHHHHhCC
Q 027592 188 CTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQR 221 (221)
Q Consensus 188 ~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~~~ 221 (221)
+.++.+++||..++..+.+.|++.|...+++.+|
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 5666789999999988888899999999998765
No 115
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.65 E-value=0.03 Score=49.14 Aligned_cols=73 Identities=12% Similarity=0.199 Sum_probs=67.1
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 71 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
.-.+++++....+..|..+|.|+.|++...+..+.|...+.+ .++..+.++++..|.+-.|.+...||..++.
T Consensus 584 ~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~-~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 584 PIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVG-WDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred ccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 345678999999999999999999999999999999999978 9999999999999998899999999999885
No 116
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.86 E-value=0.18 Score=37.33 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=46.1
Q ss_pred HHHHhhh---cCCCCCCcCHHHHHHHHHHhCC--CCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 157 KETFDFF---DADHDGKITAEELFGVFTKLGD--ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 157 ~~~f~~~---D~d~dG~I~~~e~~~~l~~~~~--~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
+.+|..| -..+...|+...|..+|+..+- ..++...++.+|..+-..+...|+|++|+.+|..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 4455554 3556778999999999997642 4589999999999985566667999999998864
No 117
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=0.033 Score=52.24 Aligned_cols=132 Identities=18% Similarity=0.264 Sum_probs=105.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCC------------
Q 027592 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSC------------ 148 (221)
Q Consensus 81 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~------------ 148 (221)
.+...|+.+|..++|.|+..+...++..-| +....+..+|...|..+.|..+..+|...+.....
T Consensus 12 ~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~---L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 12 LFDQYFKSADPQGDGRITGAEAVAFLSKSG---LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred hHHHhhhccCcccCCcccHHHhhhhhhccc---cchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 467889999999999999999999998766 66889999999999999899999999776654000
Q ss_pred ----------------------C-------------CCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHH
Q 027592 149 ----------------------E-------------PACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDC 193 (221)
Q Consensus 149 ----------------------~-------------~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~ 193 (221)
. .........+|.-+... .|.++.+..+-+|.. ..++-..+
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~---s~Lp~~~l 164 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLN---SKLPSDVL 164 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhc---CCCChhhh
Confidence 0 00112344567777774 899999988888877 44888999
Q ss_pred HHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 194 RGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 194 ~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
..++...|.|.+|.++..||.-.|..
T Consensus 165 ~~iw~l~d~d~~g~Ld~~ef~~am~l 190 (847)
T KOG0998|consen 165 GRIWELSDIDKDGNLDRDEFAVAMHL 190 (847)
T ss_pred ccccccccccccCCCChhhhhhhhhH
Confidence 99999999999999999999987764
No 118
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.66 E-value=0.035 Score=49.34 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=44.3
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHH
Q 027592 115 TQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEEL 176 (221)
Q Consensus 115 ~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~ 176 (221)
+..-+.++|...|.+.+|.++|.+|+..+. ........+.+..+|+++|.+++ .++.+|.
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~-~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLS-ILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHH-HHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 334567778888888888888888888775 44466667777778888888888 7777776
No 119
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.61 E-value=0.037 Score=34.99 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=40.7
Q ss_pred CChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCC-------CCcceeHHHHHHH
Q 027592 151 ACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKN-------GDGFVCFEDFSRM 216 (221)
Q Consensus 151 ~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~-------~~g~i~~~eF~~~ 216 (221)
...+.+..+|+.+ .++.++||.+||++.|..-. ++-++..+..- .-|.++|..|+.-
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe~--------aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLTPEQ--------AEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-CCC--------HHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcCcHH--------HHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 4568899999999 88999999999999876433 45555544321 2267999988753
No 120
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.54 E-value=0.012 Score=48.06 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcC
Q 027592 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGN 145 (221)
Q Consensus 78 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~ 145 (221)
+...+...|..+|.|.++.|...|+.-+-+-+--......=..++++.+|.|+|..|+++|++.++..
T Consensus 331 eeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 331 EERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred hhheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 34456677788888888888877765544333211133444567777778888888888888777753
No 121
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.22 E-value=0.54 Score=31.38 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=42.3
Q ss_pred hHHHHHHHhhhcCCCCCCcCHHHHHHHHHHh-------CC---CCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHhCC
Q 027592 153 EPELKETFDFFDADHDGKITAEELFGVFTKL-------GD---ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQR 221 (221)
Q Consensus 153 ~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~-------~~---~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~~~ 221 (221)
.++++.+|..+ .|.+|.++...|..+|..+ |+ .+-.+..+...|... .....|+.++|+.+|...|
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCC
Confidence 35778888888 6788999999988888753 21 223666778888875 3556799999999997643
No 122
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.84 E-value=0.13 Score=45.39 Aligned_cols=64 Identities=23% Similarity=0.336 Sum_probs=58.5
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 155 ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 155 ~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
..+..|..+|.|+.|+++.++..++|+..+ ..++++.+.++++.+|.+-+|.+...||.+++..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~-~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSEN-VGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 445678999999999999999999999998 8999999999999999999999999999988753
No 123
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.65 E-value=0.13 Score=41.85 Aligned_cols=59 Identities=31% Similarity=0.408 Sum_probs=43.5
Q ss_pred HHhhhcCCCCCCcCHHHHHHHHHHh----CCCCCCH-HH-----------HHHHHHhhcCCCCcceeHHHHHHHHH
Q 027592 159 TFDFFDADHDGKITAEELFGVFTKL----GDELCTL-DD-----------CRGMIALVDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 159 ~f~~~D~d~dG~I~~~e~~~~l~~~----~~~~~~~-~~-----------~~~i~~~~d~~~~g~i~~~eF~~~l~ 218 (221)
.|.++|.|+||+++..|+..++..- . .+-++ ++ -..++..+|.|.|.-|+++||+..-.
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvY-dpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVY-DPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 5678899999999999999988742 2 11111 11 12367788999999999999987543
No 124
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.40 E-value=0.063 Score=44.01 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=51.3
Q ss_pred HHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 155 ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 155 ~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
.+...|..+|.|.++.|...|++-+=.-+-+..-...-...+++..|.|+|.+|+++|+..+|..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 46678999999999999999976654443323344556788999999999999999999988753
No 125
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.32 E-value=2.4 Score=39.73 Aligned_cols=123 Identities=15% Similarity=0.217 Sum_probs=88.7
Q ss_pred hCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcC--CCCC-----cccHHHHHHHHcCCCCCCCChHHHHHHHh
Q 027592 89 LDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDR--EGDG-----YIPLEALISRVGNSSCEPACEPELKETFD 161 (221)
Q Consensus 89 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~--~~~g-----~I~~~ef~~~~~~~~~~~~~~~~l~~~f~ 161 (221)
+..|..|.|....+.+.+.+ + ..+..+...+..+.- +... ..+|+.|..++. ..-...++..+|.
T Consensus 157 mqvn~~grip~knI~k~F~~---~-k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~----klcpR~eie~iF~ 228 (1189)
T KOG1265|consen 157 MQVNFEGRIPVKNIIKTFSA---D-KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLN----KLCPRPEIEEIFR 228 (1189)
T ss_pred hcccccccccHHHHHHHhhc---C-CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHH----hcCCchhHHHHHH
Confidence 34567899998888887743 2 334566666655532 2222 345566666653 2244568899999
Q ss_pred hhcCCCCCCcCHHHHHHHHHHhCC---------CCCCHHHHHHHHHhhcCC----CCcceeHHHHHHHHHh
Q 027592 162 FFDADHDGKITAEELFGVFTKLGD---------ELCTLDDCRGMIALVDKN----GDGFVCFEDFSRMMEL 219 (221)
Q Consensus 162 ~~D~d~dG~I~~~e~~~~l~~~~~---------~~~~~~~~~~i~~~~d~~----~~g~i~~~eF~~~l~~ 219 (221)
.+..++.-++|.++|..+|..-.. ..+....+..|+..|..| ..|+++-+.|++++..
T Consensus 229 ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 229 KISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred HhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 999999999999999999986432 557788899999999766 4789999999999865
No 126
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.79 E-value=0.18 Score=45.05 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=58.1
Q ss_pred ccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHH
Q 027592 134 IPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFED 212 (221)
Q Consensus 134 I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~e 212 (221)
|+|+.|...+.....-.....-+..+|+.+|.+++|.|+..+|...|..+. ....-+-+.-++..+|.+++ ..+.+|
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-cccccc
Confidence 566666666643333234455677899999999999999999999999887 55666678888999998887 666554
No 127
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=92.62 E-value=0.76 Score=33.99 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=46.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCC---CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 82 LVQACKLLDRDNDGVVLRSELEALLIRLGA---DPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 82 l~~~F~~~D~d~~G~i~~~el~~~l~~~g~---~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
+...|..|...+...++...|.++++..++ . ++...+.-+|..+-..+...|+|++|+.+|.
T Consensus 4 ~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k-~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 4 VFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKK-LTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SS-S-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred HHHHHHHhcCCccccccHHHHHHHHHHcCCCCCC-CchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 344444445556779999999999998865 3 7888999999998766677899999999984
No 128
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=92.33 E-value=0.24 Score=48.02 Aligned_cols=58 Identities=17% Similarity=0.337 Sum_probs=50.3
Q ss_pred HHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 027592 159 TFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 159 ~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~ 218 (221)
.|+.||+||.|.|+..+|...+..- ...+..+++-++.-+..|.+..++|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~--k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH--KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc--ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 4778899999999999999998742 567888999999999999999999999997653
No 129
>PLN02952 phosphoinositide phospholipase C
Probab=92.11 E-value=1.7 Score=39.23 Aligned_cols=89 Identities=9% Similarity=0.086 Sum_probs=61.8
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCC-CChHHHHHHHhhh-------
Q 027592 93 NDGVVLRSELEALLIRLGAD-PPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEP-ACEPELKETFDFF------- 163 (221)
Q Consensus 93 ~~G~i~~~el~~~l~~~g~~-~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~-~~~~~l~~~f~~~------- 163 (221)
+.|.++..+|..+.+.+-.. .....++..+|..|-.+ .+.|+.++|..++...+... ...+.+..++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 46899999998888776421 13568999999999544 36799999999997655533 4455555555432
Q ss_pred cCCCCCCcCHHHHHHHHHH
Q 027592 164 DADHDGKITAEELFGVFTK 182 (221)
Q Consensus 164 D~d~dG~I~~~e~~~~l~~ 182 (221)
...+.+.++.+.|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 1123456899999999863
No 130
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=91.76 E-value=0.53 Score=43.97 Aligned_cols=67 Identities=19% Similarity=0.127 Sum_probs=52.1
Q ss_pred ChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCH--HHHHHHH---HhhcCCCCcceeHHHHHHHHHh
Q 027592 152 CEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTL--DDCRGMI---ALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 152 ~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~--~~~~~i~---~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
...+++..|+.+|....|.++.++|...|..+| ...-. ..+.++| ...|.+.-|+|+|.+|...|.+
T Consensus 745 v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg-~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 745 VLDELRALENEQDKIDGGAASPEELLRCLMSLG-YNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcC-cccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 456788899999999999999999999999999 55553 2234444 4445556689999999998865
No 131
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=91.59 E-value=0.38 Score=46.80 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=49.6
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcC
Q 027592 86 CKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGN 145 (221)
Q Consensus 86 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~ 145 (221)
|+.+|+||.|.|+..+|.+++. |....+..++..++.-...+.+..++|++|+.-+..
T Consensus 4063 fkeydpdgkgiiskkdf~kame--~~k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAME--GHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHh--ccccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 5678999999999999999997 343377889999998888888999999999988843
No 132
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=91.40 E-value=0.46 Score=38.82 Aligned_cols=93 Identities=25% Similarity=0.375 Sum_probs=50.0
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHh---CCCCCCH-HH-----------HHHHHHhhcCCCCCcccHHHHHHHHcCCCC
Q 027592 84 QACKLLDRDNDGVVLRSELEALLIRL---GADPPTQ-EE-----------VKSMLSEVDREGDGYIPLEALISRVGNSSC 148 (221)
Q Consensus 84 ~~F~~~D~d~~G~i~~~el~~~l~~~---g~~~~~~-~~-----------~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~ 148 (221)
-.|...|.|+||+++..||..++..- -++|... .+ -..+++.+|+|.|..|+.+||+..-.+...
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef 327 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEF 327 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhccc
Confidence 35677788888888888887766532 1111111 11 134566677777777777777766532221
Q ss_pred CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHh
Q 027592 149 EPACEPELKETFDFFDADHDGKITAEELFGVFTKL 183 (221)
Q Consensus 149 ~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~ 183 (221)
.. ..+. |..++ ....-|.+|++++=..+
T Consensus 328 ~~-p~e~----WEtl~--q~~~yTeEEL~~fE~e~ 355 (442)
T KOG3866|consen 328 NP-PKEE----WETLG--QKKVYTEEELQQFEREY 355 (442)
T ss_pred CC-cchh----hhhhc--ccccccHHHHHHHHHHH
Confidence 11 1122 22222 33455666666655443
No 133
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.30 E-value=0.33 Score=43.06 Aligned_cols=70 Identities=26% Similarity=0.355 Sum_probs=51.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 72 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
..|+..-++-+..+|.+||.|+||.++..||..++...+-.|......... --.+..|.+++.-|+..|.
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~---t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS---TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred eeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc---ceecccceeehhhHHHHHH
Confidence 346668899999999999999999999999999998875542111000000 0113679999999999885
No 134
>PLN02222 phosphoinositide phospholipase C 2
Probab=89.02 E-value=2.1 Score=38.59 Aligned_cols=67 Identities=15% Similarity=0.266 Sum_probs=45.9
Q ss_pred CChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCC-CCCHHHHHHHHHhhcC-CCCcceeHHHHHHHHHh
Q 027592 151 ACEPELKETFDFFDADHDGKITAEELFGVFTKLGDE-LCTLDDCRGMIALVDK-NGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 151 ~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~-~~~~~~~~~i~~~~d~-~~~g~i~~~eF~~~l~~ 219 (221)
....++..+|..+-. ++.++.++|..+|....+. ..+.+.+..||..+.. ...+.++++.|..+|..
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 355678888877753 4688888888888877543 3566777777776532 23556888888888753
No 135
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=89.01 E-value=4.2 Score=27.13 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHh-----------CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 80 YELVQACKLLDRDNDGVVLRSELEALLIRL-----------GADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 80 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-----------g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
+.++-+|..+ .|++|.++...|..+|+.+ .+. ..+..++..|... .....|+.++|+..+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg-~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFG-YIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT---HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCcccccc-CcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 4678889988 5789999999999988865 122 3566777777765 2345688888888874
No 136
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=88.47 E-value=0.47 Score=29.99 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcC----CCCCcccHHHHHHH
Q 027592 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDR----EGDGYIPLEALISR 142 (221)
Q Consensus 80 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~----~~~g~I~~~ef~~~ 142 (221)
+++.+.|+.+ .++.++|+..||++.|.. -..+.|..-+..+.. ...|..+|..|+..
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-----e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTP-----EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-C-----CCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCc-----HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 4688999999 667899999999998631 222333333333321 12367888888753
No 137
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=88.10 E-value=2.5 Score=28.58 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCC---CCCcccHHHHHHHH
Q 027592 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDRE---GDGYIPLEALISRV 143 (221)
Q Consensus 78 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~---~~g~I~~~ef~~~~ 143 (221)
....+...|..+-. ||.|+..+|..++ |.. -+++-...+|..+-.. ....|+.+|+..++
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~-dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW 90 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---GMK-DSKEFAGELFDALARRRGIKGDSITKDELKEFW 90 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T---S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---CCc-ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHH
Confidence 46778888888876 7889998888888 665 6677777777665321 13457777777666
No 138
>PLN02228 Phosphoinositide phospholipase C
Probab=88.10 E-value=3.1 Score=37.37 Aligned_cols=69 Identities=20% Similarity=0.356 Sum_probs=46.4
Q ss_pred CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCC-CCHHHHHHHHHhhcCC----CCcceeHHHHHHHHHh
Q 027592 149 EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDEL-CTLDDCRGMIALVDKN----GDGFVCFEDFSRMMEL 219 (221)
Q Consensus 149 ~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~-~~~~~~~~i~~~~d~~----~~g~i~~~eF~~~l~~ 219 (221)
......++..+|..+-. ++.|+.++|..+|....+.. .+.+.+..++..+... ..|.++++.|..+|..
T Consensus 19 ~~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 19 TREPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 34466778888877753 35788888888888765332 4456677777777432 2356888888888753
No 139
>PLN02230 phosphoinositide phospholipase C 4
Probab=85.96 E-value=4.6 Score=36.60 Aligned_cols=70 Identities=14% Similarity=0.289 Sum_probs=50.6
Q ss_pred CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCC-C-CCCHHHHHHHHHhhcC-------CCCcceeHHHHHHHHHh
Q 027592 149 EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGD-E-LCTLDDCRGMIALVDK-------NGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 149 ~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~-~-~~~~~~~~~i~~~~d~-------~~~g~i~~~eF~~~l~~ 219 (221)
......++..+|..|-.++ ++++.++|..+|...++ . ..+.+++..++..+-. -+.+.++++.|..+|..
T Consensus 24 ~~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 24 ESGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cCCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3446678999999995444 89999999999998762 2 3466777777765421 13456999999998864
No 140
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=84.09 E-value=6.6 Score=23.17 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 125 (221)
.++.++...|...|.. +.+.+..++..+...+| ++...|..+|..
T Consensus 6 ~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~---l~~~qV~~WF~n 50 (59)
T cd00086 6 RFTPEQLEELEKEFEK-----NPYPSREEREELAKELG---LTERQVKIWFQN 50 (59)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 4667889999999987 55999999999999888 568889888864
No 141
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=83.97 E-value=6.7 Score=23.17 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=37.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (221)
Q Consensus 72 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 125 (221)
..++.++...|...|.. +.+++..+...+...+| ++...|..+|..
T Consensus 5 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~---l~~~~V~~WF~n 50 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG---LTERQVKNWFQN 50 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT---SSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-----hcccccccccccccccc---ccccccccCHHH
Confidence 35778999999999985 56899999999999888 558888888853
No 142
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=83.64 E-value=9.8 Score=27.13 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhCCCC--CCcccHHHHHHHHHHh
Q 027592 77 DMNYELVQACKLLDRDN--DGVVLRSELEALLIRL 109 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~d~--~G~i~~~el~~~l~~~ 109 (221)
-.+..+.++|.....+. +..|+..|+..++..+
T Consensus 38 v~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~i 72 (127)
T PF09068_consen 38 VDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSI 72 (127)
T ss_dssp --HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHH
Confidence 34555667777666543 4567777777777654
No 143
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=83.04 E-value=3.9 Score=27.64 Aligned_cols=84 Identities=18% Similarity=0.075 Sum_probs=50.7
Q ss_pred CCcccHHHHHHHHHHhC--CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCc
Q 027592 94 DGVVLRSELEALLIRLG--ADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKI 171 (221)
Q Consensus 94 ~G~i~~~el~~~l~~~g--~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I 171 (221)
||.++..|...+-.-+. +. ++..+...++..+........++.+|...+...........-+..+|.+.-. ||.+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~ 89 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFG-LDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGEL 89 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCC
Confidence 67888888766654431 23 5677777777777655556688999988875222122223334445555543 5778
Q ss_pred CHHHHHHHH
Q 027592 172 TAEELFGVF 180 (221)
Q Consensus 172 ~~~e~~~~l 180 (221)
+..|-.-+.
T Consensus 90 ~~~E~~~l~ 98 (104)
T cd07313 90 DEYEEHLIR 98 (104)
T ss_pred CHHHHHHHH
Confidence 777755443
No 144
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=82.42 E-value=1.5 Score=30.58 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 114 PTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 114 ~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
+++++.+++|..+..|..|.+.|.||+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 7899999999999999999999999999985
No 145
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=82.04 E-value=5.5 Score=37.20 Aligned_cols=147 Identities=11% Similarity=0.094 Sum_probs=85.4
Q ss_pred cccCCHHHHHH-HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHH-HHHHHHHhhcCCCCCcccHHHHHHHHcCCCC
Q 027592 71 SADISLDMNYE-LVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQE-EVKSMLSEVDREGDGYIPLEALISRVGNSSC 148 (221)
Q Consensus 71 ~~~l~~~~~~~-l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~-~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~ 148 (221)
..+.++.+|+. ++..+-..|......|+..++..+|....+. ++.. .+..-|... .-..+.++|++|..+......
T Consensus 134 l~a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k-~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmf 211 (1267)
T KOG1264|consen 134 LNAPTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFK-VSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMF 211 (1267)
T ss_pred ccCCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEE-echHHHHHHHHhHh-hhccccccHHHHHHHHHHHhh
Confidence 34445555543 5666777776666789999999999877766 4433 333334333 334567999999988753332
Q ss_pred CC--CChHHHHHHH--hhhcCCCCCCcCHHHHHHHHHHhCCCCC--CHHHHHHHHHhhcCC-----CCcceeHHHHHHHH
Q 027592 149 EP--ACEPELKETF--DFFDADHDGKITAEELFGVFTKLGDELC--TLDDCRGMIALVDKN-----GDGFVCFEDFSRMM 217 (221)
Q Consensus 149 ~~--~~~~~l~~~f--~~~D~d~dG~I~~~e~~~~l~~~~~~~~--~~~~~~~i~~~~d~~-----~~g~i~~~eF~~~l 217 (221)
.. ....+....| ..=+...--.++..||.++|.....+.. ....++.+++.|-.| ..-.++++||+.+|
T Consensus 212 s~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fL 291 (1267)
T KOG1264|consen 212 SQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFL 291 (1267)
T ss_pred ccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHH
Confidence 11 1111122222 1222233357999999999986541111 111345555555222 23359999999998
Q ss_pred Hh
Q 027592 218 EL 219 (221)
Q Consensus 218 ~~ 219 (221)
-.
T Consensus 292 FS 293 (1267)
T KOG1264|consen 292 FS 293 (1267)
T ss_pred hh
Confidence 43
No 146
>PLN02223 phosphoinositide phospholipase C
Probab=79.34 E-value=9.1 Score=34.17 Aligned_cols=69 Identities=9% Similarity=-0.029 Sum_probs=49.5
Q ss_pred CCChHHHHHHHhhhcCCCCCCcCHHHHHHHH---HHhCC-CCCCHHHHHHHHHhhcCC--------CCcceeHHHHHHHH
Q 027592 150 PACEPELKETFDFFDADHDGKITAEELFGVF---TKLGD-ELCTLDDCRGMIALVDKN--------GDGFVCFEDFSRMM 217 (221)
Q Consensus 150 ~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l---~~~~~-~~~~~~~~~~i~~~~d~~--------~~g~i~~~eF~~~l 217 (221)
....+.++.+|..+- ++.|.++.+.+.++| ...++ ...+.++++.|+..+-.. ..+.++++.|..+|
T Consensus 12 ~~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 12 ANQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 346678888898884 678899999999888 44432 457777777777765322 22569999999998
Q ss_pred Hh
Q 027592 218 EL 219 (221)
Q Consensus 218 ~~ 219 (221)
..
T Consensus 91 ~s 92 (537)
T PLN02223 91 FS 92 (537)
T ss_pred cC
Confidence 64
No 147
>PLN02222 phosphoinositide phospholipase C 2
Probab=79.24 E-value=9.7 Score=34.47 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-CCCHHHHHHHHHhhcC-CCCCcccHHHHHHHHcC
Q 027592 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGAD-PPTQEEVKSMLSEVDR-EGDGYIPLEALISRVGN 145 (221)
Q Consensus 81 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~-~~~~~~~~~l~~~~d~-~~~g~I~~~ef~~~~~~ 145 (221)
+|..+|..+-. ++.++.++|..+|...... ..+.+.+..+++.+.. ...+.++++.|..+|..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 57778888753 4799999999999887432 2467788889988742 23567999999999964
No 148
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=79.01 E-value=25 Score=32.70 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=85.1
Q ss_pred HHHHHHHhCCCC-CCcccHHHHHHHHHHh--------CC---CCCC-HHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCC
Q 027592 82 LVQACKLLDRDN-DGVVLRSELEALLIRL--------GA---DPPT-QEEVKSMLSEVDREGDGYIPLEALISRVGNSSC 148 (221)
Q Consensus 82 l~~~F~~~D~d~-~G~i~~~el~~~l~~~--------g~---~~~~-~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~ 148 (221)
+.++|..++..+ +..+...+...+|... |. .|+- +--+..+++.||...+|.|..-+|...+. ..+
T Consensus 422 ~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i-~lc 500 (966)
T KOG4286|consen 422 ALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGII-SLC 500 (966)
T ss_pred HHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHH-HHh
Confidence 445566666553 4566666666655443 21 1111 22357889999999999999999988775 455
Q ss_pred CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHH-------HhCC-----CCCCHHHHHHHHHhhcCCCCcceeHHHHHHH
Q 027592 149 EPACEPELKETFDFFDADHDGKITAEELFGVFT-------KLGD-----ELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 216 (221)
Q Consensus 149 ~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~-------~~~~-----~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~ 216 (221)
.....+.++.+|...-.++...+ ...|..+|. .+|. -.--+.-+...|.. .++.-.|.+.+|+.+
T Consensus 501 k~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF~~--v~~~pei~~~~f~dw 577 (966)
T KOG4286|consen 501 KAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQF--VNNKPEIEAALFLDW 577 (966)
T ss_pred cchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHHHh--cCCCCcchHHHHHHH
Confidence 67778888999998876554443 555554444 3331 11112235666763 455557999999998
Q ss_pred HHhCC
Q 027592 217 MELQR 221 (221)
Q Consensus 217 l~~~~ 221 (221)
+...|
T Consensus 578 ~~~ep 582 (966)
T KOG4286|consen 578 MRLEP 582 (966)
T ss_pred hccCc
Confidence 87653
No 149
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=77.19 E-value=4.2 Score=27.51 Aligned_cols=51 Identities=14% Similarity=-0.093 Sum_probs=24.3
Q ss_pred CCcccHHHHHHHHcCCCC-CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHH
Q 027592 131 DGYIPLEALISRVGNSSC-EPACEPELKETFDFFDADHDGKITAEELFGVFT 181 (221)
Q Consensus 131 ~g~I~~~ef~~~~~~~~~-~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~ 181 (221)
||.|+-.|-..+-..... ......+...++..+........+..+|...+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 556666665444321111 233344445555555444455555555555554
No 150
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.80 E-value=7.2 Score=35.87 Aligned_cols=80 Identities=23% Similarity=0.373 Sum_probs=53.1
Q ss_pred CCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCC-------CCCCHHHHHHHHHhhcCC
Q 027592 131 DGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGD-------ELCTLDDCRGMIALVDKN 203 (221)
Q Consensus 131 ~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~-------~~~~~~~~~~i~~~~d~~ 203 (221)
++ |+++||. ......+..++..|..+|. ++|.++.+++..++...-. ...+.+....++...|.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 7788877 2245667778888888887 7888888888888775310 233344455667777777
Q ss_pred CCcceeHHHHHHHHH
Q 027592 204 GDGFVCFEDFSRMME 218 (221)
Q Consensus 204 ~~g~i~~~eF~~~l~ 218 (221)
..|-+.+.++.-++.
T Consensus 74 ~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 74 HKGYITNEDLEILLL 88 (646)
T ss_pred ccceeeecchhHHHH
Confidence 777776666655554
No 151
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=76.70 E-value=0.88 Score=34.83 Aligned_cols=48 Identities=27% Similarity=0.312 Sum_probs=28.2
Q ss_pred CCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHH
Q 027592 130 GDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVF 180 (221)
Q Consensus 130 ~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l 180 (221)
-||.++-.|+..+-+-.+ ....-+...|...|.|+||+|..+|....+
T Consensus 201 ~d~~~sh~el~pl~ap~i---pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccccccccccccCCcc---cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 456677777666543222 333344566677777777777777665543
No 152
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=74.33 E-value=24 Score=28.67 Aligned_cols=99 Identities=11% Similarity=0.093 Sum_probs=58.0
Q ss_pred CCCcccHHHHHHHHHHhC--CCCCCHHH---HHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHH----HHHHhhh
Q 027592 93 NDGVVLRSELEALLIRLG--ADPPTQEE---VKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPEL----KETFDFF 163 (221)
Q Consensus 93 ~~G~i~~~el~~~l~~~g--~~~~~~~~---~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l----~~~f~~~ 163 (221)
-||.++..|+. +.+.+. +. ++.++ +..+|+.- .....++.+|+..+.... ....+.+ ..+|.+.
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~-l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~--~~r~~l~~~lL~~l~~vA 140 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMN-LHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVC--GGRFDLLRMFLEIQIQAA 140 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcC-CCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHh--cccHHHHHHHHHHHHHHH
Confidence 37899999997 333331 22 44555 55555543 334488999998885322 2333333 3344444
Q ss_pred cCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 164 DADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 164 D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
= -||.|+..|-.-+........++..++..+...+
T Consensus 141 ~--ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~ 175 (267)
T PRK09430 141 F--ADGSLHPNERQVLYVIAEELGFSRFQFDQLLRMM 175 (267)
T ss_pred H--hcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 3588999885444332222448888888877664
No 153
>PLN02228 Phosphoinositide phospholipase C
Probab=74.04 E-value=15 Score=33.13 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCC----CCCcccHHHHHHHH
Q 027592 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGA-DPPTQEEVKSMLSEVDRE----GDGYIPLEALISRV 143 (221)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~-~~~~~~~~~~l~~~~d~~----~~g~I~~~ef~~~~ 143 (221)
..+|..+|..+-. ++.++.++|..+|..... ...+.+.+..++..|... ..|.++++.|..++
T Consensus 23 ~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 23 PVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred cHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 4456777777753 357999999999987633 214566788888888543 23678899988888
No 154
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=73.90 E-value=35 Score=25.55 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGAD 112 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 112 (221)
.++++-+.+|.++|..+-.+ ++-+...+|..++..|..+
T Consensus 7 ki~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~IP 45 (170)
T PF08730_consen 7 KIPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQIP 45 (170)
T ss_pred cCChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCCC
Confidence 34557788899999988653 7789999999999999765
No 155
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=73.80 E-value=5.6 Score=18.79 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=11.2
Q ss_pred CCCCCCcccHHHHHHHH
Q 027592 90 DRDNDGVVLRSELEALL 106 (221)
Q Consensus 90 D~d~~G~i~~~el~~~l 106 (221)
|.|+||.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 56778888877776543
No 156
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=73.61 E-value=6.3 Score=39.84 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=54.8
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcC
Q 027592 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLG----ADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGN 145 (221)
Q Consensus 71 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g----~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~ 145 (221)
.+.|++.+.+++.++|..+|++..|.|...++..+++.+. .. ..... +-+--.+....+|.|+|.+-+..+..
T Consensus 1408 s~~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~-k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1408 SEGLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLG-KPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cccCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccC-CCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 3367889999999999999999999999999999999873 32 12222 22223334557888999998888754
No 157
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=73.31 E-value=11 Score=25.90 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=37.2
Q ss_pred hhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHh---CCCCCCHHHHHHHHHhhc
Q 027592 125 EVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKL---GDELCTLDDCRGMIALVD 201 (221)
Q Consensus 125 ~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~---~~~~~~~~~~~~i~~~~d 201 (221)
.||+.....|+.++...++.. -.-|.+.|.--..-||..-+.+++... |...++...+..+++.++
T Consensus 11 LYDT~tS~YITLedi~~lV~~-----------g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVRE-----------GREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred ccCCCccceeeHHHHHHHHHC-----------CCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 356666666777776666621 012445555444456666666655543 214456666666666664
Q ss_pred CCC
Q 027592 202 KNG 204 (221)
Q Consensus 202 ~~~ 204 (221)
..-
T Consensus 80 ~~~ 82 (107)
T TIGR01848 80 GSM 82 (107)
T ss_pred hhH
Confidence 433
No 158
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=73.06 E-value=6.4 Score=28.52 Aligned_cols=69 Identities=14% Similarity=0.028 Sum_probs=33.6
Q ss_pred CcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcC-------CCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCC
Q 027592 95 GVVLRSELEALLIRLGADPPTQEEVKSMLSEVDR-------EGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDAD 166 (221)
Q Consensus 95 G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~-------~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d 166 (221)
+.|+..||.++-.-.. .+...+..++..|.. +..+.|+|+.|..+|..-.......+-.+.+|..|-..
T Consensus 6 ~~lsp~eF~qLq~y~e---ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE---YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp S-S-HHHHHHHHHHHH---H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred eccCHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 4566666666554432 223345555555522 23457888888888754334446666777788777543
No 159
>PLN02230 phosphoinositide phospholipase C 4
Probab=72.81 E-value=20 Score=32.57 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC--CCHHHHHHHHHhhcC-------CCCCcccHHHHHHHHcC
Q 027592 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADP--PTQEEVKSMLSEVDR-------EGDGYIPLEALISRVGN 145 (221)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--~~~~~~~~l~~~~d~-------~~~g~I~~~ef~~~~~~ 145 (221)
..++..+|..+-.+ ++.++.++|..+|......+ .+.+.+..++..+-. -+.+.++++.|..++..
T Consensus 28 ~~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 28 VADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 34688889898544 48999999999999875321 356666777765421 12346999999998853
No 160
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=72.44 E-value=28 Score=24.02 Aligned_cols=54 Identities=28% Similarity=0.380 Sum_probs=43.5
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 027592 82 LVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALIS 141 (221)
Q Consensus 82 l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~ 141 (221)
+..+|-.+..-++-..+..++..+|...|.. ...+.+..++..+. |+ +.+|.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E-~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAE-IDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcc-cCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 3445666777788899999999999999999 99999999999883 33 6777654
No 161
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=71.77 E-value=4.6 Score=25.57 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=28.2
Q ss_pred CCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHh
Q 027592 131 DGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKL 183 (221)
Q Consensus 131 ~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~ 183 (221)
.-.|.|.-+...+. ..-....+..+...|+.=..+.|+.+||.+.++.+
T Consensus 6 sp~~~F~~L~~~l~----~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALS----KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34566666666663 22222333334444444467788888888888765
No 162
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=70.31 E-value=25 Score=23.87 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcC---CCCCCcCHHHHHHHHHHh
Q 027592 116 QEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDA---DHDGKITAEELFGVFTKL 183 (221)
Q Consensus 116 ~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~---d~dG~I~~~e~~~~l~~~ 183 (221)
-..|+.-|..+-. +|.+....|..++. .....+-..++|+.+-. -....|+.+|++.++..+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIG----M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIG----MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcC----CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 3456666766644 78888888888884 22445556666765521 124678888888777654
No 163
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=69.86 E-value=61 Score=31.02 Aligned_cols=77 Identities=13% Similarity=0.334 Sum_probs=53.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCC---------CCCChHHHHHHHhhhcCCC----C
Q 027592 102 LEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSC---------EPACEPELKETFDFFDADH----D 168 (221)
Q Consensus 102 l~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~---------~~~~~~~l~~~f~~~D~d~----d 168 (221)
|..++..+- ...+|+.+|..+..+..-.++.++|+.++...+. .......+..+.+.|..++ +
T Consensus 210 f~~~l~klc----pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~ 285 (1189)
T KOG1265|consen 210 FYRLLNKLC----PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEK 285 (1189)
T ss_pred HHHHHHhcC----CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhc
Confidence 344444442 3367888998888777788999999998865444 3445666777777776654 6
Q ss_pred CCcCHHHHHHHHHH
Q 027592 169 GKITAEELFGVFTK 182 (221)
Q Consensus 169 G~I~~~e~~~~l~~ 182 (221)
|.|+.+-|.++|..
T Consensus 286 gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 286 GQMSTDGFVRYLMG 299 (1189)
T ss_pred cccchhhhHHHhhC
Confidence 78888888877764
No 164
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.91 E-value=5.2 Score=33.74 Aligned_cols=64 Identities=22% Similarity=0.336 Sum_probs=46.4
Q ss_pred CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHH-hhcCCCCcceeHHHH
Q 027592 149 EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIA-LVDKNGDGFVCFEDF 213 (221)
Q Consensus 149 ~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~-~~d~~~~g~i~~~eF 213 (221)
.....+.++.+|..+|+.+.|+|+-.-++.++..++ ...++.+.-.+.+ .+|..+-|.|-.++|
T Consensus 304 ~~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N-~~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 304 PENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN-RLVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred CCCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhc-ccccCHHHHHHhcCccChhhcceEEeccc
Confidence 445578899999999999999999999999999887 6666655443333 345555555544444
No 165
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=66.16 E-value=35 Score=22.48 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=14.8
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 171 ITAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 171 I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
||.+||..+.+..+ ..+++.+++.++..+
T Consensus 15 iT~~eLlkyskqy~-i~it~~QA~~I~~~l 43 (85)
T PF11116_consen 15 ITAKELLKYSKQYN-ISITKKQAEQIANIL 43 (85)
T ss_pred CCHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 45555555555555 555555555544444
No 166
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=66.09 E-value=11 Score=23.31 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=28.9
Q ss_pred hhhcCCCCCCcCHHHHHHHHHHh----------CCCCCCHHHHHHHHHhh
Q 027592 161 DFFDADHDGKITAEELFGVFTKL----------GDELCTLDDCRGMIALV 200 (221)
Q Consensus 161 ~~~D~d~dG~I~~~e~~~~l~~~----------~~~~~~~~~~~~i~~~~ 200 (221)
++||+....+||.+++.+++..- | ..++...+.+|+-.-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktg-eDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTG-EDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCC-cccHHHHHHHHHHHH
Confidence 57888899999999999988752 4 666766666666544
No 167
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=65.61 E-value=20 Score=20.30 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCC-CC-CCcccHHHHHHHHHHh
Q 027592 78 MNYELVQACKLLDR-DN-DGVVLRSELEALLIRL 109 (221)
Q Consensus 78 ~~~~l~~~F~~~D~-d~-~G~i~~~el~~~l~~~ 109 (221)
-+..|..+|..|-. +| ...|+..||..++..-
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 45678888988862 23 5699999999999764
No 168
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=64.72 E-value=8.9 Score=27.34 Aligned_cols=80 Identities=29% Similarity=0.303 Sum_probs=45.5
Q ss_pred CCCcccHHHHHHHHHHh--CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCC
Q 027592 93 NDGVVLRSELEALLIRL--GADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGK 170 (221)
Q Consensus 93 ~~G~i~~~el~~~l~~~--g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~ 170 (221)
-||.|+..|...+...+ ... .+......++..++.-....+++.+|+..+...........-+..++.....| |.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~ 112 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFG-LSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GE 112 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGC-GSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC
T ss_pred cCCCCCHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CC
Confidence 37899999998877766 222 44566666666665444446889999988842222222233445566666665 55
Q ss_pred cCHHH
Q 027592 171 ITAEE 175 (221)
Q Consensus 171 I~~~e 175 (221)
++..|
T Consensus 113 ~~~~E 117 (140)
T PF05099_consen 113 ISPEE 117 (140)
T ss_dssp -SCCH
T ss_pred CCHHH
Confidence 55444
No 169
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=64.58 E-value=29 Score=21.79 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 027592 99 RSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (221)
Q Consensus 99 ~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~ 142 (221)
-+++..++...|.. ++..++..++..-+..+--.++=..+..+
T Consensus 16 d~~m~~if~l~~~~-vs~~el~a~lrke~~~~y~~c~D~~L~~F 58 (68)
T PF07308_consen 16 DDDMIEIFALAGFE-VSKAELSAWLRKEDEKGYKECSDQLLRNF 58 (68)
T ss_pred hHHHHHHHHHcCCc-cCHHHHHHHHCCCCCccccccChHHHHHH
Confidence 34566777666776 77777777776655444333443333333
No 170
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=64.48 E-value=44 Score=23.07 Aligned_cols=44 Identities=5% Similarity=0.055 Sum_probs=38.8
Q ss_pred HHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 156 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 156 l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
+..+|-+++.-|+...+..+++.+|...| ....++.+..++..+
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG-~E~d~e~i~~visel 46 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVG-AEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhC-cccCHHHHHHHHHHh
Confidence 34567778888888999999999999999 999999999999887
No 171
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=63.62 E-value=17 Score=31.39 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCCCcccHHHHHHHHcCCCC---CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHH
Q 027592 129 EGDGYIPLEALISRVGNSSC---EPACEPELKETFDFFDADHDGKITAEELFGVFTK 182 (221)
Q Consensus 129 ~~~g~I~~~ef~~~~~~~~~---~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~ 182 (221)
.++...+-.|||....-... .....+.++.+-+.+|.|.+|.|+.+|--.+|+.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 55556777777765542221 3445677888888888888888888888877774
No 172
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=63.44 E-value=32 Score=22.65 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=27.2
Q ss_pred cccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCC
Q 027592 96 VVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDG 132 (221)
Q Consensus 96 ~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g 132 (221)
.|+..||.++-...|.. .+..++..++..+-.+.-.
T Consensus 14 ~iT~~eLlkyskqy~i~-it~~QA~~I~~~lr~k~in 49 (85)
T PF11116_consen 14 NITAKELLKYSKQYNIS-ITKKQAEQIANILRGKNIN 49 (85)
T ss_pred cCCHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCC
Confidence 67888888888888887 8888888877777544433
No 173
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=63.23 E-value=26 Score=23.47 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=39.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCC--CCCCChHHHHHHHhhhcCCCCCCc
Q 027592 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSS--CEPACEPELKETFDFFDADHDGKI 171 (221)
Q Consensus 94 ~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~--~~~~~~~~l~~~f~~~D~d~dG~I 171 (221)
||.++..|...+-..+...+........+...+..-.....++.+|...+.... .......-+..+|...-. ||.+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--DG~~ 90 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--DGEL 90 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cCCC
Confidence 567777776554444322213333333333333222222266778777774221 112223334445555543 5788
Q ss_pred CHHHHHHH
Q 027592 172 TAEELFGV 179 (221)
Q Consensus 172 ~~~e~~~~ 179 (221)
+..|-.-+
T Consensus 91 ~~~E~~~l 98 (106)
T cd07316 91 SEAERELL 98 (106)
T ss_pred CHHHHHHH
Confidence 87775443
No 174
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=63.05 E-value=59 Score=24.02 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=52.9
Q ss_pred CCCCcccHHHHHHHHHHhCCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCC
Q 027592 92 DNDGVVLRSELEALLIRLGAD-PPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGK 170 (221)
Q Consensus 92 d~~G~i~~~el~~~l~~~g~~-~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~ 170 (221)
+.|.+|....+..+++..-.. +.-..+....+..+ -.||+.++. -++-+.+-.++.-.
T Consensus 28 eqDr~LPIANV~RIMK~~lP~naKIsKDAKE~vQEC---------VSEfISFvT------------~EAsekC~~EkRKT 86 (168)
T KOG0869|consen 28 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQEC---------VSEFISFVT------------GEASEKCQREKRKT 86 (168)
T ss_pred hhhhhccHHHHHHHHHhcCCcccccchHHHHHHHHH---------HHHHHHHHh------------hHHHHHHHHHhcCc
Confidence 345677778888877764211 12223455555554 458888874 23444555667788
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 171 ITAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 171 I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
|+.+++..+|..+| ..--.+-+...+..|
T Consensus 87 IngdDllwAm~tLG-Fe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 87 INGDDLLWAMSTLG-FENYAEPLKIYLQKY 115 (168)
T ss_pred ccHHHHHHHHHHcC-cHhHHHHHHHHHHHH
Confidence 99999999999998 444344444444433
No 175
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.43 E-value=11 Score=32.15 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=44.0
Q ss_pred HHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHH
Q 027592 157 KETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 216 (221)
Q Consensus 157 ~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~ 216 (221)
.++|..+.+ -+|+|+..--+..+-. ..++..-+-.|+...|.|.||.++-+||.-.
T Consensus 447 de~fy~l~p-~~gk~sg~~ak~~mv~---sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 447 DEIFYTLSP-VNGKLSGRNAKKEMVK---SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred Hhhhhcccc-cCceeccchhHHHHHh---ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 345666654 4788888766665554 5688999999999999999999999999743
No 176
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=62.28 E-value=56 Score=23.45 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=43.8
Q ss_pred cccHHHHHHHHH-HhCCCCCCHHHHHHHHHhhcCCCC-------------CcccHHHHHHHHcCCCCCCCChHHHHHHHh
Q 027592 96 VVLRSELEALLI-RLGADPPTQEEVKSMLSEVDREGD-------------GYIPLEALISRVGNSSCEPACEPELKETFD 161 (221)
Q Consensus 96 ~i~~~el~~~l~-~~g~~~~~~~~~~~l~~~~d~~~~-------------g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~ 161 (221)
.+...||..++. .+++..-+...+..++..|..+.. ..++|.+-+.++. ...++-.....
T Consensus 38 ~l~HGef~~Wle~~~~~s~rtA~~~M~va~~yg~~~~~~~~~~~~~~~~l~~L~~tqal~Ll~------lpeeeR~~fi~ 111 (130)
T PF11300_consen 38 LLPHGEFGKWLEEEVGYSQRTAQRFMQVAEEYGSNQSSSSDSDSSNSSALPNLSYTQALILLG------LPEEEREEFIE 111 (130)
T ss_pred hCCHHHHHHHHHHHcCcCHHHHHHHHHHHHHhCcccccCcccccccchHHHhhhHHHHHHHHc------CCchHHHHHHH
Confidence 477788999997 666553344456666677754311 2355655555552 22222233334
Q ss_pred hhcCCCCCCcCHHHHHHHHH
Q 027592 162 FFDADHDGKITAEELFGVFT 181 (221)
Q Consensus 162 ~~D~d~dG~I~~~e~~~~l~ 181 (221)
..|. +.+|..||++.++
T Consensus 112 ~~dv---~~Mt~REL~~avk 128 (130)
T PF11300_consen 112 ENDV---ERMTVRELQQAVK 128 (130)
T ss_pred Hhhh---ccccHHHHHHHHh
Confidence 4444 3388888888775
No 177
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.02 E-value=7.3 Score=32.91 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHH-HHHHHHhhcCCCCCcccHHHHHHHH
Q 027592 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEE-VKSMLSEVDREGDGYIPLEALISRV 143 (221)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~-~~~l~~~~d~~~~g~I~~~ef~~~~ 143 (221)
.++++++|+.+|+.++|+|+..-+..++..++.. .++.+ +..+-..+|.+.-|.|-..+|+..+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~-vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRL-VSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhccc-ccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 4568999999999999999999999999998854 55554 4444455666677777777766555
No 178
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=61.94 E-value=28 Score=22.03 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=29.2
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 027592 68 SDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRL 109 (221)
Q Consensus 68 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~ 109 (221)
..+...+++.....|...|..|- .+.|+.+||.+.++.+
T Consensus 16 ~~l~~~l~~~~~~~l~~~Y~~~k---~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 16 SALSKHLPPSKMDLLQKHYEEFK---KKKISREEFVRKLRQI 54 (70)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHH
Confidence 34455667778878888777774 5699999999988865
No 179
>PF13551 HTH_29: Winged helix-turn helix
Probab=61.67 E-value=46 Score=22.30 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH-H-HhCCCCCCHHHHHHHHHhh
Q 027592 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALL-I-RLGADPPTQEEVKSMLSEV 126 (221)
Q Consensus 74 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l-~-~~g~~~~~~~~~~~l~~~~ 126 (221)
+++++.+.|.+.+.....++.+..+..++...+ . ..|.. ++...+.+++...
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~-~s~~ti~r~L~~~ 111 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGID-VSPSTIRRILKRA 111 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCcc-CCHHHHHHHHHHC
Confidence 455778888888887665544578999999865 3 44667 8899998888754
No 180
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=61.36 E-value=9 Score=24.92 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=13.0
Q ss_pred CCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 168 DGKITAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 168 dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
.|+||++|+..+|.. ..++.+.++.++..+
T Consensus 19 ~G~lT~~eI~~~L~~---~~~~~e~id~i~~~L 48 (82)
T PF03979_consen 19 KGYLTYDEINDALPE---DDLDPEQIDEIYDTL 48 (82)
T ss_dssp HSS-BHHHHHHH-S----S---HHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCc---cCCCHHHHHHHHHHH
Confidence 455555555555553 225555555555544
No 181
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=61.18 E-value=18 Score=26.25 Aligned_cols=35 Identities=11% Similarity=0.031 Sum_probs=25.9
Q ss_pred CCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 027592 167 HDGKITAEELFGVFTKLGDELCTLDDCRGMIALVD 201 (221)
Q Consensus 167 ~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d 201 (221)
..+.|+++-|+.+|...-...++++.+..+|..|-
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 46699999999999987547799999999998883
No 182
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=61.01 E-value=8.2 Score=23.50 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHH
Q 027592 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLE 137 (221)
Q Consensus 74 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ 137 (221)
|++....-|..+|.... +.+.+...++...| + .+...+..++..+. ..|.|.++
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L---~---vs~~tvt~ml~~L~--~~GlV~~~ 55 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERL---G---VSPPTVTEMLKRLA--EKGLVEYE 55 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHH---T---S-HHHHHHHHHHHH--HTTSEEEE
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHH---C---CChHHHHHHHHHHH--HCCCEEec
Confidence 45567778888888876 67899999999988 3 66788888887773 34555443
No 183
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=58.59 E-value=36 Score=22.77 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=25.1
Q ss_pred CCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHH
Q 027592 131 DGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTK 182 (221)
Q Consensus 131 ~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~ 182 (221)
||.|+-.|-..+-...............+...+..-.....+..++...+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRR 64 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 6677777655444322222222333444444444333333566666666654
No 184
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=58.51 E-value=38 Score=26.56 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=10.1
Q ss_pred HHHHHHHHHhCCCC
Q 027592 100 SELEALLIRLGADP 113 (221)
Q Consensus 100 ~el~~~l~~~g~~~ 113 (221)
.+|..++..+|..|
T Consensus 61 ~~f~~~~~~lGvdp 74 (223)
T PF04157_consen 61 SQFQSMCASLGVDP 74 (223)
T ss_dssp HHHHHHHHHHT--C
T ss_pred HHHHHHHHHcCCCc
Confidence 58999999999874
No 185
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=58.37 E-value=60 Score=22.61 Aligned_cols=54 Identities=7% Similarity=-0.010 Sum_probs=41.6
Q ss_pred HHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHH
Q 027592 156 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSR 215 (221)
Q Consensus 156 l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~ 215 (221)
...+|-++..-|+..+|.+++..+|...| ..+....+..++..+. ..+++|.+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaG-veVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVN-ADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 34456666677888899999999999999 9999999999998872 245555543
No 186
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=57.30 E-value=36 Score=19.67 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 125 (221)
.++++++..|...|.. +. +.+..+...+...+| ++...|..+|..
T Consensus 6 ~~~~~~~~~L~~~f~~---~~--~P~~~~~~~la~~~~---l~~~qV~~WF~n 50 (56)
T smart00389 6 SFTPEQLEELEKEFQK---NP--YPSREEREELAAKLG---LSERQVKVWFQN 50 (56)
T ss_pred cCCHHHHHHHHHHHHh---CC--CCCHHHHHHHHHHHC---cCHHHHHHhHHH
Confidence 3677888889998874 22 789999999999888 558888888764
No 187
>PLN02223 phosphoinositide phospholipase C
Probab=55.77 E-value=60 Score=29.22 Aligned_cols=65 Identities=11% Similarity=-0.011 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHh----CCCCCCHHHHHHHHHhhcCCC--------CCcccHHHHHHHHcC
Q 027592 80 YELVQACKLLDRDNDGVVLRSELEALLIRL----GADPPTQEEVKSMLSEVDREG--------DGYIPLEALISRVGN 145 (221)
Q Consensus 80 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~----g~~~~~~~~~~~l~~~~d~~~--------~g~I~~~ef~~~~~~ 145 (221)
..+..+|..+- .++|.++.+.|..+|.-+ |....+.++++.++..+-... .+.++++.|..++..
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 34788888884 578999999999999333 322266677777776653221 256999999999964
No 188
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=55.06 E-value=70 Score=22.30 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=40.8
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 027592 84 QACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALIS 141 (221)
Q Consensus 84 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~ 141 (221)
..|-.+-.-|+..++.+++..+|...|.. .....+..+++.+.. .+.+|++.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGve-Vd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNAD-VEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCC-ccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34445555567789999999999999998 888899999988832 66777765
No 189
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=54.57 E-value=48 Score=20.79 Aligned_cols=25 Identities=8% Similarity=0.207 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 174 EELFGVFTKLGDELCTLDDCRGMIAL 199 (221)
Q Consensus 174 ~e~~~~l~~~~~~~~~~~~~~~i~~~ 199 (221)
+++..++...| ..++..++..+++.
T Consensus 17 ~~m~~if~l~~-~~vs~~el~a~lrk 41 (68)
T PF07308_consen 17 DDMIEIFALAG-FEVSKAELSAWLRK 41 (68)
T ss_pred HHHHHHHHHcC-CccCHHHHHHHHCC
Confidence 34555555445 55555555555554
No 190
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=54.02 E-value=44 Score=20.53 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=11.8
Q ss_pred CChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHh
Q 027592 151 ACEPELKETFDFFDADHDGKITAEELFGVFTKL 183 (221)
Q Consensus 151 ~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~ 183 (221)
...+++..+|..+ -+|.++..++..+|..+
T Consensus 15 Ls~~e~~~~~~~i---~~g~~s~~qiaAfL~al 44 (66)
T PF02885_consen 15 LSREEAKAAFDAI---LDGEVSDAQIAAFLMAL 44 (66)
T ss_dssp --HHHHHHHHHHH---HTTSS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---HcCCCCHHHHHHHHHHH
Confidence 3334444444433 23445555555544443
No 191
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.10 E-value=26 Score=30.01 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=46.6
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 027592 82 LVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (221)
Q Consensus 82 l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~ 142 (221)
..++|..+.+ -||.|+...-...+..- . +++..+.++|...|.+.||.++=+||.-.
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv~s--k-lpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMVKS--K-LPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHHhc--c-CchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 5667777765 48999998888877643 3 77889999999999999999999999753
No 192
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=52.35 E-value=43 Score=19.08 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHH
Q 027592 174 EELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 217 (221)
Q Consensus 174 ~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l 217 (221)
+|....|..+| ++..++..++..+.. ...++.++.++..
T Consensus 4 ~d~~~AL~~LG---y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 4 EDALEALISLG---YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHTT---S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 57778888888 899999999998865 3446677776543
No 193
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=52.08 E-value=53 Score=20.02 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=26.4
Q ss_pred CCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 169 GKITAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 169 G~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
-.+|.+|+..++..++ ...+..++-.||..+
T Consensus 8 ~~lTeEEl~~~i~~L~-~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLD-EIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhc-CCCCHHHHHHHHHHH
Confidence 4688999999999999 888888888888765
No 194
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=51.86 E-value=33 Score=24.84 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=39.0
Q ss_pred CCCCcCHHHHHHHHHHhCC--------CCCCHHHHHHHHHhhcCCCCc-ceeHHHHHHH
Q 027592 167 HDGKITAEELFGVFTKLGD--------ELCTLDDCRGMIALVDKNGDG-FVCFEDFSRM 216 (221)
Q Consensus 167 ~dG~I~~~e~~~~l~~~~~--------~~~~~~~~~~i~~~~d~~~~g-~i~~~eF~~~ 216 (221)
||-.||.+||.+++..-.. ..+..+++..+...+...+.+ .+++.|-+++
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 6788999999999986421 558888999999998776655 4998887765
No 195
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.95 E-value=88 Score=22.83 Aligned_cols=94 Identities=20% Similarity=0.204 Sum_probs=59.5
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHh--CCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHH
Q 027592 83 VQACKLLDRDNDGVVLRSELEALLIRL--GADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETF 160 (221)
Q Consensus 83 ~~~F~~~D~d~~G~i~~~el~~~l~~~--g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f 160 (221)
.-+|+.+..| |.++..|...+..-+ .+. .+..++..++.....-+...|++..|...+..........+-+..+|
T Consensus 33 ~Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~-i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mw 109 (148)
T COG4103 33 ALLFHVMEAD--GTVSESEREAFRAILKENFG-IDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMW 109 (148)
T ss_pred HHHHHHHhcc--cCcCHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3778888765 566666654443322 344 77888888887765556667999999988854443444455566667
Q ss_pred hhhcCCCCCCcCHHHHHHHHH
Q 027592 161 DFFDADHDGKITAEELFGVFT 181 (221)
Q Consensus 161 ~~~D~d~dG~I~~~e~~~~l~ 181 (221)
+..-. ||.++.-|-.-+++
T Consensus 110 eIa~A--Dg~l~e~Ed~vi~R 128 (148)
T COG4103 110 EIAYA--DGELDESEDHVIWR 128 (148)
T ss_pred HHHHc--cccccHHHHHHHHH
Confidence 76654 56666655444443
No 196
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.66 E-value=1.2e+02 Score=23.71 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=53.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHH----hhhcCCCC
Q 027592 93 NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETF----DFFDADHD 168 (221)
Q Consensus 93 ~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f----~~~D~d~d 168 (221)
-||+|+..|-..+..++... -.+.+.+.++..-=.. -++.++..... .+.+...++| -.+|. +
T Consensus 123 aDGhIDe~ERa~I~~~l~es-G~d~e~~~~le~El~~---PlD~~~ia~~a-------~~ee~a~ElY~ASrl~id~--d 189 (225)
T COG2979 123 ADGHIDEKERARIMQKLQES-GVDPEAQAFLEQELEQ---PLDPDEIAAAA-------RNEEQALELYLASRLAIDD--D 189 (225)
T ss_pred hcCCcCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHhC---CCCHHHHHHHh-------cCHHHHHHHHHHHHHhcCc--h
Confidence 58999999999999666433 3345555555443222 38999999998 4455555554 23444 3
Q ss_pred CCcCHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 169 GKITAEELFGVFTKLGDELCTLDDCRGMIAL 199 (221)
Q Consensus 169 G~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~ 199 (221)
.+...-=+...-..++ +.+..++.|=..
T Consensus 190 ~r~Er~YL~~La~~L~---L~dalvd~lE~q 217 (225)
T COG2979 190 SRMERSYLNALAGALG---LPDALVDHLERQ 217 (225)
T ss_pred hHHHHHHHHHHHHHhC---CCHHHHHHHHHH
Confidence 3333332333333444 777766665443
No 197
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=49.86 E-value=1.5e+02 Score=26.36 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=44.5
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh---cC-----CCCCcccHHHHHHHHc
Q 027592 85 ACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV---DR-----EGDGYIPLEALISRVG 144 (221)
Q Consensus 85 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~---d~-----~~~g~I~~~ef~~~~~ 144 (221)
+|..|-....+.++..-|..+|++.|+. -++..+..+++.+ +. ...+.++-+.|..++.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLr-tsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLR-TSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCC-cCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 4666655556999999999999999998 7777776666544 32 2346889999998885
No 198
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=49.12 E-value=7.2 Score=27.84 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=6.4
Q ss_pred CCCcccHHHHHHHH
Q 027592 130 GDGYIPLEALISRV 143 (221)
Q Consensus 130 ~~g~I~~~ef~~~~ 143 (221)
-||.|+-+|-..+.
T Consensus 36 aDG~v~~~E~~~i~ 49 (140)
T PF05099_consen 36 ADGEVDPEEIEAIR 49 (140)
T ss_dssp TTSS--CHHHHHHH
T ss_pred cCCCCCHHHHHHHH
Confidence 35666666655443
No 199
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=48.11 E-value=51 Score=25.04 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=41.1
Q ss_pred cccccccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 67 WSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (221)
Q Consensus 67 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 125 (221)
.....+.|+.++...|...|. +++++-..|-.++.+.|+ +++.++.-+|..
T Consensus 102 ~kr~RT~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~---LsetQVkvWFQN 152 (197)
T KOG0843|consen 102 PKRIRTAFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLS---LSETQVKVWFQN 152 (197)
T ss_pred CCccccccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHcC---CChhHhhhhhhh
Confidence 345567899999999999886 578999999999998887 568888777754
No 200
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=47.84 E-value=1e+02 Score=22.17 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=47.0
Q ss_pred HHHHHHHh--hcCCCCCcccHHHHHHHHcCCCC--CCCChH-HHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHH
Q 027592 118 EVKSMLSE--VDREGDGYIPLEALISRVGNSSC--EPACEP-ELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDD 192 (221)
Q Consensus 118 ~~~~l~~~--~d~~~~g~I~~~ef~~~~~~~~~--~~~~~~-~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~ 192 (221)
.+..+|.. -.......++.++|+.-+.+... .....+ .+..+|.+++. .|+..|+.++...+. .+
T Consensus 58 ~ir~~~~~~p~~~~~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~r----~Is~gei~~v~s~Lp------~~ 127 (135)
T COG5502 58 EIRDILVDGPDLGPPKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLKR----HISPGEIDKVRSRLP------KE 127 (135)
T ss_pred HHHHHHhcCCcCCCCCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHCc------HH
Confidence 34455433 22345678999999998875554 333333 44488999965 599999999998776 55
Q ss_pred HHHHHH
Q 027592 193 CRGMIA 198 (221)
Q Consensus 193 ~~~i~~ 198 (221)
+.+||.
T Consensus 128 ~~elw~ 133 (135)
T COG5502 128 IRELWE 133 (135)
T ss_pred HHHhcc
Confidence 666653
No 201
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=47.82 E-value=48 Score=25.47 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=41.3
Q ss_pred CCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHH-HHHHHHHhCCCCCCHHHHHHHHH-hhcCCCCc
Q 027592 129 EGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEE-LFGVFTKLGDELCTLDDCRGMIA-LVDKNGDG 206 (221)
Q Consensus 129 ~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e-~~~~l~~~~~~~~~~~~~~~i~~-~~d~~~~g 206 (221)
|=||.|+.+++...+...... .++. .+++.--++.|+..+ |..++..++ .+.+|+-+++. .+-.|.
T Consensus 9 DFDGTITl~Ds~~~itdtf~~----~e~k---~l~~~vls~tiS~rd~~g~mf~~i~---~s~~Eile~llk~i~Idp-- 76 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGP----GEWK---ALKDGVLSKTISFRDGFGRMFGSIH---SSLEEILEFLLKDIKIDP-- 76 (220)
T ss_pred cCCCceEecchhHHHHhccCc----hHHH---HHHHHHhhCceeHHHHHHHHHHhcC---CCHHHHHHHHHhhcccCc--
Confidence 446788888888777422211 2222 333333566777554 445555555 44455444433 233333
Q ss_pred ceeHHHHHHHHHhC
Q 027592 207 FVCFEDFSRMMELQ 220 (221)
Q Consensus 207 ~i~~~eF~~~l~~~ 220 (221)
.|.||..+++.+
T Consensus 77 --~fKef~e~ike~ 88 (220)
T COG4359 77 --GFKEFVEWIKEH 88 (220)
T ss_pred --cHHHHHHHHHHc
Confidence 467777777654
No 202
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=46.37 E-value=52 Score=27.70 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=27.5
Q ss_pred CCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHH
Q 027592 168 DGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 217 (221)
Q Consensus 168 dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l 217 (221)
.|.||++|-...+.... ...+++.++.+++.++ |+-+||..++
T Consensus 300 ~G~itReeal~~v~~~d-~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYD-GEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhc-ccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 56777777666666654 4555566666666662 6667776654
No 203
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.62 E-value=52 Score=23.95 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=28.4
Q ss_pred HHHhhhcCCCCCCcCHHHHHHHHHHh--CCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 027592 158 ETFDFFDADHDGKITAEELFGVFTKL--GDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 158 ~~f~~~D~d~dG~I~~~e~~~~l~~~--~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~ 218 (221)
.+|.++.. ||.++..|...+..-+ . ..++.+++..++.....-+...+++-.|..-|.
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~-f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKEN-FGIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455543 3455555544433322 2 445566666655555444444555555555544
No 204
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=45.45 E-value=1.9e+02 Score=24.51 Aligned_cols=138 Identities=16% Similarity=0.107 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhCC---CCCCcccHHHHHHHHHHhCCC---------CCCHH-----HHHHHHHhhcCCCCCcccHHHH
Q 027592 77 DMNYELVQACKLLDR---DNDGVVLRSELEALLIRLGAD---------PPTQE-----EVKSMLSEVDREGDGYIPLEAL 139 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~---d~~G~i~~~el~~~l~~~g~~---------~~~~~-----~~~~l~~~~d~~~~g~I~~~ef 139 (221)
-.+..+.++|+.-.. +.+-.|+..-+...+...... -+..+ -+..++..+|..+.|.++.-..
T Consensus 53 vdiwnmieafren~ln~l~~~tei~~srlea~lstif~qlnkrL~ss~~id~e~sislllaflLaA~ds~~~g~~~vfav 132 (434)
T KOG4301|consen 53 VDIWNMIEAFRENGLNNLDPNTEINVSRLEAVLSTIFYQLNKRLPSSHQIDVEQSISLLLAFLLAAEDSEGQGKQQVFAV 132 (434)
T ss_pred HHHHHHHHHHHhccccCCCCcchhhhhHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHhhcCccCCCCceeecc
Confidence 445556666654332 345667777666655544221 01111 2456677889888898876655
Q ss_pred HHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCC----------CCCCHHHHHHHHHhhcCCCCccee
Q 027592 140 ISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGD----------ELCTLDDCRGMIALVDKNGDGFVC 209 (221)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~----------~~~~~~~~~~i~~~~d~~~~g~i~ 209 (221)
...++ ..+.+.-.+.++.+|..... ..|.+..-.+.+++...-+ .+.++..+...|.. ..+|.
T Consensus 133 kiala-tlc~gk~~dklryIfs~isd-s~gim~~i~~~~fl~evlslpT~v~e~psfg~te~~a~~cf~q-----qrKv~ 205 (434)
T KOG4301|consen 133 KIALA-TLCGGKIKDKLRYIFSLISD-SRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTELSARLCFLQ-----QRKVE 205 (434)
T ss_pred hhhhh-hhccchHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHcCCchhhcCCCcchHHHHHHHHHHH-----HHHHH
Confidence 55553 44566678899999988854 5788888888888776421 23344444444433 35688
Q ss_pred HHHHHHHHHhCC
Q 027592 210 FEDFSRMMELQR 221 (221)
Q Consensus 210 ~~eF~~~l~~~~ 221 (221)
++.|++.|...|
T Consensus 206 Ln~fldtl~sdp 217 (434)
T KOG4301|consen 206 LNQFLDTLMSDP 217 (434)
T ss_pred HHHHHHHHhcCC
Confidence 888888776543
No 205
>PHA02105 hypothetical protein
Probab=44.99 E-value=55 Score=19.76 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=29.6
Q ss_pred CcCHHHHHHHHHHhC--CCCCCHHHHHHHHHhhcCCCC--cceeHHHHHHHHH
Q 027592 170 KITAEELFGVFTKLG--DELCTLDDCRGMIALVDKNGD--GFVCFEDFSRMME 218 (221)
Q Consensus 170 ~I~~~e~~~~l~~~~--~~~~~~~~~~~i~~~~d~~~~--g~i~~~eF~~~l~ 218 (221)
++|.+||...+.... ..++..+.++.+-.-+..-.- --++|+||..+|-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 467777777776542 155666666666555533322 2478888877664
No 206
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=44.24 E-value=8.7 Score=29.57 Aligned_cols=55 Identities=16% Similarity=0.340 Sum_probs=39.6
Q ss_pred Hhhhc-CCCCCCcCHHHHHHHHHHhCCCCCCHH-HHHHHHHhhcCCCCcceeHHHHHHHHH
Q 027592 160 FDFFD-ADHDGKITAEELFGVFTKLGDELCTLD-DCRGMIALVDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 160 f~~~D-~d~dG~I~~~e~~~~l~~~~~~~~~~~-~~~~i~~~~d~~~~g~i~~~eF~~~l~ 218 (221)
|-.+| .-.||+++-.|+.-+-.. -++.+ -+..+|...|.|+||.|.++|+..++.
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap----~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAP----LIPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCccccccccccccccCC----cccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 44445 346999999887654332 22333 367889999999999999999988764
No 207
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=44.04 E-value=64 Score=26.03 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=40.6
Q ss_pred cccccccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 67 WSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (221)
Q Consensus 67 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 125 (221)
-+...++||.+++.+|+.-|+. +.+|+...-..+...||++ +.+|.-+|..
T Consensus 246 eKRPRTAFtaeQL~RLK~EF~e-----nRYlTEqRRQ~La~ELgLN---EsQIKIWFQN 296 (342)
T KOG0493|consen 246 EKRPRTAFTAEQLQRLKAEFQE-----NRYLTEQRRQELAQELGLN---ESQIKIWFQN 296 (342)
T ss_pred hcCccccccHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhCcC---HHHhhHHhhh
Confidence 3455778999999999998863 5699999888888888855 8888877753
No 208
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=43.89 E-value=1.1e+02 Score=21.23 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=40.9
Q ss_pred HHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHH
Q 027592 157 KETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSR 215 (221)
Q Consensus 157 ~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~ 215 (221)
..+|-++...|+..+|.+++..+|...| ..+....+..+++.+. ..+++|.+.
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaG-veVe~~~~~lf~~~L~-----GKdi~eLIa 56 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVG-VEVDDEKLNKVISELE-----GKDVEELIA 56 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 3456666677888999999999999999 8888888888888772 145566554
No 209
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=42.80 E-value=46 Score=25.39 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=24.9
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcC
Q 027592 90 DRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDR 128 (221)
Q Consensus 90 D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~ 128 (221)
..|.+|++..+||...+..-+.. .+.+++..+...-+.
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~-~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLW-VTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT---HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCC-CCHHHHHHHHhhCCC
Confidence 46789999999999999887766 889999998877544
No 210
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=42.75 E-value=78 Score=19.65 Aligned_cols=32 Identities=16% Similarity=0.530 Sum_probs=28.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (221)
Q Consensus 94 ~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~ 126 (221)
|--|+.+-++..+...|.. +++..+..+.+..
T Consensus 29 NPpine~mir~M~~QMG~k-pSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRK-PSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 5589999999999999999 9999999888765
No 211
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=42.48 E-value=59 Score=24.70 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=29.8
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 027592 90 DRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD 127 (221)
Q Consensus 90 D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d 127 (221)
-.|.+|+++.++|...++.-+.. .+.+.+..+...-|
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~-~t~~~l~~vV~~d~ 63 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKW-VTRELLEAVVESDD 63 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCC-CCHHHHHHHHHcCC
Confidence 35789999999999999765555 88999998887654
No 212
>PRK01294 lipase chaperone; Provisional
Probab=42.36 E-value=2.1e+02 Score=24.15 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 027592 81 ELVQACKLLDRDNDGVVLRSELEALLIRL 109 (221)
Q Consensus 81 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~ 109 (221)
.++..|..|=. .-|..+..++...+...
T Consensus 87 ~~Rd~FDYfLs-~~gE~~l~~i~~~v~~~ 114 (336)
T PRK01294 87 ALRDFFDYFLS-ALGELDLAAIDALVERE 114 (336)
T ss_pred HHHHHHHHHhh-ccCCCCHHHHHHHHHHH
Confidence 35666666643 35566777776666553
No 213
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=42.18 E-value=48 Score=20.53 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.8
Q ss_pred CCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCC
Q 027592 167 HDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNG 204 (221)
Q Consensus 167 ~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~ 204 (221)
.++.++..++...|...| ..+++..+...++.++.+|
T Consensus 10 ~~~P~g~~~l~~~L~~~g-~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRG-EELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcC-hhhhHHHHHHHHHHHHHCC
Confidence 356788888888888777 8888888888888877665
No 214
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=42.13 E-value=1.3e+02 Score=23.61 Aligned_cols=117 Identities=16% Similarity=0.267 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC--CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCC-CCh
Q 027592 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLG--ADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEP-ACE 153 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~-~~~ 153 (221)
+-..+|.++....-..+.|.|+..|+...+.... ..-.+.+++.+.++.+..=+.| +....|-.........+ ...
T Consensus 94 ELa~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~~~e~ 172 (223)
T PF04157_consen 94 ELAVQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVPYSEL 172 (223)
T ss_dssp HHHHHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST-CHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCCchhh
Confidence 4455666766666655668999999999998864 3337888999999998776665 44444432221122222 222
Q ss_pred -HHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 154 -PELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 154 -~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
.....+.........|++|..++..-+ + ++...+.+.+..+
T Consensus 173 ~~~~~~il~~~~~~~~g~vt~~~l~~~~---~---ws~~~a~~~L~~~ 214 (223)
T PF04157_consen 173 SKDQSRILELAEEENGGGVTASELAEKL---G---WSVERAKEALEEL 214 (223)
T ss_dssp -HHHHHHHHHH--TTTSEEEHHHHHHHH---T---B-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCCCCHHHHHHHh---C---CCHHHHHHHHHHH
Confidence 444566666635568999999888755 3 6666666666654
No 215
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=42.03 E-value=79 Score=19.14 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=32.5
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 027592 71 SADISLDMNYELVQACKLLDRDNDGV----VLRSELEALLIRLGADPPTQEEVKSML 123 (221)
Q Consensus 71 ~~~l~~~~~~~l~~~F~~~D~d~~G~----i~~~el~~~l~~~g~~~~~~~~~~~l~ 123 (221)
.+.||.++.+.|...|.. .|+ ++..+...+...+|+. ...+.-+|
T Consensus 5 RT~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl~---~~vvKVWf 53 (58)
T TIGR01565 5 RTKFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGVT---RKVFKVWM 53 (58)
T ss_pred CCCCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCCC---HHHeeeec
Confidence 456888999999999886 345 7788888888888754 55444433
No 216
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=41.86 E-value=39 Score=28.36 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=45.5
Q ss_pred HHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 159 TFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 159 ~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
....+|..+.|.++.--.+-.|..+. .+--.+.+..||... .|.+|.+.+-.|.++++.
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc-~gk~~dklryIfs~i-sds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLC-GGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhc-cchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHH
Confidence 34678999999999988888888775 444456677888887 678888888888777764
No 217
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=41.76 E-value=1.2e+02 Score=21.05 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=42.1
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 027592 84 QACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRV 143 (221)
Q Consensus 84 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~ 143 (221)
.+|-.+-..|+..++.+++..+|...|.. .....+..+++.+.. .++++++..-
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGve-Ve~~~~~lf~~~L~G-----Kdi~eLIa~g 58 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVE-VDDEKLNKVISELEG-----KDVEELIAAG 58 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCC-ccHHHHHHHHHHHcC-----CCHHHHHHHh
Confidence 34445555677799999999999999998 888888888888732 6678877754
No 218
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=40.62 E-value=33 Score=25.20 Aligned_cols=83 Identities=13% Similarity=0.139 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCCCC----C-cccHHHHHHHHHHhCCC---CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCC----
Q 027592 81 ELVQACKLLDRDND----G-VVLRSELEALLIRLGAD---PPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSC---- 148 (221)
Q Consensus 81 ~l~~~F~~~D~d~~----G-~i~~~el~~~l~~~g~~---~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~---- 148 (221)
.+.+.|+.|-.-|+ | .++..++..++...++- ..+.-.+.-.|..+-...-+.|+|++|...+..+..
T Consensus 13 ~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k 92 (180)
T KOG4070|consen 13 GLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRFK 92 (180)
T ss_pred hHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhhc
Confidence 34555555544332 2 56666777777765431 034445555666665555678999999766632211
Q ss_pred CCCChHHHHHHHhhh
Q 027592 149 EPACEPELKETFDFF 163 (221)
Q Consensus 149 ~~~~~~~l~~~f~~~ 163 (221)
.....+++..+.+++
T Consensus 93 ~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 93 GKSKEEALDAICQLL 107 (180)
T ss_pred CCCHHHHHHHHHHHH
Confidence 233444455554444
No 219
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=39.64 E-value=78 Score=26.35 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=41.7
Q ss_pred cccccccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 67 WSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (221)
Q Consensus 67 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 125 (221)
-....+.||..|+.+|...|... .+|+..|=..+...|| +++.+|..+|..
T Consensus 172 ~RksRTaFT~~Ql~~LEkrF~~Q-----KYLS~~DR~~LA~~Lg---LTdaQVKtWfQN 222 (309)
T KOG0488|consen 172 RRKSRTAFSDHQLFELEKRFEKQ-----KYLSVADRIELAASLG---LTDAQVKTWFQN 222 (309)
T ss_pred cccchhhhhHHHHHHHHHHHHHh-----hcccHHHHHHHHHHcC---CchhhHHHHHhh
Confidence 34456788999999999999863 3999999999998888 669999888864
No 220
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=38.58 E-value=77 Score=25.70 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=4.6
Q ss_pred CCcccHHHHH
Q 027592 131 DGYIPLEALI 140 (221)
Q Consensus 131 ~g~I~~~ef~ 140 (221)
||.|+-.|..
T Consensus 69 DG~Vse~Ei~ 78 (267)
T PRK09430 69 KGRVTEADIR 78 (267)
T ss_pred CCCcCHHHHH
Confidence 4444444443
No 221
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=38.44 E-value=3.3e+02 Score=25.26 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=19.4
Q ss_pred ccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhC
Q 027592 134 IPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLG 184 (221)
Q Consensus 134 I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~ 184 (221)
..+..++..+. .....+....+|+.+-. -..+++.-+...+...|
T Consensus 159 ~~~n~Li~~y~----k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 159 YMMNRVLLMHV----KCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHHHh----cCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCc
Confidence 44444444442 22344444455544421 23445544444444433
No 222
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=38.40 E-value=52 Score=25.12 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=20.4
Q ss_pred cCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 164 DADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 164 D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
..|.+|++..+|+.+.+..-+ ..++.+++..+...-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~-~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKG-LWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT--TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcC-CCCCHHHHHHHHhhC
Confidence 456678888888887777766 667777777777653
No 223
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=38.18 E-value=87 Score=25.89 Aligned_cols=85 Identities=11% Similarity=-0.021 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhCC--CCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHH
Q 027592 79 NYELVQACKLLDR--DNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPEL 156 (221)
Q Consensus 79 ~~~l~~~F~~~D~--d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l 156 (221)
++.+...|..-+. +.--+-+..|=.+.....+.. .....+...+..+|.+.+-.+.=+-|+.++...+.....+..|
T Consensus 40 vA~~~~~~~~~~d~p~~~p~~t~~e~~er~~~~k~e-~~~~~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskL 118 (335)
T KOG0113|consen 40 VAQYLSTFEDPKDAPPKFPVETPEEPLERGRREKTE-KIPHKLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKL 118 (335)
T ss_pred HHHHHHhhcCcccCCCcCcccchhhHHHhhhhhhhh-hhHHHHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHH
Confidence 4445555544332 222333444444444444544 4445577778888888776666688888886666677888888
Q ss_pred HHHHhhhc
Q 027592 157 KETFDFFD 164 (221)
Q Consensus 157 ~~~f~~~D 164 (221)
+..|..|-
T Consensus 119 rreF~~YG 126 (335)
T KOG0113|consen 119 RREFEKYG 126 (335)
T ss_pred HHHHHhcC
Confidence 88888773
No 224
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=37.07 E-value=2.2e+02 Score=24.99 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
.+.|+.+-+.+|.|.+|.|+.+|-..+|+.-.. .......+- +.|- ..|..|+.+++-..|.
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmk--y~~~~~kr~-~~fH-~dD~~ItVedLWeaW~ 128 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMK--YRDSTRKRS-EKFH-GDDKHITVEDLWEAWK 128 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhh--cccchhhhh-hhcc-CCccceeHHHHHHHHH
Confidence 466777788999999999999999888876321 111111111 0121 1355677777776663
No 225
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.83 E-value=2.3e+02 Score=22.98 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=52.2
Q ss_pred HHHHHHHHHHh-CCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHH
Q 027592 79 NYELVQACKLL-DRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELK 157 (221)
Q Consensus 79 ~~~l~~~F~~~-D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~ 157 (221)
+..+.+.|..+ |.+-+..|-.+=+.++...+|+. +.+-.+.-+--.++...-+..+.+||+..+. ...-...+.++
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~-p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~--~l~~dS~d~lq 139 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVE-PEDISVLVLAWKLGAATMCEFSREEFLKGMT--ALGCDSIDKLQ 139 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCC-chhHHHHHHHHHhccchhhhhhHHHHHHHHH--HcCCCcHHHHH
Confidence 44566666654 44444688899999999999998 5555444444455567778999999999774 33344444444
Q ss_pred HHH
Q 027592 158 ETF 160 (221)
Q Consensus 158 ~~f 160 (221)
..+
T Consensus 140 ~~l 142 (260)
T KOG3077|consen 140 QRL 142 (260)
T ss_pred HHH
Confidence 443
No 226
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.57 E-value=1.1e+02 Score=19.31 Aligned_cols=41 Identities=10% Similarity=0.360 Sum_probs=32.3
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 84 QACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (221)
Q Consensus 84 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~ 126 (221)
+.|.++-.+ |--|+.+-++..+...|.. +++..++.+++..
T Consensus 27 k~~~k~lk~-NPpine~~iR~M~~qmGqK-pSe~kI~Qvm~~i 67 (71)
T COG3763 27 KQMKKQLKD-NPPINEEMIRMMMAQMGQK-PSEKKINQVMRSI 67 (71)
T ss_pred HHHHHHHhh-CCCCCHHHHHHHHHHhCCC-chHHHHHHHHHHH
Confidence 344444333 5689999999999999999 9999999888765
No 227
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=36.52 E-value=68 Score=24.38 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=20.6
Q ss_pred CCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 165 ADHDGKITAEELFGVFTKLGDELCTLDDCRGMIAL 199 (221)
Q Consensus 165 ~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~ 199 (221)
.|.+|++..+++.+.+...+ ..++.+++.++...
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~-~~~t~~~l~~vV~~ 61 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAY-KWVTRELLEAVVES 61 (179)
T ss_pred cCCCCCEEHHHHHHHHHHcc-CCCCHHHHHHHHHc
Confidence 34566677666666665444 45666666666553
No 228
>PRK00523 hypothetical protein; Provisional
Probab=35.91 E-value=1.2e+02 Score=19.34 Aligned_cols=41 Identities=17% Similarity=0.407 Sum_probs=32.4
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 84 QACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (221)
Q Consensus 84 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~ 126 (221)
..|.++=. .|--|+.+-++..+...|.. +++..+..+.+..
T Consensus 28 k~~~k~l~-~NPpine~mir~M~~QMGqK-PSekki~Q~m~~m 68 (72)
T PRK00523 28 KMFKKQIR-ENPPITENMIRAMYMQMGRK-PSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHH-HCcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 33444433 25689999999999999999 9999999988776
No 229
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=35.83 E-value=92 Score=26.33 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=56.0
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhCCCCC---------CHHHHHHHHHhhcCCC-CCcccHHHHHHHHc--CCCCCCCCh
Q 027592 86 CKLLDRDNDGVVLRSELEALLIRLGADPP---------TQEEVKSMLSEVDREG-DGYIPLEALISRVG--NSSCEPACE 153 (221)
Q Consensus 86 F~~~D~d~~G~i~~~el~~~l~~~g~~~~---------~~~~~~~l~~~~d~~~-~g~I~~~ef~~~~~--~~~~~~~~~ 153 (221)
|..++.|+.+.++..+...++..+|++.. ...++..++......+ .|-| ...--.... +-.....+.
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVV-lK~~~~~~~~~Ky~t~~~~~ 209 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVV-LKDPDMRVPPLKYTTSYSNC 209 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEE-EeccccccCcceeecCCCCc
Confidence 33334455678899999999999876411 1256677776665443 2322 111110000 000144566
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHH
Q 027592 154 PELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDD 192 (221)
Q Consensus 154 ~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~ 192 (221)
..++.+|+.+=.-+-+++...=++.++.... ...++++
T Consensus 210 ~di~~~~~~~~d~~~~~~~~Ri~R~~~~~~E-~~~~~~~ 247 (342)
T cd07894 210 SDIRYAFRYPFDLGRDFFFSRIVREGFQSVE-LGESEEE 247 (342)
T ss_pred HHHHHHhhhccccCchHHHHHHHHHHHHHHH-hCCchHH
Confidence 7777777765444566666555666555544 4444333
No 230
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=35.25 E-value=1.1e+02 Score=18.75 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=23.3
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC
Q 027592 82 LVQACKLLDRDNDGVVLRSELEALLIRLGADP 113 (221)
Q Consensus 82 l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~ 113 (221)
+.++++.++.+....|+.+|...-+...|.+.
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~ 37 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKYGPNE 37 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhccccc
Confidence 34566677767777778888888888887763
No 231
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=35.18 E-value=54 Score=23.32 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=8.6
Q ss_pred HHhhcCCCCCcccHHHHHHHH
Q 027592 123 LSEVDREGDGYIPLEALISRV 143 (221)
Q Consensus 123 ~~~~d~~~~g~I~~~ef~~~~ 143 (221)
+..||.+++|.|..-.|...+
T Consensus 103 l~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 103 LNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHHH-TT--SEEEHHHHHHHH
T ss_pred HHHhCCCCCCeeehhHHHHHH
Confidence 444455555555555544433
No 232
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=34.70 E-value=3.5e+02 Score=24.47 Aligned_cols=56 Identities=11% Similarity=0.182 Sum_probs=25.1
Q ss_pred ccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHH
Q 027592 134 IPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCR 194 (221)
Q Consensus 134 I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~ 194 (221)
+++.+++..+. .......++.+.+|..+ -+|.++..++..+|..+.-...+.+|+.
T Consensus 198 ~~~~~~l~~~~--~~~~Lt~eea~~~~~~i---l~g~~~~~qi~AfL~alr~kget~eEl~ 253 (531)
T PRK09522 198 NTLQPILEKLY--QAQTLSQQESHQLFSAV---VRGELKPEQLAAALVSMKIRGEHPNEIA 253 (531)
T ss_pred CCHHHHHHHhh--cCCCCCHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 44444444442 22344455555555444 2344555555555554422234444443
No 233
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=34.58 E-value=51 Score=20.99 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=7.0
Q ss_pred CCCcCHHHHHHHHH
Q 027592 168 DGKITAEELFGVFT 181 (221)
Q Consensus 168 dG~I~~~e~~~~l~ 181 (221)
.|++..+||..++.
T Consensus 28 ~Gkv~~ee~n~~~e 41 (75)
T TIGR02675 28 SGKLRGEEINSLLE 41 (75)
T ss_pred cCcccHHHHHHHHH
Confidence 45555555555543
No 234
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.35 E-value=2e+02 Score=21.93 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh----cCCCCCcccHHHHHHHHcCCCC----
Q 027592 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV----DREGDGYIPLEALISRVGNSSC---- 148 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~----d~~~~g~I~~~ef~~~~~~~~~---- 148 (221)
...+.++++|..||.+.=-..+.+++..++..-+.- ....-|..++... +... + +|.+|+-.+.....
T Consensus 50 ~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~II-Rnr~KI~Avi~NA~~~l~i~~-e--sf~~ylW~fv~~~Pi~~~ 125 (179)
T TIGR00624 50 RKRENYRRAFSGFDIVKVARMTDADVERLLQDDGII-RNRGKIEATIANARAALQLEQ-N--DLVEFLWSFVNHQPQPRQ 125 (179)
T ss_pred HhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccch-hhHHHHHHHHHHHHHHHHHHH-c--cHHHHHHhccCCCCccCC
Confidence 357789999999999877777888998888766554 3333343333321 1111 1 78888855521111
Q ss_pred ------CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhC
Q 027592 149 ------EPACEPELKETFDFFDADHDGKITAEELFGVFTKLG 184 (221)
Q Consensus 149 ------~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~ 184 (221)
.+.....-..+.+.+-+.|-..+...-...+|+..|
T Consensus 126 ~~~~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G 167 (179)
T TIGR00624 126 RPTDSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATG 167 (179)
T ss_pred ccccccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHC
Confidence 123333455666666677777777777777777766
No 235
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=34.17 E-value=1.2e+02 Score=19.69 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=7.1
Q ss_pred HHhhhcCCCCCCcCH
Q 027592 159 TFDFFDADHDGKITA 173 (221)
Q Consensus 159 ~f~~~D~d~dG~I~~ 173 (221)
-|.+||.+..|.+|.
T Consensus 69 ~~~LF~~~~~~iltS 83 (87)
T PF14297_consen 69 EYGLFDIEEYGILTS 83 (87)
T ss_pred HhCCcccCCCcEEec
Confidence 344555554444443
No 236
>PRK08181 transposase; Validated
Probab=34.15 E-value=90 Score=25.34 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=50.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHH-----------HHHHhh
Q 027592 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPEL-----------KETFDF 162 (221)
Q Consensus 94 ~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l-----------~~~f~~ 162 (221)
..+|+.+++...++.+.+. -..+.+..+.... ..+.++|.||+..+............+ ...|..
T Consensus 4 ~~~~~~~~l~~~l~~LkL~-~~~~~~~~~~~~a---~~~~~~~~e~L~~ll~~E~~~R~~~~~~r~lk~A~~p~~~tle~ 79 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLP-TIKTLWPQFAEQA---DKEGWPAARFLAAIAEHELAERARRRIERHLAEAHLPPGKTLDS 79 (269)
T ss_pred CCcccHHHHHHHHHHcCch-HHHHHHHHHHHHH---hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHhh
Confidence 4588888999999999876 4445555555433 234589999999885322111111111 124677
Q ss_pred hcCCCCCCcCHHHHHHH
Q 027592 163 FDADHDGKITAEELFGV 179 (221)
Q Consensus 163 ~D~d~dG~I~~~e~~~~ 179 (221)
||.+..-.++...+...
T Consensus 80 fd~~~~~~~~~~~~~~L 96 (269)
T PRK08181 80 FDFEAVPMVSKAQVMAI 96 (269)
T ss_pred CCccCCCCCCHHHHHHH
Confidence 78777767777666554
No 237
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=33.97 E-value=1.1e+02 Score=19.90 Aligned_cols=80 Identities=25% Similarity=0.188 Sum_probs=36.6
Q ss_pred CCcccHHHHHHHHHHhCCCC----CCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCC
Q 027592 94 DGVVLRSELEALLIRLGADP----PTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDG 169 (221)
Q Consensus 94 ~G~i~~~el~~~l~~~g~~~----~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG 169 (221)
||.|+..|...+...+...+ .....+..++...-.. ......+...+...........-+..++.... -||
T Consensus 13 DG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia~--aDG 87 (104)
T cd07177 13 DGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE---AGDLAALAALLKELPDAELREALLAALWEVAL--ADG 87 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcc
Confidence 67888888877665553221 2233444444443221 12344444444211101122223334444444 357
Q ss_pred CcCHHHHHH
Q 027592 170 KITAEELFG 178 (221)
Q Consensus 170 ~I~~~e~~~ 178 (221)
.++..|..-
T Consensus 88 ~~~~~E~~~ 96 (104)
T cd07177 88 ELDPEERAL 96 (104)
T ss_pred CCCHHHHHH
Confidence 777666544
No 238
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=33.78 E-value=1.3e+02 Score=19.54 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=25.1
Q ss_pred CCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 027592 168 DGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 168 dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~ 218 (221)
+|.|+.++...+.. ...+.+....++.... ..|..-++-|+++|+
T Consensus 27 ~~Vit~e~~~~I~a----~~T~~~kar~Lld~l~--~kG~~A~~~F~~~L~ 71 (82)
T cd08330 27 KKVITQEQYSEVRA----EKTNQEKMRKLFSFVR--SWGASCKDIFYQILR 71 (82)
T ss_pred CCCCCHHHHHHHHc----CCCcHHHHHHHHHHHH--ccCHHHHHHHHHHHH
Confidence 45666666655554 3344555566666543 244556666666664
No 239
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=33.58 E-value=2.4e+02 Score=23.56 Aligned_cols=73 Identities=14% Similarity=0.263 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChH
Q 027592 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGA-----DPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEP 154 (221)
Q Consensus 80 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~-----~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~ 154 (221)
.-|+++....+.+++|.|+..=-..+|..++. +......+..+++.|+ .|-|..+.....+. ...+
T Consensus 222 RLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~---GgPVGl~tia~~lg------e~~~ 292 (332)
T COG2255 222 RLLRRVRDFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFG---GGPVGLDTIAAALG------EDRD 292 (332)
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhC---CCCccHHHHHHHhc------Cchh
Confidence 34666777777788888888877788877743 3222334455555553 35577888888774 4455
Q ss_pred HHHHHHh
Q 027592 155 ELKETFD 161 (221)
Q Consensus 155 ~l~~~f~ 161 (221)
.+..+++
T Consensus 293 TiEdv~E 299 (332)
T COG2255 293 TIEDVIE 299 (332)
T ss_pred HHHHHHh
Confidence 5555443
No 240
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=33.27 E-value=55 Score=28.74 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q 027592 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLG 110 (221)
Q Consensus 78 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g 110 (221)
+...+..+| .+-....+..+.+||...+....
T Consensus 287 ~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~ 318 (445)
T PF13608_consen 287 EEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVN 318 (445)
T ss_pred HHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcC
Confidence 445566666 55555567888899988888543
No 241
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=32.97 E-value=73 Score=18.83 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=20.7
Q ss_pred CCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 027592 167 HDGKITAEELFGVFTKLGDELCTLDDCRGMIA 198 (221)
Q Consensus 167 ~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~ 198 (221)
.+|.|+.+||..-+.... .-.+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~-~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAY-AARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHH-hcCcHHHHHHHHc
Confidence 578888888888777655 4455556655553
No 242
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=32.84 E-value=92 Score=21.58 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 173 AEELFGVFTKLGDELCTLDDCRGMIAL 199 (221)
Q Consensus 173 ~~e~~~~l~~~~~~~~~~~~~~~i~~~ 199 (221)
.+|++.++.... ..+++++++.|+..
T Consensus 81 ~dElrai~~~~~-~~~~~e~l~~ILd~ 106 (112)
T PRK14981 81 RDELRAIFAKER-YTLSPEELDEILDI 106 (112)
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHH
Confidence 344444444443 44555555555443
No 243
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.83 E-value=1.5e+02 Score=19.82 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (221)
Q Consensus 80 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~ 126 (221)
+.|...|..+-. .|...++..+.+.+| +++.+|..+-...
T Consensus 4 ~~l~~~f~~i~~----~V~~~~Wk~laR~LG---Lse~~I~~i~~~~ 43 (96)
T cd08315 4 ETLRRSFDHFIK----EVPFDSWNRLMRQLG---LSENEIDVAKANE 43 (96)
T ss_pred hHHHHHHHHHHH----HCCHHHHHHHHHHcC---CCHHHHHHHHHHC
Confidence 456777777643 577888999999998 5588887776553
No 244
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=32.82 E-value=72 Score=19.50 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=20.3
Q ss_pred CcCHHHHHHHHHHhCCCCCCHHHHHHHH
Q 027592 170 KITAEELFGVFTKLGDELCTLDDCRGMI 197 (221)
Q Consensus 170 ~I~~~e~~~~l~~~~~~~~~~~~~~~i~ 197 (221)
.|+.++|..+|+... ..++.+++..+-
T Consensus 29 ~it~~DF~~Al~~~k-pSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVK-PSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCG-GSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcC-CCCCHHHHHHHH
Confidence 478888888888887 888888877653
No 245
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=32.01 E-value=1.5e+02 Score=19.51 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=37.5
Q ss_pred cccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHH
Q 027592 133 YIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMI 197 (221)
Q Consensus 133 ~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~ 197 (221)
.|++.+++.+= ..........=..+.+.+ +=|+.+..+|...|..+| ++.+++.+++
T Consensus 30 ~it~~dL~~~G--L~g~~~s~~rR~~l~~~L---~iGy~N~KqllkrLN~f~---it~~e~~~al 86 (87)
T PF13331_consen 30 EITWEDLIELG--LIGGPDSKERREKLGEYL---GIGYGNAKQLLKRLNMFG---ITREEFEEAL 86 (87)
T ss_pred cCCHHHHHHCC--CCCCccHHHHHHHHHHHH---CCCCCCHHHHHHHHHHcC---CCHHHHHHHh
Confidence 48999887653 222223333333455666 448999999998888877 8888877664
No 246
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed
Probab=31.33 E-value=1e+02 Score=22.79 Aligned_cols=94 Identities=21% Similarity=0.222 Sum_probs=51.6
Q ss_pred CcccHHHHHHHHHHhC----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCC
Q 027592 95 GVVLRSELEALLIRLG----ADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGK 170 (221)
Q Consensus 95 G~i~~~el~~~l~~~g----~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~ 170 (221)
|.++.+.+..++..-| ..|++++.+..- -|.+++++|+..+............+...|++.-+ ..|+
T Consensus 56 ge~~~~tv~~Li~kRG~~~g~~~ltd~~i~e~--------~g~~~iedl~~~i~~~~~~fk~~~~~~~~FrL~pP-r~G~ 126 (154)
T PRK06049 56 GEIDADTLAELLRKRGRLEGNKKLTDEYVKEN--------TGYDSIEELAEALVEGEIKLKDLPGLKPVFRLHPP-RGGF 126 (154)
T ss_pred eeCchHHHHHHHHHhCcccCCCCCCHHHHHHh--------cCCccHHHHHHHHHhCCCCHHHhhcccCceecCCc-chhh
Confidence 4566666666666543 234666655552 26788999988886433333333345566766655 3444
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 171 ITAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 171 I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
- -.+..+..-|..+...+.|.++++.+
T Consensus 127 ~---~~k~~~~~gG~~G~r~~~In~Li~rM 153 (154)
T PRK06049 127 G---GIKRPFKEGGELGYRGEKINELLRRM 153 (154)
T ss_pred h---hcccccccCCCCCccHHHHHHHHHHh
Confidence 1 12222222233445667777777654
No 247
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=31.17 E-value=85 Score=18.31 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=4.5
Q ss_pred cccHHHHHHHH
Q 027592 133 YIPLEALISRV 143 (221)
Q Consensus 133 ~I~~~ef~~~~ 143 (221)
.|+..+|...+
T Consensus 10 ~itv~~~rd~l 20 (50)
T PF09107_consen 10 EITVAEFRDLL 20 (50)
T ss_dssp SBEHHHHHHHH
T ss_pred cCcHHHHHHHH
Confidence 34444444444
No 248
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.98 E-value=2.5e+02 Score=24.64 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 173 AEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 173 ~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
++++.-+|+.+.....++.+|+.++..+
T Consensus 442 FQ~~ilfLQnlPT~~W~d~eIellLseA 469 (484)
T KOG1092|consen 442 FQELILFLQNLPTHNWSDREIELLLSEA 469 (484)
T ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHHH
Confidence 4444555555544667888887776543
No 249
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=30.77 E-value=3.5e+02 Score=25.71 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHhhcCCC-CCcccHHHHHHHHcC-----------CCC-CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHH
Q 027592 114 PTQEEVKSMLSEVDREG-DGYIPLEALISRVGN-----------SSC-EPACEPELKETFDFFDADHDGKITAEELFGVF 180 (221)
Q Consensus 114 ~~~~~~~~l~~~~d~~~-~g~I~~~ef~~~~~~-----------~~~-~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l 180 (221)
++-..+..+|.+.+..+ +..++..+.+.++.. ... ..-..-.+...+++||...+|.|..-+|+-.+
T Consensus 417 v~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~ 496 (966)
T KOG4286|consen 417 LSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGI 496 (966)
T ss_pred ccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhH
Confidence 34455667777766543 333444444333321 111 11122245667899999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHH
Q 027592 181 TKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 217 (221)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l 217 (221)
..+. ....++.+..+|......+ ..++...|-.+|
T Consensus 497 i~lc-k~~leek~~ylF~~vA~~~-sq~~q~~l~lLL 531 (966)
T KOG4286|consen 497 ISLC-KAHLEDKYRYLFKQVASST-SQCDQRRLGLLL 531 (966)
T ss_pred HHHh-cchhHHHHHHHHHHHcCch-hhHHHHHHHHHH
Confidence 8887 6666667779999884443 344455554444
No 250
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=30.64 E-value=60 Score=21.75 Aligned_cols=81 Identities=22% Similarity=0.170 Sum_probs=41.6
Q ss_pred CCcccHHHHHHHHHHhC----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCC
Q 027592 94 DGVVLRSELEALLIRLG----ADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDG 169 (221)
Q Consensus 94 ~G~i~~~el~~~l~~~g----~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG 169 (221)
||.++..|...+.+.+. +.+.....+..+++..-..- ...+..++...+...........-+..++..... ||
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~a--DG 92 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAA--DG 92 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc--cC
Confidence 67888888877777663 22234455566665543220 0244566666664222222222233344455544 56
Q ss_pred CcCHHHHH
Q 027592 170 KITAEELF 177 (221)
Q Consensus 170 ~I~~~e~~ 177 (221)
.++..|-.
T Consensus 93 ~~~~~E~~ 100 (111)
T cd07176 93 EVDPEERA 100 (111)
T ss_pred CCCHHHHH
Confidence 77776644
No 251
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=30.62 E-value=1.9e+02 Score=20.17 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=34.4
Q ss_pred HHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 158 ETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 158 ~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
.+|-+.-..|+..+|.+++..+|...| ..+....+..+++.+
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaG-vevd~~~~~~f~~~L 46 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVG-ADADDDRIELLLSEV 46 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcC-CcccHHHHHHHHHHH
Confidence 345555556777899999999999999 888888888888887
No 252
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.51 E-value=71 Score=29.56 Aligned_cols=66 Identities=23% Similarity=0.337 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCC-------CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHH
Q 027592 116 QEEVKSMLSEVDREGDGYIPLEALISRVGNSSC-------EPACEPELKETFDFFDADHDGKITAEELFGVFTK 182 (221)
Q Consensus 116 ~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~-------~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~ 182 (221)
+..++-+|..+|. .+|.++-+++..++..... .....+....++...|.++.|++..+++..++..
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 4445555555544 4555555555444322111 1222333344566667777777777776666653
No 253
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=29.98 E-value=57 Score=17.06 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=8.1
Q ss_pred CcceeHHHHHHHHH
Q 027592 205 DGFVCFEDFSRMME 218 (221)
Q Consensus 205 ~g~i~~~eF~~~l~ 218 (221)
.|.|+++|++.+..
T Consensus 2 ~~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 2 SGTISKEEYLDMAS 15 (33)
T ss_pred CceecHHHHHHHHH
Confidence 35566666666554
No 254
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=29.86 E-value=1.5e+02 Score=25.45 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=58.2
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhCCCC------CCHH----HHHHHHHhhcCCCCCcccHHHHHHHHcCCC---CCCCC
Q 027592 86 CKLLDRDNDGVVLRSELEALLIRLGADP------PTQE----EVKSMLSEVDREGDGYIPLEALISRVGNSS---CEPAC 152 (221)
Q Consensus 86 F~~~D~d~~G~i~~~el~~~l~~~g~~~------~~~~----~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~---~~~~~ 152 (221)
|..+|.+.+..++.+|-..++..+|+.+ .+.. .+..++..++..+---|-+.+-.... ... ....+
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~~-~~~KYtT~~~n 241 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMRV-KPLKYTTSYAN 241 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccccC-CcceeecCccC
Confidence 4444555688999999999999998763 1222 44566666665543224332221110 011 14566
Q ss_pred hHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHH
Q 027592 153 EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDD 192 (221)
Q Consensus 153 ~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~ 192 (221)
...++.+|+.+=.-+-+++...=++..++... ...++++
T Consensus 242 ~~Di~~~~~~~~d~g~df~~sRi~Re~f~~~E-~~~~~~e 280 (374)
T TIGR01209 242 INDIKYAARYFFELGRDFFFSRILREAFQSYE-FGEKGEE 280 (374)
T ss_pred hHHHHHHHhhccccCchHHHHHHHHHHHHHHH-hCCchHH
Confidence 66777777665444555655555555555443 4444444
No 255
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=29.67 E-value=1.5e+02 Score=18.57 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=26.0
Q ss_pred CCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 168 DGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 168 dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
.|.|+.+|...+... ....+.+..++..+...| .=.|..|+..|..
T Consensus 25 ~~vlt~~e~~~i~~~----~~~~~k~~~Lld~l~~kg--~~af~~F~~~L~~ 70 (80)
T cd01671 25 DGVLTEEEYEKIRSE----STRQDKARKLLDILPRKG--PKAFQSFLQALQE 70 (80)
T ss_pred cCCCCHHHHHHHHcC----CChHHHHHHHHHHHHhcC--hHHHHHHHHHHHh
Confidence 467777766665432 224555666666654433 3366677776654
No 256
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=29.44 E-value=1.3e+02 Score=19.39 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCC-CCcceeHHHHHHHH
Q 027592 172 TAEELFGVFTKLGDELCTLDDCRGMIALVDKN-GDGFVCFEDFSRMM 217 (221)
Q Consensus 172 ~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~-~~g~i~~~eF~~~l 217 (221)
+.+++...|. | ...+.+.+...+..++.+ -=+.++.+||++++
T Consensus 43 ~i~~le~~L~--G-~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALI--G-CPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHT--T-CBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHH--h-cCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 3566666663 4 678888888888887654 34578888888875
No 257
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=29.43 E-value=1.5e+02 Score=20.08 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=42.1
Q ss_pred ccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 134 IPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 134 I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
|.-.+|..+++ ......+.+++..+-..+-.++...++..++...+...-...-++++++.+-..+
T Consensus 20 vP~~Dy~PLlA-LL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 20 VPPTDYVPLLA-LLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRARL 85 (96)
T ss_dssp B-HHHHHHHHH-HHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHH
T ss_pred CCCCccHHHHH-HhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 66667776665 3344477777777777776666666788888888887754666777777766554
No 258
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=29.29 E-value=1.9e+02 Score=19.82 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 97 VLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 97 i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
|+.+++..+|...|.. .....+..+++.+.. .+.++++....
T Consensus 17 ~ta~~I~~IL~aaGve-Ve~~~~~~~~~aLaG-----k~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGAE-IEPERVKLFLSALNG-----KNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCCC-cCHHHHHHHHHHHcC-----CCHHHHHHHHH
Confidence 9999999999999998 999999999988732 67888887664
No 259
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=29.08 E-value=2e+02 Score=21.19 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 027592 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRL 109 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~ 109 (221)
.++..+......+|.++.+++++.||+.++-.+
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 467778888888998888889999998876544
No 260
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.04 E-value=1.8e+02 Score=19.35 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=37.2
Q ss_pred CCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 167 HDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 167 ~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
..|.+|.++...+....+ ..-+...+.+++..+- . |.=-|..|+.+|+.
T Consensus 30 ~~~ilT~~d~e~I~aa~~-~~g~~~~ar~LL~~L~-r--g~~aF~~Fl~aLre 78 (88)
T cd08819 30 EQGLLTEEDRNRIEAATE-NHGNESGARELLKRIV-Q--KEGWFSKFLQALRE 78 (88)
T ss_pred hcCCCCHHHHHHHHHhcc-ccCcHHHHHHHHHHhc-c--CCcHHHHHHHHHHH
Confidence 456888888888777655 5667888889988885 4 44478999998875
No 261
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=28.91 E-value=56 Score=22.26 Aligned_cols=13 Identities=8% Similarity=-0.130 Sum_probs=6.6
Q ss_pred eeHHHHHHHHHhC
Q 027592 208 VCFEDFSRMMELQ 220 (221)
Q Consensus 208 i~~~eF~~~l~~~ 220 (221)
++-+|.+.+|..+
T Consensus 72 ~s~~e~~~~l~~~ 84 (105)
T cd03035 72 LDAAKAIALMLEH 84 (105)
T ss_pred CCHHHHHHHHHhC
Confidence 4555555555443
No 262
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=28.62 E-value=2.4e+02 Score=21.14 Aligned_cols=55 Identities=22% Similarity=0.394 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCC
Q 027592 98 LRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHD 168 (221)
Q Consensus 98 ~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~d 168 (221)
+..+...-|.+.|.+ ....+...++..+-.++.|.| |..| ..+..++..||.|||
T Consensus 3 ns~~~~~~lka~gi~-tnskqyka~~~~mm~~~~~~~-y~~~--------------~~iknlm~~yd~dgd 57 (186)
T PF12995_consen 3 NSSSVQEQLKAAGIN-TNSKQYKAVMSEMMSAGEGAM-YTNI--------------QGIKNLMSQYDKDGD 57 (186)
T ss_pred ChHHHHHHHHhcCCC-cChHHHHHHHHHHhcCCCCce-eehH--------------HHHHHHHHhcCCCCc
Confidence 445566667777877 666777777777666666543 3332 235666777776653
No 263
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=28.56 E-value=1.4e+02 Score=21.10 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCCHHHHHHHHHhhcCC
Q 027592 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRL-GADPPTQEEVKSMLSEVDRE 129 (221)
Q Consensus 78 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~l~~~~d~~ 129 (221)
-...+..+|++|.. +.|+.+.+..++.+. |.. ++..++..+..++-.|
T Consensus 35 f~~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~-LT~~Qi~Yl~~~~~~n 83 (122)
T PF06648_consen 35 FLDKLIKILKMFLN---DEIDVEDMYNLFGAVDGLK-LTRSQIDYLYNRVYNN 83 (122)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHhcccHhh-cCHHHHHHHHHHHHcc
Confidence 35668888888875 489999999999877 577 8888888888777443
No 264
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=28.43 E-value=1.8e+02 Score=19.17 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=11.9
Q ss_pred CcccHHHHHHHHcCCCCCCCChHHHHHHHhh
Q 027592 132 GYIPLEALISRVGNSSCEPACEPELKETFDF 162 (221)
Q Consensus 132 g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~ 162 (221)
|.|+-+++-...+ .....+.++.++..
T Consensus 28 ~~it~E~y~~V~a----~~T~qdkmRkLld~ 54 (85)
T cd08324 28 DYFSTEDAEIVCA----CPTQPDKVRKILDL 54 (85)
T ss_pred CCccHHHHHHHHh----CCCCHHHHHHHHHH
Confidence 4444444444431 33444444444444
No 265
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=28.25 E-value=2.8e+02 Score=21.29 Aligned_cols=100 Identities=18% Similarity=0.068 Sum_probs=58.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHH-
Q 027592 82 LVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETF- 160 (221)
Q Consensus 82 l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f- 160 (221)
|+.+.... .-||+|+.+|-..+...+.......++-..+...+. .-++.+++...+ .+.+...++|
T Consensus 83 lrAMIaAA--kADG~ID~~Er~~I~~~l~~~g~d~e~~~~l~~eL~----~P~d~~~la~~v-------~~~e~A~evY~ 149 (188)
T PF04391_consen 83 LRAMIAAA--KADGHIDEEERQRIEGALQELGLDAEERAWLQAELA----APLDPDALAAAV-------TDPEQAAEVYL 149 (188)
T ss_pred HHHHHHHH--HcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHh----CCCCHHHHHHhC-------CCHHHHHHHHH
Confidence 44444433 357999999999997776543244554444455553 238888888777 5555555555
Q ss_pred ---hhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 161 ---DFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIAL 199 (221)
Q Consensus 161 ---~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~ 199 (221)
-.+|.| ......=+..+-..++ +++..+..|=..
T Consensus 150 aS~laid~d--~~~Er~YL~~LA~aL~---L~~~lv~~le~~ 186 (188)
T PF04391_consen 150 ASLLAIDVD--TFAERAYLDELAQALG---LDPDLVAQLEQQ 186 (188)
T ss_pred HHHHHhCCC--CHHHHHHHHHHHHHhC---cCHHHHHHHHHH
Confidence 345544 3333332333334445 777777666443
No 266
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=27.83 E-value=2.3e+02 Score=20.27 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=31.0
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCC
Q 027592 154 PELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNG 204 (221)
Q Consensus 154 ~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~ 204 (221)
+.+..+-+.+....-..-..+.=..+|+.-| ++++||+++|.......
T Consensus 4 ~li~~A~~FL~~p~V~~sp~~~k~~FL~sKG---Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 4 DLIEQAVKFLQDPKVRNSPLEKKIAFLESKG---LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT-----HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHhCCcccccCCHHHHHHHHHcCC---CCHHHHHHHHHhcCCcc
Confidence 3445555555555556667777888888866 99999999999886544
No 267
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=27.61 E-value=1e+02 Score=21.54 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=26.5
Q ss_pred hhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 027592 161 DFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 218 (221)
Q Consensus 161 ~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~ 218 (221)
+.+...+...|+.+...+++.-.. .+...+..+|.++-=-+-++||+.+++
T Consensus 67 ~Fl~~~~~k~IskD~W~~~l~F~~-------~~~~dls~Yde~~AWP~liDeFVe~~r 117 (117)
T PF03556_consen 67 EFLEEKYKKAISKDTWNQFLDFFK-------TVDEDLSNYDEEGAWPSLIDEFVEWLR 117 (117)
T ss_dssp HHHHHCT-SEEEHHHHHHHHHHHH-------H-HCCHCC--TTSSS-HHHHHHHHHHH
T ss_pred HHHHHcCCcCcChhHHHHHHHHHH-------hcCccccCCCCCCCCcHHHHHHHHHhC
Confidence 333333555677776666665332 223445556655544578888888764
No 268
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=27.36 E-value=1.5e+02 Score=24.96 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=38.2
Q ss_pred HhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHH
Q 027592 108 RLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVF 180 (221)
Q Consensus 108 ~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l 180 (221)
++|.. ....++..+++ .|.|+-+|=+..+.. .......+.+..+++.++ ||.+||..++
T Consensus 284 KfG~~-~~~~~~s~~IR------~G~itReeal~~v~~-~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 284 KFGFG-RATDHASIDIR------SGRITREEAIELVKE-YDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred hcCCC-cCchHHHHHHH------cCCCCHHHHHHHHHH-hcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 35776 55555555553 477888888888753 223344567778888887 5677777664
No 269
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=27.06 E-value=2.6e+02 Score=20.58 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCC-----
Q 027592 75 SLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCE----- 149 (221)
Q Consensus 75 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~----- 149 (221)
+......|..++.... .+|.+...++...| + .+...+..+++.+. ..|.|.|..+..+.......
T Consensus 5 s~~~edYL~~Iy~l~~--~~~~~~~~diA~~L---~---Vsp~sVt~ml~rL~--~~GlV~~~~y~gi~LT~~G~~~a~~ 74 (154)
T COG1321 5 SETEEDYLETIYELLE--EKGFARTKDIAERL---K---VSPPSVTEMLKRLE--RLGLVEYEPYGGVTLTEKGREKAKE 74 (154)
T ss_pred chHHHHHHHHHHHHHh--ccCcccHHHHHHHh---C---CCcHHHHHHHHHHH--HCCCeEEecCCCeEEChhhHHHHHH
Confidence 4455666777776665 67899999998888 4 44566666776663 45667776655444210000
Q ss_pred CCChHHHHHHH-h-hhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 027592 150 PACEPELKETF-D-FFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVD 201 (221)
Q Consensus 150 ~~~~~~l~~~f-~-~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d 201 (221)
....-.+.+.| . .++ |+.++...-...+. ..++++.++.|.+.++
T Consensus 75 ~~r~hrlle~fL~~~lg------~~~~~~~~ea~~le-h~~s~~~~~rl~~~l~ 121 (154)
T COG1321 75 LLRKHRLLERFLVDVLG------LDWEEAHEEAEGLE-HALSDETAERLDELLG 121 (154)
T ss_pred HHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHh-hcCCHHHHHHHHHHhC
Confidence 00111111222 1 232 44555555555555 6788888888887775
No 270
>PRK01844 hypothetical protein; Provisional
Probab=26.73 E-value=1.8e+02 Score=18.55 Aligned_cols=40 Identities=15% Similarity=0.345 Sum_probs=31.7
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 85 ACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (221)
Q Consensus 85 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~ 126 (221)
.|.++=. .|--|+.+-++..+...|.. +++..+..+.+..
T Consensus 28 ~~~k~lk-~NPpine~mir~Mm~QMGqk-PSekki~Q~m~~m 67 (72)
T PRK01844 28 YMMNYLQ-KNPPINEQMLKMMMMQMGQK-PSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHH-HCCCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 3444433 25589999999999999999 9999999888776
No 271
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=26.59 E-value=2e+02 Score=25.63 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=12.0
Q ss_pred HHHhhcCCCCCcccHHHHHHHHc
Q 027592 122 MLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 122 l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
+|..+-....+.|.+-.|...+.
T Consensus 91 LFyLiaegq~ekipihKFiTALk 113 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALK 113 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHH
Confidence 33444333346666666666663
No 272
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=26.32 E-value=3.5e+02 Score=24.40 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=30.2
Q ss_pred ccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 027592 134 IPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIA 198 (221)
Q Consensus 134 I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~ 198 (221)
+++.+++..+. .......+++..+|..+ -+|.++..++..+|..+.-...+.+|+.-+.+
T Consensus 193 ~~~~~~i~~l~--~g~~Lt~~ea~~~~~~i---l~g~~~~~q~~AfL~alr~kget~~El~g~~~ 252 (534)
T PRK14607 193 IDIKSYLKKLV--EGEDLSFEEAEDVMEDI---TDGNATDAQIAGFLTALRMKGETADELAGFAS 252 (534)
T ss_pred CCHHHHHHHhc--cCCCCCHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44555555442 22344555555555554 24556666666665554323345555544433
No 273
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=26.21 E-value=35 Score=31.25 Aligned_cols=62 Identities=21% Similarity=0.396 Sum_probs=47.5
Q ss_pred HHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHH---------HHHHHHhhcCCCC----------------------
Q 027592 157 KETFDFFDADHDGKITAEELFGVFTKLGDELCTLDD---------CRGMIALVDKNGD---------------------- 205 (221)
Q Consensus 157 ~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~---------~~~i~~~~d~~~~---------------------- 205 (221)
..++..+|.+-++.++..+|......++ ..+-... -..++..+|.+++
T Consensus 440 ~~~~s~~d~~~~fk~sf~~~~~l~~~F~-~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s 518 (975)
T KOG2419|consen 440 KRILSIVDYEEDFKLSFSEFSDLSFAFG-NVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKS 518 (975)
T ss_pred hhcccccccccCceEeeehHHHHHHHHH-HHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccc
Confidence 3456788999999999999998888776 3333322 4457777888888
Q ss_pred -cceeHHHHHHHHHh
Q 027592 206 -GFVCFEDFSRMMEL 219 (221)
Q Consensus 206 -g~i~~~eF~~~l~~ 219 (221)
|.|+.+|.+.++.+
T Consensus 519 ~~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 519 FGVVTVDELVALLAL 533 (975)
T ss_pred cCeeEHHHHHHHHHH
Confidence 99999999998873
No 274
>COG5562 Phage envelope protein [General function prediction only]
Probab=26.03 E-value=55 Score=23.57 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 188 CTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 188 ~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
.+...+....+ .+..|+.+|+||+.-+..
T Consensus 72 ~n~~~i~~al~---~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 72 FNTTLIKTALR---RHQSGQTTFEEFCSALAE 100 (137)
T ss_pred cCHHHHHHHHH---HHhcCCccHHHHHHHHHh
Confidence 34444444444 457788899999988764
No 275
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=25.84 E-value=1.6e+02 Score=20.46 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=6.6
Q ss_pred CCCCcCHHHHHHHHH
Q 027592 167 HDGKITAEELFGVFT 181 (221)
Q Consensus 167 ~dG~I~~~e~~~~l~ 181 (221)
.+|.|+......+|+
T Consensus 82 r~g~i~l~~~l~~L~ 96 (117)
T PF08349_consen 82 REGKIPLSVPLTLLK 96 (117)
T ss_pred HcCCccHHHHHHHHH
Confidence 444444444444443
No 276
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=25.61 E-value=4.7e+02 Score=23.09 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=68.0
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCC------------------
Q 027592 69 DMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREG------------------ 130 (221)
Q Consensus 69 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~------------------ 130 (221)
+..+.|...+.+.=-+++..+-.+ .|.++|=...|..+-.+-+..+.+...|..|-...
T Consensus 173 dPr~iL~aQ~~~aRgeaiA~MKA~---GveYeERMe~LeevtyPkPL~e~L~~af~~y~~~hPWv~~~~l~PKSVvRdM~ 249 (461)
T PF12029_consen 173 DPRQILRAQQRKARGEAIAEMKAD---GVEYEERMERLEEVTYPKPLAELLEAAFETYRRGHPWVGDFELSPKSVVRDMY 249 (461)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHhhCCCCCchHHHHHHHHHHHHhcCCcccCCCCCcchHHHHHH
Confidence 333333333333344455555544 57888888888888765455566666666663221
Q ss_pred CCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhC
Q 027592 131 DGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLG 184 (221)
Q Consensus 131 ~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~ 184 (221)
...++|.+|+..+......+.-..++..+|+.+...==-..--+|+..++.-+|
T Consensus 250 E~amtF~dyV~~YgLaRSEGvlLRYLsDAyraL~qtVP~~~rteel~dii~WLg 303 (461)
T PF12029_consen 250 ERAMTFSDYVSRYGLARSEGVLLRYLSDAYRALRQTVPEDARTEELEDIIEWLG 303 (461)
T ss_pred HhhCCHHHHHHHhCcchhhhHHHHHHHHHHHHHhhhCChhhcCchHHHHHHHHH
Confidence 124899999999964444666677788888887543222222356666666555
No 277
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=25.60 E-value=2.4e+02 Score=19.68 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=39.1
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 027592 86 CKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALIS 141 (221)
Q Consensus 86 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~ 141 (221)
|-..-.-++..++.+++..+|...|.. .....+..++..+.. .++.|++.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaGve-vd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVGAD-ADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCc-ccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 334444567789999999999999998 888888888888832 66788775
No 278
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=25.42 E-value=2.1e+02 Score=18.90 Aligned_cols=69 Identities=10% Similarity=-0.028 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhC
Q 027592 114 PTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLG 184 (221)
Q Consensus 114 ~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~ 184 (221)
+++.+...+++..-.++ --|.+.+|...+..... .....+...+=..+|...+|+|+.=||--+.+-.+
T Consensus 4 ITK~eA~~FW~~~Fg~r-~IVPW~~F~~~L~~~h~-~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFGKR-TIVPWSEFRQALQKVHP-ISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp -SSHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred eccHHHHHHHHHHCCCC-eEeeHHHHHHHHHHhcC-CCchHHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 45666777766553333 45888888888853322 22223444444567888888888888876665544
No 279
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=25.40 E-value=1.7e+02 Score=17.81 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 027592 77 DMNYELVQACKLLDRDNDGVVLRSELEALL 106 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l 106 (221)
-+.+++.+.+..|..++...|+.+|+..-+
T Consensus 31 ~~~~el~~R~~~~~~g~~~~i~~eev~~~i 60 (63)
T TIGR02574 31 AQKAELDRRLADYKADPSKASPWEEVRARI 60 (63)
T ss_pred HHHHHHHHHHHHHHcCCcCCCCHHHHHHHH
Confidence 444555555555555555555555554433
No 280
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=25.30 E-value=1.6e+02 Score=20.48 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 027592 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD 127 (221)
Q Consensus 81 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d 127 (221)
.+..++..+. +....++.+|+..++. .+...+..+++.+.
T Consensus 5 ~y~~L~~~~~-~~~~~vtl~elA~~l~------cS~Rn~r~lLkkm~ 44 (115)
T PF12793_consen 5 QYQRLWQHYG-GQPVEVTLDELAELLF------CSRRNARTLLKKMQ 44 (115)
T ss_pred HHHHHHHHcC-CCCcceeHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 4555666665 5677899999999884 67788888888873
No 281
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=25.08 E-value=1.6e+02 Score=24.80 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=52.2
Q ss_pred CCCCCCHHHHHHHHHhhc--CCCCCcccHHHHHHHHcCCCCCCCChHHHHHHH-----hhhcCCCCCCcCHHHHHHHHHH
Q 027592 110 GADPPTQEEVKSMLSEVD--REGDGYIPLEALISRVGNSSCEPACEPELKETF-----DFFDADHDGKITAEELFGVFTK 182 (221)
Q Consensus 110 g~~~~~~~~~~~l~~~~d--~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f-----~~~D~d~dG~I~~~e~~~~l~~ 182 (221)
... +..+++..++..+- .|..-.+-=+||...+. .-..+.+..| +.+...=+|.|=+.|+.+-++.
T Consensus 35 d~s-~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~------~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~ 107 (357)
T PLN02508 35 NKN-LDMAEFEALLQEFKTDYNQTHFVRNEEFKAAAD------KIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKK 107 (357)
T ss_pred CCc-hhHHHHHHHHHHHHhCccccccccChhhccchh------hCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccc
Confidence 455 66778888888774 44445566666666552 1234445544 4456777888888887776643
Q ss_pred hCCCCCCHHHHHHHHHhhcCCC
Q 027592 183 LGDELCTLDDCRGMIALVDKNG 204 (221)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~d~~~ 204 (221)
- ..++.++|..+-.|.
T Consensus 108 ~------nP~lae~F~lMaRDE 123 (357)
T PLN02508 108 T------NPVVAEIFTLMSRDE 123 (357)
T ss_pred C------ChHHHHHHHHhCchh
Confidence 2 367888888886664
No 282
>PRK03968 DNA primase large subunit; Validated
Probab=25.03 E-value=2.1e+02 Score=24.49 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=44.9
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCc
Q 027592 92 DNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKI 171 (221)
Q Consensus 92 d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I 171 (221)
.+.+.|...++..+.+..+.. +..+++.++...+ .|.|.+|+.++... .+=+.+=.+|.=+|
T Consensus 117 ~~~~e~p~~d~~~l~~~~~~e-l~~e~~~~~~~~y------~i~~~df~~l~gs~-----------sLt~~iL~nG~VYL 178 (399)
T PRK03968 117 VNAIEIPEKDRKILERVRGRE-LPPEELEDLLPEY------KIKWKDLLDLIGSG-----------SLTDLYIRNGRVYL 178 (399)
T ss_pred cccccccchhhhhhhhhcccc-cCHHHHHHHhhhc------cccHHHHHHhcCCc-----------chhhhhhcCcEEEe
Confidence 345666777777777777776 7788888777654 48888888876311 11122223445556
Q ss_pred CHHHHHHHHHH
Q 027592 172 TAEELFGVFTK 182 (221)
Q Consensus 172 ~~~e~~~~l~~ 182 (221)
+.++|..++..
T Consensus 179 dkee~iki~~e 189 (399)
T PRK03968 179 RREEFLKLWSK 189 (399)
T ss_pred cHHHHHHHHHH
Confidence 66666555553
No 283
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=24.66 E-value=3.8e+02 Score=22.53 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHhh
Q 027592 114 PTQEEVKSMLSEV 126 (221)
Q Consensus 114 ~~~~~~~~l~~~~ 126 (221)
++.++...++..+
T Consensus 16 Lt~~Ea~~~~~~i 28 (339)
T PRK00188 16 LSEEEAEELMDAI 28 (339)
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 284
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=24.62 E-value=2.3e+02 Score=21.26 Aligned_cols=30 Identities=17% Similarity=-0.022 Sum_probs=19.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 93 NDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (221)
Q Consensus 93 ~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 125 (221)
.-|+|+.+-+..+...+|.. ..++..+...
T Consensus 48 ~~GyIp~e~~~~iA~~l~v~---~a~V~gVatF 77 (169)
T PRK07571 48 LFGYLERDLLLYVARQLKLP---LSRVYGVATF 77 (169)
T ss_pred HcCCCCHHHHHHHHHHhCcC---HHHHHHHHHH
Confidence 45788888888888887754 4444444333
No 285
>PRK09071 hypothetical protein; Validated
Probab=24.38 E-value=4.2e+02 Score=22.16 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=19.8
Q ss_pred CCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHH
Q 027592 150 PACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRG 195 (221)
Q Consensus 150 ~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~ 195 (221)
....++...+|..+= +|.++..++..+|..+.-...+.+|+.-
T Consensus 20 ~Lt~eEa~~~~~~il---~g~~~~~q~aAfL~alr~kgeT~eEi~g 62 (323)
T PRK09071 20 SLTREEARQAMGMIL---DGEVEDDQLGAFLMLLRVKEETAEELAG 62 (323)
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 344444444444431 3455555555555544223344454433
No 286
>TIGR02395 rpoN_sigma RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations
Probab=24.11 E-value=4.9e+02 Score=22.79 Aligned_cols=64 Identities=20% Similarity=0.153 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHHhCCCCCCHHHH---HHHHHhhcCCCCCcccHHHHHHHHc
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVL--RSELEALLIRLGADPPTQEEV---KSMLSEVDREGDGYIPLEALISRVG 144 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~--~~el~~~l~~~g~~~~~~~~~---~~l~~~~d~~~~g~I~~~ef~~~~~ 144 (221)
.+++.+..-...+...+|. +|++. .+++...+ | .+..++ ..++..+|.-|=|.=+..|.+.+=.
T Consensus 90 ~~~~~~~~ia~~iI~~LD~--~GyL~~~~~eia~~l---~---~~~~~ve~~l~~iq~leP~GIgAr~L~EcLllQl 158 (429)
T TIGR02395 90 LFTERDRKIALYIIDNLDE--DGYLEIDLEEIADEL---E---VSEEEVEKVLELIQRLDPAGVGARDLQECLLLQL 158 (429)
T ss_pred CCCHHHHHHHHHHHHhCCC--CCCCCCCHHHHHHHc---C---CCHHHHHHHHHHHhcCCCCccCcCCHHHHHHHHH
Confidence 3565666666666666665 56665 56665554 5 445544 4566777888888888888876643
No 287
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=24.01 E-value=2.8e+02 Score=20.16 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 027592 172 TAEELFGVFTKLGDELCTLDDCRGMIALVD 201 (221)
Q Consensus 172 ~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d 201 (221)
|.++.+.+..... ..++++++..++..+|
T Consensus 28 T~eDV~~~a~gme-~~lTd~E~~aVL~~I~ 56 (139)
T PF07128_consen 28 TREDVRALADGME-YNLTDDEARAVLARIG 56 (139)
T ss_pred cHHHHHHHHhcCC-CCCCHHHHHHHHHHHh
Confidence 3444444444333 4445555555554443
No 288
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=23.91 E-value=3.7e+02 Score=22.76 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=12.2
Q ss_pred ccCCHHHHHHHHHHHHHhCC
Q 027592 72 ADISLDMNYELVQACKLLDR 91 (221)
Q Consensus 72 ~~l~~~~~~~l~~~F~~~D~ 91 (221)
..|++++..++.+.+..+..
T Consensus 170 p~L~~~~~~~v~~sy~~~~~ 189 (341)
T PF12825_consen 170 PKLSPEQLQRVLESYKAWKN 189 (341)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 44555677777766665543
No 289
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=23.83 E-value=1.4e+02 Score=26.51 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=39.6
Q ss_pred cccHHHHHHHHcCCCC--CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhC
Q 027592 133 YIPLEALISRVGNSSC--EPACEPELKETFDFFDADHDGKITAEELFGVFTKLG 184 (221)
Q Consensus 133 ~I~~~ef~~~~~~~~~--~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~ 184 (221)
+.+..||=.++...+. .......+..+|+..|.+|=-.|+..+|+.+|..++
T Consensus 105 RaTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~ 158 (502)
T PF05872_consen 105 RATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVS 158 (502)
T ss_pred EeeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH
Confidence 5677888776654333 444555677899999999999999999999998775
No 290
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=23.71 E-value=1.5e+02 Score=16.61 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (221)
Q Consensus 73 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 125 (221)
..|+++.+.|.+++..+..+ .+..+...++.. -+..+|..-+..
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~--------~W~~Ia~~~~~~-Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKD--------NWKKIAKRMPGG-RTAKQCRSRYQN 46 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTT--------HHHHHHHHHSSS-STHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc--------HHHHHHHHcCCC-CCHHHHHHHHHh
Confidence 35678889999999998765 466666666644 777777766554
No 291
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=23.33 E-value=1.7e+02 Score=19.21 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=17.5
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 171 ITAEELFGVFTKLGDELCTLDDCRGMIAL 199 (221)
Q Consensus 171 I~~~e~~~~l~~~~~~~~~~~~~~~i~~~ 199 (221)
|+.+++.++..-.. ..+++++++.+...
T Consensus 1 i~~~~v~~lA~La~-L~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKLAR-LELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 45667776666555 66777776554433
No 292
>PRK10945 gene expression modulator; Provisional
Probab=23.13 E-value=1.9e+02 Score=18.36 Aligned_cols=22 Identities=18% Similarity=-0.043 Sum_probs=9.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH
Q 027592 176 LFGVFTKLGDELCTLDDCRGMIA 198 (221)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~i~~ 198 (221)
+..++..+. ..+++.++..+..
T Consensus 24 LEkvie~~~-~~L~~~E~~~f~~ 45 (72)
T PRK10945 24 LERVIEKNK-YELSDDELAVFYS 45 (72)
T ss_pred HHHHHHHhh-ccCCHHHHHHHHH
Confidence 333443333 4444444444333
No 293
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=22.46 E-value=2.5e+02 Score=18.77 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=21.5
Q ss_pred HHHHhhhcCCCCCCcCHHHHHHHHHHhC
Q 027592 157 KETFDFFDADHDGKITAEELFGVFTKLG 184 (221)
Q Consensus 157 ~~~f~~~D~d~dG~I~~~e~~~~l~~~~ 184 (221)
..+-......|.-+|+.+++...+..++
T Consensus 58 ~~A~~~A~ha~RKTV~~~DI~la~~~~~ 85 (91)
T COG2036 58 EDAVELAEHAKRKTVKAEDIKLALKRLG 85 (91)
T ss_pred HHHHHHHHHcCCCeecHHHHHHHHHHhc
Confidence 4455666777888899999988888776
No 294
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.42 E-value=3e+02 Score=19.78 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=51.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCC---cccHHHHHHHHcCCCC----------------CCCChHHHHHHHhh
Q 027592 102 LEALLIRLGADPPTQEEVKSMLSEVDREGDG---YIPLEALISRVGNSSC----------------EPACEPELKETFDF 162 (221)
Q Consensus 102 l~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g---~I~~~ef~~~~~~~~~----------------~~~~~~~l~~~f~~ 162 (221)
+.+++...+.. .+.+++..+++.-|.++-. .+....|+..+..... .......++-+|..
T Consensus 21 lv~i~~~~n~~-~t~edv~~yLkKedeeGfq~cpd~~l~~fL~GLI~qkRGkde~~P~p~ve~~inNNivLkKLRiAf~l 99 (155)
T COG4807 21 LVRILALGNVE-ATAEDVAVYLKKEDEEGFQRCPDIVLSSFLNGLIYQKRGKDESAPAPEVERRINNNIVLKKLRIAFSL 99 (155)
T ss_pred HHHHHHhcCcc-cCHHHHHHHHHHhhHhHHhhCcHHHHHHHhcchheeecccccCCCCCcceeeecchhhHHhHhHhhhc
Confidence 55555555555 6666666555554433321 1334444444432111 12234456667766
Q ss_pred hcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 027592 163 FDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVD 201 (221)
Q Consensus 163 ~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d 201 (221)
=+. ++..++...+ .+++..|+..+|+.-|
T Consensus 100 K~~---------Dm~~I~~~~~-f~vS~pElsAlfR~~~ 128 (155)
T COG4807 100 KTD---------DMLAILTEQQ-FRVSMPELSALFRAPD 128 (155)
T ss_pred ccc---------hHHHHHhccC-cccccHHHHHHHhCCC
Confidence 554 4888888888 9999999999998754
No 295
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.94 E-value=1.6e+02 Score=20.59 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 172 TAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 172 ~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
|.+|++.++..-+ ..++++++++|+.-.
T Consensus 81 t~~ElRsIla~e~-~~~s~E~l~~Ildiv 108 (114)
T COG1460 81 TPDELRSILAKER-VMLSDEELDKILDIV 108 (114)
T ss_pred CHHHHHHHHHHcc-CCCCHHHHHHHHHHH
Confidence 5678888888777 778888888877654
No 296
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=21.87 E-value=39 Score=21.76 Aligned_cols=41 Identities=17% Similarity=0.377 Sum_probs=28.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccH
Q 027592 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPL 136 (221)
Q Consensus 94 ~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~ 136 (221)
.|.=..-||-++|..+|.. .-+..++.+++.+. .+.|.+.|
T Consensus 38 S~k~~~p~fPkFLn~LGte-IiEnAVefiLrSMt-R~tgF~E~ 78 (88)
T PF15144_consen 38 SGKNPEPDFPKFLNLLGTE-IIENAVEFILRSMT-RSTGFMEF 78 (88)
T ss_pred cCCCCCCchHHHHHHhhHH-HHHHHHHHHHHHhh-cccCceec
Confidence 4555566899999988887 77778888887773 44555444
No 297
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=21.85 E-value=1.9e+02 Score=27.21 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHh
Q 027592 156 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 219 (221)
Q Consensus 156 l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d~~~~g~i~~~eF~~~l~~ 219 (221)
.+.+|+..-..+.-++..+.+..++ .+++++..+..++...++.|+++.|......
T Consensus 406 A~~iF~nv~~p~~~~i~ld~~~~f~--------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 406 ARKIFKNVAKPGVILIDLDDLLRFM--------GDEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHHHhccCCCCccchhhhhhhhcC--------CHHHHHHHHHhhhhhcccCccHHHHHHHHHH
No 298
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=21.75 E-value=2.1e+02 Score=17.87 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----CCCCCCHHHHHHHHHhh
Q 027592 79 NYELVQACKLLDRDNDGVVLRSELEALLIRL----GADPPTQEEVKSMLSEV 126 (221)
Q Consensus 79 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~----g~~~~~~~~~~~l~~~~ 126 (221)
...|..+...++..-.--|-..+|+.++..+ |.. .+++.+..+|..|
T Consensus 22 ~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~-~~ediLd~IFs~F 72 (73)
T PF12631_consen 22 LEHLEDALEALENGLPLDLVAEDLREALESLGEITGEV-VTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS---HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHhh
Confidence 3445555555554434455566777777666 555 6666677777543
No 299
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=21.70 E-value=1.5e+02 Score=26.32 Aligned_cols=88 Identities=15% Similarity=0.045 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHH
Q 027592 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPEL 156 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l 156 (221)
...+....+|..+-.-+...|+..||..++..+|.. ....+-.+.|..-+.... .+.|..|+.... ......+.+
T Consensus 482 q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~-~dk~egi~~F~~~a~s~~-gv~yl~v~~~i~---sel~D~d~v 556 (612)
T COG5069 482 QVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLK-GDKEEGIRSFGDPAGSVS-GVFYLDVLKGIH---SELVDYDLV 556 (612)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccc-cCCccceeeccCCccccc-cchHHHHHHHHh---hhhcChhhh
Confidence 344556667777766666789999999999999987 554444444543322222 356666666553 233455566
Q ss_pred HHHHhhhcCCCCC
Q 027592 157 KETFDFFDADHDG 169 (221)
Q Consensus 157 ~~~f~~~D~d~dG 169 (221)
...|..||.-.|+
T Consensus 557 ~~~~~~f~diad~ 569 (612)
T COG5069 557 TRGFTEFDDIADA 569 (612)
T ss_pred hhhHHHHHHhhhh
Confidence 6666666543333
No 300
>PHA01351 putative minor structural protein
Probab=21.53 E-value=3.4e+02 Score=25.61 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=15.1
Q ss_pred CCCCcCHHHHHHHHHHhC
Q 027592 167 HDGKITAEELFGVFTKLG 184 (221)
Q Consensus 167 ~dG~I~~~e~~~~l~~~~ 184 (221)
+.|+++.+++...+..+|
T Consensus 589 kKGY~d~qq~ksElk~LG 606 (1070)
T PHA01351 589 KKGYLSLDEIKKQFKAIG 606 (1070)
T ss_pred HhccccHHHHHHHHHhhc
Confidence 578888888888888887
No 301
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.44 E-value=2.7e+02 Score=19.85 Aligned_cols=49 Identities=24% Similarity=0.245 Sum_probs=36.1
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (221)
Q Consensus 71 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~ 126 (221)
...+|+++.++|....-.+-. .+|.++..|+.... | .+-..+...++.+
T Consensus 2 a~~~T~eer~eLk~rIvElVR-e~GRiTi~ql~~~T---G---asR~Tvk~~lreL 50 (127)
T PF06163_consen 2 ARVFTPEEREELKARIVELVR-EHGRITIKQLVAKT---G---ASRNTVKRYLREL 50 (127)
T ss_pred CCcCCHHHHHHHHHHHHHHHH-HcCCccHHHHHHHH---C---CCHHHHHHHHHHH
Confidence 346788888888877666654 58899999888876 4 5566777777666
No 302
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=21.37 E-value=3.1e+02 Score=20.49 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=33.7
Q ss_pred CCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHH
Q 027592 130 GDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGM 196 (221)
Q Consensus 130 ~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i 196 (221)
....|+.+++..++............+...|....++ .-..+|..+| ++++++..|
T Consensus 112 ~~~~V~~~~w~~l~~~~g~~~~~m~~wh~~fe~~~p~--------~h~~~l~~~g---~~~~~~~~i 167 (172)
T cd04790 112 EQRLVTKEKWVAILKAAGMDEADMRRWHIEFEKMEPE--------AHQEFLQSLG---IPEDEIERI 167 (172)
T ss_pred ccccCCHHHHHHHHHHcCCChHHHHHHHHHHHHhCcH--------HHHHHHHHcC---CCHHHHHHH
Confidence 3445777777777643333344446677777766654 3556677766 777776654
No 303
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.20 E-value=3.9e+02 Score=20.58 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=33.3
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 138 ALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 138 ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
|++.-+. ...+.+-...+.+.|..|+.|.|+...+..+.+. .+.++.+.+.++.+
T Consensus 107 e~l~~w~----~g~~~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl----~i~D~~w~~am~aI 161 (195)
T PF11363_consen 107 ECLNEWA----KGADPELRALVNRAFQVDKEGNLNTSRILGLRRL----EIDDERWQEAMDAI 161 (195)
T ss_pred HHHHHHh----cCCChHHHHHHHHHHhcCCCCCcCHHHHHHHHhc----cCCCHHHHHHHHHH
Confidence 5555553 2233333344567888888888888877766552 35566666655554
No 304
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=21.02 E-value=2.1e+02 Score=18.79 Aligned_cols=29 Identities=14% Similarity=-0.002 Sum_probs=20.2
Q ss_pred CcCHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 027592 170 KITAEELFGVFTKLGDELCTLDDCRGMIAL 199 (221)
Q Consensus 170 ~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~ 199 (221)
.|+.+++.++..-.. ..+++++++.+...
T Consensus 2 ~i~~e~i~~la~La~-l~l~~ee~~~~~~~ 30 (95)
T PRK00034 2 AITREEVKHLAKLAR-LELSEEELEKFAGQ 30 (95)
T ss_pred CCCHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 367788888777666 77888876655433
No 305
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=20.94 E-value=3.5e+02 Score=19.95 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=33.2
Q ss_pred HHHHHHhh-hcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 027592 155 ELKETFDF-FDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVD 201 (221)
Q Consensus 155 ~l~~~f~~-~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~d 201 (221)
-+..+|.. +|.+.+-..+.+++..-|...| +.+++|.+.+.-++
T Consensus 4 VL~yLfE~y~~~~~~~~~d~~~L~~~L~~aG---F~~~eI~~Al~WL~ 48 (155)
T PF04361_consen 4 VLMYLFENYIDFESDACPDQDDLTRELSAAG---FEDEEINKALDWLE 48 (155)
T ss_pred HHHHHHHHHcCCccccCCCHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 45566754 4555677889999999999977 88999988776554
No 306
>PRK08136 glycosyl transferase family protein; Provisional
Probab=20.73 E-value=5e+02 Score=21.68 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=20.2
Q ss_pred CCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHH
Q 027592 150 PACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRG 195 (221)
Q Consensus 150 ~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~ 195 (221)
....++...+|..+ =+|.++..++..+|..+.-...+.+|+.-
T Consensus 19 ~Lt~eEA~~~~~~i---l~g~~~~~qi~AfL~alr~KgET~eElaG 61 (317)
T PRK08136 19 DLDRDTARALYGAM---LDGRVPDLELGAILIALRIKGESEAEMLG 61 (317)
T ss_pred CcCHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 33444444444433 14555555555555544323345555433
No 307
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=20.69 E-value=3.3e+02 Score=19.54 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=26.7
Q ss_pred CCcccHHHHHHHHcCCCC-------CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHHHh
Q 027592 131 DGYIPLEALISRVGNSSC-------EPACEPELKETFDFFDADHDGKITAEELFGVFTKL 183 (221)
Q Consensus 131 ~g~I~~~ef~~~~~~~~~-------~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~~~ 183 (221)
+|.|+..||+..++.... ...+...+..+|+++= |....+..|+......+
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f~~~~~~~R~iEl~~khlL--GR~p~~~~Ei~~~~~i~ 99 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRFFEPNSNYRFIELAFKHLL--GRAPYNQAEISAYSQIL 99 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHHTTTS-HHHHHHHHHHHHC--SS--SSHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHHHHcccccchHHHHHHHHHHh--CCCCCCHHHHHHHHHHH
Confidence 466888888888753221 2334444555565553 45555566666665544
No 308
>PRK09462 fur ferric uptake regulator; Provisional
Probab=20.58 E-value=3.2e+02 Score=19.59 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=25.9
Q ss_pred HHHhhhcCCCCCCcCHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 027592 158 ETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 200 (221)
Q Consensus 158 ~~f~~~D~d~dG~I~~~e~~~~l~~~~~~~~~~~~~~~i~~~~ 200 (221)
.+++.+-...++.+|.+|+...|...+ ..++...+-..+..+
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~-~~i~~aTVYR~L~~L 62 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMG-EEIGLATVYRVLNQF 62 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHH
Confidence 344444433456777777777777766 666666666555544
No 309
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=20.51 E-value=2.5e+02 Score=18.15 Aligned_cols=49 Identities=12% Similarity=0.274 Sum_probs=30.7
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHH-HHHHhhcCC------CCcceeHHHHHHHHHhC
Q 027592 171 ITAEELFGVFTKLGDELCTLDDCR-GMIALVDKN------GDGFVCFEDFSRMMELQ 220 (221)
Q Consensus 171 I~~~e~~~~l~~~~~~~~~~~~~~-~i~~~~d~~------~~g~i~~~eF~~~l~~~ 220 (221)
|-..|...+|...+ .+++.+++. .|...|..+ .-..++.++.+.+|..+
T Consensus 4 iHgHeVL~mmi~~~-~~~t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~r 59 (78)
T PF10678_consen 4 IHGHEVLNMMIESG-NPYTKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEER 59 (78)
T ss_pred cHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHc
Confidence 34556667776666 677777664 445566443 22348888888887654
No 310
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=20.37 E-value=3.6e+02 Score=19.83 Aligned_cols=84 Identities=11% Similarity=0.249 Sum_probs=48.0
Q ss_pred CCCCcccHHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHHHHHHhhhcCCCCCC
Q 027592 92 DNDGVVLRSELEALLIRLGA-DPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGK 170 (221)
Q Consensus 92 d~~G~i~~~el~~~l~~~g~-~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~d~dG~ 170 (221)
|.+-.|...-+.+++..+-. +-.-..+.+.++..+ =-||+.++. ..+-+.++.+..-+
T Consensus 8 dde~sLPkAtv~KmIke~lP~d~rvakeareliinc---------CvEFI~liS------------sEAneic~~e~KKT 66 (156)
T KOG0871|consen 8 DDELSLPKATVNKMIKEMLPKDVRVAKEARELIINC---------CVEFINLIS------------SEANEICNKEAKKT 66 (156)
T ss_pred cccccCcHHHHHHHHHHhCCcccccchHHHHHHHHH---------HHHHHHHHH------------HHHHHHHhHHhccc
Confidence 34556777777777766532 101123445555444 126666663 34555666777778
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHHHHH
Q 027592 171 ITAEELFGVFTKLGDELCTLDDCRGMI 197 (221)
Q Consensus 171 I~~~e~~~~l~~~~~~~~~~~~~~~i~ 197 (221)
|..+.....|+.+| +.---+++..++
T Consensus 67 Ia~EHV~KALe~Lg-F~eYiee~~~vl 92 (156)
T KOG0871|consen 67 IAPEHVIKALENLG-FGEYIEEAEEVL 92 (156)
T ss_pred CCHHHHHHHHHHcc-hHHHHHHHHHHH
Confidence 88888888888877 543333344333
No 311
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=20.36 E-value=2.9e+02 Score=23.33 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHcCCCCCCCChHHH
Q 027592 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPEL 156 (221)
Q Consensus 77 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~d~~~~g~I~~~ef~~~~~~~~~~~~~~~~l 156 (221)
++++.+.+-|+ .|.|....+--+||.+....+... ....-+.-+.+.+-.+=+|.+=|.|...-+. .....+
T Consensus 41 ~e~~A~l~Efr-~DyNr~HF~R~~eF~~~~~~l~~~-~r~~FidFLerSctaEFSGflLYKEl~rrlk------~~nP~l 112 (357)
T PLN02508 41 AEFEALLQEFK-TDYNQTHFVRNEEFKAAADKIQGP-LRQIFIEFLERSCTAEFSGFLLYKELGRRLK------KTNPVV 112 (357)
T ss_pred HHHHHHHHHHH-hCccccccccChhhccchhhCCHH-HHHHHHHHHHhhhhhhcccchHHHHHHHhcc------cCChHH
Confidence 34444544444 477777788888887766554222 2333455666666667789999999887773 445677
Q ss_pred HHHHhhhcCC
Q 027592 157 KETFDFFDAD 166 (221)
Q Consensus 157 ~~~f~~~D~d 166 (221)
.++|..+-.|
T Consensus 113 ae~F~lMaRD 122 (357)
T PLN02508 113 AEIFTLMSRD 122 (357)
T ss_pred HHHHHHhCch
Confidence 8888877665
No 312
>COG3820 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.32 E-value=1.2e+02 Score=22.96 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=35.1
Q ss_pred CcccHHHHHHHHcCCCC--CCCChHHHHHHHhhhcCCCCCCcCHHHHHHHHH
Q 027592 132 GYIPLEALISRVGNSSC--EPACEPELKETFDFFDADHDGKITAEELFGVFT 181 (221)
Q Consensus 132 g~I~~~ef~~~~~~~~~--~~~~~~~l~~~f~~~D~d~dG~I~~~e~~~~l~ 181 (221)
-.++|++...++..+-. ...-..+..+-.+-+|+-.+|.++.+|+.+.-.
T Consensus 19 TsLsF~QIA~FCglHplEvk~iADGE~aq~IkGldPI~~GQLtreEi~rae~ 70 (230)
T COG3820 19 TSLSFDQIADFCGLHPLEVKGIADGEVAQGIKGLDPIANGQLTREEIARAEK 70 (230)
T ss_pred ccccHHHHHHHhCcCcceeeeeccchhhccccCCCccccCcccHHHHHhhhc
Confidence 34888888888753222 344445566667788888999999999887643
No 313
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=20.17 E-value=3e+02 Score=18.86 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 027592 75 SLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSML 123 (221)
Q Consensus 75 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~ 123 (221)
+.+...++.++...+=...+|.+...+++.+....| ++..++..++
T Consensus 43 ~~e~~~~~~~~i~~~~~~~~~~~~~~~i~~~r~~~g---ltq~~lA~~l 88 (127)
T TIGR03830 43 DPEESKRNSAALADFYRKVDGLLTPPEIRRIRKKLG---LSQREAAELL 88 (127)
T ss_pred cHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHcC---CCHHHHHHHh
Confidence 445555566555555556778888999988888776 4466666555
No 314
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=20.16 E-value=3.3e+02 Score=21.90 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 027592 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALL 106 (221)
Q Consensus 74 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l 106 (221)
||.-+.+.+..+|..++.| +|.++..++..-+
T Consensus 177 LSySEleAv~~IL~~L~~~-egrlse~eLAerl 208 (251)
T TIGR02787 177 LSYSELEAVEHIFEELDGN-EGLLVASKIADRV 208 (251)
T ss_pred ccHhHHHHHHHHHHHhccc-cccccHHHHHHHH
Confidence 4444445555555554432 3455555544443
Done!