Query 027593
Match_columns 221
No_of_seqs 132 out of 1814
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 12:14:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03071 GTP-binding nuclear p 100.0 1.1E-37 2.4E-42 233.9 24.6 217 1-217 1-217 (219)
2 PTZ00132 GTP-binding nuclear p 100.0 9.9E-37 2.2E-41 228.7 24.4 212 8-219 4-215 (215)
3 KOG0084 GTPase Rab1/YPT1, smal 100.0 1E-36 2.2E-41 214.3 17.4 174 9-182 5-182 (205)
4 KOG0080 GTPase Rab18, small G 100.0 2.5E-35 5.3E-40 200.2 15.5 169 10-178 8-180 (209)
5 KOG0092 GTPase Rab5/YPT51 and 100.0 3.9E-35 8.4E-40 205.6 17.0 165 11-175 3-170 (200)
6 KOG0078 GTP-binding protein SE 100.0 1.6E-34 3.5E-39 206.1 16.5 168 9-176 8-178 (207)
7 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.1E-34 4.5E-39 202.0 16.1 170 5-174 14-187 (221)
8 smart00176 RAN Ran (Ras-relate 100.0 2.2E-33 4.9E-38 207.1 21.3 188 19-206 1-188 (200)
9 cd04121 Rab40 Rab40 subfamily. 100.0 3.4E-33 7.4E-38 204.6 19.9 165 12-176 5-171 (189)
10 KOG0098 GTPase Rab2, small G p 100.0 6.5E-34 1.4E-38 198.0 14.1 164 11-174 4-170 (216)
11 KOG0096 GTPase Ran/TC4/GSP1 (n 100.0 1.8E-33 3.9E-38 196.3 15.1 215 1-218 1-215 (216)
12 cd04133 Rop_like Rop subfamily 100.0 1.8E-32 3.9E-37 198.6 20.0 158 14-172 2-173 (176)
13 cd00877 Ran Ran (Ras-related n 100.0 3.1E-32 6.6E-37 196.5 20.5 164 14-177 1-164 (166)
14 KOG0394 Ras-related GTPase [Ge 100.0 6.9E-33 1.5E-37 192.5 16.0 166 10-175 6-181 (210)
15 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.2E-32 6.9E-37 198.5 19.0 161 11-172 3-180 (182)
16 KOG0079 GTP-binding protein H- 100.0 1.7E-33 3.6E-38 188.7 10.8 161 13-173 8-170 (198)
17 cd04120 Rab12 Rab12 subfamily. 100.0 4.6E-32 1E-36 200.4 19.4 161 14-174 1-165 (202)
18 cd01875 RhoG RhoG subfamily. 100.0 5.2E-32 1.1E-36 199.5 19.4 162 11-173 1-178 (191)
19 cd04131 Rnd Rnd subfamily. Th 100.0 1.5E-31 3.2E-36 194.6 19.3 159 13-172 1-176 (178)
20 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.4E-31 3E-36 201.0 19.6 163 11-174 11-190 (232)
21 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3.9E-31 8.4E-36 193.1 19.1 161 14-175 1-169 (182)
22 cd04122 Rab14 Rab14 subfamily. 100.0 4.8E-31 1E-35 190.3 19.2 161 13-173 2-165 (166)
23 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.4E-31 1.4E-35 195.3 19.2 162 14-175 1-171 (201)
24 cd04124 RabL2 RabL2 subfamily. 100.0 1.1E-30 2.4E-35 187.5 19.3 159 14-173 1-159 (161)
25 cd01867 Rab8_Rab10_Rab13_like 100.0 1.1E-30 2.4E-35 188.5 19.0 162 12-173 2-166 (167)
26 cd04110 Rab35 Rab35 subfamily. 100.0 1.3E-30 2.8E-35 193.3 19.7 165 11-175 4-170 (199)
27 cd04117 Rab15 Rab15 subfamily. 100.0 1.1E-30 2.4E-35 187.5 18.4 157 14-170 1-160 (161)
28 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.1E-30 2.5E-35 189.2 18.5 160 13-173 2-165 (172)
29 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.7E-30 3.7E-35 187.4 19.2 160 13-172 2-164 (166)
30 cd01865 Rab3 Rab3 subfamily. 100.0 2.2E-30 4.7E-35 186.7 19.3 159 14-172 2-163 (165)
31 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.5E-30 5.4E-35 187.9 19.1 157 14-171 2-174 (175)
32 KOG0086 GTPase Rab4, small G p 100.0 1.8E-31 3.9E-36 180.0 11.9 169 11-179 7-178 (214)
33 cd04119 RJL RJL (RabJ-Like) su 100.0 2.4E-30 5.3E-35 186.7 18.4 159 14-172 1-167 (168)
34 KOG0095 GTPase Rab30, small G 100.0 2.7E-31 5.9E-36 178.5 11.9 164 12-175 6-172 (213)
35 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.5E-30 3.2E-35 185.1 16.2 167 8-174 9-178 (222)
36 cd04127 Rab27A Rab27a subfamil 100.0 2.6E-30 5.7E-35 188.8 18.1 162 12-173 3-178 (180)
37 cd01871 Rac1_like Rac1-like su 100.0 4.8E-30 1E-34 186.2 18.8 156 14-170 2-173 (174)
38 PTZ00369 Ras-like protein; Pro 100.0 4.7E-30 1E-34 188.9 18.7 162 11-173 3-168 (189)
39 PF00071 Ras: Ras family; Int 100.0 5E-30 1.1E-34 184.2 18.3 158 15-172 1-161 (162)
40 cd04136 Rap_like Rap-like subf 100.0 4.2E-30 9.1E-35 184.7 17.9 158 13-171 1-162 (163)
41 cd04175 Rap1 Rap1 subgroup. T 100.0 5.7E-30 1.2E-34 184.3 18.4 159 13-172 1-163 (164)
42 cd04106 Rab23_lke Rab23-like s 100.0 5.2E-30 1.1E-34 184.1 17.7 157 14-170 1-161 (162)
43 KOG0093 GTPase Rab3, small G p 100.0 8E-31 1.7E-35 175.6 12.4 164 12-175 20-186 (193)
44 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 6.4E-30 1.4E-34 191.1 18.7 161 14-175 2-179 (222)
45 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 8.5E-30 1.8E-34 184.3 18.7 159 15-173 2-166 (170)
46 cd04134 Rho3 Rho3 subfamily. 100.0 1E-29 2.2E-34 187.0 19.3 158 15-173 2-175 (189)
47 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1E-29 2.2E-34 182.3 18.4 158 13-171 1-161 (162)
48 cd04116 Rab9 Rab9 subfamily. 100.0 1.4E-29 3E-34 183.4 19.0 160 11-170 3-169 (170)
49 cd04109 Rab28 Rab28 subfamily. 100.0 1.4E-29 3.1E-34 189.8 18.9 161 14-174 1-168 (215)
50 cd04176 Rap2 Rap2 subgroup. T 100.0 1.5E-29 3.2E-34 182.0 18.1 158 13-171 1-162 (163)
51 cd01868 Rab11_like Rab11-like. 100.0 1.9E-29 4.1E-34 181.8 18.7 160 12-171 2-164 (165)
52 cd01864 Rab19 Rab19 subfamily. 100.0 1.9E-29 4.1E-34 181.8 18.3 159 12-170 2-164 (165)
53 cd04112 Rab26 Rab26 subfamily. 100.0 2.2E-29 4.7E-34 185.6 18.5 162 14-175 1-166 (191)
54 cd01866 Rab2 Rab2 subfamily. 100.0 4.2E-29 9E-34 180.5 19.5 161 12-172 3-166 (168)
55 cd04125 RabA_like RabA-like su 100.0 2.5E-29 5.5E-34 184.9 18.6 161 14-174 1-164 (188)
56 cd04113 Rab4 Rab4 subfamily. 100.0 2.3E-29 4.9E-34 180.6 17.9 157 14-170 1-160 (161)
57 cd04118 Rab24 Rab24 subfamily. 100.0 4.1E-29 8.8E-34 184.5 19.5 162 14-175 1-169 (193)
58 PLN03110 Rab GTPase; Provision 100.0 3.7E-29 8.1E-34 187.5 19.4 164 10-173 9-175 (216)
59 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.1E-29 8.8E-34 180.9 18.6 159 13-171 2-168 (170)
60 KOG0088 GTPase Rab21, small G 100.0 1.4E-30 3.1E-35 176.6 10.1 175 1-175 1-178 (218)
61 cd04140 ARHI_like ARHI subfami 100.0 4.5E-29 9.8E-34 179.8 18.3 155 14-169 2-162 (165)
62 cd04111 Rab39 Rab39 subfamily. 100.0 4.2E-29 9E-34 186.5 18.2 163 12-174 1-168 (211)
63 cd04132 Rho4_like Rho4-like su 100.0 3.8E-29 8.3E-34 183.8 17.7 162 14-176 1-171 (187)
64 cd04145 M_R_Ras_like M-Ras/R-R 100.0 6.9E-29 1.5E-33 178.5 18.4 159 12-171 1-163 (164)
65 smart00175 RAB Rab subfamily o 100.0 7.6E-29 1.6E-33 178.3 18.5 160 14-173 1-163 (164)
66 cd04144 Ras2 Ras2 subfamily. 100.0 3E-29 6.6E-34 184.7 16.6 160 15-175 1-166 (190)
67 smart00174 RHO Rho (Ras homolo 100.0 1.2E-28 2.5E-33 179.1 18.3 157 16-173 1-173 (174)
68 cd01861 Rab6 Rab6 subfamily. 100.0 1.1E-28 2.4E-33 177.0 18.0 157 14-170 1-160 (161)
69 cd01860 Rab5_related Rab5-rela 100.0 1.5E-28 3.2E-33 176.7 18.7 159 13-171 1-162 (163)
70 PLN03108 Rab family protein; P 100.0 1.2E-28 2.7E-33 184.0 18.5 163 12-174 5-170 (210)
71 smart00173 RAS Ras subfamily o 100.0 1.3E-28 2.8E-33 177.2 18.0 158 14-172 1-162 (164)
72 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.6E-28 3.4E-33 176.8 18.2 158 14-171 1-163 (164)
73 cd01873 RhoBTB RhoBTB subfamil 100.0 1.4E-28 2.9E-33 181.3 18.1 156 13-170 2-194 (195)
74 cd01863 Rab18 Rab18 subfamily. 100.0 2.6E-28 5.5E-33 175.1 19.1 157 14-170 1-160 (161)
75 cd04142 RRP22 RRP22 subfamily. 100.0 2.5E-28 5.5E-33 180.4 19.4 163 14-176 1-178 (198)
76 cd01862 Rab7 Rab7 subfamily. 100.0 3E-28 6.4E-33 176.6 18.7 161 14-174 1-169 (172)
77 KOG0091 GTPase Rab39, small G 100.0 1.7E-29 3.8E-34 172.2 11.2 163 11-173 6-174 (213)
78 cd04126 Rab20 Rab20 subfamily. 100.0 2.8E-28 6.1E-33 182.1 18.6 155 14-173 1-191 (220)
79 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4.7E-28 1E-32 175.8 18.9 155 14-169 1-171 (173)
80 cd04103 Centaurin_gamma Centau 100.0 2.7E-28 5.9E-33 174.2 17.3 150 14-170 1-157 (158)
81 cd01892 Miro2 Miro2 subfamily. 100.0 3.7E-28 8.1E-33 175.6 18.0 161 11-172 2-166 (169)
82 cd04148 RGK RGK subfamily. Th 100.0 9.8E-28 2.1E-32 180.3 20.9 189 14-204 1-198 (221)
83 PLN03118 Rab family protein; P 100.0 6.7E-28 1.5E-32 180.3 19.5 167 9-176 10-181 (211)
84 cd04135 Tc10 TC10 subfamily. 100.0 9.2E-28 2E-32 174.4 19.3 157 14-171 1-173 (174)
85 cd04143 Rhes_like Rhes_like su 100.0 4.9E-28 1.1E-32 184.2 17.9 157 14-171 1-170 (247)
86 cd04123 Rab21 Rab21 subfamily. 100.0 1.3E-27 2.9E-32 171.3 18.5 158 14-171 1-161 (162)
87 PLN00223 ADP-ribosylation fact 100.0 4.5E-28 9.8E-33 176.9 15.8 160 10-174 14-180 (181)
88 cd04177 RSR1 RSR1 subgroup. R 100.0 1.8E-27 4E-32 171.9 18.7 159 13-172 1-164 (168)
89 cd04146 RERG_RasL11_like RERG/ 100.0 8.5E-28 1.8E-32 173.2 16.3 157 15-172 1-164 (165)
90 cd00154 Rab Rab family. Rab G 100.0 1.3E-27 2.8E-32 170.6 17.0 155 14-168 1-158 (159)
91 cd04149 Arf6 Arf6 subfamily. 100.0 7.2E-28 1.6E-32 173.9 15.0 155 10-169 6-167 (168)
92 cd04158 ARD1 ARD1 subfamily. 100.0 1.3E-27 2.9E-32 172.8 16.2 158 15-177 1-166 (169)
93 cd04114 Rab30 Rab30 subfamily. 100.0 4.3E-27 9.3E-32 170.1 18.7 160 12-171 6-168 (169)
94 cd01870 RhoA_like RhoA-like su 100.0 5.8E-27 1.3E-31 170.3 18.9 157 14-171 2-174 (175)
95 KOG0081 GTPase Rab27, small G 100.0 1.6E-29 3.4E-34 171.7 4.3 163 12-174 8-183 (219)
96 cd04139 RalA_RalB RalA/RalB su 100.0 6.2E-27 1.3E-31 168.3 18.1 158 14-172 1-162 (164)
97 cd04129 Rho2 Rho2 subfamily. 100.0 1.4E-26 3E-31 170.1 20.1 160 14-174 2-175 (187)
98 smart00177 ARF ARF-like small 100.0 2.8E-27 6E-32 172.0 16.0 156 11-171 11-173 (175)
99 PTZ00133 ADP-ribosylation fact 100.0 4.9E-27 1.1E-31 171.6 16.1 160 10-174 14-180 (182)
100 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.8E-27 8.2E-32 168.7 15.0 151 14-169 1-158 (159)
101 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.8E-27 3.8E-32 171.3 12.5 150 16-169 2-163 (164)
102 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 9.9E-27 2.1E-31 170.3 16.6 161 12-173 2-171 (183)
103 cd00157 Rho Rho (Ras homology) 100.0 2.4E-26 5.2E-31 166.4 18.1 155 14-169 1-170 (171)
104 cd04154 Arl2 Arl2 subfamily. 99.9 7.9E-27 1.7E-31 169.4 15.1 155 10-169 11-172 (173)
105 KOG0395 Ras-related GTPase [Ge 99.9 1E-26 2.2E-31 170.4 15.6 161 12-173 2-166 (196)
106 KOG0083 GTPase Rab26/Rab37, sm 99.9 9.5E-29 2.1E-33 163.2 4.3 158 17-174 1-162 (192)
107 cd01893 Miro1 Miro1 subfamily. 99.9 4E-26 8.7E-31 164.6 17.4 157 14-172 1-164 (166)
108 cd00876 Ras Ras family. The R 99.9 3E-26 6.4E-31 164.0 16.2 155 15-170 1-159 (160)
109 cd04147 Ras_dva Ras-dva subfam 99.9 8.4E-26 1.8E-30 167.4 17.5 159 15-174 1-165 (198)
110 cd04157 Arl6 Arl6 subfamily. 99.9 2.1E-26 4.6E-31 165.3 13.7 151 15-169 1-161 (162)
111 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 5.3E-26 1.1E-30 165.2 15.2 154 11-169 13-173 (174)
112 cd04102 RabL3 RabL3 (Rab-like3 99.9 6.8E-26 1.5E-30 167.2 15.7 147 14-160 1-178 (202)
113 KOG0393 Ras-related small GTPa 99.9 2.2E-26 4.9E-31 165.1 11.9 165 11-176 2-183 (198)
114 cd04137 RheB Rheb (Ras Homolog 99.9 1.8E-25 3.9E-30 163.2 17.0 161 14-175 2-166 (180)
115 KOG0097 GTPase Rab14, small G 99.9 5.4E-26 1.2E-30 151.8 12.3 165 12-176 10-177 (215)
116 cd00879 Sar1 Sar1 subfamily. 99.9 1.2E-25 2.6E-30 165.6 14.9 155 11-170 17-189 (190)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.6E-25 3.5E-30 160.4 13.5 151 15-169 1-159 (160)
118 cd04161 Arl2l1_Arl13_like Arl2 99.9 2.1E-25 4.7E-30 160.9 13.7 150 15-169 1-166 (167)
119 PLN00023 GTP-binding protein; 99.9 5.2E-25 1.1E-29 170.1 16.4 142 6-147 14-189 (334)
120 cd04151 Arl1 Arl1 subfamily. 99.9 3.5E-25 7.7E-30 158.4 14.4 150 15-169 1-157 (158)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.1E-25 4.6E-30 160.9 13.0 151 15-169 1-166 (167)
122 PF00025 Arf: ADP-ribosylation 99.9 1.1E-24 2.4E-29 158.1 15.9 157 10-171 11-175 (175)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.1E-24 2.4E-29 155.8 15.1 150 15-169 1-157 (158)
124 cd01890 LepA LepA subfamily. 99.9 1.5E-24 3.3E-29 158.2 14.5 154 15-171 2-176 (179)
125 smart00178 SAR Sar1p-like memb 99.9 2.1E-24 4.6E-29 158.0 14.8 155 11-170 15-183 (184)
126 cd01897 NOG NOG1 is a nucleola 99.9 5E-24 1.1E-28 153.9 16.1 156 14-171 1-167 (168)
127 cd04159 Arl10_like Arl10-like 99.9 5.7E-24 1.2E-28 151.7 14.8 150 16-169 2-158 (159)
128 KOG0073 GTP-binding ADP-ribosy 99.9 5.8E-24 1.3E-28 145.4 13.7 157 12-173 15-179 (185)
129 cd04155 Arl3 Arl3 subfamily. 99.9 4.8E-24 1E-28 154.7 14.0 156 9-169 10-172 (173)
130 TIGR00436 era GTP-binding prot 99.9 1.5E-23 3.3E-28 162.2 16.6 167 15-186 2-178 (270)
131 cd01898 Obg Obg subfamily. Th 99.9 7.6E-24 1.7E-28 153.2 13.6 154 15-170 2-169 (170)
132 PRK15494 era GTPase Era; Provi 99.9 3.3E-23 7.1E-28 164.6 17.8 170 11-186 50-230 (339)
133 KOG4252 GTP-binding protein [S 99.9 1.5E-25 3.4E-30 155.3 1.7 163 11-173 18-182 (246)
134 TIGR00231 small_GTP small GTP- 99.9 2.9E-22 6.3E-27 142.6 16.5 156 13-168 1-160 (161)
135 PF02421 FeoB_N: Ferrous iron 99.9 2.6E-23 5.6E-28 145.8 10.3 147 14-167 1-156 (156)
136 PTZ00099 rab6; Provisional 99.9 4.2E-22 9.1E-27 144.4 16.7 141 36-176 3-146 (176)
137 KOG0070 GTP-binding ADP-ribosy 99.9 1E-22 2.2E-27 142.8 12.6 162 7-173 11-179 (181)
138 PRK12299 obgE GTPase CgtA; Rev 99.9 1.7E-22 3.7E-27 159.5 14.8 160 14-175 159-331 (335)
139 TIGR02528 EutP ethanolamine ut 99.9 1E-22 2.2E-27 143.1 11.8 133 15-168 2-141 (142)
140 cd01878 HflX HflX subfamily. 99.9 2E-22 4.3E-27 150.1 14.0 156 11-171 39-204 (204)
141 cd04171 SelB SelB subfamily. 99.9 3.2E-22 7E-27 143.7 14.2 149 15-169 2-163 (164)
142 COG1100 GTPase SAR1 and relate 99.9 7.2E-22 1.6E-26 148.6 16.1 165 11-175 3-188 (219)
143 TIGR00450 mnmE_trmE_thdF tRNA 99.9 6.6E-22 1.4E-26 161.6 16.0 153 11-173 201-361 (442)
144 cd01891 TypA_BipA TypA (tyrosi 99.9 3.8E-22 8.3E-27 147.4 12.5 146 14-162 3-172 (194)
145 PRK12298 obgE GTPase CgtA; Rev 99.9 1.3E-21 2.7E-26 157.5 15.6 162 15-178 161-339 (390)
146 PRK04213 GTP-binding protein; 99.9 4.7E-22 1E-26 147.7 12.3 153 11-173 7-193 (201)
147 PRK05291 trmE tRNA modificatio 99.9 1.1E-21 2.4E-26 161.2 14.8 151 11-173 213-371 (449)
148 COG1159 Era GTPase [General fu 99.9 4.5E-21 9.7E-26 144.6 16.3 171 10-184 3-184 (298)
149 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.3E-21 4.9E-26 138.1 13.9 147 14-171 2-156 (157)
150 TIGR02729 Obg_CgtA Obg family 99.9 3.1E-21 6.7E-26 152.3 15.5 156 14-171 158-328 (329)
151 cd01879 FeoB Ferrous iron tran 99.9 3.5E-21 7.5E-26 137.5 14.4 147 18-171 1-156 (158)
152 PF08477 Miro: Miro-like prote 99.9 1.5E-21 3.2E-26 133.0 11.8 114 15-128 1-119 (119)
153 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3E-21 6.5E-26 139.2 14.1 154 15-171 2-165 (168)
154 PRK00089 era GTPase Era; Revie 99.9 8.4E-21 1.8E-25 148.7 17.0 166 11-181 3-180 (292)
155 cd00882 Ras_like_GTPase Ras-li 99.9 5.7E-21 1.2E-25 134.8 14.5 150 18-168 1-156 (157)
156 TIGR01393 lepA GTP-binding pro 99.9 3.8E-21 8.3E-26 162.3 14.8 156 14-172 4-180 (595)
157 PRK12297 obgE GTPase CgtA; Rev 99.9 8.8E-21 1.9E-25 153.4 16.1 159 15-177 160-332 (424)
158 PRK03003 GTP-binding protein D 99.9 3.6E-21 7.7E-26 159.6 13.9 153 14-173 39-200 (472)
159 cd01881 Obg_like The Obg-like 99.9 3.4E-21 7.3E-26 140.0 12.1 151 18-170 1-175 (176)
160 TIGR03156 GTP_HflX GTP-binding 99.9 4.6E-21 1E-25 152.6 13.4 153 12-170 188-350 (351)
161 cd01894 EngA1 EngA1 subfamily. 99.9 6E-21 1.3E-25 136.0 12.1 147 17-170 1-156 (157)
162 PRK03003 GTP-binding protein D 99.9 2.1E-20 4.6E-25 155.0 16.5 158 12-173 210-383 (472)
163 cd01888 eIF2_gamma eIF2-gamma 99.9 1.5E-20 3.3E-25 139.6 13.8 158 14-173 1-200 (203)
164 cd00881 GTP_translation_factor 99.9 8.8E-21 1.9E-25 139.3 12.4 154 15-171 1-186 (189)
165 cd01889 SelB_euk SelB subfamil 99.9 1.1E-20 2.4E-25 139.3 12.8 156 14-172 1-186 (192)
166 PRK09554 feoB ferrous iron tra 99.8 9.6E-20 2.1E-24 157.4 19.2 154 11-171 1-167 (772)
167 cd01895 EngA2 EngA2 subfamily. 99.8 5.5E-20 1.2E-24 133.0 14.9 154 13-170 2-173 (174)
168 TIGR03594 GTPase_EngA ribosome 99.8 4.8E-20 1E-24 151.9 16.3 158 11-172 170-344 (429)
169 KOG0075 GTP-binding ADP-ribosy 99.8 5.1E-21 1.1E-25 128.7 8.4 155 12-170 19-180 (186)
170 PRK12296 obgE GTPase CgtA; Rev 99.8 4.5E-20 9.8E-25 151.2 15.4 160 13-174 159-342 (500)
171 cd04163 Era Era subfamily. Er 99.8 9.8E-20 2.1E-24 130.8 15.3 155 12-170 2-167 (168)
172 PRK15467 ethanolamine utilizat 99.8 1.9E-20 4.1E-25 133.6 10.9 139 15-172 3-147 (158)
173 TIGR03598 GTPase_YsxC ribosome 99.8 2.9E-20 6.3E-25 135.6 12.0 153 3-161 8-179 (179)
174 PRK00454 engB GTP-binding prot 99.8 1.1E-19 2.4E-24 134.4 14.7 158 9-172 20-194 (196)
175 COG0486 ThdF Predicted GTPase 99.8 1E-19 2.3E-24 144.9 15.2 175 12-196 216-398 (454)
176 PF00009 GTP_EFTU: Elongation 99.8 1.5E-20 3.3E-25 138.1 9.5 157 12-171 2-186 (188)
177 PRK11058 GTPase HflX; Provisio 99.8 6.2E-20 1.3E-24 149.3 13.5 156 14-174 198-364 (426)
178 TIGR00487 IF-2 translation ini 99.8 3.1E-19 6.7E-24 150.2 16.7 155 10-169 84-247 (587)
179 PRK00093 GTP-binding protein D 99.8 9.8E-20 2.1E-24 150.2 13.0 148 14-170 2-160 (435)
180 KOG0071 GTP-binding ADP-ribosy 99.8 2E-19 4.3E-24 120.1 11.7 158 9-171 13-177 (180)
181 TIGR03594 GTPase_EngA ribosome 99.8 1.4E-19 3.1E-24 149.1 13.2 152 15-173 1-161 (429)
182 PRK05433 GTP-binding protein L 99.8 2.5E-19 5.4E-24 151.6 14.4 157 13-172 7-184 (600)
183 KOG1423 Ras-like GTPase ERA [C 99.8 7.1E-19 1.5E-23 132.5 15.2 187 4-193 63-292 (379)
184 PRK00093 GTP-binding protein D 99.8 6.3E-19 1.4E-23 145.4 16.4 158 11-172 171-344 (435)
185 COG1160 Predicted GTPases [Gen 99.8 1.9E-19 4.2E-24 143.0 11.4 152 14-172 4-165 (444)
186 CHL00189 infB translation init 99.8 4.3E-19 9.3E-24 151.6 14.2 157 11-170 242-408 (742)
187 PRK05306 infB translation init 99.8 1.1E-18 2.4E-23 150.3 16.5 155 10-169 287-449 (787)
188 KOG1673 Ras GTPases [General f 99.8 5.7E-19 1.2E-23 120.0 11.5 166 10-175 17-189 (205)
189 KOG3883 Ras family small GTPas 99.8 2.9E-18 6.2E-23 116.3 14.6 162 12-173 8-176 (198)
190 PRK09518 bifunctional cytidyla 99.8 9.1E-19 2E-23 151.6 15.4 155 12-173 274-437 (712)
191 PRK12317 elongation factor 1-a 99.8 9.6E-19 2.1E-23 143.6 14.7 156 9-164 2-197 (425)
192 TIGR00437 feoB ferrous iron tr 99.8 8E-19 1.7E-23 148.4 14.0 145 20-171 1-154 (591)
193 KOG0076 GTP-binding ADP-ribosy 99.8 9.4E-20 2E-24 126.0 6.3 164 10-174 14-189 (197)
194 TIGR00475 selB selenocysteine- 99.8 1.8E-18 3.9E-23 146.1 15.3 152 14-173 1-167 (581)
195 PRK09518 bifunctional cytidyla 99.8 9.6E-19 2.1E-23 151.5 13.8 158 12-173 449-622 (712)
196 cd00880 Era_like Era (E. coli 99.8 2.2E-18 4.9E-23 122.6 12.5 149 18-170 1-162 (163)
197 TIGR00483 EF-1_alpha translati 99.8 3E-18 6.5E-23 140.7 14.5 155 10-164 4-199 (426)
198 PRK10218 GTP-binding protein; 99.8 4.7E-18 1E-22 143.4 15.7 157 13-172 5-195 (607)
199 KOG0074 GTP-binding ADP-ribosy 99.8 1.7E-18 3.6E-23 115.9 9.9 157 10-170 14-177 (185)
200 COG0370 FeoB Fe2+ transport sy 99.8 4.9E-18 1.1E-22 140.9 14.7 158 11-175 1-167 (653)
201 COG1160 Predicted GTPases [Gen 99.8 8.4E-18 1.8E-22 133.8 15.2 158 12-173 177-352 (444)
202 cd01876 YihA_EngB The YihA (En 99.8 5.8E-18 1.3E-22 121.8 13.1 148 15-170 1-169 (170)
203 cd04105 SR_beta Signal recogni 99.8 3.6E-18 7.7E-23 126.8 11.7 116 15-131 2-123 (203)
204 TIGR01394 TypA_BipA GTP-bindin 99.8 4.3E-18 9.3E-23 143.7 13.0 155 15-172 3-191 (594)
205 cd04170 EF-G_bact Elongation f 99.8 5.6E-19 1.2E-23 136.7 6.8 150 15-167 1-168 (268)
206 cd01896 DRG The developmentall 99.8 1E-17 2.3E-22 126.7 13.4 150 15-171 2-225 (233)
207 cd04166 CysN_ATPS CysN_ATPS su 99.8 3E-18 6.5E-23 127.8 10.0 146 15-162 1-184 (208)
208 cd01886 EF-G Elongation factor 99.8 1.3E-18 2.8E-23 134.0 7.9 115 15-132 1-131 (270)
209 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.3E-17 7.2E-22 120.5 13.8 147 12-161 1-172 (195)
210 COG2229 Predicted GTPase [Gene 99.8 5.1E-17 1.1E-21 114.1 13.6 163 6-170 3-176 (187)
211 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 2.9E-17 6.3E-22 122.8 12.5 159 15-175 1-179 (232)
212 KOG4423 GTP-binding protein-li 99.7 8.1E-20 1.8E-24 127.7 -1.2 163 13-175 25-197 (229)
213 TIGR00491 aIF-2 translation in 99.7 3.1E-17 6.7E-22 138.0 13.9 152 12-169 3-213 (590)
214 TIGR03680 eif2g_arch translati 99.7 3E-17 6.5E-22 133.8 13.4 160 11-172 2-196 (406)
215 PF10662 PduV-EutP: Ethanolami 99.7 2.7E-17 5.8E-22 113.0 10.4 133 15-167 3-141 (143)
216 cd04169 RF3 RF3 subfamily. Pe 99.7 6.5E-18 1.4E-22 130.0 8.3 117 14-133 3-139 (267)
217 cd01883 EF1_alpha Eukaryotic e 99.7 1.7E-17 3.8E-22 124.6 10.0 145 15-161 1-194 (219)
218 PRK04000 translation initiatio 99.7 6.7E-17 1.5E-21 131.7 13.7 161 9-172 5-201 (411)
219 cd04168 TetM_like Tet(M)-like 99.7 3.8E-17 8.3E-22 123.8 10.9 116 15-133 1-132 (237)
220 KOG0072 GTP-binding ADP-ribosy 99.7 2.1E-17 4.6E-22 110.9 7.8 158 11-173 16-180 (182)
221 TIGR00485 EF-Tu translation el 99.7 1.3E-16 2.9E-21 129.7 13.1 154 1-158 1-179 (394)
222 KOG1489 Predicted GTP-binding 99.7 1.8E-16 3.8E-21 120.3 12.6 154 13-169 196-364 (366)
223 COG0218 Predicted GTPase [Gene 99.7 5.1E-16 1.1E-20 111.4 14.2 157 10-172 21-197 (200)
224 PRK12736 elongation factor Tu; 99.7 3E-16 6.4E-21 127.5 14.0 162 7-171 6-200 (394)
225 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.2E-16 4.7E-21 118.6 12.1 152 15-169 1-220 (224)
226 PRK12735 elongation factor Tu; 99.7 3.7E-16 8E-21 127.0 14.1 160 8-170 7-201 (396)
227 PRK04004 translation initiatio 99.7 3.6E-16 7.7E-21 132.1 14.2 153 11-169 4-215 (586)
228 COG1084 Predicted GTPase [Gene 99.7 4E-16 8.6E-21 119.2 12.1 156 12-170 167-334 (346)
229 PRK10512 selenocysteinyl-tRNA- 99.7 1.2E-15 2.6E-20 129.6 16.2 155 14-171 1-165 (614)
230 KOG1707 Predicted Ras related/ 99.7 4.7E-16 1E-20 126.4 11.0 189 9-205 5-202 (625)
231 cd04104 p47_IIGP_like p47 (47- 99.7 1.5E-15 3.2E-20 112.4 12.5 156 13-175 1-187 (197)
232 TIGR00484 EF-G translation elo 99.7 9.5E-17 2.1E-21 138.8 7.1 143 12-157 9-171 (689)
233 cd04167 Snu114p Snu114p subfam 99.7 4.5E-16 9.8E-21 116.5 9.3 113 15-130 2-136 (213)
234 cd01885 EF2 EF2 (for archaea a 99.7 3.7E-16 8E-21 116.9 8.2 113 15-130 2-138 (222)
235 PLN03126 Elongation factor Tu; 99.7 1.2E-15 2.6E-20 125.9 11.7 150 7-159 75-249 (478)
236 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.3E-14 2.8E-19 107.3 15.9 163 14-178 1-191 (196)
237 CHL00071 tufA elongation facto 99.6 4.2E-15 9E-20 121.4 14.1 148 9-159 8-180 (409)
238 cd01850 CDC_Septin CDC/Septin. 99.6 5.5E-15 1.2E-19 114.4 14.0 140 13-156 4-186 (276)
239 PRK13351 elongation factor G; 99.6 2.6E-15 5.6E-20 130.2 13.2 118 11-131 6-139 (687)
240 PLN00043 elongation factor 1-a 99.6 3.3E-15 7.1E-20 122.8 12.8 151 10-162 4-203 (447)
241 PRK00049 elongation factor Tu; 99.6 8.2E-15 1.8E-19 119.1 14.5 159 8-169 7-200 (396)
242 cd01899 Ygr210 Ygr210 subfamil 99.6 7.7E-15 1.7E-19 115.2 13.1 62 117-179 214-276 (318)
243 KOG0462 Elongation factor-type 99.6 5.5E-15 1.2E-19 119.4 12.4 168 13-185 60-246 (650)
244 KOG1191 Mitochondrial GTPase [ 99.6 8.2E-15 1.8E-19 117.2 13.0 161 12-173 267-451 (531)
245 PRK05124 cysN sulfate adenylyl 99.6 4.1E-15 8.8E-20 123.2 11.5 152 10-163 24-216 (474)
246 PRK00741 prfC peptide chain re 99.6 4.3E-15 9.3E-20 124.1 11.0 119 12-133 9-147 (526)
247 COG2262 HflX GTPases [General 99.6 2.8E-14 6E-19 112.3 14.6 174 6-184 185-368 (411)
248 PTZ00141 elongation factor 1- 99.6 1.5E-14 3.3E-19 118.9 13.7 150 10-162 4-203 (446)
249 PF01926 MMR_HSR1: 50S ribosom 99.6 5E-15 1.1E-19 100.3 8.9 107 15-126 1-116 (116)
250 TIGR02034 CysN sulfate adenyly 99.6 1E-14 2.3E-19 118.9 12.4 147 14-162 1-187 (406)
251 PLN03127 Elongation factor Tu; 99.6 2.9E-14 6.2E-19 117.2 14.6 160 9-171 57-251 (447)
252 COG0536 Obg Predicted GTPase [ 99.6 1.2E-14 2.7E-19 111.6 11.3 160 14-175 160-336 (369)
253 PRK00007 elongation factor G; 99.6 4.6E-15 9.9E-20 128.4 9.7 143 12-157 9-171 (693)
254 PRK09602 translation-associate 99.6 1.1E-13 2.4E-18 111.8 16.3 164 14-181 2-280 (396)
255 PF09439 SRPRB: Signal recogni 99.6 7.2E-15 1.6E-19 105.5 8.1 115 13-131 3-126 (181)
256 COG3596 Predicted GTPase [Gene 99.6 3.2E-14 6.9E-19 106.5 10.9 170 7-178 33-228 (296)
257 TIGR00503 prfC peptide chain r 99.6 2.4E-14 5.1E-19 119.7 11.2 119 11-132 9-147 (527)
258 PRK12739 elongation factor G; 99.6 4.9E-14 1.1E-18 122.1 13.2 118 11-131 6-139 (691)
259 PRK05506 bifunctional sulfate 99.6 3.3E-14 7.2E-19 122.1 12.0 151 10-162 21-211 (632)
260 COG1163 DRG Predicted GTPase [ 99.6 1.3E-13 2.8E-18 105.3 13.2 153 13-172 63-289 (365)
261 KOG0077 Vesicle coat complex C 99.5 2.1E-14 4.4E-19 99.0 7.1 153 12-169 19-190 (193)
262 COG0532 InfB Translation initi 99.5 2.8E-13 6E-18 110.0 14.2 152 12-169 4-167 (509)
263 COG5256 TEF1 Translation elong 99.5 1.4E-13 3E-18 108.4 12.0 154 9-162 3-201 (428)
264 PTZ00327 eukaryotic translatio 99.5 1.4E-13 3.1E-18 113.0 12.6 162 9-172 30-233 (460)
265 COG0481 LepA Membrane GTPase L 99.5 2.4E-13 5.1E-18 108.5 12.2 156 14-172 10-186 (603)
266 PRK12740 elongation factor G; 99.5 5.3E-13 1.2E-17 115.7 11.8 110 19-131 1-126 (668)
267 COG1121 ZnuC ABC-type Mn/Zn tr 99.5 2.7E-13 5.8E-18 101.8 8.1 61 144-211 129-189 (254)
268 TIGR00490 aEF-2 translation el 99.5 2.5E-13 5.5E-18 118.0 8.9 118 11-131 17-152 (720)
269 PRK09866 hypothetical protein; 99.4 6.5E-12 1.4E-16 104.8 16.1 107 62-169 230-350 (741)
270 KOG1532 GTPase XAB1, interacts 99.4 3.4E-13 7.5E-18 100.7 7.7 164 8-173 14-265 (366)
271 KOG1145 Mitochondrial translat 99.4 3E-12 6.5E-17 103.9 13.0 151 12-169 152-313 (683)
272 cd01853 Toc34_like Toc34-like 99.4 2.3E-12 4.9E-17 98.2 11.0 119 10-130 28-162 (249)
273 COG4917 EutP Ethanolamine util 99.4 5.3E-13 1.2E-17 87.9 6.3 136 15-169 3-143 (148)
274 COG1126 GlnQ ABC-type polar am 99.4 1.3E-12 2.9E-17 94.7 9.0 55 152-213 134-188 (240)
275 KOG0090 Signal recognition par 99.4 1.6E-12 3.5E-17 93.6 9.3 112 14-130 39-158 (238)
276 COG0480 FusA Translation elong 99.4 1E-12 2.2E-17 112.2 9.3 135 10-147 7-158 (697)
277 TIGR00991 3a0901s02IAP34 GTP-b 99.4 3.2E-12 7E-17 98.9 11.0 119 10-130 35-166 (313)
278 PF04548 AIG1: AIG1 family; I 99.4 1.4E-11 3.1E-16 92.1 12.6 161 14-176 1-190 (212)
279 PLN00116 translation elongatio 99.4 1.9E-12 4.2E-17 114.2 8.2 118 10-130 16-163 (843)
280 cd00066 G-alpha G protein alph 99.4 1.6E-11 3.4E-16 97.1 12.3 73 58-130 157-241 (317)
281 KOG1490 GTP-binding protein CR 99.3 2.7E-12 5.8E-17 103.2 7.6 160 11-172 166-341 (620)
282 COG1120 FepC ABC-type cobalami 99.3 1.8E-12 3.9E-17 97.9 5.6 55 149-210 133-187 (258)
283 PTZ00416 elongation factor 2; 99.3 4.2E-12 9.2E-17 111.9 8.5 116 12-130 18-157 (836)
284 COG1217 TypA Predicted membran 99.3 4.9E-11 1.1E-15 95.3 13.5 156 13-171 5-194 (603)
285 PRK13768 GTPase; Provisional 99.3 9.3E-12 2E-16 95.3 9.2 111 63-173 98-248 (253)
286 cd01882 BMS1 Bms1. Bms1 is an 99.3 4.6E-11 1E-15 90.0 12.2 140 10-160 36-184 (225)
287 KOG3886 GTP-binding protein [S 99.3 5.9E-12 1.3E-16 91.9 6.9 161 13-175 4-181 (295)
288 smart00275 G_alpha G protein a 99.3 2.2E-11 4.8E-16 97.0 10.8 72 59-130 181-264 (342)
289 COG3638 ABC-type phosphate/pho 99.3 1.9E-12 4.1E-17 95.1 4.1 58 146-210 139-196 (258)
290 KOG3905 Dynein light intermedi 99.3 7E-11 1.5E-15 90.5 12.6 158 13-173 52-291 (473)
291 KOG0458 Elongation factor 1 al 99.3 8.6E-11 1.9E-15 96.2 13.1 157 6-162 170-372 (603)
292 COG2895 CysN GTPases - Sulfate 99.3 4.8E-11 1E-15 92.3 11.0 150 10-161 3-192 (431)
293 TIGR00101 ureG urease accessor 99.3 1.1E-10 2.4E-15 86.2 12.3 101 62-172 92-196 (199)
294 COG0411 LivG ABC-type branched 99.3 4.7E-12 1E-16 93.6 4.5 167 13-210 30-198 (250)
295 smart00010 small_GTPase Small 99.3 7.1E-12 1.5E-16 85.5 5.0 113 14-161 1-115 (124)
296 PTZ00258 GTP-binding protein; 99.3 1.8E-10 4E-15 92.5 13.6 84 11-96 19-126 (390)
297 KOG1707 Predicted Ras related/ 99.3 4.4E-10 9.5E-15 92.2 15.5 164 9-177 421-587 (625)
298 PRK07560 elongation factor EF- 99.2 2.7E-11 5.9E-16 105.7 7.9 116 12-130 19-152 (731)
299 PRK09435 membrane ATPase/prote 99.2 1.6E-10 3.6E-15 91.1 11.3 102 61-172 148-260 (332)
300 PRK14845 translation initiatio 99.2 1.8E-10 3.9E-15 102.3 12.7 100 64-169 528-670 (1049)
301 PF05783 DLIC: Dynein light in 99.2 6.8E-10 1.5E-14 91.4 15.1 164 9-175 21-267 (472)
302 PF05049 IIGP: Interferon-indu 99.2 2.3E-11 5E-16 96.6 6.2 157 12-174 34-220 (376)
303 COG1136 SalX ABC-type antimicr 99.2 1.9E-11 4E-16 90.6 4.7 52 152-210 140-191 (226)
304 PF03029 ATP_bind_1: Conserved 99.2 2.4E-11 5.2E-16 92.0 5.2 107 63-171 92-236 (238)
305 TIGR00073 hypB hydrogenase acc 99.2 4.6E-10 1E-14 83.7 11.7 152 9-170 18-205 (207)
306 TIGR00157 ribosome small subun 99.2 1.8E-10 3.8E-15 87.9 9.2 95 73-169 24-120 (245)
307 TIGR02836 spore_IV_A stage IV 99.2 1.1E-09 2.5E-14 87.3 13.7 142 13-156 17-219 (492)
308 COG1116 TauB ABC-type nitrate/ 99.2 1.8E-10 3.9E-15 85.8 8.6 47 159-210 133-179 (248)
309 COG2884 FtsE Predicted ATPase 99.2 3.1E-10 6.8E-15 80.9 8.9 53 153-212 136-188 (223)
310 COG4108 PrfC Peptide chain rel 99.1 2.3E-10 5E-15 90.9 8.7 134 13-151 12-167 (528)
311 COG1135 AbcC ABC-type metal io 99.1 2.9E-10 6.3E-15 86.9 8.8 154 15-210 34-190 (339)
312 PF00735 Septin: Septin; Inte 99.1 1.4E-09 3E-14 84.4 12.0 116 13-131 4-156 (281)
313 COG1122 CbiO ABC-type cobalt t 99.1 1.8E-10 3.8E-15 86.8 6.6 55 149-210 133-187 (235)
314 COG1124 DppF ABC-type dipeptid 99.1 1.7E-10 3.6E-15 85.4 6.1 47 159-210 144-190 (252)
315 COG1131 CcmA ABC-type multidru 99.1 1.9E-09 4.1E-14 84.4 11.9 53 152-211 134-186 (293)
316 KOG0461 Selenocysteine-specifi 99.1 3E-09 6.4E-14 82.4 12.4 159 11-173 5-194 (522)
317 COG0410 LivF ABC-type branched 99.1 1.8E-09 3.9E-14 79.4 10.5 48 158-210 138-185 (237)
318 KOG3887 Predicted small GTPase 99.1 1.1E-09 2.4E-14 80.7 9.2 160 13-174 27-204 (347)
319 smart00053 DYNc Dynamin, GTPas 99.1 1.1E-09 2.4E-14 82.7 9.3 69 62-132 125-207 (240)
320 TIGR00750 lao LAO/AO transport 99.1 1.3E-09 2.9E-14 85.7 9.5 101 61-171 126-237 (300)
321 KOG0705 GTPase-activating prot 99.0 3.9E-10 8.4E-15 91.8 6.5 157 10-173 27-190 (749)
322 PF00350 Dynamin_N: Dynamin fa 99.0 1.5E-09 3.3E-14 78.1 8.7 63 63-127 102-168 (168)
323 COG3840 ThiQ ABC-type thiamine 99.0 1.4E-09 3E-14 77.2 7.6 47 159-210 132-178 (231)
324 cd03222 ABC_RNaseL_inhibitor T 99.0 6.4E-09 1.4E-13 75.3 10.7 46 159-209 74-119 (177)
325 KOG0082 G-protein alpha subuni 99.0 1.6E-09 3.5E-14 85.1 8.1 119 55-173 188-345 (354)
326 COG5257 GCD11 Translation init 99.0 5.6E-09 1.2E-13 80.1 10.5 163 10-173 7-203 (415)
327 TIGR00993 3a0901s04IAP86 chlor 99.0 7E-09 1.5E-13 87.3 11.9 119 12-131 117-250 (763)
328 COG1117 PstB ABC-type phosphat 99.0 1.9E-09 4.2E-14 78.3 7.5 54 152-210 145-198 (253)
329 PRK09601 GTP-binding protein Y 99.0 1.7E-09 3.6E-14 86.1 7.8 81 14-96 3-107 (364)
330 COG3842 PotA ABC-type spermidi 99.0 9.6E-10 2.1E-14 86.9 6.1 57 147-210 129-185 (352)
331 KOG0465 Mitochondrial elongati 99.0 3.7E-10 7.9E-15 93.0 3.7 199 13-220 39-255 (721)
332 KOG0468 U5 snRNP-specific prot 99.0 2.6E-09 5.5E-14 89.0 8.6 115 11-129 126-261 (971)
333 COG0050 TufB GTPases - transla 99.0 5.6E-09 1.2E-13 79.2 9.7 145 8-155 7-176 (394)
334 cd03293 ABC_NrtD_SsuB_transpor 99.0 2.1E-08 4.6E-13 75.5 13.1 45 159-208 134-178 (220)
335 KOG1144 Translation initiation 99.0 4.9E-09 1.1E-13 88.3 10.3 159 10-171 472-686 (1064)
336 COG3276 SelB Selenocysteine-sp 99.0 8.9E-09 1.9E-13 82.3 11.1 155 15-171 2-161 (447)
337 cd01900 YchF YchF subfamily. 99.0 1.4E-09 3.1E-14 83.7 6.5 79 16-96 1-103 (274)
338 COG1703 ArgK Putative periplas 99.0 4.4E-09 9.6E-14 80.2 9.0 102 61-172 143-254 (323)
339 COG3839 MalK ABC-type sugar tr 99.0 5.8E-09 1.3E-13 82.1 9.9 51 152-209 131-181 (338)
340 PRK13537 nodulation ABC transp 99.0 1.6E-08 3.4E-13 79.8 12.5 47 159-210 141-187 (306)
341 TIGR01166 cbiO cobalt transpor 99.0 3.8E-09 8.2E-14 77.7 8.2 47 159-210 130-176 (190)
342 cd01858 NGP_1 NGP-1. Autoanti 99.0 2.8E-09 6E-14 76.0 7.2 56 12-71 101-156 (157)
343 KOG0464 Elongation factor G [T 98.9 1.2E-09 2.7E-14 86.5 5.5 131 14-147 38-184 (753)
344 PRK13536 nodulation factor exp 98.9 1.8E-08 3.9E-13 80.5 12.2 47 159-210 175-221 (340)
345 cd04178 Nucleostemin_like Nucl 98.9 3E-09 6.6E-14 76.7 7.1 56 12-71 116-171 (172)
346 KOG2655 Septin family protein 98.9 4.9E-08 1.1E-12 77.0 14.2 140 13-155 21-200 (366)
347 COG1137 YhbG ABC-type (unclass 98.9 3.9E-10 8.4E-15 81.1 2.2 49 158-211 141-189 (243)
348 COG3845 ABC-type uncharacteriz 98.9 4.3E-09 9.3E-14 85.2 8.2 70 136-212 119-191 (501)
349 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 2.8E-09 6.2E-14 74.5 6.2 54 15-72 85-138 (141)
350 TIGR01188 drrA daunorubicin re 98.9 5.9E-09 1.3E-13 82.2 8.7 47 159-210 127-173 (302)
351 COG0396 sufC Cysteine desulfur 98.9 2.1E-08 4.5E-13 73.8 10.7 48 159-211 147-194 (251)
352 COG1127 Ttg2A ABC-type transpo 98.9 4.5E-09 9.8E-14 77.8 7.3 55 149-210 140-194 (263)
353 COG0012 Predicted GTPase, prob 98.9 4.9E-08 1.1E-12 76.9 13.4 82 13-96 2-108 (372)
354 COG1119 ModF ABC-type molybden 98.9 8.3E-09 1.8E-13 76.6 8.3 46 160-210 175-220 (257)
355 PRK13538 cytochrome c biogenes 98.9 3.9E-08 8.3E-13 73.2 12.1 46 159-209 132-177 (204)
356 TIGR03864 PQQ_ABC_ATP ABC tran 98.9 4.8E-08 1E-12 74.3 12.7 45 159-208 135-179 (236)
357 TIGR00960 3a0501s02 Type II (G 98.9 2.7E-08 5.9E-13 74.6 11.3 47 159-210 141-187 (216)
358 TIGR01189 ccmA heme ABC export 98.9 5.7E-08 1.2E-12 71.9 12.8 47 159-210 130-176 (198)
359 cd03266 ABC_NatA_sodium_export 98.9 1.1E-08 2.3E-13 77.0 9.0 47 159-210 139-185 (218)
360 COG4555 NatA ABC-type Na+ tran 98.9 8.8E-09 1.9E-13 74.3 7.8 45 162-211 139-183 (245)
361 cd03269 ABC_putative_ATPase Th 98.9 2.8E-08 6.1E-13 74.2 11.0 46 159-209 131-176 (210)
362 cd03230 ABC_DR_subfamily_A Thi 98.9 4.6E-08 9.9E-13 70.9 11.7 47 159-210 98-144 (173)
363 KOG1547 Septin CDC10 and relat 98.9 4E-08 8.7E-13 72.6 11.3 153 13-169 46-240 (336)
364 cd03215 ABC_Carb_Monos_II This 98.9 1.6E-08 3.4E-13 73.9 9.3 46 159-209 107-152 (182)
365 PRK13651 cobalt transporter AT 98.9 8.3E-09 1.8E-13 81.3 8.3 47 159-210 168-214 (305)
366 PRK13631 cbiO cobalt transport 98.9 8.5E-09 1.8E-13 81.8 8.4 48 158-210 178-225 (320)
367 TIGR01288 nodI ATP-binding ABC 98.9 4.3E-08 9.2E-13 77.4 12.3 47 159-210 138-184 (303)
368 COG2274 SunT ABC-type bacterio 98.9 3.4E-09 7.4E-14 91.5 6.6 46 159-209 612-657 (709)
369 cd03218 ABC_YhbG The ABC trans 98.9 4.9E-08 1.1E-12 74.1 12.2 47 159-210 136-182 (232)
370 cd03261 ABC_Org_Solvent_Resist 98.9 4.3E-08 9.2E-13 74.6 11.8 46 159-209 139-184 (235)
371 PF03308 ArgK: ArgK protein; 98.9 1.4E-08 3E-13 76.4 8.9 97 62-170 122-228 (266)
372 cd03259 ABC_Carb_Solutes_like 98.9 2.4E-08 5.2E-13 74.8 10.3 46 159-209 133-178 (213)
373 TIGR03608 L_ocin_972_ABC putat 98.9 3.4E-08 7.3E-13 73.6 11.1 46 159-209 137-182 (206)
374 cd03225 ABC_cobalt_CbiO_domain 98.9 1.2E-08 2.6E-13 76.3 8.6 47 159-210 137-183 (211)
375 COG4161 ArtP ABC-type arginine 98.9 4.2E-09 9E-14 73.4 5.5 49 159-212 144-192 (242)
376 TIGR03265 PhnT2 putative 2-ami 98.9 2.3E-08 5E-13 80.3 10.7 46 159-209 137-182 (353)
377 cd03226 ABC_cobalt_CbiO_domain 98.9 7E-08 1.5E-12 71.8 12.6 47 159-210 129-175 (205)
378 TIGR02673 FtsE cell division A 98.9 5.2E-08 1.1E-12 73.0 11.8 47 159-210 140-186 (214)
379 PRK13637 cbiO cobalt transport 98.9 1.8E-08 4E-13 78.8 9.7 46 159-209 147-192 (287)
380 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.9 4.5E-08 9.7E-13 68.7 10.7 42 161-207 75-116 (144)
381 cd03263 ABC_subfamily_A The AB 98.9 5.7E-08 1.2E-12 73.1 11.9 46 159-209 136-181 (220)
382 cd03231 ABC_CcmA_heme_exporter 98.9 6.7E-08 1.5E-12 71.7 12.2 47 159-210 128-174 (201)
383 cd03265 ABC_DrrA DrrA is the A 98.9 2.9E-08 6.2E-13 74.7 10.3 46 159-209 134-179 (220)
384 cd03264 ABC_drug_resistance_li 98.9 4.8E-08 1E-12 73.1 11.4 46 159-209 133-178 (211)
385 cd03216 ABC_Carb_Monos_I This 98.9 1.7E-08 3.7E-13 72.3 8.6 46 159-209 85-130 (163)
386 PRK10619 histidine/lysine/argi 98.9 8.7E-08 1.9E-12 73.9 13.1 47 159-210 155-201 (257)
387 COG0378 HypB Ni2+-binding GTPa 98.9 4.9E-08 1.1E-12 70.1 10.7 53 119-171 144-200 (202)
388 TIGR03258 PhnT 2-aminoethylpho 98.9 2.6E-08 5.6E-13 80.2 10.5 47 159-210 140-186 (362)
389 cd03237 ABC_RNaseL_inhibitor_d 98.9 2.4E-08 5.3E-13 76.3 9.7 46 159-209 118-163 (246)
390 cd03292 ABC_FtsE_transporter F 98.9 5.3E-08 1.1E-12 73.0 11.3 47 159-210 139-185 (214)
391 PRK13638 cbiO cobalt transport 98.9 2.4E-08 5.2E-13 77.6 9.7 47 159-210 139-185 (271)
392 PRK11432 fbpC ferric transport 98.9 3.3E-08 7.3E-13 79.3 10.7 46 159-209 139-184 (351)
393 PRK11650 ugpC glycerol-3-phosp 98.8 2.5E-08 5.3E-13 80.2 9.9 46 159-209 137-182 (356)
394 cd03301 ABC_MalK_N The N-termi 98.8 1E-07 2.2E-12 71.4 12.6 46 159-209 133-178 (213)
395 TIGR03740 galliderm_ABC gallid 98.8 1.1E-07 2.3E-12 71.8 12.8 47 159-210 127-173 (223)
396 cd03268 ABC_BcrA_bacitracin_re 98.8 6.9E-08 1.5E-12 72.0 11.6 47 159-210 129-175 (208)
397 PRK11264 putative amino-acid A 98.8 8.8E-08 1.9E-12 73.5 12.4 47 159-210 147-193 (250)
398 PRK10908 cell division protein 98.8 7.9E-08 1.7E-12 72.5 12.0 46 159-209 140-185 (222)
399 cd03233 ABC_PDR_domain1 The pl 98.8 8.4E-08 1.8E-12 71.2 11.9 46 159-209 121-166 (202)
400 cd03267 ABC_NatA_like Similar 98.8 1.1E-07 2.5E-12 72.3 12.9 46 159-209 156-201 (236)
401 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.8 5.1E-08 1.1E-12 73.3 10.8 46 159-209 143-188 (218)
402 PRK09452 potA putrescine/sperm 98.8 3E-08 6.5E-13 80.1 10.0 47 159-210 147-193 (375)
403 COG4598 HisP ABC-type histidin 98.8 4.8E-09 1E-13 74.4 4.7 48 159-211 155-202 (256)
404 PRK11153 metN DL-methionine tr 98.8 6.4E-08 1.4E-12 77.6 11.9 46 159-209 143-188 (343)
405 cd03258 ABC_MetN_methionine_tr 98.8 6.5E-08 1.4E-12 73.5 11.4 46 159-209 143-188 (233)
406 cd03229 ABC_Class3 This class 98.8 4.2E-08 9.2E-13 71.4 9.9 47 159-210 103-149 (178)
407 TIGR03522 GldA_ABC_ATP gliding 98.8 7.6E-08 1.7E-12 75.9 12.0 51 152-209 131-181 (301)
408 PRK13543 cytochrome c biogenes 98.8 1.1E-07 2.4E-12 71.2 12.4 47 159-210 140-186 (214)
409 PRK13647 cbiO cobalt transport 98.8 2.2E-08 4.9E-13 77.8 8.8 47 159-210 141-187 (274)
410 PRK11607 potG putrescine trans 98.8 3.7E-08 8E-13 79.7 10.3 46 159-209 152-197 (377)
411 COG5019 CDC3 Septin family pro 98.8 3.1E-07 6.6E-12 72.1 14.9 137 12-151 22-200 (373)
412 PRK10463 hydrogenase nickel in 98.8 1.4E-08 2.9E-13 78.4 7.3 54 117-170 230-287 (290)
413 cd01855 YqeH YqeH. YqeH is an 98.8 8.2E-09 1.8E-13 75.9 6.0 56 13-71 127-189 (190)
414 PRK13643 cbiO cobalt transport 98.8 2.9E-08 6.4E-13 77.7 9.4 47 159-210 147-193 (288)
415 cd03235 ABC_Metallic_Cations A 98.8 3E-08 6.6E-13 74.2 9.1 47 159-210 135-181 (213)
416 TIGR02211 LolD_lipo_ex lipopro 98.8 6.6E-08 1.4E-12 72.8 10.9 46 159-209 144-189 (221)
417 PRK09536 btuD corrinoid ABC tr 98.8 1.4E-08 3E-13 82.6 7.6 47 159-210 142-188 (402)
418 PRK11000 maltose/maltodextrin 98.8 4.1E-08 8.8E-13 79.4 10.3 46 159-209 136-181 (369)
419 PRK11629 lolD lipoprotein tran 98.8 1E-07 2.3E-12 72.3 11.9 46 159-209 148-193 (233)
420 PRK13652 cbiO cobalt transport 98.8 4E-08 8.7E-13 76.6 9.7 46 159-209 140-185 (277)
421 PRK13641 cbiO cobalt transport 98.8 3.2E-08 6.9E-13 77.5 9.1 47 159-210 148-194 (287)
422 cd03262 ABC_HisP_GlnQ_permease 98.8 9.4E-08 2E-12 71.6 11.3 47 159-210 138-184 (213)
423 cd01856 YlqF YlqF. Proteins o 98.8 1.9E-08 4E-13 72.7 7.2 58 11-72 113-170 (171)
424 cd03214 ABC_Iron-Siderophores_ 98.8 2E-08 4.3E-13 73.2 7.4 46 159-209 100-145 (180)
425 TIGR02314 ABC_MetN D-methionin 98.8 3.8E-08 8.2E-13 78.6 9.5 52 152-210 138-189 (343)
426 TIGR02142 modC_ABC molybdenum 98.8 1.6E-07 3.5E-12 75.6 13.3 47 159-210 134-180 (354)
427 cd03219 ABC_Mj1267_LivG_branch 98.8 8.9E-08 1.9E-12 72.9 11.2 46 159-209 146-191 (236)
428 PRK11247 ssuB aliphatic sulfon 98.8 8.7E-08 1.9E-12 73.8 11.2 45 159-208 136-180 (257)
429 cd03297 ABC_ModC_molybdenum_tr 98.8 1.3E-07 2.7E-12 70.9 11.7 46 159-209 134-179 (214)
430 PRK11248 tauB taurine transpor 98.8 1.5E-07 3.3E-12 72.4 12.3 45 159-208 131-175 (255)
431 COG0444 DppD ABC-type dipeptid 98.8 6.1E-08 1.3E-12 75.0 10.0 46 159-209 156-201 (316)
432 PRK13646 cbiO cobalt transport 98.8 1.5E-08 3.3E-13 79.2 6.8 46 159-209 148-193 (286)
433 cd03246 ABCC_Protease_Secretio 98.8 3.5E-08 7.7E-13 71.4 8.3 47 159-210 99-145 (173)
434 PRK13540 cytochrome c biogenes 98.8 1.6E-07 3.4E-12 69.7 11.9 46 159-209 130-175 (200)
435 cd03295 ABC_OpuCA_Osmoprotecti 98.8 1.2E-07 2.7E-12 72.4 11.6 46 159-209 138-183 (242)
436 PRK10895 lipopolysaccharide AB 98.8 1E-07 2.2E-12 72.8 11.2 47 159-210 140-186 (241)
437 COG4619 ABC-type uncharacteriz 98.8 3.6E-08 7.8E-13 69.2 7.7 45 159-208 136-180 (223)
438 cd03257 ABC_NikE_OppD_transpor 98.8 2.5E-08 5.4E-13 75.5 7.7 46 159-209 148-193 (228)
439 TIGR01186 proV glycine betaine 98.8 5.4E-08 1.2E-12 78.3 9.9 46 159-209 132-177 (363)
440 COG0488 Uup ATPase components 98.8 7.5E-08 1.6E-12 80.7 11.0 61 142-209 139-201 (530)
441 PRK13634 cbiO cobalt transport 98.8 3E-08 6.5E-13 77.7 8.2 46 159-209 148-193 (290)
442 PRK13636 cbiO cobalt transport 98.8 3.7E-08 8E-13 77.0 8.7 46 159-209 144-189 (283)
443 PRK09563 rbgA GTPase YlqF; Rev 98.8 3E-08 6.5E-13 77.6 8.1 59 11-73 119-177 (287)
444 TIGR02868 CydC thiol reductant 98.8 1.2E-08 2.7E-13 86.5 6.5 45 159-208 473-517 (529)
445 cd03260 ABC_PstB_phosphate_tra 98.8 2.3E-08 5E-13 75.6 7.3 47 159-210 144-190 (227)
446 TIGR03415 ABC_choXWV_ATP choli 98.8 1.1E-07 2.3E-12 77.0 11.5 46 159-209 167-212 (382)
447 cd03224 ABC_TM1139_LivF_branch 98.8 5.6E-08 1.2E-12 73.3 9.3 46 159-209 135-180 (222)
448 cd03238 ABC_UvrA The excision 98.8 6.9E-08 1.5E-12 69.9 9.2 45 160-209 91-137 (176)
449 KOG1486 GTP-binding protein DR 98.8 4.3E-07 9.3E-12 67.8 13.4 88 13-102 62-156 (364)
450 PRK11831 putative ABC transpor 98.8 1.8E-07 4E-12 72.6 12.3 46 159-209 146-191 (269)
451 PRK10418 nikD nickel transport 98.8 6.5E-08 1.4E-12 74.4 9.7 46 159-209 143-188 (254)
452 PRK13539 cytochrome c biogenes 98.8 1.1E-07 2.3E-12 71.0 10.5 47 159-210 130-176 (207)
453 PRK11022 dppD dipeptide transp 98.8 1.2E-07 2.5E-12 75.6 11.3 46 159-209 156-201 (326)
454 COG4148 ModC ABC-type molybdat 98.8 4E-08 8.6E-13 74.4 8.0 47 159-210 131-177 (352)
455 TIGR02324 CP_lyasePhnL phospho 98.8 1.1E-07 2.4E-12 71.8 10.7 47 159-210 152-198 (224)
456 PRK13645 cbiO cobalt transport 98.8 2.8E-08 6.1E-13 77.9 7.7 46 159-209 153-198 (289)
457 TIGR01184 ntrCD nitrate transp 98.8 1.9E-07 4.2E-12 70.8 11.9 46 159-209 117-162 (230)
458 PRK13644 cbiO cobalt transport 98.8 4.8E-08 1E-12 76.0 8.9 47 159-210 139-185 (274)
459 PRK11124 artP arginine transpo 98.8 3.4E-08 7.3E-13 75.5 7.8 46 159-209 144-189 (242)
460 TIGR03596 GTPase_YlqF ribosome 98.8 2.5E-08 5.5E-13 77.6 7.2 59 11-73 116-174 (276)
461 PRK11300 livG leucine/isoleuci 98.8 1.4E-07 3E-12 72.7 11.2 46 159-209 156-201 (255)
462 cd03294 ABC_Pro_Gly_Bertaine T 98.8 9.6E-08 2.1E-12 74.1 10.4 46 159-209 163-208 (269)
463 PRK13635 cbiO cobalt transport 98.8 3.2E-08 6.9E-13 77.2 7.8 46 159-209 143-188 (279)
464 PRK10851 sulfate/thiosulfate t 98.8 9.5E-08 2.1E-12 76.8 10.6 47 159-210 139-185 (353)
465 cd03296 ABC_CysA_sulfate_impor 98.8 1.2E-07 2.6E-12 72.3 10.8 46 159-209 139-184 (239)
466 PRK13541 cytochrome c biogenes 98.8 2.6E-07 5.7E-12 68.2 12.2 45 159-208 126-170 (195)
467 TIGR02770 nickel_nikD nickel i 98.8 5.1E-08 1.1E-12 73.9 8.6 46 159-209 128-173 (230)
468 cd03298 ABC_ThiQ_thiamine_tran 98.8 1.8E-07 3.9E-12 69.9 11.4 46 159-209 131-176 (211)
469 TIGR02982 heterocyst_DevA ABC 98.8 1.6E-07 3.4E-12 70.7 11.1 46 159-209 144-189 (220)
470 COG1125 OpuBA ABC-type proline 98.8 1.7E-08 3.6E-13 75.5 5.5 51 152-209 133-183 (309)
471 COG0488 Uup ATPase components 98.7 1.5E-07 3.3E-12 78.9 11.7 50 151-207 436-485 (530)
472 PRK13650 cbiO cobalt transport 98.7 3.3E-08 7.2E-13 77.1 7.4 46 159-209 143-188 (279)
473 cd03232 ABC_PDR_domain2 The pl 98.7 4.8E-08 1E-12 71.9 7.9 46 159-209 111-156 (192)
474 COG1129 MglA ABC-type sugar tr 98.7 7.1E-08 1.5E-12 79.4 9.5 50 159-213 148-197 (500)
475 TIGR00972 3a0107s01c2 phosphat 98.7 3E-07 6.4E-12 70.5 12.5 46 159-209 147-192 (247)
476 cd03223 ABCD_peroxisomal_ALDP 98.7 2.2E-07 4.8E-12 66.8 11.1 44 159-207 94-137 (166)
477 PRK09493 glnQ glutamine ABC tr 98.7 2.4E-07 5.1E-12 70.7 11.8 46 159-209 139-184 (240)
478 PRK10584 putative ABC transpor 98.7 1.8E-07 4E-12 70.8 11.1 46 159-209 149-194 (228)
479 PRK11144 modC molybdate transp 98.7 2.7E-07 5.7E-12 74.3 12.5 46 159-209 131-176 (352)
480 TIGR02769 nickel_nikE nickel i 98.7 5.6E-08 1.2E-12 75.3 8.4 46 159-209 153-198 (265)
481 PRK14241 phosphate transporter 98.7 3.8E-07 8.1E-12 70.4 12.9 46 159-209 151-196 (258)
482 TIGR03410 urea_trans_UrtE urea 98.7 9.2E-08 2E-12 72.5 9.3 46 159-209 134-179 (230)
483 cd03300 ABC_PotA_N PotA is an 98.7 4.2E-07 9.1E-12 69.0 12.9 46 159-209 133-178 (232)
484 PRK13649 cbiO cobalt transport 98.7 2.4E-07 5.2E-12 72.3 11.9 47 159-210 148-194 (280)
485 TIGR01277 thiQ thiamine ABC tr 98.7 4.1E-07 8.9E-12 68.1 12.7 46 159-209 131-176 (213)
486 PF00503 G-alpha: G-protein al 98.7 3.6E-08 7.9E-13 80.4 7.5 70 60-129 234-315 (389)
487 KOG0410 Predicted GTP binding 98.7 1.8E-08 3.8E-13 77.6 5.1 158 7-175 172-344 (410)
488 COG1123 ATPase components of v 98.7 1.9E-07 4.2E-12 77.4 11.5 46 159-209 157-202 (539)
489 cd01855 YqeH YqeH. YqeH is an 98.7 7.8E-08 1.7E-12 70.7 8.5 107 75-186 24-139 (190)
490 PRK14247 phosphate ABC transpo 98.7 4.3E-07 9.4E-12 69.7 12.8 46 159-209 149-194 (250)
491 COG1161 Predicted GTPases [Gen 98.7 3.2E-08 7E-13 78.4 6.7 59 12-74 131-189 (322)
492 PRK14250 phosphate ABC transpo 98.7 5.3E-08 1.1E-12 74.4 7.7 46 159-209 134-179 (241)
493 cd01859 MJ1464 MJ1464. This f 98.7 5E-08 1.1E-12 69.4 7.0 56 12-71 100-155 (156)
494 cd03299 ABC_ModC_like Archeal 98.7 4.2E-07 9E-12 69.2 12.5 46 159-209 132-177 (235)
495 PRK09544 znuC high-affinity zi 98.7 2.5E-07 5.5E-12 71.0 11.3 46 159-209 123-168 (251)
496 PRK15056 manganese/iron transp 98.7 1.5E-07 3.3E-12 73.1 10.3 47 159-210 145-191 (272)
497 KOG1143 Predicted translation 98.7 1.3E-07 2.7E-12 74.3 9.6 160 3-167 159-383 (591)
498 PRK15079 oligopeptide ABC tran 98.7 1.8E-07 3.8E-12 74.6 10.7 46 159-209 164-209 (331)
499 COG4988 CydD ABC-type transpor 98.7 2.5E-08 5.5E-13 82.5 5.9 48 159-211 459-506 (559)
500 PRK14254 phosphate ABC transpo 98.7 7.6E-07 1.6E-11 69.7 14.0 47 159-210 183-229 (285)
No 1
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.1e-37 Score=233.93 Aligned_cols=217 Identities=99% Similarity=1.560 Sum_probs=192.9
Q ss_pred CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (221)
|++|+.+...++.+||+++|.+|||||||+++++.+.+...+.++.|.++....+..++..+.+.+|||+|++.+...+.
T Consensus 1 ~~~~~~~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 80 (219)
T PLN03071 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (219)
T ss_pred CCCcccCCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence 78988888889999999999999999999999999999888899999998888887888889999999999999999999
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 160 (221)
.+++.++++++|||++++.+|..+..|+..+....++.|+++|+||+|+..+....+...++...++.++++||++|.|+
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence 99999999999999999999999999999998777789999999999997655555555677777899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCCCCCC
Q 027593 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDD 217 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (221)
+++|.+|++.+........++.|...++....+....+..++.++.+....+.++++
T Consensus 161 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (219)
T PLN03071 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDDDD 217 (219)
T ss_pred HHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999999998877777778888888888888889999998888887766655554
No 2
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=9.9e-37 Score=228.74 Aligned_cols=212 Identities=78% Similarity=1.284 Sum_probs=189.0
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCcc
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (221)
...++.+||+++|++|||||||+++++.+.+...+.++.+.++....+..+++.+.+.+|||+|+..+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 35677899999999999999999988999988888999999888888888888999999999999999888888999999
Q ss_pred EEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
++++|||+++..+|..+..|...+.....+.|+++++||+|+.++....+...+....++.++++|+++|.|++++|.+|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~i 163 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988877777899999999999976555555556677778899999999999999999999
Q ss_pred HHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCCCCCCcc
Q 027593 168 ARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDA 219 (221)
Q Consensus 168 ~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (221)
++++..+|.++++|||+..+.+..+|+...+...+.+++++.-++|++||++
T Consensus 164 a~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (215)
T PTZ00132 164 ARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAANVPLPDDDDDL 215 (215)
T ss_pred HHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhhCCCCCCcCCC
Confidence 9999999999999999944444449999999999999999888898888763
No 3
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-36 Score=214.31 Aligned_cols=174 Identities=33% Similarity=0.564 Sum_probs=159.2
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
.-.+-+||.|+|.+|+|||+|+.||..+.|...+..|+|++....+..+++..+.+++|||+||++|++....|++++++
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCce-EEEeecCCCCChHHHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQ-YYEISAKSNYNFEKPF 164 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~-~~~~s~~~~~~i~~~~ 164 (221)
+|+|||+++..||.++..|+.++.++. .+.|.++|+||||+.+ +.+..+ ...++..++++ ++++||+++.+++++|
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F 164 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAF 164 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHH
Confidence 999999999999999999999999986 4679999999999976 445554 44889999999 9999999999999999
Q ss_pred HHHHHHHhCCCCCccccC
Q 027593 165 LYLARKLAGDPNLHFVES 182 (221)
Q Consensus 165 ~~l~~~l~~~~~~~~~~e 182 (221)
..|+..+..+.......+
T Consensus 165 ~~la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 165 LTLAKELKQRKGLHVKWS 182 (205)
T ss_pred HHHHHHHHHhcccCCCCC
Confidence 999999988766554444
No 4
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=200.15 Aligned_cols=169 Identities=31% Similarity=0.540 Sum_probs=155.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.-..+||+++|.+|+|||+|+.+|+.+.+.+....++|++...+.+.+++....+.+|||+|+++|+.+...|++.++++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 44569999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCc-cccc-HHHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 165 (221)
|+|||++.+.+|.++..|+.++.-++. +.-.++|+||.|.+. +.+. .+.+.+++.+++.|+++||++.++++.+|.
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe 167 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE 167 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence 999999999999999999999988864 455679999999873 4443 456799999999999999999999999999
Q ss_pred HHHHHHhCCCCCc
Q 027593 166 YLARKLAGDPNLH 178 (221)
Q Consensus 166 ~l~~~l~~~~~~~ 178 (221)
.++.++++.|.+.
T Consensus 168 elveKIi~tp~l~ 180 (209)
T KOG0080|consen 168 ELVEKIIETPSLW 180 (209)
T ss_pred HHHHHHhcCcchh
Confidence 9999999988765
No 5
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-35 Score=205.58 Aligned_cols=165 Identities=33% Similarity=0.601 Sum_probs=151.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+|+|..++|||||+-||..+.|.....+|+|..+..+++.++...+.+.+|||+|+++|.++.++|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|||+++.+||..++.|+..+....+ +.-+.+|+||+|+.. +.+.. +...++...+..|+++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999988754 556678999999987 55544 5568899999999999999999999999999
Q ss_pred HHHHhCCC
Q 027593 168 ARKLAGDP 175 (221)
Q Consensus 168 ~~~l~~~~ 175 (221)
++.+....
T Consensus 163 a~~lp~~~ 170 (200)
T KOG0092|consen 163 AEKLPCSD 170 (200)
T ss_pred HHhccCcc
Confidence 99987644
No 6
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-34 Score=206.10 Aligned_cols=168 Identities=30% Similarity=0.577 Sum_probs=156.0
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
...+-+||+++|.+|||||+++.+|..+.+...+..++|++....++..++..+.+++|||+||+++......|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 165 (221)
+++|||+++..||+++..|+..+.++.+ ..|.++|+||+|+.. +++..+ ..+++..+++.|+++||++|.||.++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 9999999999999999999999999864 899999999999986 555555 4588999999999999999999999999
Q ss_pred HHHHHHhCCCC
Q 027593 166 YLARKLAGDPN 176 (221)
Q Consensus 166 ~l~~~l~~~~~ 176 (221)
.|++.+..+..
T Consensus 168 ~La~~i~~k~~ 178 (207)
T KOG0078|consen 168 SLARDILQKLE 178 (207)
T ss_pred HHHHHHHhhcc
Confidence 99999986443
No 7
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-34 Score=202.00 Aligned_cols=170 Identities=31% Similarity=0.554 Sum_probs=153.6
Q ss_pred CCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccccc
Q 027593 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI 84 (221)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 84 (221)
.....+.+++||+++|..++||||||++|+.+.+...|..|+|++.-..++.+.+..+++++|||+||++|+.+...|++
T Consensus 14 ~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~R 93 (221)
T KOG0094|consen 14 ATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 93 (221)
T ss_pred cccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhcc
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCCh
Q 027593 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i 160 (221)
++.++|+|||+++..||++...|++....... +.-+++|+||.|+.+ ++...+ ....+..++..|+++|++.|.|+
T Consensus 94 ds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 94 DSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred CCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence 99999999999999999999999999988764 355679999999976 455444 44678888999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 027593 161 EKPFLYLARKLAGD 174 (221)
Q Consensus 161 ~~~~~~l~~~l~~~ 174 (221)
+++|..|+.++...
T Consensus 174 k~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 174 KQLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHHHhccCc
Confidence 99999999877553
No 8
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.2e-33 Score=207.06 Aligned_cols=188 Identities=82% Similarity=1.318 Sum_probs=159.4
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCh
Q 027593 19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 98 (221)
Q Consensus 19 ~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 98 (221)
+|.+|||||||+++|+.+.+...+.++.|.++....+.+++..+.+.+|||+|++.+...+..++++++++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999988888889999999888888888899999999999999999999999999999999999999
Q ss_pred hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhCCCCCc
Q 027593 99 LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 99 ~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~ 178 (221)
.+|..+..|+..+....++.|+++|+||+|+..+.+..+...++...++.++++||++|.|++++|.+|++.+.....+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~ 160 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 160 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcccce
Confidence 99999999999998877789999999999997655555556777788899999999999999999999999998765544
Q ss_pred cccCCCCCCcccccchHHHHHHHHHHHH
Q 027593 179 FVESPALAPPEVQIDLAAQQQHEAELAA 206 (221)
Q Consensus 179 ~~~ep~~~~~~~~~~~~~~~~~~~~~~~ 206 (221)
....|...++....++...+...+.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (200)
T smart00176 161 FVAMPALAPPEVVMDPALAAQYEHDLEV 188 (200)
T ss_pred eccCcccCCcccccChhhhhhhhHHHHH
Confidence 4455555545444455555555554443
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.4e-33 Score=204.57 Aligned_cols=165 Identities=23% Similarity=0.502 Sum_probs=147.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.+||+++|..|||||||+.+|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.++++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 46999999999999999999999988888888888888887788888888999999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
|||++++.+|.++..|+..+....++.|+++|+||+|+.. +.+.. +...++...++.++++||++|.|++++|.+|++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999999987778899999999999965 33433 345777888999999999999999999999999
Q ss_pred HHhCCCC
Q 027593 170 KLAGDPN 176 (221)
Q Consensus 170 ~l~~~~~ 176 (221)
.+..+..
T Consensus 165 ~i~~~~~ 171 (189)
T cd04121 165 IVLMRHG 171 (189)
T ss_pred HHHHhcC
Confidence 8875443
No 10
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-34 Score=197.98 Aligned_cols=164 Identities=32% Similarity=0.551 Sum_probs=153.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
-+.+|+.++|..|+|||+|+.+|....|.+.+..|+|+++-...+++++..+.+++|||+|++.+++....|++.+.+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|||++.+++|..+..|+..+.++. +++-+++++||+|+.. +.+..+ ...+++++++.++++||+++.+++++|..+
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINT 163 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHH
Confidence 9999999999999999999999984 8999999999999976 445544 458999999999999999999999999999
Q ss_pred HHHHhCC
Q 027593 168 ARKLAGD 174 (221)
Q Consensus 168 ~~~l~~~ 174 (221)
++.+...
T Consensus 164 a~~Iy~~ 170 (216)
T KOG0098|consen 164 AKEIYRK 170 (216)
T ss_pred HHHHHHH
Confidence 9988764
No 11
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-33 Score=196.25 Aligned_cols=215 Identities=76% Similarity=1.214 Sum_probs=202.8
Q ss_pred CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (221)
|.+|+.+ ...++++++|..|.||||++++++.+.|...+.++.|...++....-+.+.+++..|||+|++.+.....
T Consensus 1 M~~p~~~---~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd 77 (216)
T KOG0096|consen 1 MTSPPQQ---GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD 77 (216)
T ss_pred CCCCccc---cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc
Confidence 6776655 7889999999999999999999999999999999999999998777776789999999999999999999
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 160 (221)
.++-+..+.+++||++.+....++..|...+...+.++|+++++||.|.+.++...+...+.+..++.+++.|++++.+.
T Consensus 78 gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 78 GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeeccccccc
Confidence 99999999999999999999999999999999999999999999999999888778888888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCCCCCCc
Q 027593 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 218 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (221)
+.-|.++++.+..+|.+.++..|...||+...|...+++.+..+.++...++|++||+
T Consensus 158 ekPFl~LarKl~G~p~Lefva~paLaPpev~~d~~~~~q~e~dl~~a~t~~lp~ed~~ 215 (216)
T KOG0096|consen 158 ERPFLWLARKLTGDPSLEFVAMPALAPPEVIMDYWLQRQHEHDLAEAQTTALPDEDDK 215 (216)
T ss_pred ccchHHHhhhhcCCCCeEEEeccccCCCeeeccchhhHHHHHHHHHHhccCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999983
No 12
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.8e-32 Score=198.65 Aligned_cols=158 Identities=28% Similarity=0.485 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|.+|+|||||+.+|+.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++++++++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999888889998666 445677888899999999999999999999999999999999
Q ss_pred eCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCccc-----------ccH-HHHHHHHhcCc-eEEEeecCCCCC
Q 027593 94 DVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKA-KQVTFHRKKNL-QYYEISAKSNYN 159 (221)
Q Consensus 94 d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-----------~~~-~~~~~~~~~~~-~~~~~s~~~~~~ 159 (221)
|++++.||.++ ..|+..+....++.|+++|+||+|+.+.. +.. +...++...++ .++++||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99999999998 68999988777789999999999996531 223 34577777787 699999999999
Q ss_pred hHHHHHHHHHHHh
Q 027593 160 FEKPFLYLARKLA 172 (221)
Q Consensus 160 i~~~~~~l~~~l~ 172 (221)
++++|..+++.+.
T Consensus 161 V~~~F~~~~~~~~ 173 (176)
T cd04133 161 VKAVFDAAIKVVL 173 (176)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999764
No 13
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=3.1e-32 Score=196.45 Aligned_cols=164 Identities=87% Similarity=1.432 Sum_probs=146.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++.+.+........++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888889888888777777888899999999999999888889999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
|+++..+|..+..|...+.....+.|+++|+||+|+.......+...+....++.++++||++|.|++++|.+|++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 99999999999999999988777899999999999976555455556667778899999999999999999999999987
Q ss_pred CCCC
Q 027593 174 DPNL 177 (221)
Q Consensus 174 ~~~~ 177 (221)
.|.+
T Consensus 161 ~~~~ 164 (166)
T cd00877 161 NPNL 164 (166)
T ss_pred cccc
Confidence 7654
No 14
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=6.9e-33 Score=192.52 Aligned_cols=166 Identities=31% Similarity=0.638 Sum_probs=150.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
...-+||.++|.+|+|||||+|+|+..+|...+..++|.+.-.+.+.+++..+.+++|||+|+++|.++...+++.+|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCc---ccccHH-HHHHHHhc-CceEEEeecCCCCC
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKK-NLQYYEISAKSNYN 159 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~---~~~~~~-~~~~~~~~-~~~~~~~s~~~~~~ 159 (221)
++|||+.++.||+++..|+..+.... ...|+|+++||.|+.. +++..+ ...+|... +++||++||+...+
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 99999999999999999999987764 2679999999999966 566654 45777765 57999999999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 027593 160 FEKPFLYLARKLAGDP 175 (221)
Q Consensus 160 i~~~~~~l~~~l~~~~ 175 (221)
+..+|..+++..+.+.
T Consensus 166 V~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 166 VDEAFEEIARRALANE 181 (210)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887654
No 15
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3.2e-32 Score=198.51 Aligned_cols=161 Identities=24% Similarity=0.411 Sum_probs=141.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
...+||+++|.+|+|||||+++|+.+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..+++++++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 45789999999999999999999999998888888886553 56778888999999999999999999999999999999
Q ss_pred EEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCc-------------ccccH-HHHHHHHhcCc-eEEEeec
Q 027593 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISA 154 (221)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~-------------~~~~~-~~~~~~~~~~~-~~~~~s~ 154 (221)
+|||++++.||.++ ..|...+....++.|+++|+||+|+.. +.+.. +..+++...++ +|+++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999997 799999988878899999999999853 12333 45578888885 8999999
Q ss_pred CCCCC-hHHHHHHHHHHHh
Q 027593 155 KSNYN-FEKPFLYLARKLA 172 (221)
Q Consensus 155 ~~~~~-i~~~~~~l~~~l~ 172 (221)
++|.| ++++|..++++..
T Consensus 162 k~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 162 LQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 99998 9999999998643
No 16
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=188.71 Aligned_cols=161 Identities=33% Similarity=0.594 Sum_probs=151.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
-++.+|+|.+|+|||+|+-+|..+.|...|..++|++....++.+.|..+.++|||++|+++|+.....|++..+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc--HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
||+++.+||.+...|++.+...++..|-++|+||+|..++.+. .+...++...++.+|++|++.+.+++..|.-|.+.
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999876543 35678999999999999999999999999999987
Q ss_pred HhC
Q 027593 171 LAG 173 (221)
Q Consensus 171 l~~ 173 (221)
+.+
T Consensus 168 vl~ 170 (198)
T KOG0079|consen 168 VLQ 170 (198)
T ss_pred HHH
Confidence 754
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=4.6e-32 Score=200.36 Aligned_cols=161 Identities=29% Similarity=0.601 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+.|+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..++++++++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998888899998888888888888899999999999999999999999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhc-CceEEEeecCCCCChHHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
|++++.+|.++..|+..+.... .+.|+++|+||+|+.. +.+..+ ..+++... ++.++++||++|.|++++|.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887654 5799999999999964 444433 33556554 789999999999999999999999
Q ss_pred HHhCC
Q 027593 170 KLAGD 174 (221)
Q Consensus 170 ~l~~~ 174 (221)
.+...
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 88764
No 18
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=5.2e-32 Score=199.45 Aligned_cols=162 Identities=31% Similarity=0.538 Sum_probs=139.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
|..+||+++|..|||||||+.+|+.+.+...+.++.+..+. ....+++..+.+.+|||+|++.++..+..+++++++++
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 45699999999999999999999999998888889886553 44567888899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------cc-HHHHHHHHhcC-ceEEEeec
Q 027593 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKN-LQYYEISA 154 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~-~~~~~~~~~~~-~~~~~~s~ 154 (221)
+|||++++.||+++. .|...+....++.|+++|+||+|+.+.. +. .+...++...+ ++++++||
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 999999999999996 6888777666789999999999996431 12 23345667777 58999999
Q ss_pred CCCCChHHHHHHHHHHHhC
Q 027593 155 KSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 155 ~~~~~i~~~~~~l~~~l~~ 173 (221)
++|.|++++|..+++.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 19
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.5e-31 Score=194.64 Aligned_cols=159 Identities=23% Similarity=0.399 Sum_probs=138.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
.+||+++|++|||||||+++|+.+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++++++++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 379999999999999999999999998888888876653 5677888889999999999999999999999999999999
Q ss_pred EeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCc-------------ccccH-HHHHHHHhcCc-eEEEeecCC
Q 027593 93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISAKS 156 (221)
Q Consensus 93 ~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~-------------~~~~~-~~~~~~~~~~~-~~~~~s~~~ 156 (221)
||++++.||.++ ..|...+....++.|+++|+||+|+.+ +.+.. +..+++...++ +|+++||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 999999999996 799999988878899999999999853 12333 45578888886 899999999
Q ss_pred CCC-hHHHHHHHHHHHh
Q 027593 157 NYN-FEKPFLYLARKLA 172 (221)
Q Consensus 157 ~~~-i~~~~~~l~~~l~ 172 (221)
|.+ ++++|..++++..
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998643
No 20
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.4e-31 Score=201.03 Aligned_cols=163 Identities=21% Similarity=0.353 Sum_probs=142.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
...+||+++|..|||||||+++|+.+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|...+..+++++++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 45689999999999999999999999998888889886664 45778888999999999999999999999999999999
Q ss_pred EEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCc-------------ccccH-HHHHHHHhcCc-eEEEeec
Q 027593 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISA 154 (221)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~-------------~~~~~-~~~~~~~~~~~-~~~~~s~ 154 (221)
+|||+++..+|..+ ..|...+....++.|+++|+||+|+.. +.+.. +..+++...++ .|+++||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 99999999999984 799999988777899999999999853 23333 45688888898 6999999
Q ss_pred CCCC-ChHHHHHHHHHHHhCC
Q 027593 155 KSNY-NFEKPFLYLARKLAGD 174 (221)
Q Consensus 155 ~~~~-~i~~~~~~l~~~l~~~ 174 (221)
++|. |++++|..+++.+.++
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHh
Confidence 9997 8999999999987653
No 21
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=3.9e-31 Score=193.14 Aligned_cols=161 Identities=24% Similarity=0.405 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|..|||||||+++|+.+.+...+.++.|.++....+.+++..+.+.+||++|++.+...+..++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999998888888888888899999999999999999999999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCcc-------cccHHHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 165 (221)
|++++.+|.++..|+..+....+ ..| ++|+||+|+... ....+...++...+++++++||++|.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998877644 455 688999998521 112233456677789999999999999999999
Q ss_pred HHHHHHhCCC
Q 027593 166 YLARKLAGDP 175 (221)
Q Consensus 166 ~l~~~l~~~~ 175 (221)
++++.+..-|
T Consensus 160 ~l~~~l~~~~ 169 (182)
T cd04128 160 IVLAKAFDLP 169 (182)
T ss_pred HHHHHHHhcC
Confidence 9999886533
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=4.8e-31 Score=190.30 Aligned_cols=161 Identities=34% Similarity=0.558 Sum_probs=141.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
.+||+++|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999988888888888888777778888889999999999999999889999999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
||++++.+|..+..|+..+.... ++.|+++|+||+|+... ... .+..+++...+++++++||++|.|++++|..+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876653 57899999999999653 333 3445677777899999999999999999999998
Q ss_pred HHhC
Q 027593 170 KLAG 173 (221)
Q Consensus 170 ~l~~ 173 (221)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7753
No 23
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=6.4e-31 Score=195.28 Aligned_cols=162 Identities=35% Similarity=0.599 Sum_probs=140.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
+||+++|++|||||||+++|+.+.+...+.++.+.++....+.++ +..+.+.+|||+|++.+...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 689999999999999999999998888888899988877777777 7789999999999999999999999999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcC-ceEEEeecCCCCChHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~-~~~~~~s~~~~~~i~~~~ 164 (221)
||++++.+|..+..|...+.... ...|+++|+||+|+.. ..... +..+++...+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988776532 4689999999999973 33333 4456777777 689999999999999999
Q ss_pred HHHHHHHhCCC
Q 027593 165 LYLARKLAGDP 175 (221)
Q Consensus 165 ~~l~~~l~~~~ 175 (221)
.+|++.+....
T Consensus 161 ~~l~~~l~~~~ 171 (201)
T cd04107 161 RFLVKNILAND 171 (201)
T ss_pred HHHHHHHHHhc
Confidence 99999887654
No 24
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.98 E-value=1.1e-30 Score=187.50 Aligned_cols=159 Identities=31% Similarity=0.527 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|.+|||||||+++++.+.+.+...++.+.+.......+++..+.+.+|||+|++.+...+..+++.++++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777777777777777777888899999999999999999999999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
|++++.++..+..|+..+....++.|+++++||+|+... ...+...++...+++++++|+++|.|++++|..+++.+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998777678999999999998532 2233345566667899999999999999999999987654
No 25
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.98 E-value=1.1e-30 Score=188.55 Aligned_cols=162 Identities=30% Similarity=0.573 Sum_probs=142.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.+||+++|++|+|||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46999999999999999999999999988888999988877778888888999999999999988888889999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
|||++++.+|..+..|+..+.... .+.|+++++||+|+.+. .... +....+...+++++++|+++|.|++++|.+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999887764 47899999999999753 3332 34466677788999999999999999999999
Q ss_pred HHHhC
Q 027593 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+..
T Consensus 162 ~~~~~ 166 (167)
T cd01867 162 KDIKK 166 (167)
T ss_pred HHHHh
Confidence 98764
No 26
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.98 E-value=1.3e-30 Score=193.28 Aligned_cols=165 Identities=32% Similarity=0.549 Sum_probs=145.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..++.++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35799999999999999999999988887778888888888778888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-cc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
+|||++++.+|..+..|+..+....+..|+++|+||+|+.... .. .+...++...+.+++++|+++|.|++++|.+|.
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 9999999999999999999988777789999999999997532 23 334456667789999999999999999999999
Q ss_pred HHHhCCC
Q 027593 169 RKLAGDP 175 (221)
Q Consensus 169 ~~l~~~~ 175 (221)
+.+....
T Consensus 164 ~~~~~~~ 170 (199)
T cd04110 164 ELVLRAK 170 (199)
T ss_pred HHHHHhh
Confidence 9987643
No 27
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.98 E-value=1.1e-30 Score=187.46 Aligned_cols=157 Identities=29% Similarity=0.547 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|+|||||+++|+.+.+.+.+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++.++++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888889888888778888888899999999999999988899999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
|++++.+|..+..|+..+..... +.|+++|+||+|+... .+. .+...++...+++++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999998876653 6899999999998643 333 34456677778999999999999999999999874
No 28
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.98 E-value=1.1e-30 Score=189.25 Aligned_cols=160 Identities=31% Similarity=0.500 Sum_probs=138.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
.+||+++|.+|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||+|+..+...+..++..++++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 48999999999999999999999998877778887444 44567788889999999999999999999999999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
||++++.+|..+..|...+.... ++.|+++|+||+|+.+ +.+.. +...++...+++++++||++|.|++++|.+|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999998887776642 5799999999999864 33443 34467777889999999999999999999999
Q ss_pred HHHhC
Q 027593 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+..
T Consensus 161 ~~~~~ 165 (172)
T cd04141 161 REIRR 165 (172)
T ss_pred HHHHH
Confidence 98775
No 29
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.98 E-value=1.7e-30 Score=187.41 Aligned_cols=160 Identities=33% Similarity=0.610 Sum_probs=140.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
.+||+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.++++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999998888777788888888888888888889999999999999988889999999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
||++++.+|..+..|+..+.... ++.|+++++||+|+... ... .+...++...+++++++|+++|.|++++|..|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999887765 57899999999998643 333 3345666777899999999999999999999999
Q ss_pred HHh
Q 027593 170 KLA 172 (221)
Q Consensus 170 ~l~ 172 (221)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
No 30
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.98 E-value=2.2e-30 Score=186.72 Aligned_cols=159 Identities=28% Similarity=0.583 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||++++..+.+...+.++.+.++.......++..+.+.+||++|+..+...+..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999888777888887777777777777899999999999999988999999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCccc-cc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
|+++..+|..+..|+..+.... ...|+++|+||+|+.+.. .. .+..+++...+++++++|+++|.|++++|.++++.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999887765 478999999999996532 22 33445667778899999999999999999999987
Q ss_pred Hh
Q 027593 171 LA 172 (221)
Q Consensus 171 l~ 172 (221)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 64
No 31
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=2.5e-30 Score=187.90 Aligned_cols=157 Identities=25% Similarity=0.435 Sum_probs=132.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|.+|||||||+++|+.+.+...+.++.+..+. ....+.+..+.+.+|||+|++.+...+..++++++++++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888888876554 34567777899999999999999999889999999999999
Q ss_pred eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcC-ceEEEeecCCC
Q 027593 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKN-LQYYEISAKSN 157 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~-~~~~~~s~~~~ 157 (221)
|++++.+|.++. .|...+....++.|+++|+||+|+... .+.. +..+++...+ +.++++||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 999999999997 598888776678999999999998542 1222 2234555665 68999999999
Q ss_pred CChHHHHHHHHHHH
Q 027593 158 YNFEKPFLYLARKL 171 (221)
Q Consensus 158 ~~i~~~~~~l~~~l 171 (221)
.|++++|..++++.
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998853
No 32
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-31 Score=179.98 Aligned_cols=169 Identities=30% Similarity=0.536 Sum_probs=152.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+-+|++++|+.|+|||+|+.+|+.+++..+..+++|++.....+.+.+..+.+++|||+|+++|++..+.|++.+-+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|||++++++|..+..|+...+... +++-+++++||.|+.. +++.. +...++....+.+.++|+++|++++++|...
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c 166 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 166 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHH
Confidence 9999999999999999999988874 5788899999999975 45555 4557888888899999999999999999999
Q ss_pred HHHHhCCCCCcc
Q 027593 168 ARKLAGDPNLHF 179 (221)
Q Consensus 168 ~~~l~~~~~~~~ 179 (221)
++.+..+-+.-.
T Consensus 167 ~~tIl~kIE~GE 178 (214)
T KOG0086|consen 167 ARTILNKIESGE 178 (214)
T ss_pred HHHHHHHHhhcC
Confidence 999887654433
No 33
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=2.4e-30 Score=186.69 Aligned_cols=159 Identities=27% Similarity=0.545 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.++++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888899998888888888888999999999999998888889999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc------CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~------~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 165 (221)
|++++.+|..+..|+..+.... .+.|+++|+||+|+.. .....+ ...++...+++++++|+++|.|++++|.
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999887764 3689999999999963 333333 3356677788999999999999999999
Q ss_pred HHHHHHh
Q 027593 166 YLARKLA 172 (221)
Q Consensus 166 ~l~~~l~ 172 (221)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 34
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-31 Score=178.49 Aligned_cols=164 Identities=34% Similarity=0.606 Sum_probs=148.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
.-+||+++|..|+|||+|+++|..|.|++....++|++...+++.+++..+.+++|||+|++++++....|++.++++++
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
+||++...+|.-+..|+..+..+. ...-.|+|+||.|+.++ +++.. ..++.....+.|.++|++...+++++|..++
T Consensus 86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence 999999999999999999998875 45667899999999875 44443 3367777888999999999999999999999
Q ss_pred HHHhCCC
Q 027593 169 RKLAGDP 175 (221)
Q Consensus 169 ~~l~~~~ 175 (221)
..+....
T Consensus 166 ~rli~~a 172 (213)
T KOG0095|consen 166 CRLISEA 172 (213)
T ss_pred HHHHHHH
Confidence 8886643
No 35
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-30 Score=185.06 Aligned_cols=167 Identities=32% Similarity=0.514 Sum_probs=154.1
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCcc
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (221)
..-.+.+||.++|.+|+|||-|+.+|..+.|......|+|++....++.+++..+..++|||+||++|+.....|++.+.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 164 (221)
++++|||++...+|+++..|+.+++.+. ++.++++|+||+|+.+ +.+.. +...++...++.++++||+.+.+++.+|
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 9999999999999999999999999997 6899999999999986 44444 4568899999999999999999999999
Q ss_pred HHHHHHHhCC
Q 027593 165 LYLARKLAGD 174 (221)
Q Consensus 165 ~~l~~~l~~~ 174 (221)
..+...+...
T Consensus 169 ~~~l~~I~~~ 178 (222)
T KOG0087|consen 169 ERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHH
Confidence 9988887653
No 36
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=2.6e-30 Score=188.84 Aligned_cols=162 Identities=32% Similarity=0.558 Sum_probs=140.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec----------CeEEEEEEEeCCCcccccccccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----------CGKIRFYCWDTAGQEKFGGLRDG 81 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~ 81 (221)
+.+||+++|++|||||||++++..+.+...+.++.+.++......+. +..+.+.+||++|++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56999999999999999999999999988888888887776665543 45689999999999999999999
Q ss_pred cccCccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCC
Q 027593 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~ 157 (221)
++++++++++|||+++..+|..+..|+..+.... ++.|+++|+||+|+.. +.... +..+++...+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999999887653 5789999999999865 33333 345677788899999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 027593 158 YNFEKPFLYLARKLAG 173 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~ 173 (221)
.|++++|..|++.+.+
T Consensus 163 ~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 163 TNVEKAVERLLDLVMK 178 (180)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987754
No 37
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=4.8e-30 Score=186.25 Aligned_cols=156 Identities=28% Similarity=0.498 Sum_probs=132.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|.+|||||||+.+++.+.+...+.++.+. .......+++..+.+.+|||+|++.+...+..++.+++++++||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999998888888763 33445667888899999999999999999999999999999999
Q ss_pred eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------cc-HHHHHHHHhcC-ceEEEeecCCC
Q 027593 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKN-LQYYEISAKSN 157 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~-~~~~~~~~~~~-~~~~~~s~~~~ 157 (221)
|++++.+|.++. .|...+....++.|+++|+||+|+.+.. +. .+..+++...+ +.++++||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 999999999986 6888777666789999999999995421 22 23345666677 48999999999
Q ss_pred CChHHHHHHHHHH
Q 027593 158 YNFEKPFLYLARK 170 (221)
Q Consensus 158 ~~i~~~~~~l~~~ 170 (221)
.|++++|..+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999874
No 38
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=4.7e-30 Score=188.85 Aligned_cols=162 Identities=28% Similarity=0.536 Sum_probs=138.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
++++||+++|.+|||||||+++|+.+.+...+.++.+.++ ...+.+++..+.+.+|||+|++.+...+..+++.+++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 5679999999999999999999999888777778877555 456777888899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
+|||+++..+|..+..|...+.... ++.|+++++||+|+... .+.. +...++...+++++++||++|.|++++|.+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999988876653 47899999999998642 2232 334566667889999999999999999999
Q ss_pred HHHHHhC
Q 027593 167 LARKLAG 173 (221)
Q Consensus 167 l~~~l~~ 173 (221)
|++.+..
T Consensus 162 l~~~l~~ 168 (189)
T PTZ00369 162 LVREIRK 168 (189)
T ss_pred HHHHHHH
Confidence 9998764
No 39
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=5e-30 Score=184.21 Aligned_cols=158 Identities=36% Similarity=0.701 Sum_probs=145.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (221)
||+++|++|||||||+++|..+.+...+.++.|.+.......+++..+.+.+||++|++.+...+..++.+++++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred CCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593 95 VTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l 171 (221)
++++.||..+..|+..+....+ ..|+++++||+|+.. +.+.. +...++..++.+|+++|++++.++.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998887 699999999999986 45544 45578888899999999999999999999999987
Q ss_pred h
Q 027593 172 A 172 (221)
Q Consensus 172 ~ 172 (221)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=4.2e-30 Score=184.70 Aligned_cols=158 Identities=32% Similarity=0.578 Sum_probs=133.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
++||+++|++|||||||+++++.+.+...+.++.+ ......+.+++..+.+.+|||+|++++...+..+++.++++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 48999999999999999999998888777777766 33445567778888999999999999999999999999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
||+++..+|..+..|...+.... .+.|+++++||+|+.. +.... +...+....+.+++++||++|.|++++|.+|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887653 4789999999999864 33333 23355666678999999999999999999998
Q ss_pred HHH
Q 027593 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 754
No 41
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=5.7e-30 Score=184.31 Aligned_cols=159 Identities=30% Similarity=0.545 Sum_probs=135.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
++||+++|.+|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+|||+|++.+...+..+++.++++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 58999999999999999999998888777777777554 34567777889999999999999999999999999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCccc-ccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~-~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
||+++..+|..+..|...+.... .+.|+++++||+|+.... ...+ ...++...+++++++||++|.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988886543 579999999999996532 2322 3356677789999999999999999999999
Q ss_pred HHHh
Q 027593 169 RKLA 172 (221)
Q Consensus 169 ~~l~ 172 (221)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8764
No 42
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=5.2e-30 Score=184.10 Aligned_cols=157 Identities=31% Similarity=0.669 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec--CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+||+++|.+|+|||||+++++.+.+...+.++.+.++......+. +..+.+.+|||||++.+...+..+++.++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988888888888888877777666 678899999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
|||++++.+|..+..|+..+.....+.|+++|+||+|+.. ..+.. +...++...+++++++|+++|.|++++|.+|+.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999998887777899999999999864 33333 344667778899999999999999999999876
Q ss_pred H
Q 027593 170 K 170 (221)
Q Consensus 170 ~ 170 (221)
.
T Consensus 161 ~ 161 (162)
T cd04106 161 K 161 (162)
T ss_pred h
Confidence 3
No 43
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8e-31 Score=175.65 Aligned_cols=164 Identities=26% Similarity=0.534 Sum_probs=149.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.+|+.++|...+|||+|+.+|....+.+.+-.+.|++...+++.-....+.+++|||+|+++++.+...+++++.++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 35799999999999999999999999999999999999999988777788999999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCccc-ccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~-~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
+||++|.+||..+..|...+...+ .+.|+|+++||||+.... +..+ ...++..+|..||++|++.+.+++++|..++
T Consensus 100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLV 179 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHH
Confidence 999999999999999999988776 689999999999998643 4444 5688999999999999999999999999999
Q ss_pred HHHhCCC
Q 027593 169 RKLAGDP 175 (221)
Q Consensus 169 ~~l~~~~ 175 (221)
..+....
T Consensus 180 ~~Ic~km 186 (193)
T KOG0093|consen 180 DIICDKM 186 (193)
T ss_pred HHHHHHh
Confidence 9887643
No 44
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=6.4e-30 Score=191.10 Aligned_cols=161 Identities=24% Similarity=0.432 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+|+|.+|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|...+..++..+|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999998888888886654 46778888999999999999999999999999999999999
Q ss_pred eCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcCc-eEEEeecCCC
Q 027593 94 DVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSN 157 (221)
Q Consensus 94 d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~~-~~~~~s~~~~ 157 (221)
|++++.+|.++ ..|...+....++.|+++|+||+|+... .+.. +...++...++ .|++|||+++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 99999999998 4788777766778999999999998542 1222 34467777785 8999999998
Q ss_pred C-ChHHHHHHHHHHHhCCC
Q 027593 158 Y-NFEKPFLYLARKLAGDP 175 (221)
Q Consensus 158 ~-~i~~~~~~l~~~l~~~~ 175 (221)
. |++++|...+++.....
T Consensus 161 ~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 161 ERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CcCHHHHHHHHHHHHHhcc
Confidence 8 59999999999876543
No 45
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=8.5e-30 Score=184.32 Aligned_cols=159 Identities=28% Similarity=0.461 Sum_probs=137.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (221)
||+++|.+|||||||+++|+.+.+...+.++.+.++......+++..+.+.+|||+|++.+...+..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988889999988887788888888999999999999999999999999999999999
Q ss_pred CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccc---cH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV---KA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~---~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
++++.++..+..|+..+.... ...|+++|+||.|+..... .. +...++...+++++++||++|.|++++|..|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999876542 3578999999999854321 12 23356667788999999999999999999999
Q ss_pred HHHhC
Q 027593 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+..
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 97753
No 46
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=1e-29 Score=187.02 Aligned_cols=158 Identities=31% Similarity=0.509 Sum_probs=133.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (221)
||+++|++|||||||+++|+.+.+...+.++.+..+. ....+++..+.+.+|||+|++.+...+..++..++++++|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 8999999999999999999999988777778775543 455667778999999999999999998999999999999999
Q ss_pred CCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcccc-------------cH-HHHHHHHhcC-ceEEEeecCCCC
Q 027593 95 VTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KA-KQVTFHRKKN-LQYYEISAKSNY 158 (221)
Q Consensus 95 ~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-------------~~-~~~~~~~~~~-~~~~~~s~~~~~ 158 (221)
++++.+|..+. .|+..+....++.|+++|+||+|+..... .. +...++...+ +.++++||++|.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 99999999886 68888887777899999999999865321 11 2334555555 689999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 027593 159 NFEKPFLYLARKLAG 173 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~ 173 (221)
|++++|.+|++.+..
T Consensus 161 ~v~e~f~~l~~~~~~ 175 (189)
T cd04134 161 GVNEAFTEAARVALN 175 (189)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998764
No 47
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=1e-29 Score=182.34 Aligned_cols=158 Identities=30% Similarity=0.565 Sum_probs=134.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
++||+++|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||+|++.+...+..+++.++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999998888777777776444 44566777788899999999999999999999999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
||+++..+|.++..|...+.... .+.|+++|+||+|+..+.... +....+...+++++++|+++|.|++++|.++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999988888887653 478999999999997654443 334566677889999999999999999999987
Q ss_pred HH
Q 027593 170 KL 171 (221)
Q Consensus 170 ~l 171 (221)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 48
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=1.4e-29 Score=183.37 Aligned_cols=160 Identities=32% Similarity=0.618 Sum_probs=138.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
...+||+++|++|||||||+++|+.+.+.+.+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+++++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 45699999999999999999999999888877788888777777888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCcccccH-HHHHHHHhcC-ceEEEeecCCCCChHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~-~~~~~~s~~~~~~i~~~ 163 (221)
+|||++++.+|..+..|...+.... .+.|+++++||+|+..+.... +..+++...+ .+++++||++|.|+.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 9999999999999999988776543 368999999999997554444 3446666666 48999999999999999
Q ss_pred HHHHHHH
Q 027593 164 FLYLARK 170 (221)
Q Consensus 164 ~~~l~~~ 170 (221)
|..+++.
T Consensus 163 ~~~~~~~ 169 (170)
T cd04116 163 FEEAVRR 169 (170)
T ss_pred HHHHHhh
Confidence 9999875
No 49
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=1.4e-29 Score=189.84 Aligned_cols=161 Identities=30% Similarity=0.510 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-eEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
+||+++|++|||||||+++|+.+.+...+.++.+.+.....+.+.+ ..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999888888888999888877777754 578999999999999999999999999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
||++++.+|..+..|...+.... .+.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999887764 2467999999999964 33333 344677777899999999999999999999
Q ss_pred HHHHHhCC
Q 027593 167 LARKLAGD 174 (221)
Q Consensus 167 l~~~l~~~ 174 (221)
|++.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988753
No 50
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=1.5e-29 Score=181.98 Aligned_cols=158 Identities=29% Similarity=0.547 Sum_probs=133.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
++||+++|.+|+|||||+++++.+.+...+.++.+ ........+++..+.+.+|||+|++.+...+..++++++++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 58999999999999999999999988877766665 44455677777788999999999999999999999999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
||+++..+|.++..|...+.... .+.|+++|+||+|+... .... +...++...+++++++||++|.|+.++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887653 57999999999998542 2222 33455556678999999999999999999998
Q ss_pred HHH
Q 027593 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 51
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=1.9e-29 Score=181.77 Aligned_cols=160 Identities=34% Similarity=0.600 Sum_probs=139.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.+||+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..++..++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 35899999999999999999999888887778888888888888888888899999999999988888899999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
|+|+++..+|..+..|+..+..... +.|+++|+||+|+.. +.... +...++...++.++++||++|.|++++|.+|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999998877664 589999999999865 33333 34456666788999999999999999999998
Q ss_pred HHH
Q 027593 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 764
No 52
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.9e-29 Score=181.76 Aligned_cols=159 Identities=33% Similarity=0.599 Sum_probs=137.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.+||+++|++|+|||||+++++.+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999888887778888888777778888877899999999999998888899999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCc-eEEEeecCCCCChHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l 167 (221)
|+|++++.+|..+..|+..+.... .+.|+++|+||+|+... .... +...++...+. .++++|+++|.|++++|.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999887654 57899999999998653 3232 34456666665 78999999999999999999
Q ss_pred HHH
Q 027593 168 ARK 170 (221)
Q Consensus 168 ~~~ 170 (221)
++.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 875
No 53
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.2e-29 Score=185.63 Aligned_cols=162 Identities=29% Similarity=0.585 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
+||+++|++|||||||+++|+.+.+.. .+.++.+.++......+++..+.+.+|||||+..+...+..+++.++++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999998888753 5667777777776778888889999999999999988888899999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-cccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
+|+++..+|.++..|+..+.... ...|+++|+||+|+.. +... .+...+....+++++++|+++|.|++++|.+|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999888765 3789999999999963 3333 3344666777889999999999999999999999
Q ss_pred HHhCCC
Q 027593 170 KLAGDP 175 (221)
Q Consensus 170 ~l~~~~ 175 (221)
.+....
T Consensus 161 ~~~~~~ 166 (191)
T cd04112 161 ELKHRK 166 (191)
T ss_pred HHHHhc
Confidence 987664
No 54
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=4.2e-29 Score=180.52 Aligned_cols=161 Identities=32% Similarity=0.562 Sum_probs=140.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.+||+++|++|||||||+++++.+.+...+.++.+.+.......+++..+.+.+||++|++.+......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999888877777888888888888888888999999999999988888889999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
|+|++++.+|..+..|+..+.... ++.|+++|+||.|+.. ..... +...++...++.++++|++++.|++++|..++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA 162 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999887653 6799999999999864 33333 33456677789999999999999999999999
Q ss_pred HHHh
Q 027593 169 RKLA 172 (221)
Q Consensus 169 ~~l~ 172 (221)
+.+.
T Consensus 163 ~~~~ 166 (168)
T cd01866 163 KEIY 166 (168)
T ss_pred HHHH
Confidence 8764
No 55
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.5e-29 Score=184.86 Aligned_cols=161 Identities=32% Similarity=0.602 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999887778888888888888888888899999999999999888999999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
|++++.+|..+..|+..+.... ...|+++++||+|+.+ +.... ....++...+++++++|+++|.|++++|.+|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999887764 3689999999999874 33333 3345666678899999999999999999999999
Q ss_pred HhCC
Q 027593 171 LAGD 174 (221)
Q Consensus 171 l~~~ 174 (221)
+..+
T Consensus 161 ~~~~ 164 (188)
T cd04125 161 IIKR 164 (188)
T ss_pred HHHH
Confidence 8754
No 56
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=2.3e-29 Score=180.62 Aligned_cols=157 Identities=33% Similarity=0.624 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 68999999999999999999999988888888888888888888888899999999999999888899999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
|+++..+|.++..|+..+.... ++.|+++++||+|+... .... +...++...++.++++|++++.|++++|.++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999988876554 68999999999999653 3333 3446677778999999999999999999999875
No 57
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=4.1e-29 Score=184.53 Aligned_cols=162 Identities=27% Similarity=0.475 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
+||+|+|++|+|||||+++|+.+.+.. .+.++.+.++....+.+.+..+.+.+||++|+..+...+..++..++++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 5778888888777888888889999999999999988888899999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-----ccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-----~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
||+++..+|..+..|+..+....++.|+++|+||+|+.... ... +...++...+.+++++|++++.|++++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999887766689999999999985321 111 233556667789999999999999999999
Q ss_pred HHHHHhCCC
Q 027593 167 LARKLAGDP 175 (221)
Q Consensus 167 l~~~l~~~~ 175 (221)
|++.+.+.+
T Consensus 161 i~~~~~~~~ 169 (193)
T cd04118 161 VAEDFVSRA 169 (193)
T ss_pred HHHHHHHhc
Confidence 999887654
No 58
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=3.7e-29 Score=187.51 Aligned_cols=164 Identities=32% Similarity=0.539 Sum_probs=143.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.+||+++|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+||++|++++...+..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 44679999999999999999999998888777788999888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
++|||+++..+|..+..|+..+.... .+.|+++|+||+|+.. +.... ....++...+++++++||++|.|++++|..
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998887764 4799999999999854 33333 344566677899999999999999999999
Q ss_pred HHHHHhC
Q 027593 167 LARKLAG 173 (221)
Q Consensus 167 l~~~l~~ 173 (221)
|+..+.+
T Consensus 169 l~~~i~~ 175 (216)
T PLN03110 169 ILLEIYH 175 (216)
T ss_pred HHHHHHH
Confidence 9998865
No 59
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=4.1e-29 Score=180.91 Aligned_cols=159 Identities=32% Similarity=0.604 Sum_probs=137.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc-ccccccccCccEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAII 91 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~ 91 (221)
.+||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999988887788888888888888888888999999999998876 467888999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCC---CCChHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKS---NYNFEKPF 164 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~---~~~i~~~~ 164 (221)
|||++++.+|..+..|+..+.... .+.|+++|+||+|+... .... ...+++...+++++++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887653 57999999999998653 3333 34466677789999999998 88999999
Q ss_pred HHHHHHH
Q 027593 165 LYLARKL 171 (221)
Q Consensus 165 ~~l~~~l 171 (221)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998865
No 60
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=176.63 Aligned_cols=175 Identities=29% Similarity=0.466 Sum_probs=155.6
Q ss_pred CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (221)
|.+..+....-.+|||+++|..-+|||+|+-+|+.++|..+...+...+.....+.+.+....+++|||+|+++|..+-.
T Consensus 1 ~~~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP 80 (218)
T KOG0088|consen 1 MMLETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP 80 (218)
T ss_pred CCccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc
Confidence 55566666777899999999999999999999999999998888877777777788888889999999999999999999
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCC
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~ 157 (221)
-|++.++++++|||++|+.||+.++.|...++.... .+.+++|+||.|++. +++.. +....++..+..++++||+.+
T Consensus 81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N 160 (218)
T KOG0088|consen 81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDN 160 (218)
T ss_pred eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccc
Confidence 999999999999999999999999999999988764 578899999999975 44443 566788899999999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 027593 158 YNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~~~ 175 (221)
.|+.++|..|...+....
T Consensus 161 ~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 161 VGISELFESLTAKMIEHS 178 (218)
T ss_pred cCHHHHHHHHHHHHHHHh
Confidence 999999999999887754
No 61
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=4.5e-29 Score=179.83 Aligned_cols=155 Identities=28% Similarity=0.456 Sum_probs=130.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++.+.++ ......+...+.+.+|||+|++.+...+..++..++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777766444 334556677789999999999999888888899999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
|+++..+|..+..|...+.... ++.|+++|+||+|+.. +.... +....+...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999888776643 5789999999999965 33333 3345666678899999999999999999998
Q ss_pred HH
Q 027593 168 AR 169 (221)
Q Consensus 168 ~~ 169 (221)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 62
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=4.2e-29 Score=186.53 Aligned_cols=163 Identities=28% Similarity=0.549 Sum_probs=139.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+. +..+.+.+|||+|++.+...+..+++++++++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 35899999999999999999999888877777888877777777663 56789999999999999988899999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
+|||++++.+|.++..|+..+.... ...|+++++||+|+... .+.. +...++...+++++++|+++|.|++++|.+
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999887654 35678999999998653 3333 344677778899999999999999999999
Q ss_pred HHHHHhCC
Q 027593 167 LARKLAGD 174 (221)
Q Consensus 167 l~~~l~~~ 174 (221)
|++.+...
T Consensus 161 l~~~~~~~ 168 (211)
T cd04111 161 LTQEIYER 168 (211)
T ss_pred HHHHHHHH
Confidence 99988654
No 63
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=3.8e-29 Score=183.78 Aligned_cols=162 Identities=30% Similarity=0.468 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
+||+|+|++|+|||||+++|+.+.+...+.++.+..+.. ..... +..+.+.+|||+|++.+...+..++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999998887777777665543 34444 6678999999999999988888899999999999
Q ss_pred EeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-----cc-HHHHHHHHhcCc-eEEEeecCCCCChHHHH
Q 027593 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-----VK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (221)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-----~~-~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~ 164 (221)
||+++..+|+++. .|...+....++.|+++|+||+|+.... .. .+..+++...+. +++++||++|.|++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence 9999999999986 5887776666789999999999985422 22 234466777777 89999999999999999
Q ss_pred HHHHHHHhCCCC
Q 027593 165 LYLARKLAGDPN 176 (221)
Q Consensus 165 ~~l~~~l~~~~~ 176 (221)
..+++.+.....
T Consensus 160 ~~l~~~~~~~~~ 171 (187)
T cd04132 160 DTAIEEALKKEG 171 (187)
T ss_pred HHHHHHHHhhhh
Confidence 999999876543
No 64
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=6.9e-29 Score=178.53 Aligned_cols=159 Identities=33% Similarity=0.571 Sum_probs=132.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.+||+++|++|+|||||+++++.+.+...+.++.+.. ......+++..+.+.+|||||++++...+..+++.++++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 35899999999999999999999887766666666533 34456677778899999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCccc-ccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~-~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
|+|+++..+|..+..|...+.... .+.|+++++||+|+.... ... +...++...+++++++||++|.|++++|+.|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999988877653 478999999999996532 233 3345666778899999999999999999999
Q ss_pred HHHH
Q 027593 168 ARKL 171 (221)
Q Consensus 168 ~~~l 171 (221)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8754
No 65
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=7.6e-29 Score=178.28 Aligned_cols=160 Identities=34% Similarity=0.695 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+.....++.+.++......+++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 68999999999999999999888887777788888888878888888889999999999998888899999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
|+++..++..+..|+..+.... ++.|+++++||+|+.. ..... ....++...+++++++|+.++.|+++++..|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998887765 6899999999999865 33333 3445667778999999999999999999999987
Q ss_pred HhC
Q 027593 171 LAG 173 (221)
Q Consensus 171 l~~ 173 (221)
+..
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 753
No 66
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=3e-29 Score=184.69 Aligned_cols=160 Identities=33% Similarity=0.543 Sum_probs=134.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (221)
||+++|.+|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||+|++++...+..+++.++++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999998888777777776444 3345667778899999999999999999999999999999999
Q ss_pred CCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 95 VTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
+++..+|..+..|+..+.... .+.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988876543 4689999999999864 33333 33456677788999999999999999999999
Q ss_pred HHHhCCC
Q 027593 169 RKLAGDP 175 (221)
Q Consensus 169 ~~l~~~~ 175 (221)
+.+....
T Consensus 160 ~~l~~~~ 166 (190)
T cd04144 160 RALRQQR 166 (190)
T ss_pred HHHHHhh
Confidence 9886543
No 67
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=1.2e-28 Score=179.12 Aligned_cols=157 Identities=29% Similarity=0.494 Sum_probs=131.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 027593 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (221)
Q Consensus 16 i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 95 (221)
|+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||+|++.+...+..++..++++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999888777766665443 34566777888999999999999999989999999999999999
Q ss_pred CChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------cc-HHHHHHHHhcCc-eEEEeecCCCCC
Q 027593 96 TARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKNL-QYYEISAKSNYN 159 (221)
Q Consensus 96 ~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~-~~~~~~~~~~~~-~~~~~s~~~~~~ 159 (221)
++..+|+++. .|...+....++.|+++|+||+|+.... +. .+..+++...+. .++++|+++|.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 9999999986 5898888777899999999999986421 11 123356777775 899999999999
Q ss_pred hHHHHHHHHHHHhC
Q 027593 160 FEKPFLYLARKLAG 173 (221)
Q Consensus 160 i~~~~~~l~~~l~~ 173 (221)
++++|..+++.+.+
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987653
No 68
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=1.1e-28 Score=177.01 Aligned_cols=157 Identities=32% Similarity=0.565 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||+++++++.+...+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.++++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999988887777788888888888888877789999999999999888888999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCC-cccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~-~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
|++++.+|..+..|+..+..... +.|+++++||+|+. ......+ ........++.++++|++++.|+++++.+|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998766543 69999999999994 3343443 345666778999999999999999999999875
No 69
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=1.5e-28 Score=176.65 Aligned_cols=159 Identities=35% Similarity=0.618 Sum_probs=138.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
++||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.++++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999998888776788888888888888888899999999999998888888899999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
+|+++..+|.....|+..+.... +..|+++++||+|+.. ..... +...++...++.++++|+++|.|++++|.+|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998887765 5789999999999863 22222 344667777899999999999999999999998
Q ss_pred HH
Q 027593 170 KL 171 (221)
Q Consensus 170 ~l 171 (221)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 70
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.2e-28 Score=183.99 Aligned_cols=163 Identities=32% Similarity=0.545 Sum_probs=142.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+|||+|++.+...+..+++.++++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 46999999999999999999999888887778888888888788888888999999999999988888899999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
|||+++..+|..+..|...+.... +..|+++++||+|+... .... +..+++...+++++++|++++.|++++|.+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999989988776553 57999999999999653 3333 34567777889999999999999999999999
Q ss_pred HHHhCC
Q 027593 169 RKLAGD 174 (221)
Q Consensus 169 ~~l~~~ 174 (221)
+.+.++
T Consensus 165 ~~~~~~ 170 (210)
T PLN03108 165 AKIYKK 170 (210)
T ss_pred HHHHHH
Confidence 988754
No 71
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=1.3e-28 Score=177.16 Aligned_cols=158 Identities=30% Similarity=0.566 Sum_probs=132.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+|+|++|||||||+++++.+.+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998888776666665 333455667777899999999999999998899999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
|+++..+|..+..|...+.... .+.|+++++||+|+... .... ....++...+.+++++||++|.|++++|.+|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999888776653 36899999999999653 3333 334566777899999999999999999999998
Q ss_pred HHh
Q 027593 170 KLA 172 (221)
Q Consensus 170 ~l~ 172 (221)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 764
No 72
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=1.6e-28 Score=176.77 Aligned_cols=158 Identities=27% Similarity=0.542 Sum_probs=133.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--CCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
+||+++|++|||||||++++..+ .+...+.++.|.++......+. +..+.+.+|||+|+..+...+..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999997754 5667778888888777766664 56799999999999988888888999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
+|+|+++..+|..+..|+..+.....+.|+++|+||+|+... ..... ...+....+++++++|++++.|++++|..|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 999999999999999999988776667999999999999643 23332 2345566678999999999999999999998
Q ss_pred HHH
Q 027593 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04101 161 RAF 163 (164)
T ss_pred HHh
Confidence 864
No 73
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.4e-28 Score=181.25 Aligned_cols=156 Identities=21% Similarity=0.390 Sum_probs=123.6
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHhcCC-----CCCcccCCcee-EeeeEE--------EEecCeEEEEEEEeCCCcccccc
Q 027593 13 SFKLVIVGDGGTGKTTFVK-RHLTGE-----FEKKYEPTIGV-EVHPLD--------FFTNCGKIRFYCWDTAGQEKFGG 77 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~-~~~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~ 77 (221)
.+||+++|..|||||||+. ++..+. +...+.++.+. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4899999999999999995 554433 33445666652 222222 25678889999999999875 3
Q ss_pred cccccccCccEEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCc--------------------ccccH
Q 027593 78 LRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--------------------RQVKA 136 (221)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~--------------------~~~~~ 136 (221)
....++++++++++|||++++.||.++. .|...+....++.|+++|+||+|+.. +.+..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4566889999999999999999999997 69988877767899999999999863 22333
Q ss_pred -HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593 137 -KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 137 -~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
+..+++...+++|+++||++|.|++++|..++++
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 4557888889999999999999999999999874
No 74
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=2.6e-28 Score=175.13 Aligned_cols=157 Identities=35% Similarity=0.623 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+.....++.+.++......+.+..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 68999999999999999999988887778888888888777777777899999999999998888888999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
|+++..+|..+..|+..+.... .+.|+++++||+|+....... +...++...+++++++|+++|.|+++++..+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999999998887764 478999999999997544333 4456777788999999999999999999988775
No 75
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=2.5e-28 Score=180.40 Aligned_cols=163 Identities=20% Similarity=0.289 Sum_probs=130.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc--------ccccccC
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~ 85 (221)
+||+|+|.+|||||||+++|+.+.+...+.++.+.......+.+++..+.+.+|||||...+... ....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999887777777776666556677777889999999997654221 2234788
Q ss_pred ccEEEEEEeCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCcc-cccHHHH-HHH-HhcCceEEEeecCCCC
Q 027593 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNR-QVKAKQV-TFH-RKKNLQYYEISAKSNY 158 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~~-~~~~~~~-~~~-~~~~~~~~~~s~~~~~ 158 (221)
+|++++|||++++.+|..+..|...+.... ++.|+++|+||+|+... ....+.. .++ ...+++++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999988876653 57899999999999653 2333322 333 3457899999999999
Q ss_pred ChHHHHHHHHHHHhCCCC
Q 027593 159 NFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~ 176 (221)
|++++|..+++.+..+.+
T Consensus 161 ~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 161 HILLLFKELLISATTRGR 178 (198)
T ss_pred CHHHHHHHHHHHhhccCC
Confidence 999999999998876543
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=3e-28 Score=176.57 Aligned_cols=161 Identities=31% Similarity=0.635 Sum_probs=136.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+.....++.+.++......+.+..+.+.+||+||+..+...+..+++.++++++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988887777788887777777788888899999999999988888889999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhcC-----CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcC-ceEEEeecCCCCChHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-----~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~ 165 (221)
|+++..++..+..|...+..... +.|+++|+||+|+.. ..... ....+....+ .+++++|+++|.|++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888887655543 789999999999973 32222 3335556665 7999999999999999999
Q ss_pred HHHHHHhCC
Q 027593 166 YLARKLAGD 174 (221)
Q Consensus 166 ~l~~~l~~~ 174 (221)
+|.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999987754
No 77
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.7e-29 Score=172.20 Aligned_cols=163 Identities=28% Similarity=0.546 Sum_probs=143.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEe-cCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.+.+++.++|.+-+|||+|++.|..|++.....|+.|++....-+.+ .+..+.+++|||+|++++++....|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 35799999999999999999999999999999999999887765555 35678999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc--CCCCE-EEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI-VLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~-i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~ 164 (221)
++|||.+|++||+-+..|+..-.... +.+++ .+|++|+|+.. +++..+ ...++..+++.|+++|+++|.|++++|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 99999999999999999998876654 34444 68999999975 556554 558899999999999999999999999
Q ss_pred HHHHHHHhC
Q 027593 165 LYLARKLAG 173 (221)
Q Consensus 165 ~~l~~~l~~ 173 (221)
..|++.+..
T Consensus 166 ~mlaqeIf~ 174 (213)
T KOG0091|consen 166 DMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHH
Confidence 999998754
No 78
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=2.8e-28 Score=182.14 Aligned_cols=155 Identities=29% Similarity=0.479 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|.+|||||||+++|+.+.+.. +.++.+..+..... ..+.+.+|||+|++.+...+..+++.++++++||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988864 46677665544332 5678999999999999999999999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCCCc--------------------ccccH-HHHHHHHhcC-----
Q 027593 94 DVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN--------------------RQVKA-KQVTFHRKKN----- 146 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~--------------------~~~~~-~~~~~~~~~~----- 146 (221)
|++++.+|.++..|...+... ..+.|+++|+||+|+.+ +.+.. +...++...+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999998877766554 35689999999999864 22223 3345666554
Q ss_pred ---------ceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 147 ---------LQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 147 ---------~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
++|+++||++|.|++++|..+++.+..
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999988764
No 79
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=4.7e-28 Score=175.83 Aligned_cols=155 Identities=26% Similarity=0.453 Sum_probs=129.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|+|||||+++++.+.+...+.++. .+.......+++..+.+.+||++|+..+...+..++++++++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 689999999999999999998888877776665 3445556777888899999999999999999899999999999999
Q ss_pred eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcCc-eEEEeecCCC
Q 027593 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSN 157 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~~-~~~~~s~~~~ 157 (221)
|++++.+|..+. .|...+....++.|+++++||+|+... .+.. +...++...+. .++++||++|
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 999999999885 688877766568999999999998532 2222 34466677777 8999999999
Q ss_pred CChHHHHHHHHH
Q 027593 158 YNFEKPFLYLAR 169 (221)
Q Consensus 158 ~~i~~~~~~l~~ 169 (221)
.|++++|..+..
T Consensus 160 ~~v~~lf~~~~~ 171 (173)
T cd04130 160 KNLKEVFDTAIL 171 (173)
T ss_pred CCHHHHHHHHHh
Confidence 999999987764
No 80
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=2.7e-28 Score=174.23 Aligned_cols=150 Identities=23% Similarity=0.366 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||+++|+.+.+.+.+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.++++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988887665544 3333 35677788888999999999974 34677899999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc---ccccHHH-HHHHHhc-CceEEEeecCCCCChHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQVKAKQ-VTFHRKK-NLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~---~~~~~~~-~~~~~~~-~~~~~~~s~~~~~~i~~~~~~ 166 (221)
|++++.+|.++..|...+.... ++.|+++|+||+|+.. +.+..+. .+++... ++.|++|||++|.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999887764 5789999999999842 3334332 3555554 589999999999999999999
Q ss_pred HHHH
Q 027593 167 LARK 170 (221)
Q Consensus 167 l~~~ 170 (221)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9864
No 81
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=3.7e-28 Score=175.61 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=134.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.+.+||+++|.+|||||||+++|+.+.+. ..+.++.+..+....+.+++..+.+.+||++|+..+...+..++..+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999987 77888888777777777788888999999999999988888999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-cc-HHHHHHHHhcCc-eEEEeecCCCCChHHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~-~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 166 (221)
++|+|++++.+|..+..|...+.. ..+.|+++|+||+|+.+.. .. .+..+++...++ .++++||+++.|++++|..
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM-LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc-CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 999999999999988888775532 2378999999999985432 21 223355566666 4699999999999999999
Q ss_pred HHHHHh
Q 027593 167 LARKLA 172 (221)
Q Consensus 167 l~~~l~ 172 (221)
|++.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 999765
No 82
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.96 E-value=9.8e-28 Score=180.28 Aligned_cols=189 Identities=18% Similarity=0.258 Sum_probs=143.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccccc-CccEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-HGQCAII 91 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~ 91 (221)
+||+++|++|+|||||+++|+.+.+. ..+.++.+.+.....+.+++....+.+|||+|++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999998888876 5566666656677778888888999999999987 223344556 8999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
|||++++.+|..+..|+..+.... .+.|+++|+||+|+.. ..+..+ ...++...+++++++||+++.|++++|.+|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999988887653 5799999999999864 333333 345666678899999999999999999999
Q ss_pred HHHHhCCCCCccccCC---CCCCcccccchHHHHHHHHHH
Q 027593 168 ARKLAGDPNLHFVESP---ALAPPEVQIDLAAQQQHEAEL 204 (221)
Q Consensus 168 ~~~l~~~~~~~~~~ep---~~~~~~~~~~~~~~~~~~~~~ 204 (221)
++.+..........++ .....+...-.....+.+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~l~~~ 198 (221)
T cd04148 159 VRQIRLRRDSKEKNERRSRRAYRGRRESLTSKAKRFLGKL 198 (221)
T ss_pred HHHHHhhhccccccCccccccccCccchHHHHHHHHHHHH
Confidence 9998754443334443 334444444444444444333
No 83
>PLN03118 Rab family protein; Provisional
Probab=99.96 E-value=6.7e-28 Score=180.34 Aligned_cols=167 Identities=31% Similarity=0.537 Sum_probs=139.3
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
.....+||+|+|++|||||||+++|+.+.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+++
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 345579999999999999999999887765 4567788888877778888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhhccHHH-HHHHHHhhc--CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHH
Q 027593 89 AIIMFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 163 (221)
+++|||+++..+|..+.. |...+.... ...|+++|+||+|+... ... .+...++...++.++++|++++.|++++
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l 168 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC 168 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999874 655554432 36799999999998643 332 2344666777889999999999999999
Q ss_pred HHHHHHHHhCCCC
Q 027593 164 FLYLARKLAGDPN 176 (221)
Q Consensus 164 ~~~l~~~l~~~~~ 176 (221)
|.+|.+.+...+.
T Consensus 169 ~~~l~~~~~~~~~ 181 (211)
T PLN03118 169 FEELALKIMEVPS 181 (211)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999987664
No 84
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=9.2e-28 Score=174.41 Aligned_cols=157 Identities=25% Similarity=0.397 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|+|||||+++|+.+.+...+.++.+. .....+.+++..+.+.+|||+|+..+...+..++..++++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999998887766666653 33445667777888999999999999999999999999999999
Q ss_pred eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------ccH-HHHHHHHhcCc-eEEEeecCCC
Q 027593 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEISAKSN 157 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~~-~~~~~~~~~~~-~~~~~s~~~~ 157 (221)
|++++.+|.++. .|...+....++.|+++++||+|+.+.. +.. +...++...+. .++++||++|
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999999885 6888777666789999999999985421 111 23355566665 7999999999
Q ss_pred CChHHHHHHHHHHH
Q 027593 158 YNFEKPFLYLARKL 171 (221)
Q Consensus 158 ~~i~~~~~~l~~~l 171 (221)
.|++++|..++.++
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998875
No 85
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=4.9e-28 Score=184.19 Aligned_cols=157 Identities=30% Similarity=0.527 Sum_probs=131.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|.+|||||||+++|+.+.+...+.++.+ +.....+.+++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998877777776 455566778888899999999999988888788889999999999
Q ss_pred eCCChhhhccHHHHHHHHHhh----------cCCCCEEEEEeCCCCCc-ccccHHHH-HHHH-hcCceEEEeecCCCCCh
Q 027593 94 DVTARLTYKNVPTWHRDLCRV----------CENIPIVLCGNKVDVKN-RQVKAKQV-TFHR-KKNLQYYEISAKSNYNF 160 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~----------~~~~p~i~v~nk~D~~~-~~~~~~~~-~~~~-~~~~~~~~~s~~~~~~i 160 (221)
|+++..+|+++..|...+... ..+.|+++|+||+|+.. +.+..+.. ++.. ..++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998887653 24789999999999964 33343333 3333 23678999999999999
Q ss_pred HHHHHHHHHHH
Q 027593 161 EKPFLYLARKL 171 (221)
Q Consensus 161 ~~~~~~l~~~l 171 (221)
+++|.+|+...
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 86
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=1.3e-27 Score=171.34 Aligned_cols=158 Identities=31% Similarity=0.562 Sum_probs=133.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|+|||||+++++.+.+.....++.+.+.......+.+..+.+.+||++|+..+...+..+++.++++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 68999999999999999999988876666666666666666666777889999999999988888888999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
|+++..++..+..|...+..... +.|+++++||+|+... ....+ ..+.....++.++++|++++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999888877653 6899999999998743 33333 335566678899999999999999999999886
Q ss_pred H
Q 027593 171 L 171 (221)
Q Consensus 171 l 171 (221)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 87
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=4.5e-28 Score=176.88 Aligned_cols=160 Identities=22% Similarity=0.286 Sum_probs=124.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.+.++||+++|.+|||||||++++..+.+. .+.++.|.+... +...++.+++||+||++.++..+..++++++++
T Consensus 14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~----~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~i 88 (181)
T PLN00223 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE----EEECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 466799999999999999999998877764 456777755432 333568999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCCCcccccHHHHHHHHhc-----CceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~ 162 (221)
++|+|+++..++.....++..+.. ..++.|+++++||+|+.+.....+........ .+.++++||++|+|+.+
T Consensus 89 I~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence 999999999999887766665533 23579999999999997643222222222111 23466899999999999
Q ss_pred HHHHHHHHHhCC
Q 027593 163 PFLYLARKLAGD 174 (221)
Q Consensus 163 ~~~~l~~~l~~~ 174 (221)
+|++|+..+..+
T Consensus 169 ~~~~l~~~~~~~ 180 (181)
T PLN00223 169 GLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHhhc
Confidence 999999987653
No 88
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=1.8e-27 Score=171.91 Aligned_cols=159 Identities=28% Similarity=0.527 Sum_probs=133.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
++||+++|.+|||||||+++|..+.+...+.++.+.. ......+++..+.+.+||+||+..+...+..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 4799999999999999999999888877777777644 345566777889999999999999999999999999999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcC-ceEEEeecCCCCChHHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|++++.++..+..|...+.... .+.|+++++||.|+... .... +...+....+ ++++++||+++.|+.++|.++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999988876643 47999999999998643 2222 3334555555 789999999999999999999
Q ss_pred HHHHh
Q 027593 168 ARKLA 172 (221)
Q Consensus 168 ~~~l~ 172 (221)
++.+.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98664
No 89
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=8.5e-28 Score=173.16 Aligned_cols=157 Identities=22% Similarity=0.400 Sum_probs=127.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc-ccccccccccCccEEEEEE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~i~v~ 93 (221)
||+++|++|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+||+||+.. +......+++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999988877666666654333 44567788888999999999885 3445667889999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCC-CChHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSN-YNFEKPFLYL 167 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~-~~i~~~~~~l 167 (221)
|+++..+|..+..|...+.... .+.|+++|+||+|+.. +.+.. +...++...+.+++++|++++ .|++++|..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988877653 3799999999999854 33333 344677777899999999999 5999999999
Q ss_pred HHHHh
Q 027593 168 ARKLA 172 (221)
Q Consensus 168 ~~~l~ 172 (221)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98654
No 90
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=1.3e-27 Score=170.56 Aligned_cols=155 Identities=38% Similarity=0.742 Sum_probs=136.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||++++..+.+...+.++.+.++........+....+.+||+||+..+...+..++++++++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999998888887777888898888888888888899999999999988888899999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCC-ccccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~-~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
|+++..++..+..|+..+.... ...|+++++||+|+. ..... .+...+....+.+++++|++++.|+++++.+|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999999999999998887775 579999999999996 33333 334466667789999999999999999998875
No 91
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=7.2e-28 Score=173.91 Aligned_cols=155 Identities=20% Similarity=0.295 Sum_probs=120.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
+++.+||+++|++|||||||++++..+.+. .+.++.|.++... ....+.+.+|||+|+..+...+..++..++++
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~i 80 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETV----TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 80 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEE----EECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 356799999999999999999998777664 3556766655422 23568999999999999988889999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~ 162 (221)
++|+|+++..+|.++..|+..+... ..+.|+++|+||+|+.+.....+..... ....+.++++||++|.|+++
T Consensus 81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 81 IFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 9999999999998887776665432 3578999999999986532222222221 12235789999999999999
Q ss_pred HHHHHHH
Q 027593 163 PFLYLAR 169 (221)
Q Consensus 163 ~~~~l~~ 169 (221)
+|.+|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 92
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=1.3e-27 Score=172.77 Aligned_cols=158 Identities=23% Similarity=0.344 Sum_probs=123.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (221)
||+++|.+|||||||++++..+.+.. +.+|.+..... +...++.+.+|||||+..+...+..+++.++++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~----~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVET----VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEE----EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999988776543 55666644432 33356899999999999888888899999999999999
Q ss_pred CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHHHhc------CceEEEeecCCCCChHHHHHH
Q 027593 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~------~~~~~~~s~~~~~~i~~~~~~ 166 (221)
+++..++.++..|+..+... ..+.|+++|+||+|+.......+........ ...++++||++|.|++++|.+
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~ 155 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW 155 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence 99999999988888877643 2468999999999997542222222322211 236889999999999999999
Q ss_pred HHHHHhCCCCC
Q 027593 167 LARKLAGDPNL 177 (221)
Q Consensus 167 l~~~l~~~~~~ 177 (221)
|++.+..++.+
T Consensus 156 l~~~~~~~~~~ 166 (169)
T cd04158 156 LSRQLVAAGVL 166 (169)
T ss_pred HHHHHhhcccc
Confidence 99988877654
No 93
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=4.3e-27 Score=170.07 Aligned_cols=160 Identities=34% Similarity=0.614 Sum_probs=134.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.++|+++|++|||||||++++..+.+.+...++.+.+.......+.+..+.+.+||++|+..+...+..++..++++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 56999999999999999999988787777677777777777777788888899999999999888888889999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
|+|+++..+|..+..|+..+..... ..|+++++||+|+.. +..... ...+.......++++|+++|.|++++|.+|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999999888766543 689999999999864 333333 2344455568899999999999999999998
Q ss_pred HHH
Q 027593 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 764
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=5.8e-27 Score=170.34 Aligned_cols=157 Identities=31% Similarity=0.513 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
.||+++|++|||||||+++|+.+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++..++++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999988887777777764443 35567778889999999999998888888899999999999
Q ss_pred eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccccc--------------HHHHHHHHhcC-ceEEEeecCCC
Q 027593 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK--------------AKQVTFHRKKN-LQYYEISAKSN 157 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~--------------~~~~~~~~~~~-~~~~~~s~~~~ 157 (221)
|+++..+|..+. .|...+....++.|+++|+||+|+...... .+..+++...+ ..++++||++|
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 999999998885 588877766678999999999998542211 12234444444 48999999999
Q ss_pred CChHHHHHHHHHHH
Q 027593 158 YNFEKPFLYLARKL 171 (221)
Q Consensus 158 ~~i~~~~~~l~~~l 171 (221)
.|++++|.+|+++.
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 95
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-29 Score=171.73 Aligned_cols=163 Identities=32% Similarity=0.583 Sum_probs=143.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec---------CeEEEEEEEeCCCccccccccccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---------CGKIRFYCWDTAGQEKFGGLRDGY 82 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~g~~~~~~~~~~~ 82 (221)
+-+|.+.+|.+|+||||++.+|..|+|..+...+.|++...+.+..+ +..+++++|||+|+++++++...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 35688899999999999999999999999999999999888776553 345889999999999999999999
Q ss_pred ccCccEEEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCccc-ccHH-HHHHHHhcCceEEEeecCCCC
Q 027593 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEISAKSNY 158 (221)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~-~~~~-~~~~~~~~~~~~~~~s~~~~~ 158 (221)
++.+=+++++||.++..||.+++.|+..+..+ +.+..+++++||+|+++.. +..+ ..+++..+++|||++||.+|.
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 99999999999999999999999999988765 4788899999999998744 3333 458899999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 027593 159 NFEKPFLYLARKLAGD 174 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~ 174 (221)
++++..+.+...++++
T Consensus 168 Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 168 NVEKAVELLLDLVMKR 183 (219)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999998888877764
No 96
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.95 E-value=6.2e-27 Score=168.27 Aligned_cols=158 Identities=31% Similarity=0.583 Sum_probs=132.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999998888776666655333 345567778899999999999999999999999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
|+++..+|.++..|...+.... .+.|+++|+||+|+.. ..... .........+.+++++|++++.|++++|..+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999998888887763 5799999999999975 22332 334556667789999999999999999999998
Q ss_pred HHh
Q 027593 170 KLA 172 (221)
Q Consensus 170 ~l~ 172 (221)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 97
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=1.4e-26 Score=170.08 Aligned_cols=160 Identities=31% Similarity=0.475 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
.||+|+|++|+|||||++++..+.+.+.+.++.+..+ .....+++..+.+.+||++|+..+......++..+++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999888888766655554333 335566777788999999999888777777788999999999
Q ss_pred eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-----------cc-HHHHHHHHhcCc-eEEEeecCCCCC
Q 027593 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VK-AKQVTFHRKKNL-QYYEISAKSNYN 159 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-----------~~-~~~~~~~~~~~~-~~~~~s~~~~~~ 159 (221)
++++..+|..+. .|...+....++.|+++|+||+|+.... .. .+...++...+. .++++||++|.|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 160 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG 160 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence 999999999986 6999888777789999999999985421 11 233456666764 899999999999
Q ss_pred hHHHHHHHHHHHhCC
Q 027593 160 FEKPFLYLARKLAGD 174 (221)
Q Consensus 160 i~~~~~~l~~~l~~~ 174 (221)
++++|.++++.+...
T Consensus 161 v~~~f~~l~~~~~~~ 175 (187)
T cd04129 161 VDDVFEAATRAALLV 175 (187)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999877653
No 98
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=2.8e-27 Score=172.01 Aligned_cols=156 Identities=24% Similarity=0.330 Sum_probs=121.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
+..+||+++|++|||||||++++..+.+. .+.++.+....... ...+.+.+||++|+..+...+..+++++++++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~----~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVT----YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEE----ECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 55799999999999999999998777764 35567765554322 24689999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~ 163 (221)
+|+|++++.++.....|+..+... .++.|+++|+||+|+.+.....+..... ....+.++++||++|.|++++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 999999999998888777766432 3578999999999996532222211111 122345778999999999999
Q ss_pred HHHHHHHH
Q 027593 164 FLYLARKL 171 (221)
Q Consensus 164 ~~~l~~~l 171 (221)
|++|...+
T Consensus 166 ~~~l~~~~ 173 (175)
T smart00177 166 LTWLSNNL 173 (175)
T ss_pred HHHHHHHh
Confidence 99998764
No 99
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=4.9e-27 Score=171.63 Aligned_cols=160 Identities=21% Similarity=0.307 Sum_probs=122.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
...++||+++|++|||||||++++..+.+.. +.++.+..+.. +...++.+++|||+|++.+...+..+++.++++
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~----~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~i 88 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET----VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGL 88 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE----EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 3456999999999999999999987777754 55677755532 233568999999999999998999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~ 162 (221)
++|+|+++..++.....++..+... ..+.|+++|+||.|+.+.....+.... .....+.++++||++|.|+++
T Consensus 89 I~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 89 IFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 9999999999998877666655332 346899999999998653221221111 111234567899999999999
Q ss_pred HHHHHHHHHhCC
Q 027593 163 PFLYLARKLAGD 174 (221)
Q Consensus 163 ~~~~l~~~l~~~ 174 (221)
+|.+|.+.+.+.
T Consensus 169 ~~~~l~~~i~~~ 180 (182)
T PTZ00133 169 GLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 100
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=3.8e-27 Score=168.71 Aligned_cols=151 Identities=24% Similarity=0.336 Sum_probs=116.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|.+|||||||++++..+.+.. +.++.|...... ....+.+.+||++|+..+...+..+++++|++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~~~----~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceEEE----EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 489999999999999999987887753 566777554322 235688999999999998888899999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
|+++..+|..+..|+..+... ..+.|+++++||+|+.+.....+..... ....+.++++||++|.|++++|++
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~ 155 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 155 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence 999999998888766655432 2468999999999996532222211111 122446789999999999999998
Q ss_pred HHH
Q 027593 167 LAR 169 (221)
Q Consensus 167 l~~ 169 (221)
|+.
T Consensus 156 l~~ 158 (159)
T cd04150 156 LSN 158 (159)
T ss_pred Hhc
Confidence 864
No 101
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.95 E-value=1.8e-27 Score=171.26 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=122.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 027593 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (221)
Q Consensus 16 i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 95 (221)
|+++|++|||||||+++|+.+.+...+.++.|... ..+++.++.+.+||++|+..+...+..++++++++++|+|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 78999999999999999998877777777877542 33455678999999999999999999999999999999999
Q ss_pred CChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH------HHHHHHHhcCceEEEeecCC------CCChHHH
Q 027593 96 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA------KQVTFHRKKNLQYYEISAKS------NYNFEKP 163 (221)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~------~~~~~~~~~~~~~~~~s~~~------~~~i~~~ 163 (221)
++..+|.....|+..+....++.|+++|+||+|+....... +...++...++.++++||++ ++|++++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence 99999998888888776555789999999999986533221 12234455678899998888 9999999
Q ss_pred HHHHHH
Q 027593 164 FLYLAR 169 (221)
Q Consensus 164 ~~~l~~ 169 (221)
|..+..
T Consensus 158 ~~~~~~ 163 (164)
T cd04162 158 LSQLIN 163 (164)
T ss_pred HHHHhc
Confidence 987753
No 102
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.95 E-value=9.9e-27 Score=170.29 Aligned_cols=161 Identities=21% Similarity=0.277 Sum_probs=126.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEe-cCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
..+||+++|++|||||||+++++.+.+... .++.|.+.....+.+ ++..+.+.+|||+|++.+...+..+++.+++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999888776543 566666665555544 346789999999999988888889999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHHHHHH------hcCceEEEeecCCCCChHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~i~~ 162 (221)
+|+|+++..++..+..|+..+.... .+.|+++++||+|+.......+...+.. ...++++++||++|.|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 9999999999988888877766543 4789999999999864321122112111 1135688999999999999
Q ss_pred HHHHHHHHHhC
Q 027593 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
++.+|++.+..
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 103
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.95 E-value=2.4e-26 Score=166.37 Aligned_cols=155 Identities=29% Similarity=0.519 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||+++|+.+.+...+.++.. ..........+..+.+.+||+||+..+...+..+++.++++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999988887665555554 333445566778899999999999988888888889999999999
Q ss_pred eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcccc-------------cHHHHHHHHhcCc-eEEEeecCCCC
Q 027593 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KAKQVTFHRKKNL-QYYEISAKSNY 158 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-------------~~~~~~~~~~~~~-~~~~~s~~~~~ 158 (221)
|+++..+|.... .|...+.....+.|+++|+||+|+..... ..+...+....+. +++++|+++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 999999997765 57777777667899999999999865432 1233455666666 99999999999
Q ss_pred ChHHHHHHHHH
Q 027593 159 NFEKPFLYLAR 169 (221)
Q Consensus 159 ~i~~~~~~l~~ 169 (221)
|+++++..|.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999998875
No 104
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=7.9e-27 Score=169.38 Aligned_cols=155 Identities=17% Similarity=0.266 Sum_probs=119.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.+..++|+++|++|||||||++++..+ ....+.++.|..... ..+ ..+.+.+||+||++.+...+..++..++++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKT--LEY--EGYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 456799999999999999999997755 344555666643332 233 357899999999998888888899999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~ 162 (221)
++|+|+++..+|.....|+..+... ..+.|+++|+||+|+.+.....+..... ....++++++||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 9999999999998888777766442 2579999999999996543222222222 23457899999999999999
Q ss_pred HHHHHHH
Q 027593 163 PFLYLAR 169 (221)
Q Consensus 163 ~~~~l~~ 169 (221)
+|.+++.
T Consensus 166 l~~~l~~ 172 (173)
T cd04154 166 GIDWLVD 172 (173)
T ss_pred HHHHHhc
Confidence 9988763
No 105
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=1e-26 Score=170.44 Aligned_cols=161 Identities=32% Similarity=0.572 Sum_probs=146.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
..+||+++|.+|+|||+|..+|+.+.|...+.++++ +.+...+.+++....+.++||+|++.+......++.+++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 579999999999999999999999999999999998 7777788899999999999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccHHH-HHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~~~-~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
||+++++.||+.+..++..+.... ...|+++|+||+|+.. +.+..+. ..++...+++|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999999885543 4689999999999987 5666554 57788889999999999999999999999
Q ss_pred HHHHhC
Q 027593 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 998766
No 106
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=9.5e-29 Score=163.23 Aligned_cols=158 Identities=27% Similarity=0.547 Sum_probs=139.3
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 027593 17 VIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (221)
Q Consensus 17 ~v~G~~g~GKStli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 95 (221)
+++|.+++|||+|+-+|-.|.|. .....+.|+++..+.+.+++..+.+++|||+||+++++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 37899999999998877666653 34467899999999999999999999999999999999999999999999999999
Q ss_pred CChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-cccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 96 TARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
.+..||++...|+..+..+.. ...+++++||||+.. +.+. .+...++..+++||.++|+++|.+++.+|..|+..+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 999999999999999988753 577889999999954 4443 3566889999999999999999999999999999987
Q ss_pred CC
Q 027593 173 GD 174 (221)
Q Consensus 173 ~~ 174 (221)
+.
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 64
No 107
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=4e-26 Score=164.60 Aligned_cols=157 Identities=18% Similarity=0.299 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|.+|||||||+++|..+.+...+..+.. .......+.+..+.+.+|||+|+..+...+..++..++++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999998887655333221 12233455667889999999999887777777789999999999
Q ss_pred eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccccc---HHHH-HHHHhc-C-ceEEEeecCCCCChHHHHHH
Q 027593 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQV-TFHRKK-N-LQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~---~~~~-~~~~~~-~-~~~~~~s~~~~~~i~~~~~~ 166 (221)
|++++.+|..+. .|...+....++.|+++|+||+|+.+.... .+.. ...... . ..++++||+++.|++++|..
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence 999999999875 687777766668999999999999764332 1222 222222 2 37999999999999999999
Q ss_pred HHHHHh
Q 027593 167 LARKLA 172 (221)
Q Consensus 167 l~~~l~ 172 (221)
+.+.+.
T Consensus 159 ~~~~~~ 164 (166)
T cd01893 159 AQKAVL 164 (166)
T ss_pred HHHHhc
Confidence 988764
No 108
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=3e-26 Score=164.01 Aligned_cols=155 Identities=33% Similarity=0.590 Sum_probs=130.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (221)
||+++|++|||||||+++++.+.+...+.++.+ +.........+..+.+.+||+||+..+...+..+++.++++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999888877666666665 4455556666667899999999999888888889999999999999
Q ss_pred CCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593 95 VTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
+++..++.++..|...+..... ..|+++++||+|+.. ..... ....+....+.+++++|++++.|+++++.+|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999888888877654 899999999999976 33333 3345666667899999999999999999999875
No 109
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=8.4e-26 Score=167.37 Aligned_cols=159 Identities=28% Similarity=0.401 Sum_probs=128.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (221)
||+++|.+|||||||+++|+.+.+...+.++.+ ......+.+.+..+.+.+||++|+..+...+..++..+|++++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888776666654 3344456667777899999999999888888889999999999999
Q ss_pred CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc--cccHHH-HHHH-HhcCceEEEeecCCCCChHHHHHHHH
Q 027593 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKAKQ-VTFH-RKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~--~~~~~~-~~~~-~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
+++..+|..+..|...+.... .+.|+++++||+|+... ...... .+.. ...+.+++++|+++|.|++++|.+|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988877764 47999999999998542 222221 2222 23457899999999999999999999
Q ss_pred HHHhCC
Q 027593 169 RKLAGD 174 (221)
Q Consensus 169 ~~l~~~ 174 (221)
+.+...
T Consensus 160 ~~~~~~ 165 (198)
T cd04147 160 RQANLP 165 (198)
T ss_pred HHhhcc
Confidence 977643
No 110
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.94 E-value=2.1e-26 Score=165.25 Aligned_cols=151 Identities=24% Similarity=0.395 Sum_probs=116.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+|+++|++|||||||++++..+.+ ...+.++.|.+.... ....+.+.+|||||+..+...+..++..++++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999877653 455667777544332 235688999999999999999999999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCcccccHHHHH---HH--HhcCceEEEeecCCCCChHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVT---FH--RKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~~~~~~~~~~---~~--~~~~~~~~~~s~~~~~~i~~~~ 164 (221)
|+++..++.....|+..+.... .+.|+++++||+|+.......+... .. ....+.++++||++|.|++++|
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence 9999999988777777664431 4799999999999875432222111 11 1123468999999999999999
Q ss_pred HHHHH
Q 027593 165 LYLAR 169 (221)
Q Consensus 165 ~~l~~ 169 (221)
.+|..
T Consensus 157 ~~l~~ 161 (162)
T cd04157 157 QWLQA 161 (162)
T ss_pred HHHhc
Confidence 99864
No 111
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.94 E-value=5.3e-26 Score=165.17 Aligned_cols=154 Identities=25% Similarity=0.360 Sum_probs=119.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
...++|+++|++|+|||||+++++.+.+.. +.++.+.++... ....+.+.+||+||+..+...+..++..+++++
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~----~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 87 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEI----VYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVI 87 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEE----EECCeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 346899999999999999999988877764 456666554332 224689999999999988888889999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHH-H----HHhcCceEEEeecCCCCChHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-F----HRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~-~----~~~~~~~~~~~s~~~~~~i~~~ 163 (221)
+|+|+++..++.....++..+... ..+.|+++++||+|+.......+... + .....++++++||++|.|++++
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 999999999888777666665433 24689999999999865321122111 1 1234567999999999999999
Q ss_pred HHHHHH
Q 027593 164 FLYLAR 169 (221)
Q Consensus 164 ~~~l~~ 169 (221)
|.+|++
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999875
No 112
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.94 E-value=6.8e-26 Score=167.19 Aligned_cols=147 Identities=19% Similarity=0.318 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-----CeEEEEEEEeCCCcccccccccccccCccE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-----CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
+||+++|.+|+|||||+++|+.+.+...+.++.|.+.......+. +..+.+.+|||+|++.+...+..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877776666553 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhh--------------------cCCCCEEEEEeCCCCCcc-cccHH-----HHHHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRV--------------------CENIPIVLCGNKVDVKNR-QVKAK-----QVTFH 142 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~p~i~v~nk~D~~~~-~~~~~-----~~~~~ 142 (221)
+++|||++++.||+++..|+..+... ..+.|+++|+||+|+.+. ....+ ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999988653 136899999999998653 22221 23456
Q ss_pred HhcCceEEEeecCCCCCh
Q 027593 143 RKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 143 ~~~~~~~~~~s~~~~~~i 160 (221)
...+.+.+.+++.....+
T Consensus 161 ~~~~~~~i~~~c~~~~~~ 178 (202)
T cd04102 161 EQGNAEEINLNCTNGRLL 178 (202)
T ss_pred HhcCCceEEEecCCcccc
Confidence 778899888888865544
No 113
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.94 E-value=2.2e-26 Score=165.13 Aligned_cols=165 Identities=27% Similarity=0.476 Sum_probs=144.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
...+|+.|+|..++|||+|+-.+..+.|+..+.|+.. +.+...+.++ +..+.+.+|||+||+.|..++.--+..+|.+
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 4569999999999999999999999999999999998 6777788885 9999999999999999999888889999999
Q ss_pred EEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------ccH-HHHHHHHhcC-ceEEEee
Q 027593 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKN-LQYYEIS 153 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~~-~~~~~~~~~~-~~~~~~s 153 (221)
++||++.++.||+++. .|+..+..++++.|+++|++|.|+.+.. +.. +....+...| ..|++||
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 9999999999999975 8999999999999999999999997421 111 2345667777 5899999
Q ss_pred cCCCCChHHHHHHHHHHHhCCCC
Q 027593 154 AKSNYNFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 154 ~~~~~~i~~~~~~l~~~l~~~~~ 176 (221)
+++..|++++|+..+++....++
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999999998877654
No 114
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.94 E-value=1.8e-25 Score=163.24 Aligned_cols=161 Identities=26% Similarity=0.382 Sum_probs=130.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
.||+++|++|+|||||+++++.+.+...+.++.+... .......+..+.+.+||+||+..+...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999988877665555554332 334556667788999999999988888888999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
|+++..++..+..|...+.... .+.|+++++||+|+... .... +........+.+++++|++++.|+.+++.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999988877776643 46899999999998642 2222 233455666789999999999999999999999
Q ss_pred HHhCCC
Q 027593 170 KLAGDP 175 (221)
Q Consensus 170 ~l~~~~ 175 (221)
.+...+
T Consensus 161 ~~~~~~ 166 (180)
T cd04137 161 EIEKVE 166 (180)
T ss_pred HHHHhc
Confidence 887654
No 115
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.4e-26 Score=151.79 Aligned_cols=165 Identities=33% Similarity=0.543 Sum_probs=148.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.+|-.++|.-|+|||+|+.+|...+|.....+++|+......+.+.+..+.+++|||+|+++++...+.|++.+-+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
|||++.+.....+..|+..-+... ++.-+++++||.|++. +.+..+ ..+++...++.|.++|+++|.++++.|.+.+
T Consensus 90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence 999999988888889988876653 5677889999999986 444444 5588999999999999999999999999999
Q ss_pred HHHhCCCC
Q 027593 169 RKLAGDPN 176 (221)
Q Consensus 169 ~~l~~~~~ 176 (221)
+.+.++-+
T Consensus 170 kkiyqniq 177 (215)
T KOG0097|consen 170 KKIYQNIQ 177 (215)
T ss_pred HHHHHhhh
Confidence 99877543
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=1.2e-25 Score=165.56 Aligned_cols=155 Identities=17% Similarity=0.299 Sum_probs=118.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.++|+++|++|||||||++++..+.+. .+.++.+.+.. .+.+ .+..+.+||+||+..+...+..++..+++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~--~i~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSE--ELTI--GNIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999998776653 44555554332 2233 3578999999999888888888899999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHHHHHHh----------------cCceEEEe
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRK----------------KNLQYYEI 152 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~~~~~~----------------~~~~~~~~ 152 (221)
+|+|+++..++.....|...+.... .+.|+++++||+|+.......+....... ..+.++++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC 171 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence 9999999988887777777665432 46999999999998653222222222221 23578999
Q ss_pred ecCCCCChHHHHHHHHHH
Q 027593 153 SAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 153 s~~~~~~i~~~~~~l~~~ 170 (221)
||++|.|++++|.+|++.
T Consensus 172 Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 172 SVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EecCCCChHHHHHHHHhh
Confidence 999999999999999875
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=1.6e-25 Score=160.40 Aligned_cols=151 Identities=19% Similarity=0.303 Sum_probs=115.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (221)
+|+++|++|||||||+++|..+.+.. ..++.+.+... ... +....+.+||++|+..+...+..++..++++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~--~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEM--LQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEE--EEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999988877653 34566544332 222 346899999999999888888888999999999999
Q ss_pred CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH------HHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~------~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
+++..++.....|+..+... ..+.|+++|+||+|+.......+.. ......+++++++||++|.|++++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 99999888888777766543 2579999999999986422111111 112223457899999999999999998
Q ss_pred HHH
Q 027593 167 LAR 169 (221)
Q Consensus 167 l~~ 169 (221)
|++
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 864
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.93 E-value=2.1e-25 Score=160.89 Aligned_cols=150 Identities=23% Similarity=0.293 Sum_probs=117.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (221)
+|+++|++|||||||++++..+ +...+.++.|.+... +...+..+.+||+||+..+...+..++.+++++++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTK----LRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEE----EEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 5899999999999999997654 666677787765432 22356889999999999988889999999999999999
Q ss_pred CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHH------HHHHhc--CceEEEeecCCC------C
Q 027593 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKK--NLQYYEISAKSN------Y 158 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~------~~~~~~--~~~~~~~s~~~~------~ 158 (221)
+++..++.++..|+..+.... .+.|+++|+||+|+.+.....+.. .++... .+.++.+||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999888888776542 478999999999997643222211 122222 356788999998 8
Q ss_pred ChHHHHHHHHH
Q 027593 159 NFEKPFLYLAR 169 (221)
Q Consensus 159 ~i~~~~~~l~~ 169 (221)
|+++.|.||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999965
No 119
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=5.2e-25 Score=170.12 Aligned_cols=142 Identities=21% Similarity=0.391 Sum_probs=119.5
Q ss_pred CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-------------eEEEEEEEeCCCc
Q 027593 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-------------GKIRFYCWDTAGQ 72 (221)
Q Consensus 6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~g~ 72 (221)
+...+...+||+|+|..|||||||+++|+.+.+...+.++.|.++....+.+++ ..+.+.+|||+|+
T Consensus 14 ~~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq 93 (334)
T PLN00023 14 NGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH 93 (334)
T ss_pred ccCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence 456678899999999999999999999999998888889999888776666542 4688999999999
Q ss_pred ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc-------------CCCCEEEEEeCCCCCccc------
Q 027593 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKNRQ------ 133 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~i~v~nk~D~~~~~------ 133 (221)
+.+..++..++++++++|+|||+++..+|.++..|+..+.... .+.|++||+||+|+....
T Consensus 94 ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s 173 (334)
T PLN00023 94 ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSS 173 (334)
T ss_pred hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccc
Confidence 9999999999999999999999999999999999999987652 147999999999996531
Q ss_pred --ccHHHHHHHHhcCc
Q 027593 134 --VKAKQVTFHRKKNL 147 (221)
Q Consensus 134 --~~~~~~~~~~~~~~ 147 (221)
...+..+++...++
T Consensus 174 ~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 174 GNLVDAARQWVEKQGL 189 (334)
T ss_pred cccHHHHHHHHHHcCC
Confidence 12345577777664
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.93 E-value=3.5e-25 Score=158.38 Aligned_cols=150 Identities=21% Similarity=0.320 Sum_probs=112.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (221)
||+++|++|+|||||++++..+.+.. +.++.+.+... +++..+.+++|||||+..+...+..++..++++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVET----VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEE----EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999987776643 34555544332 23356889999999999888888999999999999999
Q ss_pred CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHHHHHHH
Q 027593 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+++..++.....+...+... ..+.|+++++||+|+.+.....+..... ...+.+++++|+++|.|++++|.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 99988876655554433221 2479999999999986533212211111 1223579999999999999999998
Q ss_pred HH
Q 027593 168 AR 169 (221)
Q Consensus 168 ~~ 169 (221)
++
T Consensus 156 ~~ 157 (158)
T cd04151 156 VN 157 (158)
T ss_pred hc
Confidence 75
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.93 E-value=2.1e-25 Score=160.87 Aligned_cols=151 Identities=24% Similarity=0.382 Sum_probs=112.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
+|+++|++|||||||+++++.... ...+.++.+.... .+...+..+.+|||||+..+...+..++..+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG----TIEVGNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE----EEEECCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999664322 1222333333332 222246899999999999888888889999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-------HhcCceEEEeecCCCCC
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-------RKKNLQYYEISAKSNYN 159 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-------~~~~~~~~~~s~~~~~~ 159 (221)
+++|+|+++..++.....|+..+... ..+.|+++++||+|+.......+..... ....++++++||++|.|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 99999999998888877777766553 2479999999999986543222222222 12356899999999999
Q ss_pred hHHHHHHHHH
Q 027593 160 FEKPFLYLAR 169 (221)
Q Consensus 160 i~~~~~~l~~ 169 (221)
+++++.+|+.
T Consensus 157 v~e~~~~l~~ 166 (167)
T cd04160 157 VREGIEWLVE 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 122
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.93 E-value=1.1e-24 Score=158.08 Aligned_cols=157 Identities=24% Similarity=0.429 Sum_probs=123.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+++||+++|+.||||||+++++..+... ...||.|........ .++.+.+||++|+..++..|..|+..++++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeee----CcEEEEEEeccccccccccceeecccccee
Confidence 477899999999999999999997655433 355666655544433 568899999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHH---HH---HhcCceEEEeecCCCCChH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT---FH---RKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~---~~---~~~~~~~~~~s~~~~~~i~ 161 (221)
|+|+|+++...+.+....+..+... ..+.|+++++||+|..+.....+... +. ....+.++.+|+.+|.|+.
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~ 165 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVD 165 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHH
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHH
Confidence 9999999998888777666666543 35799999999999876433222211 11 2346678999999999999
Q ss_pred HHHHHHHHHH
Q 027593 162 KPFLYLARKL 171 (221)
Q Consensus 162 ~~~~~l~~~l 171 (221)
+.+.||...+
T Consensus 166 e~l~WL~~~~ 175 (175)
T PF00025_consen 166 EGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999998764
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.93 E-value=1.1e-24 Score=155.79 Aligned_cols=150 Identities=23% Similarity=0.376 Sum_probs=117.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (221)
||+++|++|||||||+++++.+. ...+.++.+.+...... ....+.+||+||+..+...+..++..++++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999977766 34455666655544332 46789999999999988888999999999999999
Q ss_pred CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHHHHHHH
Q 027593 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+++..++.....|+..+... ..+.|+++++||+|+.......+..... ....++++++|+++|.|++++|.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 99999998887777766553 2578999999999987543222222221 2245689999999999999999888
Q ss_pred HH
Q 027593 168 AR 169 (221)
Q Consensus 168 ~~ 169 (221)
..
T Consensus 156 ~~ 157 (158)
T cd00878 156 LQ 157 (158)
T ss_pred hh
Confidence 64
No 124
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1.5e-24 Score=158.19 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=113.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-------CCCcccC------CceeEeeeEEEEe-----cCeEEEEEEEeCCCccccc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEP------TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFG 76 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~~~ 76 (221)
+|+++|++|+|||||+++|+... +...+.+ +.|++.......+ ++..+.+.+|||||+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999987632 1111222 3355555544333 5567889999999999998
Q ss_pred ccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEEEee
Q 027593 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEIS 153 (221)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~~~s 153 (221)
..+..++..+|++++|+|+++..++.....|..... .+.|+++|+||+|+.+........++....++ .++++|
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS 158 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence 888889999999999999998777666655543322 37899999999998643221112234444444 489999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 027593 154 AKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 154 ~~~~~~i~~~~~~l~~~l 171 (221)
|++|.|++++|.+|.+.+
T Consensus 159 a~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 159 AKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccCCCCHHHHHHHHHhhC
Confidence 999999999999998864
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=2.1e-24 Score=158.03 Aligned_cols=155 Identities=17% Similarity=0.266 Sum_probs=116.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.++|+++|++|||||||++++..+.+. .+.++.+.+... +...++.+.+||+||+..+...+..++..+++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEE----LAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEE----EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45699999999999999999998776553 334444443322 2224688999999999988888899999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH---H---------hcCceEEEeecCC
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH---R---------KKNLQYYEISAKS 156 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~---~---------~~~~~~~~~s~~~ 156 (221)
+|+|++++.++.....++..+... ..+.|+++++||+|+.......+..+.. . .....++.+|+++
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~ 169 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence 999999999988877777666542 2578999999999986432222211111 1 1234689999999
Q ss_pred CCChHHHHHHHHHH
Q 027593 157 NYNFEKPFLYLARK 170 (221)
Q Consensus 157 ~~~i~~~~~~l~~~ 170 (221)
+.|+++++.+|...
T Consensus 170 ~~g~~~~~~wl~~~ 183 (184)
T smart00178 170 RMGYGEGFKWLSQY 183 (184)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999764
No 126
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.92 E-value=5e-24 Score=153.86 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc---------cccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD---------GYYI 84 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~---------~~~~ 84 (221)
.+|+++|++|+|||||+++++.+.+.. .+..+.+.......+...++.+.+|||||+........ ....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV--APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc--CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999988765532 22233333333333344568999999999743111000 1112
Q ss_pred CccEEEEEEeCCChhhh--ccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHH
Q 027593 85 HGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 85 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 162 (221)
..+++++|+|+++..++ .....|+..+.....+.|+++|+||+|+.......+...+....+.+++++||++|.|+++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence 35899999999987654 4445677766655558999999999999653322222344444567899999999999999
Q ss_pred HHHHHHHHH
Q 027593 163 PFLYLARKL 171 (221)
Q Consensus 163 ~~~~l~~~l 171 (221)
++.+|.+.|
T Consensus 159 l~~~l~~~~ 167 (168)
T cd01897 159 VKNKACELL 167 (168)
T ss_pred HHHHHHHHh
Confidence 999999876
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.92 E-value=5.7e-24 Score=151.71 Aligned_cols=150 Identities=24% Similarity=0.415 Sum_probs=116.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 027593 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (221)
Q Consensus 16 i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 95 (221)
|+++|++|||||||++++..+.+...+.++.+...... . .+.+.+.+||+||+..+...+..++..++++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~--~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKV--T--KGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEE--E--ECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 79999999999999999888888777777776554432 2 2348899999999998888888999999999999999
Q ss_pred CChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 96 TARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
++..++.....|+..+... ..+.|+++++||+|+............ ......+++++|+++|.|+++++.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence 9998887777666665432 247899999999998654322221111 122346789999999999999999886
Q ss_pred H
Q 027593 169 R 169 (221)
Q Consensus 169 ~ 169 (221)
+
T Consensus 158 ~ 158 (159)
T cd04159 158 K 158 (159)
T ss_pred h
Confidence 5
No 128
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.92 E-value=5.8e-24 Score=145.38 Aligned_cols=157 Identities=20% Similarity=0.356 Sum_probs=127.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
++++|.++|..||||||++++ +.+.......|+.|........ ..+.+.+||++|+...+..|..||..+|++|+
T Consensus 15 rE~riLiLGLdNsGKTti~~k-l~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKK-LLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred heeEEEEEecCCCCchhHHHH-hcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 389999999999999999999 5566667777787766655544 67899999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCCCcccccHH------HHHHHHhcCceEEEeecCCCCChHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~i~v~nk~D~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~i~~~ 163 (221)
|+|++++..|++....+..+.. ...+.|+++++||.|+...-...+ .......+.++.+.||+.+|+++.+-
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence 9999999998776654444322 234789999999999985322221 12344667889999999999999999
Q ss_pred HHHHHHHHhC
Q 027593 164 FLYLARKLAG 173 (221)
Q Consensus 164 ~~~l~~~l~~ 173 (221)
+.||...++.
T Consensus 170 idWL~~~l~~ 179 (185)
T KOG0073|consen 170 IDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 129
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=4.8e-24 Score=154.68 Aligned_cols=156 Identities=17% Similarity=0.312 Sum_probs=114.2
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
...+.++|+++|++|||||||++++....+ ..+.++.|.+.... .. .+..+.+||++|+..+...+..+++.+++
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~~~i--~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNIKTV--QS--DGFKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcceEEE--EE--CCEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 345589999999999999999999665443 33455666444332 22 35789999999998887777888899999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHHHhc-----CceEEEeecCCCCChH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFE 161 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~ 161 (221)
+++|+|+++..++.....+...+... ..+.|+++++||+|+.......+........ ...++++||++|.|++
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 99999999988887777666555433 2479999999999986532222211111111 1247899999999999
Q ss_pred HHHHHHHH
Q 027593 162 KPFLYLAR 169 (221)
Q Consensus 162 ~~~~~l~~ 169 (221)
++|++|++
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999975
No 130
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=1.5e-23 Score=162.16 Aligned_cols=167 Identities=15% Similarity=0.061 Sum_probs=116.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc--------ccccccCc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHG 86 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~~ 86 (221)
+|+++|.+|||||||+|++++.. .....+.+++|..........++..+.+|||||....... ...++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~-~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK-ISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc-EeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999976544 3344556666666554444444567999999997543211 23456889
Q ss_pred cEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH-HHHHHHhcCc-eEEEeecCCCCChHHHH
Q 027593 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~-~~~~~~~~~~-~~~~~s~~~~~~i~~~~ 164 (221)
|++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.......+ ...+....+. +++++||++|.|+++++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 9999999999876653 333333333 3789999999999964322222 2233333333 78999999999999999
Q ss_pred HHHHHHHhCCCCCccccCCCCC
Q 027593 165 LYLARKLAGDPNLHFVESPALA 186 (221)
Q Consensus 165 ~~l~~~l~~~~~~~~~~ep~~~ 186 (221)
..|...+...|.++..+..+..
T Consensus 157 ~~l~~~l~~~~~~~~~~~~t~~ 178 (270)
T TIGR00436 157 AFIEVHLPEGPFRYPEDYVTDQ 178 (270)
T ss_pred HHHHHhCCCCCCCCCCcccCCC
Confidence 9999998877766644444433
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.92 E-value=7.6e-24 Score=153.15 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=108.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-EEEEEEeCCCccc----cccccccc---ccCc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEK----FGGLRDGY---YIHG 86 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~----~~~~~~~~---~~~~ 86 (221)
+|+++|.+|||||||++++..... ......+.++......+...+ ..+.+|||||... .......+ +..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 689999999999999999765432 122223334333333333233 4899999999642 12222333 3459
Q ss_pred cEEEEEEeCCCh-hhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHHHH-HHHHh-cCceEEEeecCCCCCh
Q 027593 87 QCAIIMFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRK-KNLQYYEISAKSNYNF 160 (221)
Q Consensus 87 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~-~~~~~~~~s~~~~~~i 160 (221)
|++++|+|+++. .++..+..|.+.+.... ...|+++|+||+|+.......+.. ..... .+.+++.+|++++.|+
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 999999999999 78888888888876653 368999999999986543333322 33344 2678999999999999
Q ss_pred HHHHHHHHHH
Q 027593 161 EKPFLYLARK 170 (221)
Q Consensus 161 ~~~~~~l~~~ 170 (221)
+++|.+|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998874
No 132
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=3.3e-23 Score=164.58 Aligned_cols=170 Identities=17% Similarity=0.244 Sum_probs=118.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc-ccccc-------cc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRD-------GY 82 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~~-------~~ 82 (221)
.+.++|+++|.+|||||||+|+|++..+ ..+.+..++|+......+...+..+.+|||||.... ..... ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~-~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKL-SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCce-eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 4567999999999999999999876554 344556666666554444445568899999998532 22211 23
Q ss_pred ccCccEEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhc--CceEEEeecCCCCC
Q 027593 83 YIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEISAKSNYN 159 (221)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~ 159 (221)
+..+|++++|+|+.+ ++.... .|+..+... +.|.++|+||+|+.... ..+..+..... ...++++||++|.|
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGKN 203 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCccC
Confidence 678999999999765 455543 344444332 56778999999986532 22233333333 25799999999999
Q ss_pred hHHHHHHHHHHHhCCCCCccccCCCCC
Q 027593 160 FEKPFLYLARKLAGDPNLHFVESPALA 186 (221)
Q Consensus 160 i~~~~~~l~~~l~~~~~~~~~~ep~~~ 186 (221)
+++++.+|...+...|.++.-|..+..
T Consensus 204 v~eL~~~L~~~l~~~~~~~~~~~~td~ 230 (339)
T PRK15494 204 IDGLLEYITSKAKISPWLYAEDDITDL 230 (339)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 999999999999888877754444433
No 133
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=1.5e-25 Score=155.30 Aligned_cols=163 Identities=32% Similarity=0.570 Sum_probs=149.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
..-+|++|+|..++||||++.+|+.|.|-..+..++|++.-..++.+.+..+++.+||++|++++......|++.+++.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 34699999999999999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
+||+-+|+.||+....|.+.+......+|.++|-||.|+.+. ....+ ...+++.++..++.+|++...++..+|..|+
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA 177 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999764 44443 3467888899999999999999999999999
Q ss_pred HHHhC
Q 027593 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
..+.+
T Consensus 178 eK~~q 182 (246)
T KOG4252|consen 178 EKLTQ 182 (246)
T ss_pred HHHHH
Confidence 88765
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.90 E-value=2.9e-22 Score=142.62 Aligned_cols=156 Identities=27% Similarity=0.469 Sum_probs=119.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
.+||+++|++|+|||||+++++.+.+...+.++.+.+.........+....+.+||+||+..+...+..++..++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999888876555555666665555566666568999999999988888888888889999999
Q ss_pred EeCCCh-hhhccHH-HHHHHHHhhcC-CCCEEEEEeCCCCCcccccHHHH-HHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 93 FDVTAR-LTYKNVP-TWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 93 ~d~~~~-~s~~~~~-~~~~~~~~~~~-~~p~i~v~nk~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
+|.... .++.... .|...+..... +.|+++++||+|+.......... .+......+++++|+..+.|+.+++.+|-
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 998877 6665554 56666655544 78999999999997643233222 23333356799999999999999988763
No 135
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=2.6e-23 Score=145.83 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc------ccccc--cC
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IH 85 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~ 85 (221)
++|+++|.|+||||||+|++++.+ ......+|+|.......+...+..+.++|+||....... ...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 689999999999999999966544 446778888888888777766689999999995433222 22333 57
Q ss_pred ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 164 (221)
.|++++|+|+++.+.-..+ ..++... ++|+++++||+|... .....+...+...++++++++||.++.|+++++
T Consensus 79 ~D~ii~VvDa~~l~r~l~l---~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYL---TLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHH---HHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred CCEEEEECCCCCHHHHHHH---HHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 8999999999986433322 2233332 899999999999864 334445667777889999999999999999988
Q ss_pred HHH
Q 027593 165 LYL 167 (221)
Q Consensus 165 ~~l 167 (221)
..|
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 765
No 136
>PTZ00099 rab6; Provisional
Probab=99.90 E-value=4.2e-22 Score=144.42 Aligned_cols=141 Identities=31% Similarity=0.553 Sum_probs=121.4
Q ss_pred CCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc
Q 027593 36 GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115 (221)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (221)
+.|...+.+|.|.++....+.+++..+.+.+|||+|++.+...+..+++.++++++|||++++.+|..+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45667788899999988888889999999999999999999999999999999999999999999999999999886654
Q ss_pred -CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhCCCC
Q 027593 116 -ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 116 -~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~ 176 (221)
+..|+++|+||+|+.. +.+.. +....+...+..++++||++|.|++++|.+|++.+...+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 5789999999999964 33333 3446667778899999999999999999999999876553
No 137
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1e-22 Score=142.80 Aligned_cols=162 Identities=24% Similarity=0.352 Sum_probs=133.4
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
......+.+|+++|..++||||++.++-.+..... .||.|.......+ .++++++||.+|+..++..|..|+.+.
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t 85 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNT 85 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCC
Confidence 34577899999999999999999999777777655 7888877776666 589999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCC
Q 027593 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYN 159 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~ 159 (221)
+++|+|+|.+|++.+.+.+..+..+.... ...|+++++||.|+++.-...+.. .........+..++|.+|.|
T Consensus 86 ~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 86 QGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred cEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 99999999999999988877766665554 588999999999998754433222 12223456788899999999
Q ss_pred hHHHHHHHHHHHhC
Q 027593 160 FEKPFLYLARKLAG 173 (221)
Q Consensus 160 i~~~~~~l~~~l~~ 173 (221)
+.+.++++...+..
T Consensus 166 L~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
No 138
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.7e-22 Score=159.51 Aligned_cols=160 Identities=18% Similarity=0.130 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-eEEEEEEEeCCCccccc----ccccc---cccC
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFG----GLRDG---YYIH 85 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~----~~~~~---~~~~ 85 (221)
..|+|+|.++||||||+++++... +.....+++|..+....+.. ....+.+||+||..... .+... .+..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 579999999999999999976543 33455666777777665543 45679999999975321 22222 3557
Q ss_pred ccEEEEEEeCCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccc-cHHHH-HHHHhcCceEEEeecCCCCCh
Q 027593 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-KAKQV-TFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~-~~~~~-~~~~~~~~~~~~~s~~~~~~i 160 (221)
++++++|+|+++..+++.+..|...+..+. .++|+++|+||+|+..... ..+.. .+....+.+++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 899999999998878888888988887654 3689999999999865332 22222 233445678999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 027593 161 EKPFLYLARKLAGDP 175 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~ 175 (221)
++++.+|.+.+...+
T Consensus 317 ~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 317 DELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999876543
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.89 E-value=1e-22 Score=143.05 Aligned_cols=133 Identities=19% Similarity=0.202 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc-----cccccccccccCccEE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRDGYYIHGQCA 89 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~ 89 (221)
||+++|++|||||||+++|..+.+. +.++.+. .+ .-.+|||||+. .+..... .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~-----~~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EY-----NDGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EE-----cCeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999997765431 2222221 11 11689999973 2232222 47899999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHH-HHHHHhcCc-eEEEeecCCCCChHHHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l 167 (221)
++|+|++++.++... .|.... ..|+++++||+|+.+.....+. .++....+. +++++||++|.|++++|.+|
T Consensus 67 ilv~d~~~~~s~~~~-~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 67 ALVQSATDPESRFPP-GFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred EEEecCCCCCcCCCh-hHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 999999999998663 444322 3499999999998654333332 344555555 79999999999999999887
Q ss_pred H
Q 027593 168 A 168 (221)
Q Consensus 168 ~ 168 (221)
+
T Consensus 141 ~ 141 (142)
T TIGR02528 141 N 141 (142)
T ss_pred h
Confidence 4
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.89 E-value=2e-22 Score=150.08 Aligned_cols=156 Identities=15% Similarity=0.081 Sum_probs=107.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-eEEEEEEEeCCCccccccc--------ccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGL--------RDG 81 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~--------~~~ 81 (221)
.+.++|+|+|++|||||||+++++.+..... ...+.+.......+.. +...+.+|||||....... ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE--DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccC--CccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence 4458999999999999999999776653221 1122222222222221 2238999999997321110 011
Q ss_pred cccCccEEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 160 (221)
.+..+|++++|+|++++.++.....|...+.... .+.|+++|+||+|+....... ........+++++|++++.|+
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEGL 193 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCCH
Confidence 2568899999999999988877777776665543 468999999999986533221 334455678999999999999
Q ss_pred HHHHHHHHHHH
Q 027593 161 EKPFLYLARKL 171 (221)
Q Consensus 161 ~~~~~~l~~~l 171 (221)
++++.+|...|
T Consensus 194 ~~l~~~L~~~~ 204 (204)
T cd01878 194 DELLEAIEELL 204 (204)
T ss_pred HHHHHHHHhhC
Confidence 99999988753
No 141
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.89 E-value=3.2e-22 Score=143.65 Aligned_cols=149 Identities=15% Similarity=0.065 Sum_probs=98.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC---CCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
.|+++|.+|||||||+++|+.. .+.....+....+.......+.. +..+.+|||||++.+......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 6899999999999999997642 22211112222222222233321 4689999999998887666667889999999
Q ss_pred EEeCCCh---hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc----cHHHHHHHHh---cCceEEEeecCCCCChH
Q 027593 92 MFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK---KNLQYYEISAKSNYNFE 161 (221)
Q Consensus 92 v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~----~~~~~~~~~~---~~~~~~~~s~~~~~~i~ 161 (221)
|+|+++. .++..+ ..+ ......|+++++||+|+..... ..+..+.... .+.+++++|++++.|++
T Consensus 81 V~d~~~~~~~~~~~~~----~~~-~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 81 VVAADEGIMPQTREHL----EIL-ELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EEECCCCccHhHHHHH----HHH-HHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHH
Confidence 9999873 222222 111 1112359999999999965321 1122222222 46789999999999999
Q ss_pred HHHHHHHH
Q 027593 162 KPFLYLAR 169 (221)
Q Consensus 162 ~~~~~l~~ 169 (221)
+++..+.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99988754
No 142
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.89 E-value=7.2e-22 Score=148.60 Aligned_cols=165 Identities=34% Similarity=0.518 Sum_probs=133.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
++.+||+++|+.|||||||+++|..+.+...+.++.+..............+.+.+|||+|++.++..+..++..+++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 45599999999999999999999999998888888887777777766666889999999999999999999999999999
Q ss_pred EEEeCCCh-hhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccc-------------cHHH-HHHHHh---cCceEEE
Q 027593 91 IMFDVTAR-LTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV-------------KAKQ-VTFHRK---KNLQYYE 151 (221)
Q Consensus 91 ~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~-------------~~~~-~~~~~~---~~~~~~~ 151 (221)
+|+|..+. .+++....|...+.... ...|+++++||+|+..... .... ...... ....++.
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 99999994 45555678998888876 3799999999999976432 1111 111111 1334899
Q ss_pred eecC--CCCChHHHHHHHHHHHhCCC
Q 027593 152 ISAK--SNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 152 ~s~~--~~~~i~~~~~~l~~~l~~~~ 175 (221)
+|+. .+.++.++|..+.+.+....
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHHhh
Confidence 9999 99999999999999886543
No 143
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=6.6e-22 Score=161.64 Aligned_cols=153 Identities=23% Similarity=0.248 Sum_probs=113.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc--------cccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 82 (221)
.+.++|+++|++|+|||||+|+|+... .......+|++.+.....+...+..+.+|||||....... ...+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~-~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQD-RAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCC-CcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 356899999999999999999976543 2334455676766665555445677899999998654332 2356
Q ss_pred ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHH
Q 027593 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 162 (221)
+..+|++++|+|++++.++... |+..+.. .+.|+++|+||+|+... +...+....+++++.+|+++ .|+++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHH
Confidence 7899999999999988776654 5544432 37899999999999643 11233455667889999997 69999
Q ss_pred HHHHHHHHHhC
Q 027593 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
++..|.+.+..
T Consensus 351 ~~~~L~~~i~~ 361 (442)
T TIGR00450 351 LVDLLTQKINA 361 (442)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 144
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.88 E-value=3.8e-22 Score=147.36 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------cCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 79 (221)
-+|+++|.+|+|||||+++|+. +.+...+ ..+.|.+.......+.++...+.+|||||+..+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3899999999999999999886 4443332 2346667777666777778899999999999998888
Q ss_pred cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc---HHHHHHH-------HhcCceE
Q 027593 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFH-------RKKNLQY 149 (221)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~---~~~~~~~-------~~~~~~~ 149 (221)
..+++.+|++++|+|+++.. +.....++..... .+.|+++|+||+|+...... .+..... ...++++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV 159 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence 89999999999999998742 2222233333222 37899999999999643221 1112222 2236789
Q ss_pred EEeecCCCCChHH
Q 027593 150 YEISAKSNYNFEK 162 (221)
Q Consensus 150 ~~~s~~~~~~i~~ 162 (221)
+++|+++|.|+.+
T Consensus 160 v~~Sa~~g~~~~~ 172 (194)
T cd01891 160 LYASAKNGWASLN 172 (194)
T ss_pred EEeehhccccccc
Confidence 9999999988743
No 145
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.3e-21 Score=157.45 Aligned_cols=162 Identities=15% Similarity=0.105 Sum_probs=118.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-EEEEEEeCCCccccccc-------ccccccCc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGL-------RDGYYIHG 86 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~-------~~~~~~~~ 86 (221)
.|+|+|.+|||||||+|+++..+ +...+.+++|..+....+...+ ..+.++||||....... ....+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 79999999999999999976543 3567778888888877665443 46999999997642211 11236788
Q ss_pred cEEEEEEeCC---ChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHHHH-HHHHhcC--ceEEEeecCCC
Q 027593 87 QCAIIMFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKN--LQYYEISAKSN 157 (221)
Q Consensus 87 ~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~~~--~~~~~~s~~~~ 157 (221)
+++++|+|++ ....+.....|...+.... ..+|.++|+||+|+.......+.. .+....+ ..++.+||+++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 9999999988 4456666677777766543 368999999999986533222222 2333333 46899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCc
Q 027593 158 YNFEKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~~~~~~ 178 (221)
.++++++..|...+...+.++
T Consensus 319 ~GIdeLl~~I~~~L~~~~~~~ 339 (390)
T PRK12298 319 LGVKELCWDLMTFIEENPREE 339 (390)
T ss_pred cCHHHHHHHHHHHhhhCcccC
Confidence 999999999999887776554
No 146
>PRK04213 GTP-binding protein; Provisional
Probab=99.88 E-value=4.7e-22 Score=147.70 Aligned_cols=153 Identities=20% Similarity=0.182 Sum_probs=99.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCc-----------ccccccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-----------EKFGGLR 79 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~~~ 79 (221)
...++|+++|++|||||||+|++.++.+. ....++++......... .+.+|||||. +.++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVR--VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 45689999999999999999998766543 23345666665544332 5899999993 4444444
Q ss_pred ccccc----CccEEEEEEeCCChhhhcc---------H-HHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhc
Q 027593 80 DGYYI----HGQCAIIMFDVTARLTYKN---------V-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK 145 (221)
Q Consensus 80 ~~~~~----~~~~~i~v~d~~~~~s~~~---------~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~ 145 (221)
..++. .++++++|+|.+....+.. . ..+...+.. .+.|+++|+||+|+.... .....++....
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~ 157 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-DEVLDEIAERL 157 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-HHHHHHHHHHh
Confidence 44443 3467788888764322100 0 011111211 379999999999986433 11222333333
Q ss_pred Cc---------eEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 146 NL---------QYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 146 ~~---------~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
++ +++++||++| |+++++.+|.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred cCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 43 5799999999 999999999998654
No 147
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=1.1e-21 Score=161.15 Aligned_cols=151 Identities=18% Similarity=0.188 Sum_probs=112.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc--------cccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 82 (221)
...++|+++|.+|+|||||+|+|+.... ....+..+++.+.....+...+..+.+|||||...+... ...+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEER-AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3468999999999999999999775442 223445666666555444445578899999998654332 2235
Q ss_pred ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHH
Q 027593 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 162 (221)
+..+|++++|+|++++.++.....|.. ..+.|+++|+||+|+....... ...+.+++++|+++|.|+++
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~ 360 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDE 360 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHH
Confidence 788999999999999887775544443 3478999999999996432111 33456899999999999999
Q ss_pred HHHHHHHHHhC
Q 027593 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
++.+|.+.+..
T Consensus 361 L~~~L~~~l~~ 371 (449)
T PRK05291 361 LREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHhh
Confidence 99999998753
No 148
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=4.5e-21 Score=144.64 Aligned_cols=171 Identities=16% Similarity=0.133 Sum_probs=128.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc--------cc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DG 81 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~ 81 (221)
.++.--|+++|.|++|||||+|+ +.|......++.+.+|+......+...+.++.++||||....+... ..
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~-l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNA-LVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHH-HhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 46677899999999999999999 6677778889999999999998888889999999999977654332 22
Q ss_pred cccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc-HHHHHHHH--hcCceEEEeecCCCC
Q 027593 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHR--KKNLQYYEISAKSNY 158 (221)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~-~~~~~~~~--~~~~~~~~~s~~~~~ 158 (221)
.+..+|++++|+|+.....-. ....++.+.. .+.|+++++||.|....... ....+... ......+++||+.|.
T Consensus 82 sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPG-DEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred HhccCcEEEEEEeccccCCcc-HHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 377899999999998754432 1222333332 35799999999998764442 22222222 223479999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPA 184 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~ 184 (221)
+++.+...+...|..+|.++.-|.-+
T Consensus 159 n~~~L~~~i~~~Lpeg~~~yp~d~it 184 (298)
T COG1159 159 NVDTLLEIIKEYLPEGPWYYPEDQIT 184 (298)
T ss_pred CHHHHHHHHHHhCCCCCCcCChhhcc
Confidence 99999999999999988877444333
No 149
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.88 E-value=2.3e-21 Score=138.14 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc--------ccccccC
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~ 85 (221)
++|+++|++|+|||||+++++.... ....+..+++.......+...+..+.+|||||...+... ....+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR-AIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce-EeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999765543 222334455544444444434578999999997655332 1234678
Q ss_pred ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 165 (221)
++++++|+|++++.+..+...+.. ....|+++|+||+|+...... .......+++.+|++++.|+++++.
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHH
Confidence 999999999998877666554433 347999999999998754322 3344467899999999999999999
Q ss_pred HHHHHH
Q 027593 166 YLARKL 171 (221)
Q Consensus 166 ~l~~~l 171 (221)
+|...+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 988743
No 150
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.87 E-value=3.1e-21 Score=152.30 Aligned_cols=156 Identities=16% Similarity=0.166 Sum_probs=112.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-EEEEEEeCCCccccc----cccccc---ccC
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFG----GLRDGY---YIH 85 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~----~~~~~~---~~~ 85 (221)
..|+|+|.++||||||++++..... .....+++|..+....+...+ ..+.+||+||..... .+...+ +..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 6799999999999999999765442 233444555555554444333 789999999975322 222333 446
Q ss_pred ccEEEEEEeCCCh---hhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHHHH-HHHHhcCceEEEeecCCCC
Q 027593 86 GQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNY 158 (221)
Q Consensus 86 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~ 158 (221)
++++++|+|+++. .++.++..|...+.... ..+|+++|+||+|+.......+.. .+....+.+++++||+++.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence 8999999999976 67777777777766543 478999999999997543222222 3444557789999999999
Q ss_pred ChHHHHHHHHHHH
Q 027593 159 NFEKPFLYLARKL 171 (221)
Q Consensus 159 ~i~~~~~~l~~~l 171 (221)
|+++++.+|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 151
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.87 E-value=3.5e-21 Score=137.48 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=102.1
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc------ccccc--cCccEE
Q 027593 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCA 89 (221)
Q Consensus 18 v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~ 89 (221)
|+|.+|+|||||++++........ ...+++.......+...+..+.+|||||+..+... +..++ ..++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999776543322 23344443333333333468999999998766542 34445 489999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
++|+|+++..... .+...+.. .++|+++++||+|+.+.. ...+...+....+++++++|+.++.|+++++..+.
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 9999998764422 33333332 378999999999996543 22333355566688999999999999999999988
Q ss_pred HHH
Q 027593 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
+.+
T Consensus 154 ~~~ 156 (158)
T cd01879 154 ELA 156 (158)
T ss_pred HHh
Confidence 753
No 152
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.87 E-value=1.5e-21 Score=133.04 Aligned_cols=114 Identities=28% Similarity=0.536 Sum_probs=89.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
||+|+|++|||||||+++|+.+... .......+.++......+......+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999998887765 12334455555555666777777799999999998888777779999999999
Q ss_pred EeCCChhhhccHHH---HHHHHHhhcCCCCEEEEEeCCC
Q 027593 93 FDVTARLTYKNVPT---WHRDLCRVCENIPIVLCGNKVD 128 (221)
Q Consensus 93 ~d~~~~~s~~~~~~---~~~~~~~~~~~~p~i~v~nk~D 128 (221)
||+++..++..+.. |+..+....++.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999988754 4555555556899999999998
No 153
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.87 E-value=3e-21 Score=139.22 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=103.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
.|+|+|++|+|||||+++|+.+.+.....+....+......... +....+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 59999999999999999988776654322222222222222222 13678999999999888777777889999999999
Q ss_pred eCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH--HHH-HHH------HhcCceEEEeecCCCCChHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQV-TFH------RKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~--~~~-~~~------~~~~~~~~~~s~~~~~~i~~~~ 164 (221)
|+++........ .+..+.. .+.|+++|+||+|+....... ... ... ....++++++|++++.|+.+++
T Consensus 82 d~~~~~~~~~~~-~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence 998753221111 1122222 378999999999986432111 111 111 1124689999999999999999
Q ss_pred HHHHHHH
Q 027593 165 LYLARKL 171 (221)
Q Consensus 165 ~~l~~~l 171 (221)
++|.+..
T Consensus 159 ~~l~~~~ 165 (168)
T cd01887 159 EAILLLA 165 (168)
T ss_pred HHHHHhh
Confidence 9998753
No 154
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=8.4e-21 Score=148.71 Aligned_cols=166 Identities=16% Similarity=0.144 Sum_probs=112.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc--------ccccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGY 82 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~ 82 (221)
++.-.|+|+|++|||||||+|++++.. .....+.+.++...........+..+.+|||||...... .....
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~-~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCc-eeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 456779999999999999999966443 344455555666555544444557899999999754332 22234
Q ss_pred ccCccEEEEEEeCCChhhhccHHHH-HHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHH-HHHHhc-CceEEEeecCCCC
Q 027593 83 YIHGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNY 158 (221)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~-~~~~~~-~~~~~~~s~~~~~ 158 (221)
+..+|++++|+|+++. +.....+ ...+.. .+.|+++|+||+|+.. ........ .+.... ...++++|++++.
T Consensus 82 ~~~~D~il~vvd~~~~--~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 82 LKDVDLVLFVVDADEK--IGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred HhcCCEEEEEEeCCCC--CChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 6789999999999883 2222222 222221 2689999999999973 22222222 232322 3679999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCcccc
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVE 181 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ 181 (221)
|+++++..|...+...|.++..+
T Consensus 158 gv~~L~~~L~~~l~~~~~~y~~~ 180 (292)
T PRK00089 158 NVDELLDVIAKYLPEGPPYYPED 180 (292)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999888777655433
No 155
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.87 E-value=5.7e-21 Score=134.77 Aligned_cols=150 Identities=39% Similarity=0.662 Sum_probs=116.1
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCC
Q 027593 18 IVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96 (221)
Q Consensus 18 v~G~~g~GKStli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 96 (221)
|+|++|+|||||+++++.... .....++. ................+.+||++|+..+......++..++++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999776665 23333444 5666666666667889999999998888777788889999999999999
Q ss_pred ChhhhccHHHHH--HHHHhhcCCCCEEEEEeCCCCCcccccHH---HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 97 ARLTYKNVPTWH--RDLCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 97 ~~~s~~~~~~~~--~~~~~~~~~~p~i~v~nk~D~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
+..++.....|. ..........|+++++||+|+........ ..........+++.+|+..+.|+++++.+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999988887762 22233346899999999999876443332 2234455578999999999999999998875
No 156
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=3.8e-21 Score=162.33 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=116.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC-------CCCccc------CCceeEeeeEEEEe-----cCeEEEEEEEeCCCcccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGE-------FEKKYE------PTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~~ 75 (221)
-+|+++|+.++|||||+++|+... +...+. ...|.+.......+ ++..+.+.+|||||+..|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999988642 112222 23477777655544 355689999999999999
Q ss_pred cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEEEe
Q 027593 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI 152 (221)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~~~ 152 (221)
...+..++..+|++++|+|+++...+.....|..... .+.|+++|+||+|+..........++....++ .++++
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~v 160 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILA 160 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEe
Confidence 8888889999999999999999877766666654433 37899999999998653222112233333444 48999
Q ss_pred ecCCCCChHHHHHHHHHHHh
Q 027593 153 SAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 153 s~~~~~~i~~~~~~l~~~l~ 172 (221)
||++|.|+++++.+|.+.+.
T Consensus 161 SAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 161 SAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred eccCCCCHHHHHHHHHHhCC
Confidence 99999999999999998653
No 157
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=8.8e-21 Score=153.41 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=116.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCccccc----cccccc---ccCc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG----GLRDGY---YIHG 86 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~----~~~~~~---~~~~ 86 (221)
.|+|+|.++||||||+++++... +.....+++|..+....+... ...+.+||+||..... .+...+ +..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 89999999999999999976544 233455667777765555433 5789999999975321 222333 4568
Q ss_pred cEEEEEEeCCCh---hhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593 87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 87 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 160 (221)
+++++|+|+++. .++.+...|...+..+. ..+|.++|+||+|+.... .....+....+.+++++||+++.|+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e~l~~l~~~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE--ENLEEFKEKLGPKVFPISALTGQGL 315 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--HHHHHHHHHhCCcEEEEeCCCCCCH
Confidence 999999999864 56666677777776653 378999999999985321 2223344445578999999999999
Q ss_pred HHHHHHHHHHHhCCCCC
Q 027593 161 EKPFLYLARKLAGDPNL 177 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~~~ 177 (221)
++++.+|.+.+...+..
T Consensus 316 ~eL~~~L~~~l~~~~~~ 332 (424)
T PRK12297 316 DELLYAVAELLEETPEF 332 (424)
T ss_pred HHHHHHHHHHHHhCccc
Confidence 99999999988776643
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=3.6e-21 Score=159.60 Aligned_cols=153 Identities=22% Similarity=0.220 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc--------ccccccccccC
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIH 85 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~ 85 (221)
.+|+|+|.+|||||||+|+|+.+.. .....++|++.......+...+..+.+|||||... +...+..++..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 6899999999999999999776543 34456777777666655554556789999999763 22233456789
Q ss_pred ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHHHH
Q 027593 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~ 164 (221)
+|++++|+|+++..++.. ..+...+.. .+.|+++|+||+|+..... +.... ...++ ..+++||++|.|++++|
T Consensus 118 aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~-~~~g~~~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 118 ADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEA--DAAAL-WSLGLGEPHPVSALHGRGVGDLL 191 (472)
T ss_pred CCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccch--hhHHH-HhcCCCCeEEEEcCCCCCcHHHH
Confidence 999999999998766543 233444433 3799999999999864321 11111 12222 34789999999999999
Q ss_pred HHHHHHHhC
Q 027593 165 LYLARKLAG 173 (221)
Q Consensus 165 ~~l~~~l~~ 173 (221)
.+|+..+..
T Consensus 192 ~~i~~~l~~ 200 (472)
T PRK03003 192 DAVLAALPE 200 (472)
T ss_pred HHHHhhccc
Confidence 999998754
No 159
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.86 E-value=3.4e-21 Score=139.95 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=104.2
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCcccc----cccc---cccccCccEE
Q 027593 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKF----GGLR---DGYYIHGQCA 89 (221)
Q Consensus 18 v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~----~~~~---~~~~~~~~~~ 89 (221)
++|++|||||||++++..... ......+++.......+... +..+.+|||||.... .... ..++..++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999776543 22233344444433333333 678899999996431 2222 2346789999
Q ss_pred EEEEeCCCh------hhhccHHHHHHHHHhhc--------CCCCEEEEEeCCCCCcccccHHH--HHHHHhcCceEEEee
Q 027593 90 IIMFDVTAR------LTYKNVPTWHRDLCRVC--------ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEIS 153 (221)
Q Consensus 90 i~v~d~~~~------~s~~~~~~~~~~~~~~~--------~~~p~i~v~nk~D~~~~~~~~~~--~~~~~~~~~~~~~~s 153 (221)
++|+|+++. .++.....|...+.... ...|+++|+||+|+......... ..........++.+|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999988 46776666766665432 37899999999999653322222 233344467899999
Q ss_pred cCCCCChHHHHHHHHHH
Q 027593 154 AKSNYNFEKPFLYLARK 170 (221)
Q Consensus 154 ~~~~~~i~~~~~~l~~~ 170 (221)
++++.|++++++.+.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999988764
No 160
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.86 E-value=4.6e-21 Score=152.58 Aligned_cols=153 Identities=15% Similarity=0.094 Sum_probs=105.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-eEEEEEEEeCCCccc--ccccc------ccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEK--FGGLR------DGY 82 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~--~~~~~------~~~ 82 (221)
..++|+++|.+|+|||||+|+|++.... .....+.|.......+.. ++..+.+|||+|... ..... ...
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~--v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVY--AADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcee--eccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 3489999999999999999997765432 223334444444433322 346899999999722 11111 123
Q ss_pred ccCccEEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 161 (221)
+.++|++++|+|++++.++.....|...+.... .+.|+++|+||+|+..... .........+++.+||++|.|++
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----v~~~~~~~~~~i~iSAktg~GI~ 341 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----IERLEEGYPEAVFVSAKTGEGLD 341 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh----HHHHHhCCCCEEEEEccCCCCHH
Confidence 678999999999999888777666655554432 3789999999999864211 11111122468999999999999
Q ss_pred HHHHHHHHH
Q 027593 162 KPFLYLARK 170 (221)
Q Consensus 162 ~~~~~l~~~ 170 (221)
+++..|...
T Consensus 342 eL~~~I~~~ 350 (351)
T TIGR03156 342 LLLEAIAER 350 (351)
T ss_pred HHHHHHHhh
Confidence 999988764
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=6e-21 Score=135.99 Aligned_cols=147 Identities=20% Similarity=0.143 Sum_probs=101.3
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc--------cccccccCccE
Q 027593 17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQC 88 (221)
Q Consensus 17 ~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~~ 88 (221)
+++|.+|+|||||+++++.... .......+++...........+..+.+|||||...+.. .....+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD-AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE-EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 5899999999999999765432 22233445555444444444457899999999876443 22345778999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHHHHHHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l 167 (221)
+++|+|+.+..+.... .+...+.. .+.|+++|+||+|+...... .......+. .++++|++++.|+++++.+|
T Consensus 80 ii~v~d~~~~~~~~~~-~~~~~~~~--~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADE-EIAKYLRK--SKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHH-HHHHHHHh--cCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence 9999999876554432 12222222 26999999999999764322 222233455 78999999999999999999
Q ss_pred HHH
Q 027593 168 ARK 170 (221)
Q Consensus 168 ~~~ 170 (221)
.+.
T Consensus 154 ~~~ 156 (157)
T cd01894 154 LEL 156 (157)
T ss_pred Hhh
Confidence 875
No 162
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=2.1e-20 Score=155.02 Aligned_cols=158 Identities=19% Similarity=0.250 Sum_probs=110.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc----------cccc-c
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLR-D 80 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~-~ 80 (221)
..++|+++|.+|+|||||+|+|+.... ....+..|++.......+...+..+.+|||||..+. .... .
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~-~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEER-SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 469999999999999999999876553 233456666665554444334456789999996322 1111 2
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH---HH--HHHHhcCceEEEeecC
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QV--TFHRKKNLQYYEISAK 155 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~---~~--~~~~~~~~~~~~~s~~ 155 (221)
.+++.+|++++|+|+++..++.++.. ...+.. .+.|+++|+||+|+........ .. .+.....++++++||+
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~~-~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk 365 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQRV-LSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK 365 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHH-HHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence 34679999999999999888776643 333322 3789999999999964321111 11 1122234689999999
Q ss_pred CCCChHHHHHHHHHHHhC
Q 027593 156 SNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 156 ~~~~i~~~~~~l~~~l~~ 173 (221)
+|.|++++|..+.+.+..
T Consensus 366 ~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 366 TGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999997654
No 163
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=1.5e-20 Score=139.63 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC--cccCCceeEeeeEEEEec-----------------------------C---
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTN-----------------------------C--- 59 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----------------------------~--- 59 (221)
++|+++|+.|+|||||+..+. +.... ......+.+.......+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~-~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS-GVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET 79 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh-CCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcc
Confidence 479999999999999999854 33111 111111222211111111 0
Q ss_pred -eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH-
Q 027593 60 -GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK- 137 (221)
Q Consensus 60 -~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~- 137 (221)
...++.+|||||++.+...+...+..+|++++|+|++++.........+..+ ......|+++++||+|+........
T Consensus 80 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 80 KLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIMGLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred ccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHcCCCcEEEEEEchhccCHHHHHHH
Confidence 1268999999999887776666778889999999998742111111122222 1122457999999999965321111
Q ss_pred --H-HHHHHh---cCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 138 --Q-VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 138 --~-~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
. .+.... .+.+++++|+++|.|+++++..|...+..
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 1 122222 25689999999999999999999886644
No 164
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=8.8e-21 Score=139.28 Aligned_cols=154 Identities=18% Similarity=0.125 Sum_probs=107.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccC--------------CceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (221)
+|+|+|.+|+|||||+++++.......... ..+.+.......+......+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 589999999999999999776655432211 122333333333344467899999999888877778
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH---H-HHHHHH-------------
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---K-QVTFHR------------- 143 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~---~-~~~~~~------------- 143 (221)
.++..+|++++|+|+.+....... .++..... .+.|+++++||+|+....... . ..+...
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTR 157 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcc
Confidence 888999999999999876544322 23333322 489999999999997522111 1 111221
Q ss_pred -hcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593 144 -KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 144 -~~~~~~~~~s~~~~~~i~~~~~~l~~~l 171 (221)
....+++++|++.|.|+++++.+|.+.+
T Consensus 158 ~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 158 NGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 2357899999999999999999999876
No 165
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.85 E-value=1.1e-20 Score=139.29 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC----CCCCc-ccCCceeEeeeE--EEEec------------CeEEEEEEEeCCCccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTG----EFEKK-YEPTIGVEVHPL--DFFTN------------CGKIRFYCWDTAGQEK 74 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~----~~~~~-~~~~~~~~~~~~--~~~~~------------~~~~~~~~~D~~g~~~ 74 (221)
++|+++|++|+|||||+++|+.. .+... .....|.+.... ...+. +.+..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999998752 11111 011112222221 12222 3367899999999865
Q ss_pred ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH---HHH-HH-H------H
Q 027593 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQV-TF-H------R 143 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~---~~~-~~-~------~ 143 (221)
+..........+|++++|+|+++.........+.. ... .+.|+++++||+|+....... +.. +. . .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 43333333567799999999987544333222221 111 267999999999986432111 111 11 1 1
Q ss_pred hcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 144 KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 144 ~~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
..+++++++|+++|.|+++++..|...+.
T Consensus 158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 158 FKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 24678999999999999999999998765
No 166
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=9.6e-20 Score=157.37 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=118.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc----------c
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------D 80 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----------~ 80 (221)
|+.++|+++|++|||||||+|++.+... ...+.+|+|.......+...+..+.+|||||...+.... .
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence 4568999999999999999999765433 456678999998888888888899999999987654321 1
Q ss_pred ccc--cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHHHHHHhcCceEEEeecCCC
Q 027593 81 GYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 81 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (221)
.++ ..+|++++|+|+++.+... .+...+.+. +.|+++++||+|+.+ +....+..++....+++++++|+.++
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERNL---YLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HHHhccCCCEEEEEecCCcchhhH---HHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecC
Confidence 222 3789999999999865422 233333332 799999999999864 34444455667778999999999999
Q ss_pred CChHHHHHHHHHHH
Q 027593 158 YNFEKPFLYLARKL 171 (221)
Q Consensus 158 ~~i~~~~~~l~~~l 171 (221)
.|++++++.+....
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999888764
No 167
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=5.5e-20 Score=133.04 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=100.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc-----------ccc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RDG 81 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~~ 81 (221)
.++|+++|.+|+|||||+++++..... ......+++.......+...+..+.+|||||....... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERV-IVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccce-eccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 589999999999999999997765432 11223333333333333223456889999996543111 122
Q ss_pred cccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc--ccHHHH-HHHHhc----CceEEEeec
Q 027593 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQV-TFHRKK----NLQYYEISA 154 (221)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~--~~~~~~-~~~~~~----~~~~~~~s~ 154 (221)
.+..+|++++|+|++++.+......+ ..... .+.|+++++||+|+.... ...... ...... ..+++++|+
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~-~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIA-GLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHH-HHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 35688999999999988776544322 22221 378999999999986542 111111 222222 368999999
Q ss_pred CCCCChHHHHHHHHHH
Q 027593 155 KSNYNFEKPFLYLARK 170 (221)
Q Consensus 155 ~~~~~i~~~~~~l~~~ 170 (221)
+++.|+.+++..+.+.
T Consensus 158 ~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999999988764
No 168
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=4.8e-20 Score=151.86 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=110.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc-----------
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------- 79 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----------- 79 (221)
...++|+++|.+|+|||||+|+++.... ....+..|++.......+...+..+.+|||||........
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4568999999999999999999775442 2234456667666555554445689999999976544322
Q ss_pred cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHH-HHHH----hcCceEEEee
Q 027593 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHR----KKNLQYYEIS 153 (221)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~-~~~~----~~~~~~~~~s 153 (221)
..++..+|++++|+|++++.+......+ ..... .+.|+++|+||+|+.. .....+.. .... ...++++++|
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~-~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIA-GLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHH-HHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 2357889999999999988776554332 22222 3789999999999972 21111111 1111 1247899999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q 027593 154 AKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 154 ~~~~~~i~~~~~~l~~~l~ 172 (221)
|++|.|++++|.++.+.+.
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988664
No 169
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.85 E-value=5.1e-21 Score=128.66 Aligned_cols=155 Identities=22% Similarity=0.375 Sum_probs=123.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
.+..+.++|..+||||||+|....|.+..+..++.|......+ .+++.+.+||.+|+..++..|..|.+.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~t----kgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEec----cCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 3578999999999999999987777887877888886655544 478999999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHHHHHH-----hcCceEEEeecCCCCChHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~ 164 (221)
|+|+.+++.....+.-+..+.... .++|+++++||.|+++.....+...... ...+.+|-+|++...+++...
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence 999999877766555444443332 5899999999999987544333332222 223568999999999999999
Q ss_pred HHHHHH
Q 027593 165 LYLARK 170 (221)
Q Consensus 165 ~~l~~~ 170 (221)
+||...
T Consensus 175 ~Wli~h 180 (186)
T KOG0075|consen 175 DWLIEH 180 (186)
T ss_pred HHHHHH
Confidence 998874
No 170
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=4.5e-20 Score=151.16 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=113.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc----c---ccccccC
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----L---RDGYYIH 85 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~---~~~~~~~ 85 (221)
-..|+|+|.++||||||+|+|+..+ +.....+++|..+....+...+..+.+||+||...... + ....+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 4689999999999999999976543 33455677787777776766668999999999643211 1 1223567
Q ss_pred ccEEEEEEeCCCh----hhhccHHHHHHHHHhhc------------CCCCEEEEEeCCCCCcccccHHH-HHHHHhcCce
Q 027593 86 GQCAIIMFDVTAR----LTYKNVPTWHRDLCRVC------------ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQ 148 (221)
Q Consensus 86 ~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~------------~~~p~i~v~nk~D~~~~~~~~~~-~~~~~~~~~~ 148 (221)
++++++|+|+++. ..+.++..+...+..+. ..+|.++|+||+|+.+.....+. .......+++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~ 316 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWP 316 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCe
Confidence 8999999999863 34444555554443332 36899999999999653222222 2233345789
Q ss_pred EEEeecCCCCChHHHHHHHHHHHhCC
Q 027593 149 YYEISAKSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 149 ~~~~s~~~~~~i~~~~~~l~~~l~~~ 174 (221)
++++|++++.|+++++.+|...+...
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999987554
No 171
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.84 E-value=9.8e-20 Score=130.77 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=102.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc--------ccccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY 83 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 83 (221)
...+|+++|++|+|||||++++++... .........+..............+.+|||||....... ....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCce-EeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 468999999999999999999665432 222223333333333344445678999999997643322 23347
Q ss_pred cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHH-HHHHhc-CceEEEeecCCCCCh
Q 027593 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNYNF 160 (221)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~-~~~~~~-~~~~~~~s~~~~~~i 160 (221)
..++++++|+|+++..... ...+...+... +.|+++++||+|+.. .....+.. ...... ..+++.+|++++.++
T Consensus 81 ~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEG-DEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred HhCCEEEEEEECCCccCch-HHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 7889999999999872211 12222333322 689999999999973 22222222 233333 368899999999999
Q ss_pred HHHHHHHHHH
Q 027593 161 EKPFLYLARK 170 (221)
Q Consensus 161 ~~~~~~l~~~ 170 (221)
++++..|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 172
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.84 E-value=1.9e-20 Score=133.63 Aligned_cols=139 Identities=16% Similarity=0.071 Sum_probs=94.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc----cccccCccEEE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI 90 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~~i 90 (221)
+|+++|++|+|||||+|++. +.+.. ...+. ...+... .+|||||.......+ ...+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~-~~~~~-~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ-GNYTL-ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc-CCCcc-Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999944 44321 11111 1222222 269999973222111 22367899999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcC--ceEEEeecCCCCChHHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
+|+|+++..++.. .|+..+ ..+.|+++++||+|+.+.. .....++....+ .+++++|+++|.|++++|..+.
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred EEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 9999998877643 343332 2367999999999986532 222334455555 4899999999999999999998
Q ss_pred HHHh
Q 027593 169 RKLA 172 (221)
Q Consensus 169 ~~l~ 172 (221)
+.+.
T Consensus 144 ~~~~ 147 (158)
T PRK15467 144 SLTK 147 (158)
T ss_pred Hhch
Confidence 8664
No 173
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.84 E-value=2.9e-20 Score=135.60 Aligned_cols=153 Identities=15% Similarity=0.123 Sum_probs=100.9
Q ss_pred CCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc--------
Q 027593 3 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-------- 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------- 74 (221)
++..+......++|+++|++|+|||||+|+++...+...+.++.+.+........+ ..+.+|||||...
T Consensus 8 ~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~ 84 (179)
T TIGR03598 8 VKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEK 84 (179)
T ss_pred ccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHH
Confidence 33445566778999999999999999999987765555666677777665544433 2689999999532
Q ss_pred --cccccccccc---CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH----HHHHHHHhc
Q 027593 75 --FGGLRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRKK 145 (221)
Q Consensus 75 --~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~----~~~~~~~~~ 145 (221)
+......+++ .++++++|+|++.+.+..+.. +...+.. .++|+++++||+|+....... +........
T Consensus 85 ~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~ 161 (179)
T TIGR03598 85 EKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD 161 (179)
T ss_pred HHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence 2222233443 357999999998764444432 2222222 278999999999986432111 111223332
Q ss_pred --CceEEEeecCCCCChH
Q 027593 146 --NLQYYEISAKSNYNFE 161 (221)
Q Consensus 146 --~~~~~~~s~~~~~~i~ 161 (221)
...++++||++|.|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 2479999999999874
No 174
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.84 E-value=1.1e-19 Score=134.42 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=105.5
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc----------cccc
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGL 78 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~ 78 (221)
.....++|+++|++|+|||||+++++.+.+...+.++.|.+........ +..+.+|||||... +...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 4456789999999999999999998876666667777777665544332 36799999999532 2222
Q ss_pred ccccccC---ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH---HHH-HHHHhcCceEEE
Q 027593 79 RDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQV-TFHRKKNLQYYE 151 (221)
Q Consensus 79 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~---~~~-~~~~~~~~~~~~ 151 (221)
...++.. .+++++++|+..+...... .+...+.. .+.|+++++||+|+....... +.. .........+++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 173 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL 173 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 2333433 3678888887765433221 11122221 278999999999986532211 111 222223678999
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q 027593 152 ISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~ 172 (221)
+|++++.|+++++..|...+.
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhc
Confidence 999999999999999987654
No 175
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1e-19 Score=144.91 Aligned_cols=175 Identities=17% Similarity=0.155 Sum_probs=128.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc--------ccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD--------GYY 83 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--------~~~ 83 (221)
..++|+++|.||+|||||+|. +.+.-...++.-+|+|++.....++-+++.+.++||+|..+...... ..+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNa-L~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNA-LLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred cCceEEEECCCCCcHHHHHHH-HhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 368999999999999999998 66777788899999999999999998999999999999776544433 237
Q ss_pred cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHH
Q 027593 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 163 (221)
..+|.+++|+|++....-.+... .. ....++|+++|.||.|+......... ....+.+.+.+|++++.|++.+
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~-~~---~~~~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLAL-IE---LLPKKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHH-HH---hcccCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHHHH
Confidence 79999999999998632222111 11 23347999999999999865432222 2233457899999999999999
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCcccccchHH
Q 027593 164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 196 (221)
Q Consensus 164 ~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~ 196 (221)
...|.+.+... ....+.+.....++..-.++
T Consensus 368 ~~~i~~~~~~~--~~~~~~~~i~~~Rh~~~L~~ 398 (454)
T COG0486 368 REAIKQLFGKG--LGNQEGLFLSNLRHIQLLEQ 398 (454)
T ss_pred HHHHHHHHhhc--ccccccceeecHHHHHHHHH
Confidence 99999977654 22233444444444333333
No 176
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=1.5e-20 Score=138.11 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=107.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCC----------------cccCCceeEeeeEEEEec--CeEEEEEEEeCCCcc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK----------------KYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQE 73 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~ 73 (221)
+.++|+++|+.++|||||+.+|+...... ......+.+.......+. .....+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 56899999999999999999987533211 011123344444444444 677899999999999
Q ss_pred cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHH---H-HHHHhc----
Q 027593 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ---V-TFHRKK---- 145 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~---~-~~~~~~---- 145 (221)
.|.......+..+|++++|+|+.+....... ..+..... .+.|+++|+||+|+......... . .+....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~--~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILRE--LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHH--TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ceeecccceecccccceeeeecccccccccc-cccccccc--cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 8877777778999999999999976433222 22222222 27889999999999742222111 1 121111
Q ss_pred --CceEEEeecCCCCChHHHHHHHHHHH
Q 027593 146 --NLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 146 --~~~~~~~s~~~~~~i~~~~~~l~~~l 171 (221)
..+++++|+++|.|+..+++.|.+.+
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 36899999999999999999998865
No 177
>PRK11058 GTPase HflX; Provisional
Probab=99.83 E-value=6.2e-20 Score=149.32 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-eEEEEEEEeCCCcccc--ccccc------cccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKF--GGLRD------GYYI 84 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~--~~~~~------~~~~ 84 (221)
++|+++|.+|||||||+|+++..... .....++|.......+.. +...+.+|||+|.... ...+. ..+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~--v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY--AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee--eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 68999999999999999997765432 223334444444333322 2237789999997331 22222 2257
Q ss_pred CccEEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccHHHHHHHHhcCce-EEEeecCCCCChHH
Q 027593 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEK 162 (221)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~ 162 (221)
.+|++++|+|++++.++..+..|...+.... .+.|+++|+||+|+...... .... ...+.+ ++.+||++|.|+++
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~~~-~~~~~~~~v~ISAktG~GIde 352 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RIDR-DEENKPIRVWLSAQTGAGIPL 352 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HHHH-HhcCCCceEEEeCCCCCCHHH
Confidence 8999999999999988777765555554432 37899999999998643111 1111 123444 48899999999999
Q ss_pred HHHHHHHHHhCC
Q 027593 163 PFLYLARKLAGD 174 (221)
Q Consensus 163 ~~~~l~~~l~~~ 174 (221)
++++|...+...
T Consensus 353 L~e~I~~~l~~~ 364 (426)
T PRK11058 353 LFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHhhhc
Confidence 999999987543
No 178
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.83 E-value=3.1e-19 Score=150.21 Aligned_cols=155 Identities=13% Similarity=0.114 Sum_probs=105.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+..+|+++|+.++|||||+++|..+.+.....+....+.....+...+ ...+.+|||||+..|...+...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-~~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED-GKMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC-CcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 34568999999999999999999887666543332222222223333322 22889999999999988888888999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHH-------hc--CceEEEeecCCCCCh
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-------KK--NLQYYEISAKSNYNF 160 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~-------~~--~~~~~~~s~~~~~~i 160 (221)
++|+|+++.........+. ... ..+.|+++++||+|+..... .+...... .. ..+++++||++|.|+
T Consensus 163 ILVVda~dgv~~qT~e~i~-~~~--~~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEAIS-HAK--AANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEEEECCCCCCHhHHHHHH-HHH--HcCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 9999998753222222221 111 13789999999999864321 11111111 11 257999999999999
Q ss_pred HHHHHHHHH
Q 027593 161 EKPFLYLAR 169 (221)
Q Consensus 161 ~~~~~~l~~ 169 (221)
++++.+|..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999998864
No 179
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=9.8e-20 Score=150.22 Aligned_cols=148 Identities=22% Similarity=0.159 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc--------cccccccccC
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGYYIH 85 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~ 85 (221)
++|+++|.+|||||||+|+|+.... .......|++.......+...+..+.+|||||.... ......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~-~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD-AIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 5899999999999999999765543 233445666655554444434588999999998761 2223445788
Q ss_pred ccEEEEEEeCCChhhhcc--HHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHH
Q 027593 86 GQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK 162 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~ 162 (221)
+|++++|+|+++..+... +..|+. .. +.|+++|+||+|..... .........++ .++++||.+|.|+.+
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~---~~--~~piilv~NK~D~~~~~---~~~~~~~~lg~~~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILR---KS--NKPVILVVNKVDGPDEE---ADAYEFYSLGLGEPYPISAEHGRGIGD 152 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH---Hc--CCcEEEEEECccCccch---hhHHHHHhcCCCCCEEEEeeCCCCHHH
Confidence 999999999987644322 223333 22 78999999999975421 12222234455 489999999999999
Q ss_pred HHHHHHHH
Q 027593 163 PFLYLARK 170 (221)
Q Consensus 163 ~~~~l~~~ 170 (221)
++..+...
T Consensus 153 l~~~I~~~ 160 (435)
T PRK00093 153 LLDAILEE 160 (435)
T ss_pred HHHHHHhh
Confidence 99999873
No 180
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2e-19 Score=120.12 Aligned_cols=158 Identities=21% Similarity=0.320 Sum_probs=123.8
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
..-++++|+.+|..++||||++..+..+.. ....+|.|......++ .++.+.+||.+|+.+.+..|++|+....+
T Consensus 13 f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqg 87 (180)
T KOG0071|consen 13 FGNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQG 87 (180)
T ss_pred hCcccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCce
Confidence 345689999999999999999999765543 4455677766655544 78999999999999999999999999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~ 161 (221)
+|||+|+.++...++.+..+..+... ....|+++.+||.|+.+.....+.. +..+....-..++++.+|.|+.
T Consensus 88 lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 88 LIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 99999999987777666555554443 2478999999999998755444322 2234445678899999999999
Q ss_pred HHHHHHHHHH
Q 027593 162 KPFLYLARKL 171 (221)
Q Consensus 162 ~~~~~l~~~l 171 (221)
+-|.+|...+
T Consensus 168 eglswlsnn~ 177 (180)
T KOG0071|consen 168 EGLSWLSNNL 177 (180)
T ss_pred HHHHHHHhhc
Confidence 9999988754
No 181
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=1.4e-19 Score=149.09 Aligned_cols=152 Identities=20% Similarity=0.174 Sum_probs=109.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc--------ccccccccccCc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIHG 86 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 86 (221)
+|+++|.+|||||||+|+|+... ...+....|++.......+...+..+.+|||||... +......++..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 58999999999999999976554 344556777777766665555567899999999632 233345567899
Q ss_pred cEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHHHHH
Q 027593 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~ 165 (221)
|++++|+|+.+....... .+...+.. .++|+++|+||+|+....... ......++ .++++||..|.|+.+++.
T Consensus 80 d~vl~vvD~~~~~~~~d~-~i~~~l~~--~~~piilVvNK~D~~~~~~~~---~~~~~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDE-EIAKWLRK--SGKPVILVANKIDGKKEDAVA---AEFYSLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred CEEEEEEeCCCCCCHHHH-HHHHHHHH--hCCCEEEEEECccCCcccccH---HHHHhcCCCCeEEEeCCcCCChHHHHH
Confidence 999999999875443321 22223333 278999999999986533221 22334555 799999999999999999
Q ss_pred HHHHHHhC
Q 027593 166 YLARKLAG 173 (221)
Q Consensus 166 ~l~~~l~~ 173 (221)
.+.+.+..
T Consensus 154 ~i~~~l~~ 161 (429)
T TIGR03594 154 AILELLPE 161 (429)
T ss_pred HHHHhcCc
Confidence 99987744
No 182
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=2.5e-19 Score=151.55 Aligned_cols=157 Identities=14% Similarity=0.167 Sum_probs=114.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCC--CC-----Cc------ccCCceeEeeeEEEEe-----cCeEEEEEEEeCCCccc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGE--FE-----KK------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~--~~-----~~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~ 74 (221)
.-+++++|+.++|||||+.+|+... .. .. .....|.+.......+ ++..+.+.+|||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3489999999999999999987532 11 11 1224466666554444 34578999999999999
Q ss_pred ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEEE
Q 027593 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYE 151 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~~ 151 (221)
+...+..++..+|++++|+|+++.........|..... .+.|+++|+||+|+..........++....++ .+++
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~ 163 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVL 163 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEE
Confidence 98888889999999999999998766555555543322 37899999999998653222111223333344 4899
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q 027593 152 ISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~ 172 (221)
+||++|.|+++++.+|.+.+.
T Consensus 164 iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 164 VSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred EecCCCCCHHHHHHHHHHhCc
Confidence 999999999999999998653
No 183
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.82 E-value=7.1e-19 Score=132.50 Aligned_cols=187 Identities=16% Similarity=0.173 Sum_probs=132.0
Q ss_pred CCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc------
Q 027593 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------ 77 (221)
Q Consensus 4 ~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------ 77 (221)
.+++....+.+.|+|+|.|++|||||.|.++ |......+....+|.......+..+..++.++||||.-....
T Consensus 63 srde~e~~k~L~vavIG~PNvGKStLtN~mi-g~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l 141 (379)
T KOG1423|consen 63 SRDEEEAQKSLYVAVIGAPNVGKSTLTNQMI-GQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHL 141 (379)
T ss_pred CCCchhcceEEEEEEEcCCCcchhhhhhHhh-CCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHH
Confidence 3455567889999999999999999999955 555556677777888888888888889999999999443211
Q ss_pred ------cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc--------------ccHH
Q 027593 78 ------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAK 137 (221)
Q Consensus 78 ------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~--------------~~~~ 137 (221)
.......++|.+++++|+++........ .+..+.. ..+.|-++|.||.|..... ....
T Consensus 142 ~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~-vl~~l~~-ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~ 219 (379)
T KOG1423|consen 142 MMSVLQNPRDAAQNADCVVVVVDASATRTPLHPR-VLHMLEE-YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL 219 (379)
T ss_pred HHHhhhCHHHHHhhCCEEEEEEeccCCcCccChH-HHHHHHH-HhcCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence 1223366899999999999744333222 2222222 2478999999999964321 1100
Q ss_pred HHHHH-----------------HhcCceEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccc
Q 027593 138 QVTFH-----------------RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193 (221)
Q Consensus 138 ~~~~~-----------------~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~ 193 (221)
..+.. +.+.-.+|.+|+++|+|++++.++|......+|..+..+-++..++++...
T Consensus 220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~ 292 (379)
T KOG1423|consen 220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCS 292 (379)
T ss_pred hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHH
Confidence 01110 011124899999999999999999999999999988888888776665433
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=6.3e-19 Score=145.44 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=110.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc-----------c
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------R 79 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~ 79 (221)
...++|+++|.+|+|||||+|+++... .....+..|++.......+...+..+.+|||||....... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEE-RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCC-ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 357999999999999999999976543 2234456677777766655555677899999996543221 1
Q ss_pred cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-HH----HHhcCceEEEeec
Q 027593 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQYYEISA 154 (221)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~~----~~~~~~~~~~~s~ 154 (221)
..++..+|++++|+|++++.+..+...+ ..+.. .++|+++++||+|+.+.....+.. .. .....++++++||
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~-~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIA-GLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 2356789999999999988666554332 22222 278999999999987432221111 11 1123578999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q 027593 155 KSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 155 ~~~~~i~~~~~~l~~~l~ 172 (221)
++|.|+.+++..+.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887554
No 185
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=1.9e-19 Score=143.04 Aligned_cols=152 Identities=19% Similarity=0.102 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc---------cccccccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYI 84 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~ 84 (221)
..|+++|.||+|||||+|+ +.+.....+..++|+|++.........+..+.++||+|..... ......+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNR-L~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNR-LTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHH-HhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 6899999999999999999 5566678888999999999888777777889999999976422 22334477
Q ss_pred CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHHH
Q 027593 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (221)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~ 163 (221)
.+|+++||+|.....+-.+. .....++ ..++|+++|+||+|... ..+.......+|+ ..+.+||..|.|+.++
T Consensus 83 eADvilfvVD~~~Git~~D~-~ia~~Lr--~~~kpviLvvNK~D~~~---~e~~~~efyslG~g~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 83 EADVILFVVDGREGITPADE-EIAKILR--RSKKPVILVVNKIDNLK---AEELAYEFYSLGFGEPVPISAEHGRGIGDL 156 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHH--hcCCCEEEEEEcccCch---hhhhHHHHHhcCCCCceEeehhhccCHHHH
Confidence 89999999999876544321 1222222 23799999999999862 2223333445555 7899999999999999
Q ss_pred HHHHHHHHh
Q 027593 164 FLYLARKLA 172 (221)
Q Consensus 164 ~~~l~~~l~ 172 (221)
.+++...+.
T Consensus 157 ld~v~~~l~ 165 (444)
T COG1160 157 LDAVLELLP 165 (444)
T ss_pred HHHHHhhcC
Confidence 999999873
No 186
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.81 E-value=4.3e-19 Score=151.56 Aligned_cols=157 Identities=20% Similarity=0.245 Sum_probs=107.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE--EEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
.+..+|+|+|+.++|||||+++|..+.+.....+....+.... .....+.+..+.+|||||+..|...+..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4568999999999999999999876655432222221111122 22223456899999999999998888888999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH--HHHH----HHHhc--CceEEEeecCCCCCh
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVT----FHRKK--NLQYYEISAKSNYNF 160 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~--~~~~----~~~~~--~~~~~~~s~~~~~~i 160 (221)
+++|+|+++.........|.. +. ..+.|+++++||+|+....... ..+. ..... .++++++||++|.|+
T Consensus 322 aILVVDA~dGv~~QT~E~I~~-~k--~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GI 398 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAINY-IQ--AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNI 398 (742)
T ss_pred EEEEEECcCCCChhhHHHHHH-HH--hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCH
Confidence 999999987543333222221 11 1378999999999987532211 1111 01112 368999999999999
Q ss_pred HHHHHHHHHH
Q 027593 161 EKPFLYLARK 170 (221)
Q Consensus 161 ~~~~~~l~~~ 170 (221)
++++..|...
T Consensus 399 deLle~I~~l 408 (742)
T CHL00189 399 DKLLETILLL 408 (742)
T ss_pred HHHHHhhhhh
Confidence 9999988774
No 187
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.81 E-value=1.1e-18 Score=150.31 Aligned_cols=155 Identities=14% Similarity=0.168 Sum_probs=108.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+...|+|+|+.++|||||+++|..+.+.... ..|.+.......+...+..+.+|||||+..|...+...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e--~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGE--AGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccc--cCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 456789999999999999999998766554332 234444443333333357899999999999988888888899999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH--HHHH----HHHhc--CceEEEeecCCCCChH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVT----FHRKK--NLQYYEISAKSNYNFE 161 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~--~~~~----~~~~~--~~~~~~~s~~~~~~i~ 161 (221)
++|+|+++.........|.. .. ..+.|+++++||+|+....... ..+. ..... .++++++||++|.|++
T Consensus 365 ILVVdAddGv~~qT~e~i~~-a~--~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~ 441 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAINH-AK--AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID 441 (787)
T ss_pred EEEEECCCCCCHhHHHHHHH-HH--hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence 99999987533222222221 11 1378999999999996532111 1111 11122 3689999999999999
Q ss_pred HHHHHHHH
Q 027593 162 KPFLYLAR 169 (221)
Q Consensus 162 ~~~~~l~~ 169 (221)
+++.+|..
T Consensus 442 eLle~I~~ 449 (787)
T PRK05306 442 ELLEAILL 449 (787)
T ss_pred HHHHhhhh
Confidence 99998875
No 188
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.81 E-value=5.7e-19 Score=119.97 Aligned_cols=166 Identities=23% Similarity=0.374 Sum_probs=141.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.--.+||+++|.+..|||||+-.|+++.+...+..+.|+....+++.+.+..+.+.+||.+|++++.......-..+-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 34479999999999999999999999999888888999999999999999999999999999999988888888899999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-------cccHHHHHHHHhcCceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 162 (221)
+++||.+.+.....+..|...-+...+..-=|++++|.|.--. .+.......+.-.+.+.|++|+...-++++
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK 176 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence 9999999999999999998887777654444678999996321 122234466777889999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 027593 163 PFLYLARKLAGDP 175 (221)
Q Consensus 163 ~~~~l~~~l~~~~ 175 (221)
+|..+..++..-|
T Consensus 177 IFK~vlAklFnL~ 189 (205)
T KOG1673|consen 177 IFKIVLAKLFNLP 189 (205)
T ss_pred HHHHHHHHHhCCc
Confidence 9999888886643
No 189
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.81 E-value=2.9e-18 Score=116.28 Aligned_cols=162 Identities=21% Similarity=0.344 Sum_probs=130.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCc--ccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc-cccccccccCccE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQC 88 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~~~~~~~~~~ 88 (221)
+..||+++|..++|||+++.+++.|..... ..+|+...|....-+-++-.-.+.++||.|...+ ..+-.+|+.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 468999999999999999999887776443 3455554444333333455567999999998776 6677889999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~ 164 (221)
+++||+..+++||..+..+..++.+.. ...|+++++||+|+.+ +.+..+ ...|+....+..+++++.+...+-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 999999999999998887777776654 3689999999999964 444444 457888899999999999999999999
Q ss_pred HHHHHHHhC
Q 027593 165 LYLARKLAG 173 (221)
Q Consensus 165 ~~l~~~l~~ 173 (221)
..++..+.+
T Consensus 168 ~~l~~rl~~ 176 (198)
T KOG3883|consen 168 TYLASRLHQ 176 (198)
T ss_pred HHHHHhccC
Confidence 999998765
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=9.1e-19 Score=151.65 Aligned_cols=155 Identities=25% Similarity=0.223 Sum_probs=109.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc--------cccccccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGYY 83 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~ 83 (221)
...+|+++|.+|||||||+|+|+... ......++|++...........+..+.+|||||.... ......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~-~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRR-EAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCC-ceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 35789999999999999999976543 3445667888888777665555678999999997632 22234457
Q ss_pred cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHH
Q 027593 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK 162 (221)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~ 162 (221)
..+|++++|+|+++...... ..|...+.. .+.|+++|+||+|+..... ....+ ...+. ..+++||++|.|+.+
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~--~~~~~-~~lg~~~~~~iSA~~g~GI~e 426 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQASEY--DAAEF-WKLGLGEPYPISAMHGRGVGD 426 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccccchh--hHHHH-HHcCCCCeEEEECCCCCCchH
Confidence 89999999999986432211 134444433 4899999999999864321 11121 12222 357899999999999
Q ss_pred HHHHHHHHHhC
Q 027593 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
++.+|+..+..
T Consensus 427 Ll~~i~~~l~~ 437 (712)
T PRK09518 427 LLDEALDSLKV 437 (712)
T ss_pred HHHHHHHhccc
Confidence 99999998754
No 191
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=9.6e-19 Score=143.65 Aligned_cols=156 Identities=19% Similarity=0.158 Sum_probs=106.9
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCC--CC---------------------------cccCCceeEeeeEEEEecC
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK---------------------------KYEPTIGVEVHPLDFFTNC 59 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~ 59 (221)
.+++.++|+++|++++|||||+++|+...- .. ......|+|.+.....+..
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 367889999999999999999999873211 00 1122567888888777877
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc-c---
Q 027593 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K--- 135 (221)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~--- 135 (221)
.+..+.+|||||++.+.......+..+|++++|+|+++..++.....+...+.......|+++++||+|+..... .
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHH
Confidence 889999999999987766555557889999999999874233222222222222233356899999999964211 1
Q ss_pred --HHHHHHHHhcC-----ceEEEeecCCCCChHHHH
Q 027593 136 --AKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 136 --~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~ 164 (221)
.+...+....+ .+++++|+++|.|+.+.+
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11122333333 579999999999998744
No 192
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.80 E-value=8e-19 Score=148.39 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=106.3
Q ss_pred cCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc------ccccc--cCccEEEE
Q 027593 20 GDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAII 91 (221)
Q Consensus 20 G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~i~ 91 (221)
|.+|||||||+|++.+... ...+.+|+|.......+..++..+.+|||||+..+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~--~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ--TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC--eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999776553 34556777777766555545567899999998876543 23333 36899999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
|+|+++.+.. ..+...+.+ .+.|+++++||+|+.++ ....+...+.+..+++++++|+++|.|++++++.+.+.
T Consensus 79 VvDat~ler~---l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchhh---HHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 9999875321 222222222 37999999999998543 33344456677788999999999999999999999886
Q ss_pred H
Q 027593 171 L 171 (221)
Q Consensus 171 l 171 (221)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 4
No 193
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=9.4e-20 Score=126.05 Aligned_cols=164 Identities=23% Similarity=0.346 Sum_probs=122.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc----cCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 85 (221)
.+..|.|+|+|+.++|||||+.+ +...+...+ ...+..+......++.-++..+.+||..|++..+++|..|+..
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~-~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEA-LKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhhhhheeeccccCCchhHHHH-HHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHH
Confidence 45578999999999999999987 332222111 1122233333444444457889999999999999999999999
Q ss_pred ccEEEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH------HHHHhcCceEEEeecCCC
Q 027593 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~------~~~~~~~~~~~~~s~~~~ 157 (221)
++++++++|+++++.|+.....+..+... ..+.|+++.+||.|+.+.....+.. +.......++.++|+.+|
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG 172 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence 99999999999999998776555544332 3689999999999998754443322 222234578999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 027593 158 YNFEKPFLYLARKLAGD 174 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~~ 174 (221)
+|+++...|+++.+.++
T Consensus 173 egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 173 EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 99999999999999876
No 194
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.80 E-value=1.8e-18 Score=146.12 Aligned_cols=152 Identities=18% Similarity=0.098 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC---CCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
+.|+++|+.++|||||+++|++.. +.... ..|++.......+...+..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~--~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEK--KRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHh--cCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 479999999999999999976422 22222 2344444333333333488999999999988877777788999999
Q ss_pred EEEeCCCh---hhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCccccc----HHHHHHHHhc----CceEEEeecCCCC
Q 027593 91 IMFDVTAR---LTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKK----NLQYYEISAKSNY 158 (221)
Q Consensus 91 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~----~~~~~~~~~~----~~~~~~~s~~~~~ 158 (221)
+|+|+++. .+++.+ ..+.. .+.| +++|+||+|+.+.... .+...+.... +.+++++|+++|.
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 99999984 232222 11211 2567 9999999999753311 1112233322 5789999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 027593 159 NFEKPFLYLARKLAG 173 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~ 173 (221)
|+++++..|...+..
T Consensus 153 GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 153 GIGELKKELKNLLES 167 (581)
T ss_pred CchhHHHHHHHHHHh
Confidence 999999998876543
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=9.6e-19 Score=151.51 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=107.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc----------cc-cc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG----------GL-RD 80 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~-~~ 80 (221)
..++|+++|.+|||||||+|++++... .......|++.......+...+..+.+|||||..... .. ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 458999999999999999999776543 2223455556555544333344567799999964211 11 12
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-HHHHh----cCceEEEeecC
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRK----KNLQYYEISAK 155 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~----~~~~~~~~s~~ 155 (221)
..+..+|++++|+|+++..++.....+. .+.. .++|+++|+||+|+.+........ ..... ...+.+++||+
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i~~-~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKVMS-MAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHHHH-HHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence 2367899999999999987777665432 2222 379999999999996532211111 11111 23467899999
Q ss_pred CCCChHHHHHHHHHHHhC
Q 027593 156 SNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 156 ~~~~i~~~~~~l~~~l~~ 173 (221)
+|.|+++++..+.+.+..
T Consensus 605 tg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 605 TGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999997764
No 196
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.79 E-value=2.2e-18 Score=122.60 Aligned_cols=149 Identities=18% Similarity=0.229 Sum_probs=101.9
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCccccccccc-------ccccCccEE
Q 027593 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRD-------GYYIHGQCA 89 (221)
Q Consensus 18 v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~-------~~~~~~~~~ 89 (221)
++|+.|+|||||+++++.... .......+.+........... ...+.+||+||......... .++..++++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEV-AIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccc-cccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 589999999999999664332 323333444444433333222 57899999999876554333 367899999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHH-----HHHHHhcCceEEEeecCCCCChHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~i~~~~ 164 (221)
++|+|+.+........ +...... .+.|+++|+||+|+......... .........+++++|+.++.|+.+++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 9999999886665543 2222222 48999999999998754322222 12233346789999999999999999
Q ss_pred HHHHHH
Q 027593 165 LYLARK 170 (221)
Q Consensus 165 ~~l~~~ 170 (221)
.++.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 988764
No 197
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.79 E-value=3e-18 Score=140.74 Aligned_cols=155 Identities=19% Similarity=0.159 Sum_probs=107.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------------------cccCCceeEeeeEEEEecCe
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (221)
+.+.++|+++|+.++|||||+++|+. |.... ......|++.+.....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 67789999999999999999999875 32211 01124467777777777777
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-ccc---
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-QVK--- 135 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~--- 135 (221)
+..+.+|||||++.|.......+..+|++++|+|+++..++.... .+...+.......|+++++||+|+.+. ...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 889999999999887665555678899999999999885432211 111122223334678999999999641 111
Q ss_pred --HHHHHHHHhcC-----ceEEEeecCCCCChHHHH
Q 027593 136 --AKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 136 --~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~ 164 (221)
.+...+....+ ++++++||++|.|+.+++
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 12223343333 679999999999998644
No 198
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=4.7e-18 Score=143.35 Aligned_cols=157 Identities=16% Similarity=0.198 Sum_probs=115.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc--CCCCCc------------ccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 78 (221)
.-+|+++|+.++|||||+++|+. +.+... ...+.|.++......+.+.+..+.+|||||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999886 433222 1346788888888888888899999999999999988
Q ss_pred ccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH---HHHHHH-------HhcCce
Q 027593 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFH-------RKKNLQ 148 (221)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~---~~~~~~-------~~~~~~ 148 (221)
+..+++.+|++++|+|+.+.........|. .... .+.|.++++||+|........ +..... ....++
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~-~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~P 161 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQTRFVTK-KAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFP 161 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHHHHHHH-HHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCC
Confidence 899999999999999998764332222222 2222 378999999999986533221 111221 123477
Q ss_pred EEEeecCCCC----------ChHHHHHHHHHHHh
Q 027593 149 YYEISAKSNY----------NFEKPFLYLARKLA 172 (221)
Q Consensus 149 ~~~~s~~~~~----------~i~~~~~~l~~~l~ 172 (221)
++++|+.+|. ++..+++.|...+.
T Consensus 162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred EEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 9999999997 57788877777553
No 199
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.78 E-value=1.7e-18 Score=115.91 Aligned_cols=157 Identities=20% Similarity=0.326 Sum_probs=120.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+++||+++|-.++||||++++ +.+.-+....++.|........ .++.++.+||++|+...+..|..|+.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccceE
Confidence 46799999999999999999998 6677667777888866655444 2569999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHH-HH----HHHHhcCceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QV----TFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~-~~----~~~~~~~~~~~~~s~~~~~~i~~ 162 (221)
|+|+|.+|...|+++..-+..+... ....|+.+..||.|+.-.....+ .. ...+........+|+.++.|+..
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence 9999999999998776544444332 35789999999999754322221 11 12223345678899999999988
Q ss_pred HHHHHHHH
Q 027593 163 PFLYLARK 170 (221)
Q Consensus 163 ~~~~l~~~ 170 (221)
-.+++...
T Consensus 170 g~~wv~sn 177 (185)
T KOG0074|consen 170 GSDWVQSN 177 (185)
T ss_pred cchhhhcC
Confidence 77776653
No 200
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4.9e-18 Score=140.87 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=124.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc------ccccccc-
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------GLRDGYY- 83 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~- 83 (221)
|+..+|+++|.||+|||||+|++.+.+ .....-+|+|...++......+.+++++|.||--... ...+.|+
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 456789999999999999999965443 4567788999999999998888889999999944322 2223333
Q ss_pred -cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593 84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 84 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 161 (221)
...|.++-|.|+++.+..-.+...+.++ +.|++++.|++|..+ ..+..+..++.+.+++|.++++|+.|.|++
T Consensus 79 ~~~~D~ivnVvDAtnLeRnLyltlQLlE~-----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNLYLTLQLLEL-----GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred cCCCCEEEEEcccchHHHHHHHHHHHHHc-----CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 3569999999999986654444333333 899999999999865 456667788889999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 027593 162 KPFLYLARKLAGDP 175 (221)
Q Consensus 162 ~~~~~l~~~l~~~~ 175 (221)
++...+.+....+.
T Consensus 154 ~l~~~i~~~~~~~~ 167 (653)
T COG0370 154 ELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHhccccc
Confidence 99988888655443
No 201
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=8.4e-18 Score=133.77 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=118.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc-----------c
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------D 80 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----------~ 80 (221)
..+||+++|.|++|||||+|+ +.+.......+..|+|++.+...+..++..+.++||+|..+-.... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~-ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINA-ILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHH-hccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 459999999999999999999 5566677788999999999999988888899999999966432222 2
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHHH--HHHHh----cCceEEEee
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQV--TFHRK----KNLQYYEIS 153 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~~--~~~~~----~~~~~~~~s 153 (221)
..+..++.+++|+|++.+.+-.+.... ..+.. .++++++++||.|+.+. ....+.. .+... ...+.+++|
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~ia-~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLRIA-GLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHHHH-HHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 226688999999999988664443322 22222 38999999999998653 2222222 22222 246899999
Q ss_pred cCCCCChHHHHHHHHHHHhC
Q 027593 154 AKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 154 ~~~~~~i~~~~~~l~~~l~~ 173 (221)
|+++.++.++|..+......
T Consensus 333 A~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred ecCCCChHHHHHHHHHHHHH
Confidence 99999999999988876543
No 202
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.78 E-value=5.8e-18 Score=121.81 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc----------ccccccccc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLRDGYYI 84 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~~~~ 84 (221)
.|+++|++|+|||||++.++.+.+.+...++.+.+.........+ .+.+|||||.... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999886677676777777666555444433 8899999994332 222223332
Q ss_pred ---CccEEEEEEeCCChhhhc--cHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH----HHHHHH--HhcCceEEEee
Q 027593 85 ---HGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFH--RKKNLQYYEIS 153 (221)
Q Consensus 85 ---~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~----~~~~~~--~~~~~~~~~~s 153 (221)
+.+.+++++|........ .+..|+... ..|+++++||+|+....... ...... .....+++++|
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 356788898887653222 222333322 68999999999985422211 111112 13456889999
Q ss_pred cCCCCChHHHHHHHHHH
Q 027593 154 AKSNYNFEKPFLYLARK 170 (221)
Q Consensus 154 ~~~~~~i~~~~~~l~~~ 170 (221)
++++.++.+++..|.+.
T Consensus 153 a~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 153 SLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999998774
No 203
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.78 E-value=3.6e-18 Score=126.78 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=85.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc-cEEEEEE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG-QCAIIMF 93 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~ 93 (221)
+|+++|++|||||||+++|..+.+...+..+. ................+.+||+||+..++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 68999999999999999988776655433221 111111111113457899999999999888888888898 9999999
Q ss_pred eCCCh-hhhccHHHHHHHHHhh----cCCCCEEEEEeCCCCCc
Q 027593 94 DVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKN 131 (221)
Q Consensus 94 d~~~~-~s~~~~~~~~~~~~~~----~~~~p~i~v~nk~D~~~ 131 (221)
|+++. .++.....|+..+... .+..|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99988 6676666665544322 25899999999999854
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.77 E-value=4.3e-18 Score=143.68 Aligned_cols=155 Identities=16% Similarity=0.237 Sum_probs=114.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCCCc------------ccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (221)
+|+++|+.++|||||+++|+. |.+... .....|.|.......+.+.+..+.+|||||+..|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999885 333221 123457777777777777889999999999999988888
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc---HHHHHHH-------HhcCceEE
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFH-------RKKNLQYY 150 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~---~~~~~~~-------~~~~~~~~ 150 (221)
.++..+|++++|+|+.+.. ......|+..... .+.|.++|+||+|+.+.... .+...+. ....++++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl 159 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIV 159 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEE
Confidence 8899999999999998743 2333344444333 37899999999998653221 1222222 22357899
Q ss_pred EeecCCCC----------ChHHHHHHHHHHHh
Q 027593 151 EISAKSNY----------NFEKPFLYLARKLA 172 (221)
Q Consensus 151 ~~s~~~~~----------~i~~~~~~l~~~l~ 172 (221)
++|++.|. ++..+|+.|...+.
T Consensus 160 ~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 160 YASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred echhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 99999985 78999999888654
No 205
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.77 E-value=5.6e-19 Score=136.67 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=95.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--Cc--cc------------CCceeEeeeEEEEecCeEEEEEEEeCCCccccccc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFE--KK--YE------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~--~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 78 (221)
+|+++|++|+|||||+++++..... .. .. ...+.+.......+...+..+.+|||||...+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999997642211 00 00 01133333333444456678999999999877777
Q ss_pred ccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCce--EEEeecCC
Q 027593 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ--YYEISAKS 156 (221)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~--~~~~s~~~ 156 (221)
+..++..+|++++|+|++..........|.. ... .+.|.++++||+|............+....+.. .+.++...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~-~~~--~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEF-ADE--AGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHH-HHH--cCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence 7788899999999999998655443333332 222 278999999999987653322222333334443 34455677
Q ss_pred CCChHHHHHHH
Q 027593 157 NYNFEKPFLYL 167 (221)
Q Consensus 157 ~~~i~~~~~~l 167 (221)
+.++..+.+.+
T Consensus 158 ~~~~~~~vd~~ 168 (268)
T cd04170 158 GDDFKGVVDLL 168 (268)
T ss_pred CCceeEEEEcc
Confidence 77775544433
No 206
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.77 E-value=1e-17 Score=126.66 Aligned_cols=150 Identities=15% Similarity=0.067 Sum_probs=97.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc-------cccccccCcc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIHGQ 87 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~ 87 (221)
+|+++|++|+|||||++++.+... ......+++.......+...+..+++||+||...... ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~--~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS--EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc--cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 799999999999999999765432 1222334444444444444567899999999754321 1234578999
Q ss_pred EEEEEEeCCChhh-hccHHHHH--------------------------------------------HHH-----------
Q 027593 88 CAIIMFDVTARLT-YKNVPTWH--------------------------------------------RDL----------- 111 (221)
Q Consensus 88 ~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~~----------- 111 (221)
++++|+|+++... ...+...+ ..+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 9999999987542 11111111 111
Q ss_pred -----------HhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593 112 -----------CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 112 -----------~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l 171 (221)
.....-.|+++|+||+|+.... +...++. ...++++||+++.|++++|..|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~---~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE---ELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHH---HHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 1111235899999999985422 1112332 24589999999999999999999865
No 207
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.77 E-value=3e-18 Score=127.77 Aligned_cols=146 Identities=19% Similarity=0.200 Sum_probs=96.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-C----------------------------cccCCceeEeeeEEEEecCeEEEEE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFE-K----------------------------KYEPTIGVEVHPLDFFTNCGKIRFY 65 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~-~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (221)
+|+++|++|+|||||+++|+...-. . ......|++.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999997653211 0 0011256666666666666777899
Q ss_pred EEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc-c-----HHHH
Q 027593 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-----AKQV 139 (221)
Q Consensus 66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~-----~~~~ 139 (221)
+|||||+..+.......+..+|++++|+|++....-... ... .+.......++++|+||+|+..... . .+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~-~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~ 158 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHS-YILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL 158 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHH-HHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence 999999987765556668899999999999875321111 111 1112222345788999999864211 1 1112
Q ss_pred HHHHhcC---ceEEEeecCCCCChHH
Q 027593 140 TFHRKKN---LQYYEISAKSNYNFEK 162 (221)
Q Consensus 140 ~~~~~~~---~~~~~~s~~~~~~i~~ 162 (221)
.+....+ .+++++||++|.|+.+
T Consensus 159 ~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 159 AFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 2333344 4589999999999885
No 208
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.76 E-value=1.3e-18 Score=133.98 Aligned_cols=115 Identities=24% Similarity=0.274 Sum_probs=83.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCCC--------------cccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 78 (221)
+|+++|++|+|||||+++++. |.... ......|++.......+..++..+.+|||||...+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999864 21110 11234566666666666667889999999999888777
Q ss_pred ccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc
Q 027593 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (221)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~ 132 (221)
+...++.+|++++|+|+.+...-.....| ..... .++|+++++||+|+.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~-~~~~~--~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVW-RQADR--YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCEEEEEECCCCCCC
Confidence 88889999999999999875432222222 22222 37899999999998753
No 209
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=3.3e-17 Score=120.51 Aligned_cols=147 Identities=16% Similarity=0.068 Sum_probs=98.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 77 (221)
+.++|+++|+.++|||||+++++..... .......|++.......+...+..+.++||||...+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 4689999999999999999998753110 01122456777776666666778899999999987766
Q ss_pred cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcccccHH-----HHHHHHhc-----C
Q 027593 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAK-----QVTFHRKK-----N 146 (221)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~~~-----~~~~~~~~-----~ 146 (221)
.....+..+|++++|+|+.....-... .....+.. .+.| +++++||+|+.......+ ........ .
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTR-EHLLLARQ--VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 666668899999999999865322221 22222222 2566 779999999853221111 11222222 4
Q ss_pred ceEEEeecCCCCChH
Q 027593 147 LQYYEISAKSNYNFE 161 (221)
Q Consensus 147 ~~~~~~s~~~~~~i~ 161 (221)
++++++|+++|.++.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 689999999999853
No 210
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=5.1e-17 Score=114.07 Aligned_cols=163 Identities=21% Similarity=0.147 Sum_probs=114.4
Q ss_pred CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----cCCce---eEeeeEEEEec-CeEEEEEEEeCCCccccc
Q 027593 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----EPTIG---VEVHPLDFFTN-CGKIRFYCWDTAGQEKFG 76 (221)
Q Consensus 6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~ 76 (221)
++...+++.||+|.|+-++||||+++++......... ....+ +|.......+. +.+..+++++||||++++
T Consensus 3 ~~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFK 82 (187)
T ss_pred cccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHH
Confidence 4456788999999999999999999996543321100 00111 11111111111 234778999999999999
Q ss_pred ccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHh--cCceEEEeec
Q 027593 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK--KNLQYYEISA 154 (221)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~--~~~~~~~~s~ 154 (221)
..|..+.+.+.++++++|.+.+..+ .....+.-+.. ....|+++++||.|+.+.....+..+.... ...+.+..++
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~-~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a 160 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS-RNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDA 160 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhh-ccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeec
Confidence 9999999999999999999999887 22223332222 223999999999999987666654444433 3789999999
Q ss_pred CCCCChHHHHHHHHHH
Q 027593 155 KSNYNFEKPFLYLARK 170 (221)
Q Consensus 155 ~~~~~i~~~~~~l~~~ 170 (221)
..+.+..+.+..+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999998877666554
No 211
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.75 E-value=2.9e-17 Score=122.81 Aligned_cols=159 Identities=14% Similarity=0.217 Sum_probs=107.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCccccc-----ccccccccCccE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFG-----GLRDGYYIHGQC 88 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~-----~~~~~~~~~~~~ 88 (221)
||+++|++||||||+.+. +++++.+......|.|.......+. .+.+.+.+||+||+..+- ......++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~v-IF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSV-IFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHH-HHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHH-HHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999997 7777766666667777766655553 456899999999987543 345667999999
Q ss_pred EEEEEeCCChhhhccHH---HHHHHHHhhcCCCCEEEEEeCCCCCcccccHH--------HHHHHHhcC---ceEEEeec
Q 027593 89 AIIMFDVTARLTYKNVP---TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--------QVTFHRKKN---LQYYEISA 154 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~--------~~~~~~~~~---~~~~~~s~ 154 (221)
+|+|+|+.......++. ..+..+.+.+++..+-++++|+|+.......+ ........+ +.++.+|.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999999555444444 44555666678999999999999864322221 113333444 77888888
Q ss_pred CCCCChHHHHHHHHHHHhCCC
Q 027593 155 KSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 155 ~~~~~i~~~~~~l~~~l~~~~ 175 (221)
.+ +.+-++|..+++.|..+.
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTH
T ss_pred cC-cHHHHHHHHHHHHHcccH
Confidence 87 699999999999988543
No 212
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.75 E-value=8.1e-20 Score=127.73 Aligned_cols=163 Identities=33% Similarity=0.529 Sum_probs=138.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-EEEEEEeCCCcccccccccccccCccEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
-+++.|+|..|+|||+++.+++.-.+...+..++|++........+... +++++||++||+++.....-|++.+.+.++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 4899999999999999999999888887788899988887777666544 589999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCcccccH---HHHHHHHhcCc-eEEEeecCCCCChHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNL-QYYEISAKSNYNFEK 162 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~~~~~---~~~~~~~~~~~-~~~~~s~~~~~~i~~ 162 (221)
|||++....|+....|.+.+.... ...|+++..||||........ ...++++.+++ .++++|++.+.++.+
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 999999999999999999986653 246788999999998754433 23366777776 699999999999999
Q ss_pred HHHHHHHHHhCCC
Q 027593 163 PFLYLARKLAGDP 175 (221)
Q Consensus 163 ~~~~l~~~l~~~~ 175 (221)
+-..++..+..+.
T Consensus 185 a~r~lVe~~lvnd 197 (229)
T KOG4423|consen 185 AQRELVEKILVND 197 (229)
T ss_pred HHHHHHHHHHhhc
Confidence 9999998887654
No 213
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.75 E-value=3.1e-17 Score=138.00 Aligned_cols=152 Identities=23% Similarity=0.263 Sum_probs=100.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccCCceeEeeeEEEE------------ecCeEEEEEEEeCCCcccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFF------------TNCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~----~~~~~~~~~~~~~~~------------~~~~~~~~~~~D~~g~~~~ 75 (221)
+..-|+++|++++|||||+++|....+... .+.+.|.+....... +......+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 345799999999999999999876655322 222333332221110 0011123889999999999
Q ss_pred cccccccccCccEEEEEEeCCCh---hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc-------------HH--
Q 027593 76 GGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-------------AK-- 137 (221)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~-------------~~-- 137 (221)
...+..++..+|++++|+|+++. .+++.+.. +.. .+.|+++++||+|+...... ..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 88888889999999999999874 33333221 111 37899999999998531000 00
Q ss_pred --H---------HHHH--------------HhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 138 --Q---------VTFH--------------RKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 138 --~---------~~~~--------------~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
. ..+. .....+++++||++|.|++++..+|..
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0 0001 011368999999999999999988764
No 214
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.74 E-value=3e-17 Score=133.77 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=103.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc--cCCceeEeeeEEE----------------Ee----cC------eEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDF----------------FT----NC------GKI 62 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~--~~~~~~~~~~~~~----------------~~----~~------~~~ 62 (221)
+++++|+++|+.++|||||++++. +.+.... ....|.|...... +. +. ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt-~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALT-GVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHh-CeecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 578999999999999999999854 3322111 1111222221100 00 11 146
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH---HH-
Q 027593 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQ- 138 (221)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~---~~- 138 (221)
.+.+||+||++.|...+......+|++++|+|+++..........+..+ ......|+++++||+|+....... +.
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 8999999999988777777777889999999999753112222222222 222346789999999987532211 11
Q ss_pred HHHHHh---cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 139 VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 139 ~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
..+... .+++++++|+++|.|+++++++|...+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 122222 2578999999999999999999988653
No 215
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.74 E-value=2.7e-17 Score=112.95 Aligned_cols=133 Identities=20% Similarity=0.270 Sum_probs=85.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc----ccccccccccCccEEE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDGYYIHGQCAI 90 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~~~~~~~~i 90 (221)
||+++|+.|||||||+++|. +... .+..|..+. ..=.++||||--. +..........+|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~-~~~~-~~~KTq~i~------------~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALN-GEEI-RYKKTQAIE------------YYDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHc-CCCC-CcCccceeE------------ecccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 79999999999999999854 3322 222222211 1113479999432 2222233356899999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH-HHHHHHHhcCc-eEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l 167 (221)
++.|+++..+.-.- .....+ ++|+|-|+||+|+....... ...++....|+ ..|++|+.+|+|++++...|
T Consensus 69 ll~dat~~~~~~pP-~fa~~f-----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 69 LLQDATEPRSVFPP-GFASMF-----NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred EEecCCCCCccCCc-hhhccc-----CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence 99999987543211 111111 68999999999998322222 23344455554 57999999999999988766
No 216
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=6.5e-18 Score=130.01 Aligned_cols=117 Identities=20% Similarity=0.191 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC--CC---------------c---ccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEF--EK---------------K---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~--~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (221)
-+|+++|++|+|||||+++++...- .. . .....+.+.......+.+++..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4799999999999999999874211 00 0 01123445555556677788999999999998
Q ss_pred cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~ 133 (221)
+|.......++.+|++++|+|+++..... ...+...... .++|+++++||+|+....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCCCC
Confidence 87776667788999999999998753222 1122222221 378999999999987643
No 217
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.74 E-value=1.7e-17 Score=124.61 Aligned_cols=145 Identities=20% Similarity=0.175 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--C---------------------------CcccCCceeEeeeEEEEecCeEEEEE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYEPTIGVEVHPLDFFTNCGKIRFY 65 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (221)
+|+++|+.++|||||+.+|+...- . .......|++.+.....+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999764211 0 01122456777777777777788999
Q ss_pred EEeCCCcccccccccccccCccEEEEEEeCCChhh---h----ccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc---cc
Q 027593 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y----KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VK 135 (221)
Q Consensus 66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~---~~ 135 (221)
+|||||+..+.......+..+|++++|+|+++... | .....+. +......+|+++++||+|+.... ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL--LARTLGVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH--HHHHcCCCeEEEEEEccccccccccHHH
Confidence 99999987776555556778999999999998521 1 1122221 12222347899999999997321 11
Q ss_pred H-H---HH-HHHHhc-----CceEEEeecCCCCChH
Q 027593 136 A-K---QV-TFHRKK-----NLQYYEISAKSNYNFE 161 (221)
Q Consensus 136 ~-~---~~-~~~~~~-----~~~~~~~s~~~~~~i~ 161 (221)
. + .. ...... ..+++++||++|.|++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 1 11 122222 3679999999999987
No 218
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.73 E-value=6.7e-17 Score=131.69 Aligned_cols=161 Identities=18% Similarity=0.156 Sum_probs=101.5
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc--cCCceeEeeeEEEE--e------------------c--C----e
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFF--T------------------N--C----G 60 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~--~~~~~~~~~~~~~~--~------------------~--~----~ 60 (221)
...+.++|+++|+.++|||||+.+|. +.+.... ....|.|....... . . + .
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~-~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALT-GVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhh-CeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 46788999999999999999999853 3322211 11233333321100 0 0 0 1
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH---
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--- 136 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~--- 136 (221)
...+.+|||||+..+..........+|++++|+|+++.. .......+ ..+ ......|+++|+||+|+.+.....
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l-~~~~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MAL-DIIGIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHH-HHcCCCcEEEEEEeeccccchhHHHHH
Confidence 368999999999877655444456779999999999653 11111111 111 122235789999999986532211
Q ss_pred HHH-HHHHh---cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 137 KQV-TFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 137 ~~~-~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
+.. .+... .+.+++++|+++|.|++++++.|...+.
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 111 22222 2578999999999999999999988653
No 219
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.73 E-value=3.8e-17 Score=123.78 Aligned_cols=116 Identities=20% Similarity=0.185 Sum_probs=85.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--------C--------cccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFE--------K--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 78 (221)
+|+++|+.|+|||||+++++...-. . ......+.+.......+...+..+.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999998753211 0 00123455555556666667889999999999988888
Q ss_pred ccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (221)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~ 133 (221)
+..+++.+|++++|+|+++..... ...+...... .++|+++++||+|+....
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~--~~~P~iivvNK~D~~~a~ 132 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK--LNIPTIIFVNKIDRAGAD 132 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH--cCCCEEEEEECccccCCC
Confidence 888899999999999999864432 2233333332 378999999999987543
No 220
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.1e-17 Score=110.94 Aligned_cols=158 Identities=22% Similarity=0.316 Sum_probs=118.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.++.+|.++|..|+||||++-++-.+. .....|++|.... .+.+.+..+++||..|+-..+..|+.|+.+.+++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvge-vvttkPtigfnve----~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGE-VVTTKPTIGFNVE----TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCc-ccccCCCCCcCcc----ccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 378999999999999999988743333 2344556654333 33447899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~~ 163 (221)
+|+|.+|+.........+..+... ..+..+++++||.|........+.. .......+..+.+||..|.|++.+
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence 999999987665444333333222 3466778899999998765555433 223334578999999999999999
Q ss_pred HHHHHHHHhC
Q 027593 164 FLYLARKLAG 173 (221)
Q Consensus 164 ~~~l~~~l~~ 173 (221)
.+|+.+.+..
T Consensus 171 ~DWL~~~l~~ 180 (182)
T KOG0072|consen 171 MDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 221
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.72 E-value=1.3e-16 Score=129.66 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=101.0
Q ss_pred CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCC--------------CCcccCCceeEeeeEEEEecCeEEEEEE
Q 027593 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYC 66 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (221)
|+ +.-...+++.++|+++|+.++|||||+++|+.... ........|+|.......+...+..+.+
T Consensus 1 ~~-~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~l 79 (394)
T TIGR00485 1 MA-KEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAH 79 (394)
T ss_pred Cc-hhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEE
Confidence 45 34444578899999999999999999999763210 0011223667777766677667788999
Q ss_pred EeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCCCcccccH-----HHHH
Q 027593 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKA-----KQVT 140 (221)
Q Consensus 67 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-~v~nk~D~~~~~~~~-----~~~~ 140 (221)
|||||++.|..........+|++++|+|+......... ..+..+.. .+.|.+ +++||+|+.+..... +...
T Consensus 80 iDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~ 156 (394)
T TIGR00485 80 VDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRE 156 (394)
T ss_pred EECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHH
Confidence 99999988765554456678999999999875322221 12222222 256755 689999986532211 1223
Q ss_pred HHHhcC-----ceEEEeecCCCC
Q 027593 141 FHRKKN-----LQYYEISAKSNY 158 (221)
Q Consensus 141 ~~~~~~-----~~~~~~s~~~~~ 158 (221)
+....+ ++++++|+.++.
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 157 LLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHhcCCCccCccEEECcccccc
Confidence 333332 789999999874
No 222
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.71 E-value=1.8e-16 Score=120.29 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=113.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEE-EEEEEeCCCccccccccccc-------cc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-RFYCWDTAGQEKFGGLRDGY-------YI 84 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~-------~~ 84 (221)
-..|+++|.|++|||||++++...+ +...+...+|.++...++...+. .+.+-|+||...-....+.. +.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 3568999999999999999965443 46778888899998877766554 49999999977655444432 56
Q ss_pred CccEEEEEEeCCCh---hhhccHHHHHHHHHhh---cCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCC
Q 027593 85 HGQCAIIMFDVTAR---LTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSN 157 (221)
Q Consensus 85 ~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~---~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 157 (221)
.+..+++|+|++.. ..++.+..+..++..+ ..++|.++|+||+|+.+.+... ..++...+.- .++++||+++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH-HHHHHHHcCCCcEEEeeeccc
Confidence 78999999999988 6666665554444333 4689999999999996332221 1344455444 4899999999
Q ss_pred CChHHHHHHHHH
Q 027593 158 YNFEKPFLYLAR 169 (221)
Q Consensus 158 ~~i~~~~~~l~~ 169 (221)
+++.++...|-.
T Consensus 353 egl~~ll~~lr~ 364 (366)
T KOG1489|consen 353 EGLEELLNGLRE 364 (366)
T ss_pred cchHHHHHHHhh
Confidence 999998766643
No 223
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=5.1e-16 Score=111.42 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=109.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCc----------ccccccc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLR 79 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~ 79 (221)
+....-|+++|.+++|||||||.+++.+-....+.++|.|+....+.+++. +.++|.||- +.+....
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 345678999999999999999997776766788899999999988877654 889999992 2233333
Q ss_pred ccccc---CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-HHHHhc----Cce--E
Q 027593 80 DGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK----NLQ--Y 149 (221)
Q Consensus 80 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~~----~~~--~ 149 (221)
..|+. +-.++++++|+.....-.+. ...+.+... +.|+++++||+|........... ...... ... +
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~ 174 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV 174 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence 44443 34677888888766443222 233333332 89999999999987644343222 122111 112 7
Q ss_pred EEeecCCCCChHHHHHHHHHHHh
Q 027593 150 YEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 150 ~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
+..|+..+.|++++...|...+.
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEEecccccCHHHHHHHHHHHhh
Confidence 78899999999999998888764
No 224
>PRK12736 elongation factor Tu; Reviewed
Probab=99.71 E-value=3e-16 Score=127.49 Aligned_cols=162 Identities=14% Similarity=0.057 Sum_probs=107.1
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccCCceeEeeeEEEEecCeEEEEEEEeCCCc
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (221)
....++.++|+++|+.++|||||+++|+..... .......|+|.......+...+..+.++||||+
T Consensus 6 ~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 6 FDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred hccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH
Confidence 345788999999999999999999997742110 011225567777766666666778899999999
Q ss_pred ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcccccHH-----HHHHHHhc-
Q 027593 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAK-----QVTFHRKK- 145 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~~~-----~~~~~~~~- 145 (221)
++|.......+..+|++++|+|+.....-... ..+..+.. .+.| +++++||+|+.+.....+ ...+....
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 87765555556788999999999875322221 22222222 2677 678899999864322211 11222222
Q ss_pred ----CceEEEeecCCCC--------ChHHHHHHHHHHH
Q 027593 146 ----NLQYYEISAKSNY--------NFEKPFLYLARKL 171 (221)
Q Consensus 146 ----~~~~~~~s~~~~~--------~i~~~~~~l~~~l 171 (221)
..+++++|+++|. ++..+++.|.+.+
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 3589999999983 4667666666654
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.70 E-value=2.2e-16 Score=118.59 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCC------------ceeEeeeEE------------------------EEec
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT------------IGVEVHPLD------------------------FFTN 58 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~------------~~~~~~~~~------------------------~~~~ 58 (221)
||+++|+.++|||||+++|..+.+.+..... .|.+..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999998876664311100 111110000 0111
Q ss_pred CeEEEEEEEeCCCcccccccccccc--cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH
Q 027593 59 CGKIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (221)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~ 136 (221)
..+..+.++||||++.+.......+ ..+|++++|+|+.....-. ...++..+... ++|+++|+||+|+.+.....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~ 157 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL--NIPVFVVVTKIDLAPANILQ 157 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEECccccCHHHHH
Confidence 2346789999999988755443333 3689999999988654322 12233333322 78999999999985432221
Q ss_pred HHH-H---HHH--------------------------hcCceEEEeecCCCCChHHHHHHHHH
Q 027593 137 KQV-T---FHR--------------------------KKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 137 ~~~-~---~~~--------------------------~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
+.. + ... ....++|.+|+.+|.|+++++..|..
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 111 1 111 11348999999999999998876654
No 226
>PRK12735 elongation factor Tu; Reviewed
Probab=99.70 E-value=3.7e-16 Score=127.02 Aligned_cols=160 Identities=12% Similarity=0.026 Sum_probs=105.1
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCC--------------CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (221)
..+++.++|+++|+.++|||||+++|+.... ........|+|.......+...+..+.++||||+.
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 4568899999999999999999999875210 00112245677776666666666789999999998
Q ss_pred cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCCCcccccH-----HHHHHHHhc--
Q 027593 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKA-----KQVTFHRKK-- 145 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-~v~nk~D~~~~~~~~-----~~~~~~~~~-- 145 (221)
.|.......+..+|++++|+|+........ ...+..+.. .+.|.+ +++||+|+....... +...+....
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 776555566778999999999987532221 122222221 267865 679999986422111 111223322
Q ss_pred ---CceEEEeecCCCC----------ChHHHHHHHHHH
Q 027593 146 ---NLQYYEISAKSNY----------NFEKPFLYLARK 170 (221)
Q Consensus 146 ---~~~~~~~s~~~~~----------~i~~~~~~l~~~ 170 (221)
..+++++|+.+|. ++..+++.|...
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 3689999999984 456666666654
No 227
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.70 E-value=3.6e-16 Score=132.06 Aligned_cols=153 Identities=24% Similarity=0.287 Sum_probs=97.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccCCceeEeeeEEEEe--cCeE-----E-----EEEEEeCCCccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFT--NCGK-----I-----RFYCWDTAGQEK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~-----~-----~~~~~D~~g~~~ 74 (221)
.+...|+++|++++|||||++++.+...... ...+.|.+........ .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4557899999999999999999654322111 1123333322211100 0111 1 278999999999
Q ss_pred ccccccccccCccEEEEEEeCCC---hhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc---c-------------
Q 027593 75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---K------------- 135 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~---~------------- 135 (221)
|...+...+..+|++++|+|+++ ..++..+.. +.. .+.|+++++||+|+..... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 98887777889999999999997 344433322 111 3789999999999842100 0
Q ss_pred -HH--------HHHHHH---------------hcCceEEEeecCCCCChHHHHHHHHH
Q 027593 136 -AK--------QVTFHR---------------KKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 136 -~~--------~~~~~~---------------~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
.. ...... ...++++++|+.+|.|+++++..+..
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 000101 12367999999999999998887754
No 228
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=4e-16 Score=119.19 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=111.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc-c--------cccccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-G--------GLRDGY 82 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~--------~~~~~~ 82 (221)
.-.+|.|.|.||||||||++++... .+...+.+.+|-..+...+..+..+++++||||.-+- - ......
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~A--kpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTA--KPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcC--CCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 4578999999999999999985543 3566778888888888888888899999999994321 1 111122
Q ss_pred ccCccEEEEEEeCCChhh--hccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhc-CceEEEeecCCCCC
Q 027593 83 YIHGQCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSNYN 159 (221)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 159 (221)
-.-.++++|++|.+.... .+....+...+..... .|+++|+||.|..+.....+........ +.....+++..+.+
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCG 323 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhh
Confidence 234578999999886544 4555566666666655 8999999999987644444333233333 34467788888888
Q ss_pred hHHHHHHHHHH
Q 027593 160 FEKPFLYLARK 170 (221)
Q Consensus 160 i~~~~~~l~~~ 170 (221)
++.+...+...
T Consensus 324 ~d~~~~~v~~~ 334 (346)
T COG1084 324 LDKLREEVRKT 334 (346)
T ss_pred HHHHHHHHHHH
Confidence 88877777665
No 229
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.69 E-value=1.2e-15 Score=129.59 Aligned_cols=155 Identities=13% Similarity=0.056 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+-|+++|+.++|||||+++|.+..... ......|+|.......+. ..+..+.+|||||++.|.......+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 358999999999999999966322111 112224555544332221 123568999999999887666666889999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcccccH----HHHHHHHhc---CceEEEeecCCCCChHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA----KQVTFHRKK---NLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~~----~~~~~~~~~---~~~~~~~s~~~~~~i~~~ 163 (221)
|+|+++...-.. ...+. +.... +.| +++|+||+|+.+..... +...+.... ..+++++|+++|.|++++
T Consensus 81 VVda~eg~~~qT-~ehl~-il~~l-gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L 157 (614)
T PRK10512 81 VVACDDGVMAQT-REHLA-ILQLT-GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDAL 157 (614)
T ss_pred EEECCCCCcHHH-HHHHH-HHHHc-CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHH
Confidence 999987422111 11111 21222 455 57999999986532111 112232222 368999999999999999
Q ss_pred HHHHHHHH
Q 027593 164 FLYLARKL 171 (221)
Q Consensus 164 ~~~l~~~l 171 (221)
+..|....
T Consensus 158 ~~~L~~~~ 165 (614)
T PRK10512 158 REHLLQLP 165 (614)
T ss_pred HHHHHHhh
Confidence 99998754
No 230
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.67 E-value=4.7e-16 Score=126.37 Aligned_cols=189 Identities=16% Similarity=0.186 Sum_probs=134.3
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
..+..+||+++|..|+|||||+-.++...+.+...+-... -.+...+.-..+..+++|++..+..+.....-++.+++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~--i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR--ILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc--cccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 3567899999999999999999998888887655443321 11113334455668999998766655665667899999
Q ss_pred EEEEEeCCChhhhccHH-HHHHHHHhhc---CCCCEEEEEeCCCCCccccc-HHH--HHHHHhc--CceEEEeecCCCCC
Q 027593 89 AIIMFDVTARLTYKNVP-TWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK-AKQ--VTFHRKK--NLQYYEISAKSNYN 159 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~-~~~--~~~~~~~--~~~~~~~s~~~~~~ 159 (221)
++++|+++++.+.+.+. .|+..+++.. -..|+|+|+||+|....... .+. ..+.... --.+++|||++..+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 99999999999998875 8999998876 58999999999998754333 111 1111111 12478899999999
Q ss_pred hHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHH
Q 027593 160 FEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA 205 (221)
Q Consensus 160 i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~ 205 (221)
+.++|-..-+++.. ...|......+.+.+.........++
T Consensus 163 ~~e~fYyaqKaVih------Pt~PLyda~~qelkp~~v~al~RIFk 202 (625)
T KOG1707|consen 163 VSELFYYAQKAVIH------PTSPLYDAEEQELKPRCVKALKRIFK 202 (625)
T ss_pred hHhhhhhhhheeec------cCccccccccccccHHHHHHHHHHHh
Confidence 99999665555443 33455555556666666666655554
No 231
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.67 E-value=1.5e-15 Score=112.36 Aligned_cols=156 Identities=15% Similarity=0.219 Sum_probs=92.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCce---eEeeeEEEEecCeEEEEEEEeCCCccccccccccc-----cc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----YI 84 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~~ 84 (221)
.++|+++|.+|+|||||+|.+++...........+ ++.....+.. .....+.+||+||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 37999999999999999999776443222222222 1111111111 112468999999975433222223 56
Q ss_pred CccEEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcccc---------cHHHH----HH----HHh--
Q 027593 85 HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV---------KAKQV----TF----HRK-- 144 (221)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~---------~~~~~----~~----~~~-- 144 (221)
.+|.++++.+. .|.... .|+..+... +.|+++|+||+|+..... ..+.. +. ...
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 77888887432 233333 455555444 689999999999842111 01111 11 111
Q ss_pred -cCceEEEeecC--CCCChHHHHHHHHHHHhCCC
Q 027593 145 -KNLQYYEISAK--SNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 145 -~~~~~~~~s~~--~~~~i~~~~~~l~~~l~~~~ 175 (221)
..-++|.+|+. .+.++..+...+...|....
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 12367888887 56789998888888876543
No 232
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.67 E-value=9.5e-17 Score=138.80 Aligned_cols=143 Identities=19% Similarity=0.176 Sum_probs=96.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc--CCCCC--cc------------cCCceeEeeeEEEEecCeEEEEEEEeCCCcccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~--~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (221)
.--+|+|+|+.++|||||+++|+. +.... .. ....|++.......+..++..+.+|||||+..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 346999999999999999999863 21100 01 113466666666666667889999999999888
Q ss_pred cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc----eEEE
Q 027593 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL----QYYE 151 (221)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~----~~~~ 151 (221)
...+...+..+|++++|+|+.+.........|.. ... .+.|+++++||+|+...........+....+. ..++
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~~--~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQ-ANR--YEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLP 165 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHH-HHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence 7777888999999999999998655443333332 222 27899999999999764322212222222222 3566
Q ss_pred eecCCC
Q 027593 152 ISAKSN 157 (221)
Q Consensus 152 ~s~~~~ 157 (221)
+|+..+
T Consensus 166 is~~~~ 171 (689)
T TIGR00484 166 IGAEDN 171 (689)
T ss_pred cccCCC
Confidence 776654
No 233
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.66 E-value=4.5e-16 Score=116.54 Aligned_cols=113 Identities=21% Similarity=0.243 Sum_probs=79.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCc-----------------ccCCceeEeeeEEEEe-----cCeEEEEEEEeCCCc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQ 72 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~ 72 (221)
+|+++|+.|+|||||+++|+....... .....|++.......+ .+..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999886443211 0112334443333332 345689999999999
Q ss_pred ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~ 130 (221)
..+......++..+|++++|+|++...++.. ..+...... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence 9887777788899999999999987765432 222222222 368999999999974
No 234
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.66 E-value=3.7e-16 Score=116.89 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=79.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--CCc------------ccCCceeEeeeEE--EEec--------CeEEEEEEEeCC
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEF--EKK------------YEPTIGVEVHPLD--FFTN--------CGKIRFYCWDTA 70 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~--~~~------------~~~~~~~~~~~~~--~~~~--------~~~~~~~~~D~~ 70 (221)
+|+++|+.++|||||+.+|+...- ... .....|.+..... ..+. +....+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 699999999999999999775321 100 0111233333222 2222 337889999999
Q ss_pred CcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~ 130 (221)
|+..|......+++.+|++++|+|+...........+..... .+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH---cCCCEEEEEECCCcc
Confidence 999999888889999999999999998765554333333222 268999999999975
No 235
>PLN03126 Elongation factor Tu; Provisional
Probab=99.65 E-value=1.2e-15 Score=125.87 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=101.0
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCC------CCC--------cccCCceeEeeeEEEEecCeEEEEEEEeCCCc
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGE------FEK--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (221)
+...++.++|+++|+.++|||||+++|+... ... ......|++.+.....+...+..+.++|+||+
T Consensus 75 ~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 75 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred hhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence 3356889999999999999999999987511 111 12334567766666666666778999999999
Q ss_pred ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcccccHH-----HHHHHHh--
Q 027593 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAK-----QVTFHRK-- 144 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~~~-----~~~~~~~-- 144 (221)
..|.......+..+|++++|+|+.....-... .++..... -++| +++++||+|+.......+ ...+...
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~-e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 98876666667789999999999876432222 22222222 2677 678999999865322111 1122222
Q ss_pred ---cCceEEEeecCCCCC
Q 027593 145 ---KNLQYYEISAKSNYN 159 (221)
Q Consensus 145 ---~~~~~~~~s~~~~~~ 159 (221)
..++++++|+.++.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 257899999988754
No 236
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.65 E-value=1.3e-14 Score=107.30 Aligned_cols=163 Identities=12% Similarity=-0.007 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc-----------ccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------DGY 82 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----------~~~ 82 (221)
++|+++|.+|+|||||+|.+++...........+.|...........+..+.++||||........ ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 489999999999999999977654433222233455544444333356789999999965432110 112
Q ss_pred ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcC---CCCEEEEEeCCCCCcccc--------cHHHHHHHHhcCceEEE
Q 027593 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQV--------KAKQVTFHRKKNLQYYE 151 (221)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~i~v~nk~D~~~~~~--------~~~~~~~~~~~~~~~~~ 151 (221)
....+++++|+++.. .+- .....+..+....+ -.++++++|+.|...... ..........++-.++.
T Consensus 81 ~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 356799999999876 221 12233444433322 368899999999754221 12223344444544444
Q ss_pred ee-----cCCCCChHHHHHHHHHHHhC-CCCCc
Q 027593 152 IS-----AKSNYNFEKPFLYLARKLAG-DPNLH 178 (221)
Q Consensus 152 ~s-----~~~~~~i~~~~~~l~~~l~~-~~~~~ 178 (221)
.+ +..+.++.+++..|...+.. .+..+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~ 191 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKENGGKPY 191 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCC
Confidence 33 45577889999999998876 34333
No 237
>CHL00071 tufA elongation factor Tu
Probab=99.65 E-value=4.2e-15 Score=121.39 Aligned_cols=148 Identities=14% Similarity=0.054 Sum_probs=99.3
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (221)
.+++.++|+++|++++|||||+++|+..... .......|++.......+..++.++.++||||+..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 3678899999999999999999998753110 11122367777776666666677899999999887
Q ss_pred ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcccccHH-----HHHHHHhc---
Q 027593 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAK-----QVTFHRKK--- 145 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~~~-----~~~~~~~~--- 145 (221)
+.......+..+|++++|+|+.....-.. ...+..+.. .+.| +++++||+|+.+.....+ ...+....
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 76655666788999999999986532221 112222221 2678 678999999875322211 11222222
Q ss_pred --CceEEEeecCCCCC
Q 027593 146 --NLQYYEISAKSNYN 159 (221)
Q Consensus 146 --~~~~~~~s~~~~~~ 159 (221)
..+++++|+.+|.+
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 165 GDDIPIVSGSALLALE 180 (409)
T ss_pred CCcceEEEcchhhccc
Confidence 26899999998864
No 238
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.65 E-value=5.5e-15 Score=114.36 Aligned_cols=140 Identities=17% Similarity=0.273 Sum_probs=85.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCc----------ccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc------
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------ 76 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------ 76 (221)
.++|+|+|.+|+|||||+|+++....... ..++.+..........++..+.+.+|||||.....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999877665432 22333334444444556667899999999943221
Q ss_pred --------------------cccccccc--CccEEEEEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593 77 --------------------GLRDGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (221)
Q Consensus 77 --------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~~ 133 (221)
..+...+. .+++++++++.+.. ..... ...+..+ ....|+++|+||+|+....
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l---~~~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRL---SKRVNIIPVIAKADTLTPE 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHH---hccCCEEEEEECCCcCCHH
Confidence 11112333 35667777776542 22221 1223333 2378999999999985422
Q ss_pred c----cHHHHHHHHhcCceEEEeecCC
Q 027593 134 V----KAKQVTFHRKKNLQYYEISAKS 156 (221)
Q Consensus 134 ~----~~~~~~~~~~~~~~~~~~s~~~ 156 (221)
. .....+.....++.+|......
T Consensus 160 e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 160 ELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 1 1123355667788888766543
No 239
>PRK13351 elongation factor G; Reviewed
Probab=99.64 E-value=2.6e-15 Score=130.15 Aligned_cols=118 Identities=21% Similarity=0.244 Sum_probs=86.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCC-------------CCcc---cCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-------------EKKY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (221)
....+|+|+|+.|+|||||+++|+...- ..++ ....+.+.......+.+.+..+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 3467999999999999999999875221 0000 01234444444445555678999999999998
Q ss_pred ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
+...+..+++.+|++++|+|+++.........|.. +.. .+.|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~-~~~--~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQ-ADR--YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHh--cCCCEEEEEECCCCCC
Confidence 88888888999999999999998766655444433 222 2789999999999754
No 240
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.64 E-value=3.3e-15 Score=122.76 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=103.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCC--C---------------------------CcccCCceeEeeeEEEEecCe
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (221)
+++.++|+++|+.++|||||+.+|+...- . .......|+|.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 67889999999999999999998775211 0 011223466666666666777
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhcc------HHHHHHHHHhhcCCC-CEEEEEeCCCCCccc
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN------VPTWHRDLCRVCENI-PIVLCGNKVDVKNRQ 133 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~-p~i~v~nk~D~~~~~ 133 (221)
+..+.++|+||+.+|.......+..+|++++|+|+++. .|+. .......+... .+. ++++++||+|+....
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~-~gi~~iIV~vNKmD~~~~~ 161 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT-LGVKQMICCCNKMDATTPK 161 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH-cCCCcEEEEEEcccCCchh
Confidence 88999999999999988888888999999999999873 3321 11111111111 255 578899999976211
Q ss_pred c--------cHHHHHHHHhcC-----ceEEEeecCCCCChHH
Q 027593 134 V--------KAKQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (221)
Q Consensus 134 ~--------~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~ 162 (221)
. ..+...+....+ ++++++|+++|.|+.+
T Consensus 162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 112223344443 6799999999999853
No 241
>PRK00049 elongation factor Tu; Reviewed
Probab=99.64 E-value=8.2e-15 Score=119.12 Aligned_cols=159 Identities=13% Similarity=0.041 Sum_probs=104.6
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (221)
...++.++|+++|+.++|||||+++|+..... .......|+|.......+...+..+.++||||+.
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 35688999999999999999999998752110 0112256777777666666667789999999998
Q ss_pred cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCCCcccccHH-----HHHHHHh---
Q 027593 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKAK-----QVTFHRK--- 144 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-~v~nk~D~~~~~~~~~-----~~~~~~~--- 144 (221)
.+.......+..+|++++|+|+.....-.. ...+..+.. .+.|.+ +++||+|+.......+ ...+...
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 776655666789999999999987532221 122222222 267876 6899999864222111 1122222
Q ss_pred --cCceEEEeecCCCC----------ChHHHHHHHHH
Q 027593 145 --KNLQYYEISAKSNY----------NFEKPFLYLAR 169 (221)
Q Consensus 145 --~~~~~~~~s~~~~~----------~i~~~~~~l~~ 169 (221)
...+++++|++++. ++..+++.|..
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~ 200 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS 200 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence 24689999999864 34555555554
No 242
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.63 E-value=7.7e-15 Score=115.22 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=44.1
Q ss_pred CCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHH-HHHHHHhCCCCCcc
Q 027593 117 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL-YLARKLAGDPNLHF 179 (221)
Q Consensus 117 ~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~-~l~~~l~~~~~~~~ 179 (221)
.+|+++++||.|+.......+... .......++.+||+.+.++.++.+ .+...+...+.+..
T Consensus 214 ~KPvI~VlNK~Dl~~~~~~~~~l~-~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~ 276 (318)
T cd01899 214 SKPMVIAANKADIPDAENNISKLR-LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEI 276 (318)
T ss_pred CCcEEEEEEHHHccChHHHHHHHH-hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCcee
Confidence 469999999999753322122111 122356799999999999999997 69998877776554
No 243
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=5.5e-15 Score=119.42 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=126.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCC-------CC------cccCCceeEeeeEEEEecCeE---EEEEEEeCCCccccc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEF-------EK------KYEPTIGVEVHPLDFFTNCGK---IRFYCWDTAGQEKFG 76 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~D~~g~~~~~ 76 (221)
.-+++|+-+-.-|||||..+++.-.- .. ......|+|....+.++.+.+ ..++++||||+.+|.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 45789999999999999999764111 11 123467888888888776555 999999999999999
Q ss_pred ccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH---HHHHHHhcCceEEEee
Q 027593 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEIS 153 (221)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~---~~~~~~~~~~~~~~~s 153 (221)
......+..++++++|+|++...--+.+..+...+. .+..+|.|+||.|++......- ..+.......+.+.+|
T Consensus 140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe---~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vS 216 (650)
T KOG0462|consen 140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE---AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVS 216 (650)
T ss_pred ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH---cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEE
Confidence 999999999999999999998755444444333333 3889999999999987544332 2344455566899999
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCccccCCCC
Q 027593 154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 185 (221)
Q Consensus 154 ~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~ 185 (221)
|++|-++.+++.+|++.+. |.....|.|..
T Consensus 217 AK~G~~v~~lL~AII~rVP--pP~~~~d~plr 246 (650)
T KOG0462|consen 217 AKTGLNVEELLEAIIRRVP--PPKGIRDAPLR 246 (650)
T ss_pred eccCccHHHHHHHHHhhCC--CCCCCCCcchH
Confidence 9999999999999999875 33344555543
No 244
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=8.2e-15 Score=117.22 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=114.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc-ccccc--------ccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLR--------DGY 82 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~--------~~~ 82 (221)
..+.|+++|+||+|||||+|. +.+.....+.+..|+|++.....++-+++.+.+.||+|..+ ..... ...
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNa-L~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNA-LSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHH-HhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 459999999999999999998 66777788899999999999999998999999999999765 11111 223
Q ss_pred ccCccEEEEEEeCC--ChhhhccHHHHHHHHHhhc-------CCCCEEEEEeCCCCCcccccHHH--H---HHHHhcCc-
Q 027593 83 YIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVC-------ENIPIVLCGNKVDVKNRQVKAKQ--V---TFHRKKNL- 147 (221)
Q Consensus 83 ~~~~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~-------~~~p~i~v~nk~D~~~~~~~~~~--~---~~~~~~~~- 147 (221)
+..+|.+++|+|+. +..+-..+...++...... ...|++++.||.|+......... . .......+
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~ 425 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP 425 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence 67899999999994 3333333333333332221 24789999999998654211111 1 11111123
Q ss_pred eEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 148 QYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 148 ~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
...++|+++++|++++...|...+..
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHHHH
Confidence 34559999999999999998887654
No 245
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.62 E-value=4.1e-15 Score=123.16 Aligned_cols=152 Identities=17% Similarity=0.190 Sum_probs=98.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCC--C-----------------------------cccCCceeEeeeEEEEec
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--K-----------------------------KYEPTIGVEVHPLDFFTN 58 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~ 58 (221)
.++.++|+++|+.++|||||+++++...-. . ......|+|.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 467799999999999999999998753210 0 001123444555445555
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc-cHH
Q 027593 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAK 137 (221)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~~~ 137 (221)
..+..+.++||||+..|.......+..+|++++|+|+.....-.....+ .+.......|+++++||+|+..... ..+
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLGIKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhCCCceEEEEEeeccccchhHHHH
Confidence 5677899999999887755444457899999999999865322221111 1112222457899999999864211 111
Q ss_pred -HH----HHHHh----cCceEEEeecCCCCChHHH
Q 027593 138 -QV----TFHRK----KNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 138 -~~----~~~~~----~~~~~~~~s~~~~~~i~~~ 163 (221)
.. .+... ...+++++|+++|.|+.++
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 11 11222 2478999999999999764
No 246
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.61 E-value=4.3e-15 Score=124.09 Aligned_cols=119 Identities=19% Similarity=0.213 Sum_probs=84.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc--CCCC--C----------------cccCCceeEeeeEEEEecCeEEEEEEEeCCC
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFE--K----------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~--~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (221)
+..+|+|+|+.|+|||||+++|+. +... . ......|.++......+.+++..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456999999999999999999863 1110 0 0111235555555566667788999999999
Q ss_pred cccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~ 133 (221)
+..|......+++.+|++++|+|+++..... ...+...... .+.|+++++||+|+....
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~--~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL--RDTPIFTFINKLDRDGRE 147 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh--cCCCEEEEEECCcccccC
Confidence 9988877777889999999999998753221 1222222211 389999999999987644
No 247
>COG2262 HflX GTPases [General function prediction only]
Probab=99.61 E-value=2.8e-14 Score=112.33 Aligned_cols=174 Identities=16% Similarity=0.137 Sum_probs=116.6
Q ss_pred CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCccc--cccccccc
Q 027593 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK--FGGLRDGY 82 (221)
Q Consensus 6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~--~~~~~~~~ 82 (221)
..|..-.-..|+++|-.++|||||+|++.... .........|.++.+..+... +..+.+-||-|... ...+...|
T Consensus 185 ~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AF 262 (411)
T COG2262 185 KKRSRSGIPLVALVGYTNAGKSTLFNALTGAD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAF 262 (411)
T ss_pred hhhcccCCCeEEEEeeccccHHHHHHHHhccC--eeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHH
Confidence 34555567899999999999999999966332 222344455555555444322 46788889999432 22222222
Q ss_pred ------ccCccEEEEEEeCCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecC
Q 027593 83 ------YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 155 (221)
Q Consensus 83 ------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~ 155 (221)
...+|.++.|+|++++.....+......+... ...+|+++|.||.|....... ........-..+.+||+
T Consensus 263 ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~~~v~iSA~ 339 (411)
T COG2262 263 KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSPNPVFISAK 339 (411)
T ss_pred HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCCCeEEEEec
Confidence 45889999999999996666665555555554 357999999999997644331 11111111158999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCC
Q 027593 156 SNYNFEKPFLYLARKLAGDPNLHFVESPA 184 (221)
Q Consensus 156 ~~~~i~~~~~~l~~~l~~~~~~~~~~ep~ 184 (221)
+|.|++.++..|...+........+.-|.
T Consensus 340 ~~~gl~~L~~~i~~~l~~~~~~~~l~lp~ 368 (411)
T COG2262 340 TGEGLDLLRERIIELLSGLRTEVTLELPY 368 (411)
T ss_pred cCcCHHHHHHHHHHHhhhcccceEEEcCc
Confidence 99999999999999887655444444444
No 248
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.61 E-value=1.5e-14 Score=118.89 Aligned_cols=150 Identities=20% Similarity=0.218 Sum_probs=100.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc--CCCC---------------------------CcccCCceeEeeeEEEEecCe
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFE---------------------------KKYEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (221)
+++.++|+++|+.++|||||+.+++. |... .......|.+.+.....+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 57889999999999999999999875 2111 011224466666666667777
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh---hh----ccHHHHHHHHHhhcCCCC-EEEEEeCCCCCc-
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY----KNVPTWHRDLCRVCENIP-IVLCGNKVDVKN- 131 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~- 131 (221)
+..+.++||||+.+|.......+..+|++++|+|+.... .| ...+.|. +... -+.| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~--~~~~-~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL--LAFT-LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH--HHHH-cCCCeEEEEEEccccccc
Confidence 889999999999988777777788999999999998653 11 1111121 1111 1555 678999999532
Q ss_pred --ccccH-----HHHHHHHhc-----CceEEEeecCCCCChHH
Q 027593 132 --RQVKA-----KQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (221)
Q Consensus 132 --~~~~~-----~~~~~~~~~-----~~~~~~~s~~~~~~i~~ 162 (221)
.+... +........ .++++++|+.+|.|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111 111222222 46899999999999853
No 249
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.61 E-value=5e-15 Score=100.27 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=68.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc---------cccccccC
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYIH 85 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~~ 85 (221)
+|+|+|.+|+|||||+|+++... ........+.+.......+...+..+.++||||...... .....+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK-LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST-SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccc-cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 69999999999999999977533 333344445555543222222445567999999643211 12223478
Q ss_pred ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeC
Q 027593 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 126 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk 126 (221)
+|++++|+|+.+... ......+..+. ...|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 899999999877321 22233334442 48999999998
No 250
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.61 E-value=1e-14 Score=118.88 Aligned_cols=147 Identities=17% Similarity=0.219 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC--CC-----------------------------cccCCceeEeeeEEEEecCeEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEF--EK-----------------------------KYEPTIGVEVHPLDFFTNCGKI 62 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 62 (221)
++|+++|+.++|||||+.+++...- .. ......|+|.+.....+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999763211 00 0112334555555556666677
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc-cHH----
Q 027593 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAK---- 137 (221)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~~~---- 137 (221)
++.++||||++.|.......+..+|++++|+|+.....-.....+. +.......++++++||+|+..... ..+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~ 158 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLLGIRHVVLAVNKMDLVDYDEEVFENIKK 158 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence 9999999999887655556678999999999998664322222221 122223456889999999864221 111
Q ss_pred H-HHHHHhc---CceEEEeecCCCCChHH
Q 027593 138 Q-VTFHRKK---NLQYYEISAKSNYNFEK 162 (221)
Q Consensus 138 ~-~~~~~~~---~~~~~~~s~~~~~~i~~ 162 (221)
. ..+.... ..+++++|+++|.|+.+
T Consensus 159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1 1122222 35799999999999875
No 251
>PLN03127 Elongation factor Tu; Provisional
Probab=99.60 E-value=2.9e-14 Score=117.16 Aligned_cols=160 Identities=15% Similarity=0.076 Sum_probs=101.7
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcC-----CCC---------CcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG-----EFE---------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (221)
..++.++|+++|+.++|||||+++|... ... .......|+|.+.....+...+.++.++||||+..
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 4678899999999999999999996521 110 01223467777777777777778899999999987
Q ss_pred ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcccccHHHH-----HHHHh----
Q 027593 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQV-----TFHRK---- 144 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~~~~~-----~~~~~---- 144 (221)
|-.........+|++++|+|+.....-.. ...+..+.. -+.| +++++||+|+.+.....+.. ++...
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 65544445567999999999886532221 122222222 2678 47889999986422211111 11111
Q ss_pred -cCceEEEeecC---CCCC-------hHHHHHHHHHHH
Q 027593 145 -KNLQYYEISAK---SNYN-------FEKPFLYLARKL 171 (221)
Q Consensus 145 -~~~~~~~~s~~---~~~~-------i~~~~~~l~~~l 171 (221)
..++++++|+. .+.+ +..+++.|...+
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 13678888876 3444 456666665543
No 252
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.60 E-value=1.2e-14 Score=111.61 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccc----ccc---ccC
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLR----DGY---YIH 85 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~----~~~---~~~ 85 (221)
.-|+++|.|++|||||++++... .++....+.+|..+.-..+. .....|.+-|+||..+-.+.- ..| +..
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~A--kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAA--KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhc--CCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 35789999999999999985543 35566677777777655554 455679999999976543322 222 567
Q ss_pred ccEEEEEEeCCChhh---hccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHH-H-HHHHHhcCce-EEEeecCC
Q 027593 86 GQCAIIMFDVTARLT---YKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-Q-VTFHRKKNLQ-YYEISAKS 156 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~-~-~~~~~~~~~~-~~~~s~~~ 156 (221)
+..++.|+|++..+. .++......++..+. .++|.++|+||+|+.......+ . ..+....+.. .+++|+.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 889999999986553 344444555555543 5899999999999654322222 2 2333333433 22299999
Q ss_pred CCChHHHHHHHHHHHhCCC
Q 027593 157 NYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 157 ~~~i~~~~~~l~~~l~~~~ 175 (221)
+.|++.+...+.+.+...+
T Consensus 318 ~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 318 REGLDELLRALAELLEETK 336 (369)
T ss_pred ccCHHHHHHHHHHHHHHhh
Confidence 9999999999999776654
No 253
>PRK00007 elongation factor G; Reviewed
Probab=99.60 E-value=4.6e-15 Score=128.37 Aligned_cols=143 Identities=18% Similarity=0.164 Sum_probs=96.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc--CCCCC--cc------------cCCceeEeeeEEEEecCeEEEEEEEeCCCcccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~--~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (221)
...+|+|+|+.++|||||+++|+. |.... .+ ....|++.+.....+...+..+.++||||+..+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 356999999999999999999873 22111 01 124566776666666667789999999998877
Q ss_pred cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcC----ceEEE
Q 027593 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN----LQYYE 151 (221)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~----~~~~~ 151 (221)
.......+..+|++++|+|+...........|.... . .++|.++++||+|+.......-...+....+ ...++
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~-~--~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQAD-K--YKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLP 165 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHH-H--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEec
Confidence 666666788899999999988765444433333322 2 2789999999999876443222222222222 24567
Q ss_pred eecCCC
Q 027593 152 ISAKSN 157 (221)
Q Consensus 152 ~s~~~~ 157 (221)
+|+..+
T Consensus 166 isa~~~ 171 (693)
T PRK00007 166 IGAEDD 171 (693)
T ss_pred CccCCc
Confidence 777665
No 254
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.59 E-value=1.1e-13 Score=111.85 Aligned_cols=164 Identities=18% Similarity=0.242 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEe-----------------------c-CeEEEEEEEeC
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----------------------N-CGKIRFYCWDT 69 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~~~~~D~ 69 (221)
++|+++|.++||||||+|++...... ....+++|..+....+ + .....+++||+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~--~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE--IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc--ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 68999999999999999997765442 2233444433333211 1 12367899999
Q ss_pred CCccc----cccccccc---ccCccEEEEEEeCCChh----------------hhc----cHHHH---------------
Q 027593 70 AGQEK----FGGLRDGY---YIHGQCAIIMFDVTARL----------------TYK----NVPTW--------------- 107 (221)
Q Consensus 70 ~g~~~----~~~~~~~~---~~~~~~~i~v~d~~~~~----------------s~~----~~~~~--------------- 107 (221)
||... .......+ ++++|++++|+|+.... -++ ++..|
T Consensus 80 aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~ 159 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK 159 (396)
T ss_pred CCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99542 33333344 78999999999996210 000 00000
Q ss_pred --------------------------HHHHHh----------------------hcCCCCEEEEEeCCCCCcccccHHHH
Q 027593 108 --------------------------HRDLCR----------------------VCENIPIVLCGNKVDVKNRQVKAKQV 139 (221)
Q Consensus 108 --------------------------~~~~~~----------------------~~~~~p~i~v~nk~D~~~~~~~~~~~ 139 (221)
...+.. ....+|+++|+||.|.........
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~-- 237 (396)
T PRK09602 160 AQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIE-- 237 (396)
T ss_pred HhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHH--
Confidence 000000 002479999999999753221111
Q ss_pred HHHHhcCceEEEeecCCCCChHH-HHHHHHHHHhCCCCCcccc
Q 027593 140 TFHRKKNLQYYEISAKSNYNFEK-PFLYLARKLAGDPNLHFVE 181 (221)
Q Consensus 140 ~~~~~~~~~~~~~s~~~~~~i~~-~~~~l~~~l~~~~~~~~~~ 181 (221)
.+.......++.+||+.+.++.. +...+.+.+...|.++..+
T Consensus 238 ~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d 280 (396)
T PRK09602 238 RLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILG 280 (396)
T ss_pred HHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccc
Confidence 11111355789999999999999 8888888888877666433
No 255
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.58 E-value=7.2e-15 Score=105.46 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=71.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEe-cCeEEEEEEEeCCCccccccccccc---ccCccE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGY---YIHGQC 88 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~---~~~~~~ 88 (221)
.-.|+++|+.|||||+|+.+|..+...+.+..... .....+ ...+..+.++|+||+.+.+...... ...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~----n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN----NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSE----EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC----CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 35799999999999999999988855443322211 111111 1234578999999999877644443 778999
Q ss_pred EEEEEeCCC-hhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCc
Q 027593 89 AIIMFDVTA-RLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN 131 (221)
Q Consensus 89 ~i~v~d~~~-~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~ 131 (221)
+|||+|++. .....+...++..+.... ...|+++++||.|+..
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 999999874 344455555555443332 4789999999999865
No 256
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=3.2e-14 Score=106.46 Aligned_cols=170 Identities=12% Similarity=0.170 Sum_probs=112.9
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc-------ccccc
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-------FGGLR 79 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~ 79 (221)
+...++.++|+++|..|+|||||||+++.+...+-..-..+++.... ....+....+.+||+||... ++...
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~-~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~ 111 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR-LRLSYDGENLVLWDTPGLGDGKDKDAEHRQLY 111 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh-HHhhccccceEEecCCCcccchhhhHHHHHHH
Confidence 34577889999999999999999999775544332111112111111 11122347889999999665 45556
Q ss_pred cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc---------cc--HH-----HHHHHH
Q 027593 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---------VK--AK-----QVTFHR 143 (221)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~---------~~--~~-----~~~~~~ 143 (221)
..++...|.++++.++.++.--.+...|.+.+.... +.++++++|.+|..... .. .+ ......
T Consensus 112 ~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred HHHhhhccEEEEeccCCCccccCCHHHHHHHHHhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 677889999999999999876666666666554432 48999999999974321 11 11 111111
Q ss_pred ---hcCceEEEeecCCCCChHHHHHHHHHHHhCCCCCc
Q 027593 144 ---KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 144 ---~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~ 178 (221)
..-.+.+..+...+-|++.+...++.++..+.+..
T Consensus 191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~ 228 (296)
T COG3596 191 RLFQEVKPVVAVSGRLPWGLKELVRALITALPVEARSP 228 (296)
T ss_pred HHHhhcCCeEEeccccCccHHHHHHHHHHhCcccccch
Confidence 11357777888889999999999999887665543
No 257
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.57 E-value=2.4e-14 Score=119.71 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=84.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc-CCCCC-------------------cccCCceeEeeeEEEEecCeEEEEEEEeCC
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLT-GEFEK-------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 70 (221)
.+..+|+|+|++++|||||+++++. +.... ......|.++......+.+++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999763 11111 011234556666666777788999999999
Q ss_pred CcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc
Q 027593 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (221)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~ 132 (221)
|+..+.......+..+|++++|+|+++... .....+...... .+.|+++++||+|+...
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccccCC
Confidence 998887766777889999999999987421 111222222221 37899999999998643
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.56 E-value=4.9e-14 Score=122.08 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=84.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC--CCC--Ccc------------cCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFE--KKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~--~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (221)
.+..+|+|+|+.++|||||+++|+.. ... ..+ ....|++......++..++..+.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 34578999999999999999998642 110 001 12456666666666666778999999999988
Q ss_pred ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
+...+...+..+|++++|+|+...........|.. ... .++|.++++||+|+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~-~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQ-ADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHH-HHH--cCCCEEEEEECCCCCC
Confidence 77777778899999999999987643332222222 222 3789999999999864
No 259
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.56 E-value=3.3e-14 Score=122.10 Aligned_cols=151 Identities=20% Similarity=0.179 Sum_probs=96.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc-------------------------------ccCCceeEeeeEEEEec
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-------------------------------YEPTIGVEVHPLDFFTN 58 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 58 (221)
..+.++|+++|++++|||||+++++...-.-. .....|+|.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 45678999999999999999999775221000 00113444455445555
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHH
Q 027593 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK 137 (221)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~ 137 (221)
..+..+.++||||++.+.......+..+|++++|+|+.....-.....+. +.......++++++||+|+.+ .....+
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~--~~~~~~~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF--IASLLGIRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH--HHHHhCCCeEEEEEEecccccchhHHHH
Confidence 56678899999998877554455578899999999997653322221111 111123467889999999864 111111
Q ss_pred -----HHHHHHhcC---ceEEEeecCCCCChHH
Q 027593 138 -----QVTFHRKKN---LQYYEISAKSNYNFEK 162 (221)
Q Consensus 138 -----~~~~~~~~~---~~~~~~s~~~~~~i~~ 162 (221)
...+....+ .+++++|+++|.|+.+
T Consensus 179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 112223333 4689999999999874
No 260
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.56 E-value=1.3e-13 Score=105.29 Aligned_cols=153 Identities=16% Similarity=0.084 Sum_probs=106.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc-------ccccccccC
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-------GLRDGYYIH 85 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~ 85 (221)
..+|+++|.|.+|||||++++. +.. ........+|..+......+.+..+++.|+||.-... ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LT-nt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLT-NTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHh-CCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 4789999999999999999955 333 3345566777777777888889999999999955432 223456899
Q ss_pred ccEEEEEEeCCChhhh-ccHHHHHHH--------------------------------------------HHhhc-----
Q 027593 86 GQCAIIMFDVTARLTY-KNVPTWHRD--------------------------------------------LCRVC----- 115 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~-~~~~~~~~~--------------------------------------------~~~~~----- 115 (221)
+|++++|+|+...... +-+...++. +..++
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 9999999999865542 112111111 10000
Q ss_pred -----------------CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 116 -----------------ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 116 -----------------~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
.-+|.+.|.||.|+.... +...+.+.. ..+.+|+..+-|++++...|.+.+-
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e---~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE---ELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH---HHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 013889999999987522 111222222 7889999999999999999999874
No 261
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.1e-14 Score=99.04 Aligned_cols=153 Identities=19% Similarity=0.303 Sum_probs=110.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.-|++++|-.++|||||++. +....-....||...|.....+ ++..++.+|.+|+...+..|..|+..++++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHM-LKdDrl~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHM-LKDDRLGQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHH-HccccccccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 456899999999999999997 4433333444444333333333 67899999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH------HHHHhc-----------CceEEEe
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV------TFHRKK-----------NLQYYEI 152 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~------~~~~~~-----------~~~~~~~ 152 (221)
.+|+-+.+.|.+.+.-.+.+... ....|+++.+||.|........+.. ..+... .+..|.|
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 99999999998877666655443 3689999999999997644222111 111111 1346778
Q ss_pred ecCCCCChHHHHHHHHH
Q 027593 153 SAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 153 s~~~~~~i~~~~~~l~~ 169 (221)
|...+.+-.+.|.|+..
T Consensus 174 si~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEccCccceeeeehhh
Confidence 88888877776666654
No 262
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.8e-13 Score=109.99 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=106.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC---eEEEEEEEeCCCcccccccccccccCccE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
+.+=|+++|+-..|||||+..+-....... ..-|.|++.--+.+.. ....+.++||||++.|..++..-..-+|+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 446799999999999999998655444332 2334555554444432 34689999999999999888877888999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCCCcccccHHHHHH--------HHhcCceEEEeecCCCCC
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTF--------HRKKNLQYYEISAKSNYN 159 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~~ 159 (221)
+++|+++++.--.+.+. .+... ..+.|+++++||+|..+.+......++ .+.....++++||++|.|
T Consensus 82 aILVVa~dDGv~pQTiE----AI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 82 AILVVAADDGVMPQTIE----AINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEEEccCCcchhHHH----HHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 99999999873333222 22211 138999999999999864433322211 122236799999999999
Q ss_pred hHHHHHHHHH
Q 027593 160 FEKPFLYLAR 169 (221)
Q Consensus 160 i~~~~~~l~~ 169 (221)
+.+++..+.-
T Consensus 158 i~eLL~~ill 167 (509)
T COG0532 158 IDELLELILL 167 (509)
T ss_pred HHHHHHHHHH
Confidence 9998887765
No 263
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.4e-13 Score=108.44 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=106.5
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcC--CCC---------------------------CcccCCceeEeeeEEEEecC
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG--EFE---------------------------KKYEPTIGVEVHPLDFFTNC 59 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 59 (221)
...+.++++++|+..+|||||+-+|+.. ... -......|.|.......+.-
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 3678999999999999999999997751 111 11223456777777767766
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh---hh--ccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-cc
Q 027593 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQ 133 (221)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~ 133 (221)
....++++|+||+..|-...-.-..++|+.++|+|+++.+ +| ....+....+.....-..+|+++||+|+.. ++
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 7788999999998877766666688999999999999873 22 222222223333334566789999999974 33
Q ss_pred ccHHHH-----HHHHhc-----CceEEEeecCCCCChHH
Q 027593 134 VKAKQV-----TFHRKK-----NLQYYEISAKSNYNFEK 162 (221)
Q Consensus 134 ~~~~~~-----~~~~~~-----~~~~~~~s~~~~~~i~~ 162 (221)
.+.++. .+.+.. ..+|+++|+..|.|+.+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 332222 223333 36799999999999865
No 264
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.53 E-value=1.4e-13 Score=113.00 Aligned_cols=162 Identities=15% Similarity=0.140 Sum_probs=101.4
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCceeEeeeEEE-----------------EecC-----------
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDF-----------------FTNC----------- 59 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~----------- 59 (221)
..++.++|+++|+-..|||||+++|..-.... ......|+|...-.. ....
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 34678999999999999999999966422211 011112222111000 0000
Q ss_pred -----eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593 60 -----GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (221)
Q Consensus 60 -----~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~ 133 (221)
-...+.++|+||++.|-......+..+|++++|+|+.... .......+ .+.......++++++||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl--~i~~~lgi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL--AAVEIMKLKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH--HHHHHcCCCcEEEEEecccccCHH
Confidence 0247899999999888666666677899999999999742 21111111 122222345789999999987532
Q ss_pred ccHHHH----HHHH---hcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 134 VKAKQV----TFHR---KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 134 ~~~~~~----~~~~---~~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
...+.. .+.. ....+++++|+++|.|++.+++.|...+.
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 222211 1111 13678999999999999999998887543
No 265
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=2.4e-13 Score=108.55 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=118.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC--C-----------CcccCCceeEeeeEEEEe-----cCeEEEEEEEeCCCcccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEF--E-----------KKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~~ 75 (221)
-+.+++-+-.-|||||..+++...- . -......|+|.....+.. ++.++.++++||||+..|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 4578899999999999999775221 0 122345677877776654 356789999999999999
Q ss_pred cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEEEe
Q 027593 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI 152 (221)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~~~ 152 (221)
.......+..|.++++++|++..---+.+.+....+. .+.-++.|+||.|++......-..+...-.++ ..+.+
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle---~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~ 166 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLV 166 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH---cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeE
Confidence 9988889999999999999998754444444333333 37899999999999876655444444444444 57889
Q ss_pred ecCCCCChHHHHHHHHHHHh
Q 027593 153 SAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 153 s~~~~~~i~~~~~~l~~~l~ 172 (221)
||++|.|+++++..|+..+.
T Consensus 167 SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 167 SAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred ecccCCCHHHHHHHHHhhCC
Confidence 99999999999999999764
No 266
>PRK12740 elongation factor G; Reviewed
Probab=99.47 E-value=5.3e-13 Score=115.65 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=77.2
Q ss_pred EcCCCCcHHHHHHHHhcCCCC--C--c------------ccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccc
Q 027593 19 VGDGGTGKTTFVKRHLTGEFE--K--K------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY 82 (221)
Q Consensus 19 ~G~~g~GKStli~~~~~~~~~--~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 82 (221)
+|+.|+|||||+++|+...-. . . .....|.+.......+...+..+.+|||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999997542110 0 0 01124455555555555567899999999998777777778
Q ss_pred ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
+..+|++++|+|++..........|.. ... .+.|+++++||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~-~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQ-AEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHH-HHH--cCCCEEEEEECCCCCC
Confidence 899999999999988755444333322 222 3789999999999753
No 267
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.7e-13 Score=101.83 Aligned_cols=61 Identities=25% Similarity=0.337 Sum_probs=52.1
Q ss_pred hcCceEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593 144 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 144 ~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
......-.+..++|...+++| |+|+|..+|+++++|||..+ +|...+..+.+.+++++.+.
T Consensus 129 m~~~~~r~i~~LSGGQ~QRV~--lARAL~~~p~lllLDEP~~g-----vD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 129 MEDLRDRQIGELSGGQKQRVL--LARALAQNPDLLLLDEPFTG-----VDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred chhhhCCcccccCcHHHHHHH--HHHHhccCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence 334445557778888878766 99999999999999999999 99999999999999998873
No 268
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.45 E-value=2.5e-13 Score=118.02 Aligned_cols=118 Identities=22% Similarity=0.159 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCC-----------Cccc---CCceeEeeeE----EEEecCeEEEEEEEeCCCc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-----------KKYE---PTIGVEVHPL----DFFTNCGKIRFYCWDTAGQ 72 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~-----------~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~D~~g~ 72 (221)
.+..+|+++|+.++|||||+++|+...-. -.+. ...+.|.... ...+.+.+..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34579999999999999999998752100 0111 1123333222 2235677899999999999
Q ss_pred ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
..+.......+..+|++++|+|+...........|..... .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~---~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK---ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH---cCCCEEEEEEChhccc
Confidence 9888777788999999999999987644333333332221 2678899999999854
No 269
>PRK09866 hypothetical protein; Provisional
Probab=99.45 E-value=6.5e-12 Score=104.79 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=68.7
Q ss_pred EEEEEEeCCCccccc-c----cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc-c
Q 027593 62 IRFYCWDTAGQEKFG-G----LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K 135 (221)
Q Consensus 62 ~~~~~~D~~g~~~~~-~----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~ 135 (221)
..+.++||||..... . .....+..+|++++|+|+....+..+. .....+.......|+++|+||+|..++.. .
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 457899999976432 1 233458899999999999875444332 23333433322359999999999864222 1
Q ss_pred HH-HHHHHH----hc---CceEEEeecCCCCChHHHHHHHHH
Q 027593 136 AK-QVTFHR----KK---NLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 136 ~~-~~~~~~----~~---~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
.+ ...... .. ...+|++||+.|.|++.++..|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 11 112211 11 236899999999999997776665
No 270
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.44 E-value=3.4e-13 Score=100.71 Aligned_cols=164 Identities=17% Similarity=0.261 Sum_probs=91.7
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE------E--E------------------------
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL------D--F------------------------ 55 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~------~--~------------------------ 55 (221)
....+...|+++|+.||||||++.++.. +......+..-+..++. . +
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~-hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNS-HLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHH-HHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 3455678999999999999999999543 33222221111111110 0 0
Q ss_pred --------Ee---------cCeEEEEEEEeCCCcccc------cccccccccCc--cEEEEEEeCC---ChhhhccHHHH
Q 027593 56 --------FT---------NCGKIRFYCWDTAGQEKF------GGLRDGYYIHG--QCAIIMFDVT---ARLTYKNVPTW 107 (221)
Q Consensus 56 --------~~---------~~~~~~~~~~D~~g~~~~------~~~~~~~~~~~--~~~i~v~d~~---~~~s~~~~~~~ 107 (221)
.+ ......+.++|||||.+. .......+... -+++++.|.. ++..|..-..+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 00 123355889999998752 11112223333 3444555533 22233222222
Q ss_pred HHHHHhhcCCCCEEEEEeCCCCCcccccHHHH------HHHHh----------------------cCceEEEeecCCCCC
Q 027593 108 HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV------TFHRK----------------------KNLQYYEISAKSNYN 159 (221)
Q Consensus 108 ~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~------~~~~~----------------------~~~~~~~~s~~~~~~ 159 (221)
.-.+.. ....|+|++.||+|+.+.....++. +.+.. .++..+-+|+.+|.|
T Consensus 173 AcSily-ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G 251 (366)
T KOG1532|consen 173 ACSILY-KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG 251 (366)
T ss_pred HHHHHH-hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence 211111 1379999999999998755443221 11111 135578899999999
Q ss_pred hHHHHHHHHHHHhC
Q 027593 160 FEKPFLYLARKLAG 173 (221)
Q Consensus 160 i~~~~~~l~~~l~~ 173 (221)
.+++|..+...+-.
T Consensus 252 ~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 252 FDDFFTAVDESVDE 265 (366)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 271
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3e-12 Score=103.93 Aligned_cols=151 Identities=17% Similarity=0.141 Sum_probs=104.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE--EEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
+..=|-|+|+-.-|||||+..|-...... ...-|+|++.- .++.. .+-.++|.||||+..|...+..-..-.|++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA--~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAA--GEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceeh--hhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 45678899999999999999855433322 22334555443 34444 347899999999999988888778888999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCCCcccccHHHHHH------HHhc--CceEEEeecCCCCCh
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTF------HRKK--NLQYYEISAKSNYNF 160 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~~~~~~~~~~~------~~~~--~~~~~~~s~~~~~~i 160 (221)
++|+.+.|.--.+ ..+.+... ..+.|+++++||+|.+......-..++ ...+ .+..+++|+++|.|+
T Consensus 229 VLVVAadDGVmpQ----T~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 229 VLVVAADDGVMPQ----TLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEEEccCCccHh----HHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 9999999863222 22233222 248999999999998764332211121 2222 367899999999999
Q ss_pred HHHHHHHHH
Q 027593 161 EKPFLYLAR 169 (221)
Q Consensus 161 ~~~~~~l~~ 169 (221)
+.+-+++.-
T Consensus 305 ~~L~eaill 313 (683)
T KOG1145|consen 305 DLLEEAILL 313 (683)
T ss_pred HHHHHHHHH
Confidence 887766654
No 272
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.42 E-value=2.3e-12 Score=98.16 Aligned_cols=119 Identities=8% Similarity=0.023 Sum_probs=71.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc---c-------c
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---L-------R 79 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~-------~ 79 (221)
....++|+|+|.+|+|||||+|++++... .......+.+...........+..+.+|||||...... . .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~-~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERK-AATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 34579999999999999999999665433 22222333344443333333457899999999664421 1 1
Q ss_pred ccccc--CccEEEEEEeCCChhhhccH-HHHHHHHHhhcC---CCCEEEEEeCCCCC
Q 027593 80 DGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (221)
Q Consensus 80 ~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~i~v~nk~D~~ 130 (221)
..++. ..+++++|..++... +... ...+..+....+ -.++++|.||+|..
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 11222 467777776655432 2222 233444443332 25799999999974
No 273
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.42 E-value=5.3e-13 Score=87.89 Aligned_cols=136 Identities=21% Similarity=0.128 Sum_probs=87.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc----cccccCccEEE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI 90 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~~i 90 (221)
|++++|..|+|||||++. +.|...- +..+..+++... -.+||||.-.....+ ......++.++
T Consensus 3 ri~~vG~~gcGKTtL~q~-L~G~~~l-ykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQS-LYGNDTL-YKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHH-hhcchhh-hcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999 4443311 122222222111 246899944322222 22356789999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcC-ceEEEeecCCCCChHHHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
+|-.++++++.-.-.. .. ...+|+|-+++|.|+...........+...-| .++|.+|+.++.|+++++..|..
T Consensus 70 ~v~~and~~s~f~p~f-----~~-~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 70 YVHAANDPESRFPPGF-----LD-IGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred eeecccCccccCCccc-----cc-ccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 9999999866432211 01 12567999999999985333333334444545 47999999999999999887765
No 274
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.42 E-value=1.3e-12 Score=94.70 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=47.3
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP 213 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (221)
.+.++|. ++...+|+|+|..+|++.+.|||++. +||+-..+..+.+++++.+..+
T Consensus 134 P~qLSGG--QqQRVAIARALaM~P~vmLFDEPTSA-----LDPElv~EVL~vm~~LA~eGmT 188 (240)
T COG1126 134 PAQLSGG--QQQRVAIARALAMDPKVMLFDEPTSA-----LDPELVGEVLDVMKDLAEEGMT 188 (240)
T ss_pred ccccCcH--HHHHHHHHHHHcCCCCEEeecCCccc-----CCHHHHHHHHHHHHHHHHcCCe
Confidence 3455544 45669999999999999999999999 9999999999999999887653
No 275
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.6e-12 Score=93.63 Aligned_cols=112 Identities=17% Similarity=0.263 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccccc---CccEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI---HGQCAI 90 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~~~~i 90 (221)
-.|.++|+.+||||+|+-++..+.+.+.+ ++..+.......+...++++|.||+.+.+.....++. ++.+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-----tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV-----TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCee-----eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 57999999999999999998877544322 2333444444445556899999999988776666666 788999
Q ss_pred EEEeCCC-hhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCC
Q 027593 91 IMFDVTA-RLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVK 130 (221)
Q Consensus 91 ~v~d~~~-~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~ 130 (221)
||+|+.. .....++..++..+...+ ...|+++++||.|+-
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 9999653 333344444444443332 467899999999973
No 276
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1e-12 Score=112.21 Aligned_cols=135 Identities=18% Similarity=0.118 Sum_probs=102.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCC--CC--c------------ccCCceeEeeeEEEEecCe-EEEEEEEeCCCc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK--K------------YEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQ 72 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~--~~--~------------~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~ 72 (221)
....-+|+++|+.++|||||..+++...- .. . .....|+|......++.+. +..++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 44567999999999999999999775221 11 1 1123567777777777667 499999999999
Q ss_pred ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc
Q 027593 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~ 147 (221)
-+|.......++-+|++++|+|+...--...-..|++.... +.|.++++||+|........-..+....++.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDRLGADFYLVVEQLKERLGA 158 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence 99999999999999999999999988777767778777655 8999999999998765544433344444333
No 277
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.40 E-value=3.2e-12 Score=98.91 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=71.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc-------ccc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------DGY 82 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~ 82 (221)
..+.++|+++|.+|+||||++|++++.. ........+.+...........+..+.++||||........ ..+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~-v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGER-IATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCC-cccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 4678999999999999999999977543 22222232323333222222346789999999976532211 111
Q ss_pred c--cCccEEEEEEeCCChhhhccH-HHHHHHHHhhcC---CCCEEEEEeCCCCC
Q 027593 83 Y--IHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (221)
Q Consensus 83 ~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~i~v~nk~D~~ 130 (221)
+ ...|++++|..++... +... ...+..+...++ -.++|+++|++|..
T Consensus 114 l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 1 2578999996654322 2222 233333333322 35789999999965
No 278
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.37 E-value=1.4e-11 Score=92.07 Aligned_cols=161 Identities=12% Similarity=0.088 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc-----------cc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD-----------GY 82 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-----------~~ 82 (221)
++|+|+|.+||||||++|.+++...........+.+...........+..+.++||||......... ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999877665443322333343333333333457889999999543221111 11
Q ss_pred ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcC---CCCEEEEEeCCCCCcccccH---------HHHHHHHhcCceEE
Q 027593 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQVKA---------KQVTFHRKKNLQYY 150 (221)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~i~v~nk~D~~~~~~~~---------~~~~~~~~~~~~~~ 150 (221)
....+++++|+.+. +.+-.+ ...+..+....+ -.-++|++|..|........ ....+...++-.++
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 34579999999988 323222 233333333322 24578888888865432211 12244555666677
Q ss_pred EeecC------CCCChHHHHHHHHHHHhCCCC
Q 027593 151 EISAK------SNYNFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 151 ~~s~~------~~~~i~~~~~~l~~~l~~~~~ 176 (221)
..+.. ....+.+++..|-..+..+..
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 66655 345678888888887776653
No 279
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.36 E-value=1.9e-12 Score=114.19 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=83.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCC--C------------cccCCceeEeeeEEEEec----------------C
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--K------------KYEPTIGVEVHPLDFFTN----------------C 59 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~----------------~ 59 (221)
.....+|+|+|+.++|||||+.+|+...-. . ......|.+.......+. .
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345569999999999999999998753321 0 001122333332222221 2
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~ 130 (221)
.+..+.++||||+.+|.......++.+|++++|+|+...........|...... ++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~---~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC---CCCEEEEEECCccc
Confidence 367889999999999988888888999999999999987655554555544333 78999999999986
No 280
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.35 E-value=1.6e-11 Score=97.12 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=55.0
Q ss_pred cCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCh----------hhhccHHHHHHHHHhh--cCCCCEEEEEe
Q 027593 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGN 125 (221)
Q Consensus 58 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~i~v~n 125 (221)
..++..+.+||++|+...+..|..++.+++++++|+|+++. ..+.+.......+... ..+.|+++++|
T Consensus 157 ~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~N 236 (317)
T cd00066 157 TIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLN 236 (317)
T ss_pred EecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEcc
Confidence 34568899999999999999999999999999999999874 2233222233333222 25789999999
Q ss_pred CCCCC
Q 027593 126 KVDVK 130 (221)
Q Consensus 126 k~D~~ 130 (221)
|.|+-
T Consensus 237 K~D~f 241 (317)
T cd00066 237 KKDLF 241 (317)
T ss_pred ChHHH
Confidence 99963
No 281
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.35 E-value=2.7e-12 Score=103.18 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=110.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc----cccccc-----
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGLRDG----- 81 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~~~~----- 81 (221)
.+.-+++|+|-|++|||||+|.+. .......+...+|.......++....+|+++||||.-.. +....+
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vt--radvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVT--RADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhccccc--ccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 445789999999999999999643 334556677777777777788888899999999994321 111111
Q ss_pred cccCccEEEEEEeCCCh--hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHH---HHHH-HHhcCceEEEeec
Q 027593 82 YYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAK---QVTF-HRKKNLQYYEISA 154 (221)
Q Consensus 82 ~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~---~~~~-~~~~~~~~~~~s~ 154 (221)
..+--.+++++.|++.. .|......+...+.....++|.|+|+||+|..... ...+ .++. ....+++++.+|+
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 11222467888888754 44455556666777777899999999999986533 2332 2232 3334589999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q 027593 155 KSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 155 ~~~~~i~~~~~~l~~~l~ 172 (221)
....|+..+....+.+++
T Consensus 324 ~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 324 VQEEGVMDVRTTACEALL 341 (620)
T ss_pred cchhceeeHHHHHHHHHH
Confidence 999999776665555443
No 282
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.33 E-value=1.8e-12 Score=97.85 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=46.4
Q ss_pred EEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 149 ~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.-.++..+| .+..+.+|++++.+++++.++|||++. +|...+.+.++.++++..+
T Consensus 133 ~r~~~~LSG--GerQrv~iArALaQ~~~iLLLDEPTs~-----LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 133 DRPVDELSG--GERQRVLIARALAQETPILLLDEPTSH-----LDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred cCcccccCh--hHHHHHHHHHHHhcCCCEEEeCCCccc-----cCHHHHHHHHHHHHHHHHh
Confidence 334566666 455568899999999999999999999 9999999999999998743
No 283
>PTZ00416 elongation factor 2; Provisional
Probab=99.33 E-value=4.2e-12 Score=111.88 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=79.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCC--CCc------------ccCCceeEeeeE--EEEec--------CeEEEEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK------------YEPTIGVEVHPL--DFFTN--------CGKIRFYCW 67 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~--~~~------------~~~~~~~~~~~~--~~~~~--------~~~~~~~~~ 67 (221)
...+|+++|+.++|||||+++|+...- ... .....|++.... ...+. +.+..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 345999999999999999999875221 100 011123333322 22222 125779999
Q ss_pred eCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~ 130 (221)
||||+.++.......++.+|++++|+|+...........|..... .+.|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH---cCCCEEEEEEChhhh
Confidence 999999887777778899999999999998755444444433322 268999999999986
No 284
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.33 E-value=4.9e-11 Score=95.31 Aligned_cols=156 Identities=17% Similarity=0.238 Sum_probs=112.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc--CCCC------------CcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLT--GEFE------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 78 (221)
--+|+++-+-.-|||||+..++. |.|. .......|+|.-.+...+.+++.++.++||||+-.|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 35799999999999999999775 2221 122345688888888888889999999999999999999
Q ss_pred ccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc---HHHHHHH-------HhcCce
Q 027593 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFH-------RKKNLQ 148 (221)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~---~~~~~~~-------~~~~~~ 148 (221)
....+...|++++++|+.+..-.+.-=.....+. .+.+-|+|+||.|....... .+...+. .++.+|
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 9999999999999999997643222112222222 26777889999999764322 2222222 345688
Q ss_pred EEEeecCCCC----------ChHHHHHHHHHHH
Q 027593 149 YYEISAKSNY----------NFEKPFLYLARKL 171 (221)
Q Consensus 149 ~~~~s~~~~~----------~i~~~~~~l~~~l 171 (221)
.++.|+..|. ++.-+|+.|...+
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 9998887653 4567777777754
No 285
>PRK13768 GTPase; Provisional
Probab=99.33 E-value=9.3e-12 Score=95.35 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=69.9
Q ss_pred EEEEEeCCCccccc---ccccccc---cC--ccEEEEEEeCCChhhhccHH--HHHHHHHhhcCCCCEEEEEeCCCCCcc
Q 027593 63 RFYCWDTAGQEKFG---GLRDGYY---IH--GQCAIIMFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNKVDVKNR 132 (221)
Q Consensus 63 ~~~~~D~~g~~~~~---~~~~~~~---~~--~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~i~v~nk~D~~~~ 132 (221)
.+.+||+||+.+.. ..+..++ .. .+++++++|++......+.. .|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 68999999976532 2222222 22 78999999997644332222 222211112237999999999998653
Q ss_pred cccHHHHH----------------------------HHHhcC--ceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 133 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 133 ~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
........ .....+ .+++.+|++++.|++++..+|.+.+..
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 32221111 111223 578999999999999999999987754
No 286
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.31 E-value=4.6e-11 Score=90.05 Aligned_cols=140 Identities=13% Similarity=0.195 Sum_probs=82.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+...|+++|++|+|||||++.++............|. ... +...+.++.++||||.. .........+|.+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH---HHHHHHHHhcCEE
Confidence 566788999999999999999986643222211112221 111 22356788999999853 1222335788999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhcCCCCE-EEEEeCCCCCcccccHH----HH-H-HHH--hcCceEEEeecCCCCCh
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVKAK----QV-T-FHR--KKNLQYYEISAKSNYNF 160 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-i~v~nk~D~~~~~~~~~----~~-~-~~~--~~~~~~~~~s~~~~~~i 160 (221)
++++|++........ .....+.. .+.|. ++++||.|+.+.....+ .+ . +.. ..+.+++.+|+++...+
T Consensus 108 llviDa~~~~~~~~~-~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 108 LLLIDASFGFEMETF-EFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEEEecCcCCCHHHH-HHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 999998765432221 22222222 25675 45999999853221111 11 1 111 12468999999886543
No 287
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=5.9e-12 Score=91.86 Aligned_cols=161 Identities=18% Similarity=0.283 Sum_probs=104.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccc-----cccccccccCc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKF-----GGLRDGYYIHG 86 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 86 (221)
+-||+++|.+|+|||++=.. .+..+...-....|.|.+.-...+. -++..+.+||++|++.+ .......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsi-iF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSI-IFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchh-hhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 35899999999999997665 4333333333444544444433332 25688999999998843 33556779999
Q ss_pred cEEEEEEeCCChhhhccHHHH---HHHHHhhcCCCCEEEEEeCCCCCcccccHH--------HHHHHHhcCceEEEeecC
Q 027593 87 QCAIIMFDVTARLTYKNVPTW---HRDLCRVCENIPIVLCGNKVDVKNRQVKAK--------QVTFHRKKNLQYYEISAK 155 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~--------~~~~~~~~~~~~~~~s~~ 155 (221)
+++++|||+...+--.++..+ ++.+.+.++...+.+..+|+|+.....+.. .......+++.++++|..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 999999999987655555443 455566667777888899999865322221 122334456778887766
Q ss_pred CCCChHHHHHHHHHHHhCCC
Q 027593 156 SNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 156 ~~~~i~~~~~~l~~~l~~~~ 175 (221)
+ +..-+++..+...+..++
T Consensus 163 D-etl~KAWS~iv~~lipn~ 181 (295)
T KOG3886|consen 163 D-ETLYKAWSSIVYNLIPNV 181 (295)
T ss_pred h-HHHHHHHHHHHHhhCCCh
Confidence 4 444555666666665544
No 288
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.31 E-value=2.2e-11 Score=97.01 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=54.5
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCh----------hhhccHHHHHHHHHhh--cCCCCEEEEEeC
Q 027593 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNK 126 (221)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~i~v~nk 126 (221)
.++..+.+||++|+...+..|..++.+++++++|+|+++- ..+.+....+..+... ..+.|+++++||
T Consensus 181 ~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK 260 (342)
T smart00275 181 VKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNK 260 (342)
T ss_pred ECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEec
Confidence 3557789999999999999999999999999999999963 2233333333333222 257899999999
Q ss_pred CCCC
Q 027593 127 VDVK 130 (221)
Q Consensus 127 ~D~~ 130 (221)
.|+-
T Consensus 261 ~D~~ 264 (342)
T smart00275 261 IDLF 264 (342)
T ss_pred HHhH
Confidence 9973
No 289
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=1.9e-12 Score=95.10 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=50.0
Q ss_pred CceEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 146 NLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 146 ~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
...+..++.++|..-++ .+|+|+|.++|++.+.|||.+. +|+...+..++.++++..+
T Consensus 139 ~~A~qra~~LSGGQQQR--VaIARaL~Q~pkiILADEPvas-----LDp~~a~~Vm~~l~~in~~ 196 (258)
T COG3638 139 DKAYQRASTLSGGQQQR--VAIARALVQQPKIILADEPVAS-----LDPESAKKVMDILKDINQE 196 (258)
T ss_pred HHHHHHhccCCcchhHH--HHHHHHHhcCCCEEecCCcccc-----cChhhHHHHHHHHHHHHHH
Confidence 34567788888777555 8999999999999999999999 9999999999999988653
No 290
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.30 E-value=7e-11 Score=90.52 Aligned_cols=158 Identities=19% Similarity=0.300 Sum_probs=107.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec--CeEEEEEEEeCCCcccccccccccccC---c-
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIH---G- 86 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~---~- 86 (221)
.=+|+|+|.+|+|||||+.+ +.|.. .+.+..|..|....+.-. +...++.+|-.-|..--..+....+.. +
T Consensus 52 gk~VlvlGdn~sGKtsLi~k-lqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISK-LQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHH-hhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 45799999999999999999 55543 334455666666555432 334678889887755333333322222 1
Q ss_pred cEEEEEEeCCChhhh-ccHHHHHHHHHhhcC-------------------------------------------------
Q 027593 87 QCAIIMFDVTARLTY-KNVPTWHRDLCRVCE------------------------------------------------- 116 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------------------------- 116 (221)
-.+|++.+++++... +.+..|...+.++.+
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 468889999998544 555566554443321
Q ss_pred -------------CCCEEEEEeCCCCC----c-ccccH--------HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593 117 -------------NIPIVLCGNKVDVK----N-RQVKA--------KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 117 -------------~~p~i~v~nk~D~~----~-~~~~~--------~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
++|+++|++|||.. . ...+. ....+|..++...+++|.+...|++.+...|++.
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 11899999999972 1 12221 2347888999999999999999999999999998
Q ss_pred HhC
Q 027593 171 LAG 173 (221)
Q Consensus 171 l~~ 173 (221)
+..
T Consensus 289 ~yG 291 (473)
T KOG3905|consen 289 SYG 291 (473)
T ss_pred hcC
Confidence 765
No 291
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=8.6e-11 Score=96.22 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=110.2
Q ss_pred CCCccCCceEEEEEcCCCCcHHHHHHHHhc--------------------CCCC---------CcccCCceeEeeeEEEE
Q 027593 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLT--------------------GEFE---------KKYEPTIGVEVHPLDFF 56 (221)
Q Consensus 6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~--------------------~~~~---------~~~~~~~~~~~~~~~~~ 56 (221)
.+..+...++++++|+..+|||||+.+++. |+.. .......|++.......
T Consensus 170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~ 249 (603)
T KOG0458|consen 170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW 249 (603)
T ss_pred cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence 455677899999999999999999999775 1111 12234567777777777
Q ss_pred ecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh---hhccH--HHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 57 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 57 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
++-....+.++|.||+..|....-.-...+|..++|+|++... +|+.. .+-...+.+...-.-+|+++||+|+.+
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS 329 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC
Confidence 7777889999999998888777777778899999999998542 33311 122223333334567889999999864
Q ss_pred -ccccHHHH-----HHH-Hhc-----CceEEEeecCCCCChHH
Q 027593 132 -RQVKAKQV-----TFH-RKK-----NLQYYEISAKSNYNFEK 162 (221)
Q Consensus 132 -~~~~~~~~-----~~~-~~~-----~~~~~~~s~~~~~~i~~ 162 (221)
.+.+.+.+ .+. ... .+.|++||..+|+|+-.
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 44444333 222 222 35799999999999854
No 292
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.29 E-value=4.8e-11 Score=92.34 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=104.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCC-------------------------------cccCCceeEeeeEEEEec
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-------------------------------KYEPTIGVEVHPLDFFTN 58 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 58 (221)
.+..+|.+-+|.-.=||||||-+++.....- ......|+|++..-..+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 3557899999999999999999988633210 011234566666555555
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-c-----
Q 027593 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-R----- 132 (221)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~----- 132 (221)
-....|.+-||||++.|...+..-...+|++|+++|+... .....+-...+.....-+-+++++||+|+.+ .
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHH
Confidence 6678899999999999988777778899999999999644 2121222222333334456788889999976 2
Q ss_pred cccHHHHHHHHhcCc---eEEEeecCCCCChH
Q 027593 133 QVKAKQVTFHRKKNL---QYYEISAKSNYNFE 161 (221)
Q Consensus 133 ~~~~~~~~~~~~~~~---~~~~~s~~~~~~i~ 161 (221)
++..+...++..++. .++++||..|.|+-
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 223344567777764 69999999999974
No 293
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.28 E-value=1.1e-10 Score=86.21 Aligned_cols=101 Identities=10% Similarity=0.067 Sum_probs=61.7
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHH-H
Q 027593 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQ-V 139 (221)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~-~ 139 (221)
....++++.|........ ..-++.++.|+|+.+...... .+...+ ...-++++||+|+.+. ....+. .
T Consensus 92 ~D~iiIEt~G~~l~~~~~---~~l~~~~i~vvD~~~~~~~~~--~~~~qi-----~~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS---PELADLTIFVIDVAAGDKIPR--KGGPGI-----TRSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CCEEEEECCCCCcccccc---hhhhCcEEEEEEcchhhhhhh--hhHhHh-----hhccEEEEEhhhccccccccHHHHH
Confidence 455677777742222221 112577999999987655321 111111 2344899999999742 111111 1
Q ss_pred HHHH--hcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 140 TFHR--KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 140 ~~~~--~~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
+... ..+.+++++|+++|.|++++|++|.+.+.
T Consensus 162 ~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 162 RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 2222 34689999999999999999999997654
No 294
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.27 E-value=4.7e-12 Score=93.56 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=94.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
-=-++++||+|+|||||+|. +.|.+. |+.| .+.+.--|+.|...+........+..+..-++
T Consensus 30 Gei~~LIGPNGAGKTTlfNl-itG~~~----P~~G-------------~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 30 GEIVGLIGPNGAGKTTLFNL-ITGFYK----PSSG-------------TVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CeEEEEECCCCCCceeeeee-eccccc----CCCc-------------eEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 34689999999999999996 555443 3444 33333346666555444444444444544444
Q ss_pred EeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCC-CcccccHHHHHHHHhcCce-EEEeecCCCCChHHHHHHHHHH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~-~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
-+++..+. +..-.... ......+....-. ..+....+...+.+..++. ....-|.+-..-++-..+|+++
T Consensus 92 ~~lTVlEN---v~va~~~~-----~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArA 163 (250)
T COG0411 92 PGLTVLEN---VAVGAHAR-----LGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARA 163 (250)
T ss_pred CCCcHHHH---HHHHhhhh-----hhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHH
Confidence 44443322 21110000 0000000000000 1112222333444444442 2223333333445566889999
Q ss_pred HhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 171 LAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 171 l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
++.+|+++++|||.++ +.+++..+..+.+++++..
T Consensus 164 La~~P~lLLLDEPaAG-----ln~~e~~~l~~~i~~i~~~ 198 (250)
T COG0411 164 LATQPKLLLLDEPAAG-----LNPEETEELAELIRELRDR 198 (250)
T ss_pred HhcCCCEEEecCccCC-----CCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999 9999999999999999864
No 295
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.26 E-value=7.1e-12 Score=85.55 Aligned_cols=113 Identities=24% Similarity=0.277 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccc-CCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (221)
+||+++|..|+|||+|+.++..+.+...+. ++.+ +......+.+.++.++.|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999987666543222 2222 222334457788999999
Q ss_pred EeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 161 (221)
++..+..++..+ |...+.... .+.|.++++||.|+.... . ........++++|++++.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~-~-----~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER-Q-----VATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC-c-----CCHHHHHHHHHHhCCCcchhh
Confidence 999999998765 666554433 367889999999984322 1 111222345667888888874
No 296
>PTZ00258 GTP-binding protein; Provisional
Probab=99.26 E-value=1.8e-10 Score=92.49 Aligned_cols=84 Identities=17% Similarity=-0.047 Sum_probs=59.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-----------------EEEEEEEeCCCcc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-----------------KIRFYCWDTAGQE 73 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~D~~g~~ 73 (221)
...++|+++|.||||||||+|++. +.. ....+.+++|..+....+... ...+.++||||..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt-~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALC-KQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHh-cCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 557899999999999999999964 333 355556777777666554322 2358999999965
Q ss_pred ccccc-------ccccccCccEEEEEEeCC
Q 027593 74 KFGGL-------RDGYYIHGQCAIIMFDVT 96 (221)
Q Consensus 74 ~~~~~-------~~~~~~~~~~~i~v~d~~ 96 (221)
..... ....++.+|++++|+|+.
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 43221 122367899999999984
No 297
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.25 E-value=4.4e-10 Score=92.17 Aligned_cols=164 Identities=15% Similarity=0.184 Sum_probs=117.1
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
...+-+.+.++|+.++|||.+++.++++.+...+..+....+......+.+..-.+.+.|.+-. ........- ..+|.
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 4667899999999999999999999998887755555555555555666677777778787654 222222222 67899
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc--ccHHHHHHHHhcCce-EEEeecCCCCChHHHHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFL 165 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~--~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~ 165 (221)
++++||.+++.+|..+....+..... ...|++.|++|+|+.... .....-+++..++++ .+.+|.+.... ..+|.
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~ 576 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFI 576 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHH
Confidence 99999999999998776544433322 689999999999997643 223336788888873 56666665333 78888
Q ss_pred HHHHHHhCCCCC
Q 027593 166 YLARKLAGDPNL 177 (221)
Q Consensus 166 ~l~~~l~~~~~~ 177 (221)
.|+.+. ..|..
T Consensus 577 kL~~~A-~~Ph~ 587 (625)
T KOG1707|consen 577 KLATMA-QYPHI 587 (625)
T ss_pred HHHHhh-hCCCc
Confidence 888854 45553
No 298
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.23 E-value=2.7e-11 Score=105.72 Aligned_cols=116 Identities=22% Similarity=0.208 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCC--CCcc------------cCCceeEeeeEEE----EecCeEEEEEEEeCCCcc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKY------------EPTIGVEVHPLDF----FTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~--~~~~------------~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~ 73 (221)
+.-+|+++|+.++|||||+.+++...- .... ....|++...... ...+.+..+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 345799999999999999999875221 1000 0112233332222 223456889999999999
Q ss_pred cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~ 130 (221)
++.......+..+|++++|+|+...........|...... +.|.++++||+|..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc---CCCeEEEEECchhh
Confidence 8877777788999999999998876444433444432222 56889999999975
No 299
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.22 E-value=1.6e-10 Score=91.08 Aligned_cols=102 Identities=11% Similarity=0.025 Sum_probs=63.8
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH---
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--- 137 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~--- 137 (221)
+..+.++||+|...... .....+|.++++.+.......... ...+. ....++|+||+|+........
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~---k~gi~----E~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGI---KKGIM----ELADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHH---Hhhhh----hhhheEEeehhcccchhHHHHHHH
Confidence 46789999999663222 246679999999663333332221 11111 233489999999865332111
Q ss_pred HHH-HHHh-------cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 138 QVT-FHRK-------KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 138 ~~~-~~~~-------~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
... .... ...+++.+|++++.|+++++..|.+.+.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 111 1111 1257999999999999999999998765
No 300
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.22 E-value=1.8e-10 Score=102.31 Aligned_cols=100 Identities=20% Similarity=0.276 Sum_probs=69.2
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEeCCCh---hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc--c---
Q 027593 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--K--- 135 (221)
Q Consensus 64 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~--~--- 135 (221)
+.+|||||++.+...+...+..+|++++|+|+++. .++..+. .+.. .+.|+++++||+|+..... .
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~--~~iPiIVViNKiDL~~~~~~~~~~~ 601 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ--YKTPFVVAANKIDLIPGWNISEDEP 601 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH--cCCCEEEEEECCCCccccccccchh
Confidence 89999999998887777777889999999999873 3333222 2222 2689999999999853110 0
Q ss_pred ---------HHHH-HH----------HH---------------hcCceEEEeecCCCCChHHHHHHHHH
Q 027593 136 ---------AKQV-TF----------HR---------------KKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 136 ---------~~~~-~~----------~~---------------~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
.... ++ .. ...++++++||++|.|++++...|..
T Consensus 602 ~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 602 FLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 0000 00 01 12458999999999999999987754
No 301
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.22 E-value=6.8e-10 Score=91.35 Aligned_cols=164 Identities=23% Similarity=0.293 Sum_probs=109.9
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC--eEEEEEEEeCCCcccccccccccccC-
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC--GKIRFYCWDTAGQEKFGGLRDGYYIH- 85 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~- 85 (221)
...++-.|+|+|..++|||||+.+| .+.. ...++.+..|....+.-.+ ...++++|-..|...+..+....+..
T Consensus 21 ~~~~~k~vlvlG~~~~GKttli~~L-~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~ 97 (472)
T PF05783_consen 21 KLPSEKSVLVLGDKGSGKTTLIARL-QGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE 97 (472)
T ss_pred cCCCCceEEEEeCCCCchHHHHHHh-hccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence 4455679999999999999999995 4432 3345666666665544322 23578999998866555555444332
Q ss_pred ---ccEEEEEEeCCChhhhc-cHHHHHHHHHhhc------------------------------C---------------
Q 027593 86 ---GQCAIIMFDVTARLTYK-NVPTWHRDLCRVC------------------------------E--------------- 116 (221)
Q Consensus 86 ---~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~------------------------------~--------------- 116 (221)
--.+++|.|.+.+..+. .+..|+..+..+. .
T Consensus 98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~ 177 (472)
T PF05783_consen 98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS 177 (472)
T ss_pred cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence 24688899999886653 3333322211110 0
Q ss_pred ------------------CCCEEEEEeCCCCCc----c-cccH--------HHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593 117 ------------------NIPIVLCGNKVDVKN----R-QVKA--------KQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 117 ------------------~~p~i~v~nk~D~~~----~-~~~~--------~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 165 (221)
++|++||++|+|... . .... -.+.+|..+|...|++|++...+++.++.
T Consensus 178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~ 257 (472)
T PF05783_consen 178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK 257 (472)
T ss_pred ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence 149999999999622 1 1111 13467888999999999999999999999
Q ss_pred HHHHHHhCCC
Q 027593 166 YLARKLAGDP 175 (221)
Q Consensus 166 ~l~~~l~~~~ 175 (221)
.|.+.+...|
T Consensus 258 yi~h~l~~~~ 267 (472)
T PF05783_consen 258 YILHRLYGFP 267 (472)
T ss_pred HHHHHhccCC
Confidence 9999887643
No 302
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.21 E-value=2.3e-11 Score=96.60 Aligned_cols=157 Identities=17% Similarity=0.247 Sum_probs=75.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCC---ceeEeeeEEEEecCeEEEEEEEeCCCccccccccccc-----c
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT---IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----Y 83 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~ 83 (221)
..++|+|+|.+|+|||||||++.+-......... ..+|.....+.. .....+.+||.||..........| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4689999999999999999996431111111111 122233332221 222468999999965433333333 5
Q ss_pred cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC--c------ccccHHH-HHH--------HHhcC
Q 027593 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--N------RQVKAKQ-VTF--------HRKKN 146 (221)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~--~------~~~~~~~-~~~--------~~~~~ 146 (221)
...|.+|++.+-.-...-. .+...+... ++|+++|.+|+|.. . +....+. .+. ....+
T Consensus 113 ~~yD~fiii~s~rf~~ndv---~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~g 187 (376)
T PF05049_consen 113 YRYDFFIIISSERFTENDV---QLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAG 187 (376)
T ss_dssp GG-SEEEEEESSS--HHHH---HHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT
T ss_pred cccCEEEEEeCCCCchhhH---HHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcC
Confidence 5678887776643332211 222333333 89999999999961 1 1111111 111 11123
Q ss_pred c---eEEEeecCCC--CChHHHHHHHHHHHhCC
Q 027593 147 L---QYYEISAKSN--YNFEKPFLYLARKLAGD 174 (221)
Q Consensus 147 ~---~~~~~s~~~~--~~i~~~~~~l~~~l~~~ 174 (221)
+ ++|-+|+.+- .+...+...|.+.|...
T Consensus 188 v~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 188 VSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp -SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred CCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 2 5777887763 45667777777766554
No 303
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.20 E-value=1.9e-11 Score=90.65 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=45.0
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.+..+ |.++...+|+|++..+|++.+.|||+.+ +|.++.+...+.++++..+
T Consensus 140 p~eLS--GGqqQRVAIARAL~~~P~iilADEPTgn-----LD~~t~~~V~~ll~~~~~~ 191 (226)
T COG1136 140 PSELS--GGQQQRVAIARALINNPKIILADEPTGN-----LDSKTAKEVLELLRELNKE 191 (226)
T ss_pred chhcC--HHHHHHHHHHHHHhcCCCeEEeeCcccc-----CChHHHHHHHHHHHHHHHh
Confidence 44454 5556669999999999999999999999 9999999999999998654
No 304
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.19 E-value=2.4e-11 Score=92.02 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=54.4
Q ss_pred EEEEEeCCCccccccccccc------c--cCccEEEEEEeCCCh---hhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCC
Q 027593 63 RFYCWDTAGQEKFGGLRDGY------Y--IHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK 130 (221)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~------~--~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~ 130 (221)
.+.++|||||.+.-..+... + ...-++++++|+.-. ..|-. .++....... -..|.+.|+||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 68999999998754433322 2 233467777776533 33322 2222211111 289999999999997
Q ss_pred ccccc--HH----------------------HHHHHHhcC-c-eEEEeecCCCCChHHHHHHHHHHH
Q 027593 131 NRQVK--AK----------------------QVTFHRKKN-L-QYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 131 ~~~~~--~~----------------------~~~~~~~~~-~-~~~~~s~~~~~~i~~~~~~l~~~l 171 (221)
..... .+ ........+ . .++++|+.++.++.+++..+-+++
T Consensus 170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 62200 00 001111122 3 699999999999999998887765
No 305
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.18 E-value=4.6e-10 Score=83.65 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=81.7
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccCCc--eeEeee------EEEEec------------------
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTI--GVEVHP------LDFFTN------------------ 58 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~----~~~~~--~~~~~~------~~~~~~------------------ 58 (221)
.+.....|+|+|+.|+|||||+++++....... ..... +.+... ....+.
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 344567899999999999999999765311000 00000 000000 000000
Q ss_pred --CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc--
Q 027593 59 --CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-- 134 (221)
Q Consensus 59 --~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-- 134 (221)
..+..+.++++.|.-... ..+....+..+.|+|+.+.... +...... ...|.++++||+|+.....
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~~~~-----~~~a~iiv~NK~Dl~~~~~~~ 167 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKYPGM-----FKEADLIVINKADLAEAVGFD 167 (207)
T ss_pred hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhhHhH-----HhhCCEEEEEHHHccccchhh
Confidence 012456677777721100 1111233445567776644221 1111111 1567899999999965321
Q ss_pred cHHHHHHHHh--cCceEEEeecCCCCChHHHHHHHHHH
Q 027593 135 KAKQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 135 ~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
..+....... ...+++.+|++++.|++++++++.+.
T Consensus 168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 1122222222 24789999999999999999999774
No 306
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.17 E-value=1.8e-10 Score=87.86 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=76.0
Q ss_pred ccccccccccccCccEEEEEEeCCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHHHHHHHHhcCceEE
Q 027593 73 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYY 150 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~~~~~~~~~~~~~~ 150 (221)
+++..+.+.+++++|.+++|+|++++. ++..+..|+..+.. .+.|.++|+||+|+.... ...+........+.+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~ 101 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL 101 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence 567778888999999999999999877 88889899876644 489999999999996432 22233344445788999
Q ss_pred EeecCCCCChHHHHHHHHH
Q 027593 151 EISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 151 ~~s~~~~~~i~~~~~~l~~ 169 (221)
.+|+++|.|++++|..+..
T Consensus 102 ~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 102 MTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEecCCchhHHHHHhhhcC
Confidence 9999999999999987653
No 307
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.17 E-value=1.1e-09 Score=87.28 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=83.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCC---C-----------cccCCce---eEeeeEE-------EE-ecCeEEEEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE---K-----------KYEPTIG---VEVHPLD-------FF-TNCGKIRFYCW 67 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~---~-----------~~~~~~~---~~~~~~~-------~~-~~~~~~~~~~~ 67 (221)
.+.|+|+|+.++|||||+|+|..-... . ...+..| +|..+.. +. .++....+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 488999999999999999996543111 1 2233445 4444433 11 13445788999
Q ss_pred eCCCccccc-------cc----------------------cccccc-CccEEEEEE-eCCC----hhhhc-cHHHHHHHH
Q 027593 68 DTAGQEKFG-------GL----------------------RDGYYI-HGQCAIIMF-DVTA----RLTYK-NVPTWHRDL 111 (221)
Q Consensus 68 D~~g~~~~~-------~~----------------------~~~~~~-~~~~~i~v~-d~~~----~~s~~-~~~~~~~~~ 111 (221)
||+|..... .. ....+. ++++.++|. |.+- ++.+. .-..++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999933211 01 122244 788888887 6541 11222 223556666
Q ss_pred HhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCC
Q 027593 112 CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (221)
Q Consensus 112 ~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (221)
... ++|+++++||.|-..........++...++++++.+|+..
T Consensus 177 k~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred Hhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHH
Confidence 554 8999999999994322222222244566778877776553
No 308
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.17 E-value=1.8e-10 Score=85.77 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
|..+...+|++++..+|+++++|||.+. +|..++....+.+.+++.+
T Consensus 133 GGMrQRVaiARAL~~~P~lLLlDEPFgA-----LDalTR~~lq~~l~~lw~~ 179 (248)
T COG1116 133 GGMRQRVAIARALATRPKLLLLDEPFGA-----LDALTREELQDELLRLWEE 179 (248)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCcch-----hhHHHHHHHHHHHHHHHHh
Confidence 4556669999999999999999999999 9999999999999888664
No 309
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.15 E-value=3.1e-10 Score=80.88 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=45.3
Q ss_pred ecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCC
Q 027593 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL 212 (221)
Q Consensus 153 s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (221)
+.++ |.++....|++++..+|.+++.|||+.+ +|+....+++..++++.....
T Consensus 136 ~~LS--GGEQQRvaIARAiV~~P~vLlADEPTGN-----LDp~~s~~im~lfeeinr~Gt 188 (223)
T COG2884 136 SQLS--GGEQQRVAIARAIVNQPAVLLADEPTGN-----LDPDLSWEIMRLFEEINRLGT 188 (223)
T ss_pred cccC--chHHHHHHHHHHHccCCCeEeecCCCCC-----CChHHHHHHHHHHHHHhhcCc
Confidence 4444 4456669999999999999999999999 999999999999999876543
No 310
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2.3e-10 Score=90.93 Aligned_cols=134 Identities=21% Similarity=0.252 Sum_probs=95.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc-CCCCC-------------------cccCCceeEeeeEEEEecCeEEEEEEEeCCCc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLT-GEFEK-------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (221)
.-+.+|+-+|.+|||||-.+++. |.... ......|+++.+...++++.+..+.+.||||+
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 45789999999999999988653 22211 12234567777777788888999999999999
Q ss_pred ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEE
Q 027593 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 150 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~ 150 (221)
+.|..-.-..+..+|.+++|+|+....--.. ..+...| .+.|++=++||.|...+..-.-.-+....+++.+.
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~ 166 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCA 166 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCccee
Confidence 9998877778889999999999886522221 1222222 48999999999998876544433345555555444
Q ss_pred E
Q 027593 151 E 151 (221)
Q Consensus 151 ~ 151 (221)
+
T Consensus 167 P 167 (528)
T COG4108 167 P 167 (528)
T ss_pred c
Confidence 4
No 311
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=2.9e-10 Score=86.91 Aligned_cols=154 Identities=20% Similarity=0.252 Sum_probs=89.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (221)
..+|+|.+|+|||||++. +++- ..|+.| .+.+++. .+.-++-.+....+....+.+.+.+.+
T Consensus 34 I~GIIG~SGAGKSTLiR~-iN~L----e~PtsG------~v~v~G~--di~~l~~~~Lr~~R~~IGMIFQhFnLL----- 95 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRL-INLL----ERPTSG------SVFVDGQ--DLTALSEAELRQLRQKIGMIFQHFNLL----- 95 (339)
T ss_pred EEEEEcCCCCcHHHHHHH-Hhcc----CCCCCc------eEEEcCE--ecccCChHHHHHHHhhccEEecccccc-----
Confidence 468999999999999996 3322 234555 4445543 222223333333444444444443322
Q ss_pred CCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEEEeecCCCCChHHHHHHHHHHH
Q 027593 95 VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~~~s~~~~~~i~~~~~~l~~~l 171 (221)
+.+.-|+++.. |.-+.+ ..+........++....+. .-.+.+.++|.+.+ ...|+|++
T Consensus 96 -ssrTV~~NvA~------------PLeiag----~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQ--RVaIARAL 156 (339)
T COG1135 96 -SSRTVFENVAF------------PLELAG----VPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQ--RVAIARAL 156 (339)
T ss_pred -ccchHHhhhhh------------hHhhcC----CCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhh--HHHHHHHH
Confidence 22223333322 222211 0111112222233333332 23334666666655 48999999
Q ss_pred hCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 172 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 172 ~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
..+|++++.||+++. +||+..+.+++.++++..+
T Consensus 157 a~~P~iLL~DEaTSA-----LDP~TT~sIL~LL~~In~~ 190 (339)
T COG1135 157 ANNPKILLCDEATSA-----LDPETTQSILELLKDINRE 190 (339)
T ss_pred hcCCCEEEecCcccc-----CChHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999988654
No 312
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.12 E-value=1.4e-09 Score=84.43 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=66.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcc----------cCCceeEeeeEEEEecCeEEEEEEEeCCCcccc-------
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF------- 75 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------- 75 (221)
.++|+|+|.+|+|||||+|.|+........ ..+..+........-++..+.+.++||||.-..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999997764443321 112223333334445667789999999992211
Q ss_pred -------------------cccc-cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 76 -------------------GGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 76 -------------------~~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
...+ ...=...++++++++.+... ... .-+..+.......++|.|+.|+|...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~--~Di~~mk~Ls~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKP--LDIEFMKRLSKRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-H--HHHHHHHHHTTTSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chH--HHHHHHHHhcccccEEeEEecccccC
Confidence 0000 00012468899999876431 111 12234444455788999999999854
No 313
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.11 E-value=1.8e-10 Score=86.78 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=46.7
Q ss_pred EEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 149 ~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
......++|...+. .+|+..+..+|+++++|||+++ +|+...+...+.++++..+
T Consensus 133 ~r~p~~LSGGqkqR--vaIA~vLa~~P~iliLDEPta~-----LD~~~~~~l~~~l~~L~~~ 187 (235)
T COG1122 133 DRPPFNLSGGQKQR--VAIAGVLAMGPEILLLDEPTAG-----LDPKGRRELLELLKKLKEE 187 (235)
T ss_pred cCCccccCCcceee--HHhhHHHHcCCCEEEEcCCCCC-----CCHHHHHHHHHHHHHHHhc
Confidence 34455556666555 8899999999999999999999 9999999999999998776
No 314
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.11 E-value=1.7e-10 Score=85.40 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
|.+....+|++++..+|+++++|||++. +|...+.++...+.++..+
T Consensus 144 GGQ~QRiaIARAL~~~PklLIlDEptSa-----LD~siQa~IlnlL~~l~~~ 190 (252)
T COG1124 144 GGQRQRIAIARALIPEPKLLILDEPTSA-----LDVSVQAQILNLLLELKKE 190 (252)
T ss_pred hhHHHHHHHHHHhccCCCEEEecCchhh-----hcHHHHHHHHHHHHHHHHh
Confidence 4455668999999999999999999999 9999999999999987654
No 315
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.09 E-value=1.9e-09 Score=84.38 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=44.6
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
+...++...+ ...|+.++..+|+++++|||+.+ +|+..+.+..+.+++++.+.
T Consensus 134 ~~~lS~G~kq--rl~ia~aL~~~P~lliLDEPt~G-----LDp~~~~~~~~~l~~l~~~g 186 (293)
T COG1131 134 VRTLSGGMKQ--RLSIALALLHDPELLILDEPTSG-----LDPESRREIWELLRELAKEG 186 (293)
T ss_pred hhhcCHHHHH--HHHHHHHHhcCCCEEEECCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence 4445544444 46799999999999999999999 99999999999999987764
No 316
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=3e-09 Score=82.42 Aligned_cols=159 Identities=17% Similarity=0.127 Sum_probs=93.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCC-----CcccCCceeEeeeE--EEEe-------cCeEEEEEEEeCCCccccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-----KKYEPTIGVEVHPL--DFFT-------NCGKIRFYCWDTAGQEKFG 76 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~D~~g~~~~~ 76 (221)
...++++++|+-.||||||.+++..-.-- ...+...|.|.+.- ..++ .+...++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 34699999999999999999996531111 11122233333321 1111 2455778999999976433
Q ss_pred ccccccccCccEEEEEEeCCChhhhccHHH-HHHHHHhhcCCCCEEEEEeCCCCCcccccH---HHH--HHHHh------
Q 027593 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQV--TFHRK------ 144 (221)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~---~~~--~~~~~------ 144 (221)
+..-.-..-.|..++|+|+....-.....- .+..+. ....++|+||.|......+. +.. +..+.
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 332233344588999999987644433321 122221 35567788888864432111 111 11111
Q ss_pred -cCceEEEeecCCC----CChHHHHHHHHHHHhC
Q 027593 145 -KNLQYYEISAKSN----YNFEKPFLYLARKLAG 173 (221)
Q Consensus 145 -~~~~~~~~s~~~~----~~i~~~~~~l~~~l~~ 173 (221)
-+.|.+++|+..| +++.++...|..++..
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 1378999999999 6777777777776654
No 317
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.08 E-value=1.8e-09 Score=79.44 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-++...+|+++|+.+|+++++|||+.+ +.|.-.+++.+.+++++.+
T Consensus 138 SGGEQQMLAiaRALm~~PklLLLDEPs~G-----LaP~iv~~I~~~i~~l~~~ 185 (237)
T COG0410 138 SGGEQQMLAIARALMSRPKLLLLDEPSEG-----LAPKIVEEIFEAIKELRKE 185 (237)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEecCCccC-----cCHHHHHHHHHHHHHHHHc
Confidence 37778889999999999999999999999 9999999999999998753
No 318
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.1e-09 Score=80.72 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc---cccccccCccEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQCA 89 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~ 89 (221)
+.+|.++|...||||++.+. ++.+..+..+-....|.....-.+.+.-+.+.+||.|||-.+-. -..+.++.+.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KV-VFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKV-VFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhhe-eeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 45699999999999999987 66666554333333333333333444557899999999876432 235568999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHh---hcCCCCEEEEEeCCCCCcccccH-----------HHHHHHHhcCc-eEEEeec
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNRQVKA-----------KQVTFHRKKNL-QYYEISA 154 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~p~i~v~nk~D~~~~~~~~-----------~~~~~~~~~~~-~~~~~s~ 154 (221)
++|+|+.+. ..+.+.++...+.+ ..+++.+-+++.|.|........ +.+......++ ..|.+.+
T Consensus 106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 999998864 33344444333333 34678888999999974422211 11111122222 2344445
Q ss_pred CCCCChHHHHHHHHHHHhCC
Q 027593 155 KSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 155 ~~~~~i~~~~~~l~~~l~~~ 174 (221)
.....+-++|..+++.|...
T Consensus 185 IyDHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 185 IYDHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred ecchHHHHHHHHHHHHHhhh
Confidence 66788999999999988743
No 319
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.07 E-value=1.1e-09 Score=82.65 Aligned_cols=69 Identities=9% Similarity=0.095 Sum_probs=43.7
Q ss_pred EEEEEEeCCCcccc-------------ccccccccc-CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027593 62 IRFYCWDTAGQEKF-------------GGLRDGYYI-HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (221)
Q Consensus 62 ~~~~~~D~~g~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~ 127 (221)
..+.++|+||.... ..+...|+. ..+++++|+|+.....-.....+...+.. ...|+++|+||+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECC
Confidence 56889999997521 112334555 34688899988764333332233333332 378999999999
Q ss_pred CCCcc
Q 027593 128 DVKNR 132 (221)
Q Consensus 128 D~~~~ 132 (221)
|..+.
T Consensus 203 D~~~~ 207 (240)
T smart00053 203 DLMDE 207 (240)
T ss_pred CCCCc
Confidence 98754
No 320
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.05 E-value=1.3e-09 Score=85.68 Aligned_cols=101 Identities=11% Similarity=-0.015 Sum_probs=62.3
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH---
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--- 137 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~--- 137 (221)
++.+.++||+|..... ......+|.++++.... +..++..+...+ ..+|.++++||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH----hhhccEEEEEcccccchhHHHHHHH
Confidence 5678899999854211 22455677777774322 223333333222 2678899999999875432110
Q ss_pred H-----HHHHH---hcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593 138 Q-----VTFHR---KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 138 ~-----~~~~~---~~~~~~~~~s~~~~~~i~~~~~~l~~~l 171 (221)
. ..... ....+++.+|++++.|+++++.+|.+.+
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 0 01111 1224689999999999999999998864
No 321
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.05 E-value=3.9e-10 Score=91.79 Aligned_cols=157 Identities=21% Similarity=0.360 Sum_probs=119.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
+.+++|++|+|..++|||+|+.+|+.|.+.+...+.- ......+.++++...+.+.|.+|... ..|-..+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCch-----hhhhhhccce
Confidence 6789999999999999999999999999877544333 45566777788888999999888332 3456678999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc----ccccHHHH-HHHHhcCceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN----RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~----~~~~~~~~-~~~~~~~~~~~~~s~~~~~~i~~ 162 (221)
|+||...+..+|+.+..+...+.... ...|+++++++--... .....+.. ..+....+.+|++++.+|-++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 99999999999998887776665442 4678888887743321 11222222 34455568899999999999999
Q ss_pred HHHHHHHHHhC
Q 027593 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
.|+.+...+..
T Consensus 180 vf~~~~~k~i~ 190 (749)
T KOG0705|consen 180 VFQEVAQKIVQ 190 (749)
T ss_pred HHHHHHHHHHH
Confidence 99999887754
No 322
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.04 E-value=1.5e-09 Score=78.11 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=43.3
Q ss_pred EEEEEeCCCcccc----cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027593 63 RFYCWDTAGQEKF----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (221)
Q Consensus 63 ~~~~~D~~g~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~ 127 (221)
.+.++||||.... ...+..++..+|++++|.++....+-.....+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 3789999996432 244566789999999999999866655555555544433 44588888984
No 323
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.02 E-value=1.4e-09 Score=77.16 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
|.++...++++++.+...++++|||.+. +|+.-+.+..+.+.++..+
T Consensus 132 GGqRQRvALARclvR~~PilLLDEPFsA-----LdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 132 GGQRQRVALARCLVREQPILLLDEPFSA-----LDPALRAEMLALVSQLCDE 178 (231)
T ss_pred chHHHHHHHHHHHhccCCeEEecCchhh-----cCHHHHHHHHHHHHHHHHh
Confidence 4456669999999999999999999999 9999999999998887554
No 324
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.00 E-value=6.4e-09 Score=75.28 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....+++++..+|+++++|||..+ +|....+...+.++++..
T Consensus 74 gGq~qrv~laral~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~~~~ 119 (177)
T cd03222 74 GGELQRVAIAAALLRNATFYLFDEPSAY-----LDIEQRLNAARAIRRLSE 119 (177)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4446668899999999999999999999 999999999999987654
No 325
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.00 E-value=1.6e-09 Score=85.14 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=75.4
Q ss_pred EEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhh--cc-----HH---HHHHHHHhh--cCCCCEEE
Q 027593 55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY--KN-----VP---TWHRDLCRV--CENIPIVL 122 (221)
Q Consensus 55 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~--~~-----~~---~~~~~~~~~--~~~~p~i~ 122 (221)
..+...+..+.++|++||...+..|.+.+.++++++||+++++-.-. ++ +. .+...+... ..+.++|+
T Consensus 188 ~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL 267 (354)
T KOG0082|consen 188 VEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL 267 (354)
T ss_pred EEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence 33444668999999999999999999999999999999999864322 11 11 112222111 14789999
Q ss_pred EEeCCCCCcccc-----------------cHHHHH-----HH---Hh--cCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 123 CGNKVDVKNRQV-----------------KAKQVT-----FH---RK--KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 123 v~nk~D~~~~~~-----------------~~~~~~-----~~---~~--~~~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
++||.|+-...+ ..+... +. .. ..+.+..++|.+..+++.+|......+..
T Consensus 268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~ 345 (354)
T KOG0082|consen 268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ 345 (354)
T ss_pred EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence 999999722110 011111 11 11 23455666777778888888777766543
No 326
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=5.6e-09 Score=80.15 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=101.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-cCCceeEee--------------------eEEEEec------CeEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-EPTIGVEVH--------------------PLDFFTN------CGKI 62 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~-~~~~~~~~~--------------------~~~~~~~------~~~~ 62 (221)
.+++++|+++|+-.-|||||.+++.+-+...-. .-..|++.. .....+. .--.
T Consensus 7 ~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 7 IQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence 478999999999999999999996653221100 000111110 0000111 1125
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH---
Q 027593 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV--- 139 (221)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~--- 139 (221)
++.++|.||++-.-.....-..-.|++++|+.++.+-....-+.-+-.+ ....-+-++++=||.|+..++...+..
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIGIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhccceEEEEecccceecHHHHHHHHHHH
Confidence 7899999998854433333333458999999988764433322222222 222456778888999998755444332
Q ss_pred -HHHH---hcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 140 -TFHR---KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 140 -~~~~---~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
++.+ ..+.+.+++||..+.|++-++..|.+.+..
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 2222 246799999999999999999999997654
No 327
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.99 E-value=7e-09 Score=87.35 Aligned_cols=119 Identities=10% Similarity=0.061 Sum_probs=70.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc----------ccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDG 81 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~ 81 (221)
..++|+|+|.+|+||||++|.+++...........+++.. ........+..+.++||||....... ...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 3579999999999999999997765433222222333332 22211123468999999996643210 111
Q ss_pred ccc--CccEEEEEEeCCChhhhccHHHHHHHHHhhcC---CCCEEEEEeCCCCCc
Q 027593 82 YYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (221)
Q Consensus 82 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~i~v~nk~D~~~ 131 (221)
++. ..|++++|..++.......-..++..+...+. -.-+||++|..|...
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 222 46899999877643332222244555544442 356789999999753
No 328
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.99 E-value=1.9e-09 Score=78.32 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=44.9
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-|+..-.|.++...-|+|+|.-+|+++++|||++. +||-+...+++.+.++..+
T Consensus 145 ~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSA-----LDPIsT~kIEeLi~eLk~~ 198 (253)
T COG1117 145 KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA-----LDPISTLKIEELITELKKK 198 (253)
T ss_pred CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccc-----cCchhHHHHHHHHHHHHhc
Confidence 34454446667777899999999999999999999 9999999999998888654
No 329
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.99 E-value=1.7e-09 Score=86.09 Aligned_cols=81 Identities=15% Similarity=-0.010 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-----------------EEEEEEeCCCccccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-----------------IRFYCWDTAGQEKFG 76 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~ 76 (221)
++|+++|.|+||||||+|+++... ......+++|..+....+...+ ..+.++|+||.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 689999999999999999966554 3445556666665543332111 358999999965422
Q ss_pred ccc-------cccccCccEEEEEEeCC
Q 027593 77 GLR-------DGYYIHGQCAIIMFDVT 96 (221)
Q Consensus 77 ~~~-------~~~~~~~~~~i~v~d~~ 96 (221)
... ...++.+|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 211 12267899999999985
No 330
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.98 E-value=9.6e-10 Score=86.86 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=46.2
Q ss_pred ceEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 147 LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 147 ~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
...-..+.++|.+ +...+|+++|..+|.++++|||.+. +|..-+.+...+++++..+
T Consensus 129 ~~~R~p~qLSGGQ--qQRVALARAL~~~P~vLLLDEPlSa-----LD~kLR~~mr~Elk~lq~~ 185 (352)
T COG3842 129 FADRKPHQLSGGQ--QQRVALARALVPEPKVLLLDEPLSA-----LDAKLREQMRKELKELQRE 185 (352)
T ss_pred hhhhChhhhChHH--HHHHHHHHHhhcCcchhhhcCcccc-----hhHHHHHHHHHHHHHHHHh
Confidence 3344456666555 5559999999999999999999999 9999999999988887654
No 331
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=3.7e-10 Score=92.97 Aligned_cols=199 Identities=17% Similarity=0.115 Sum_probs=128.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCC--C--C------------cccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEF--E--K------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~--~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 76 (221)
.-+|++.-+-.+||||+-++++.-.- . . ......|++...--..+.+.+.++.++||||+-.|.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 34689999999999999998663111 0 0 111234555555555556668899999999999998
Q ss_pred ccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc--eEEEeec
Q 027593 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISA 154 (221)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~--~~~~~s~ 154 (221)
-.....++-.|++++|+++...---.....|++.-+. +.|.+.++||+|........-.......++. .++.+..
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry---~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPi 195 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY---NVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPI 195 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhc---CCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEccc
Confidence 8888889999999999998876554556677766544 8999999999998775544433333333332 3333333
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCCCCCCccc
Q 027593 155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAF 220 (221)
Q Consensus 155 ~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (221)
.. +..|..++..+. ...+++-.+.-.. -....-++..+....+.++...+-+++.||++.
T Consensus 196 g~----e~~f~GvvDlv~-~kai~~~g~~g~~-i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~ 255 (721)
T KOG0465|consen 196 GS----ESNFKGVVDLVN-GKAIYWDGENGEI-VRKDEIPEDLEELAEEKRQALIETLADVDETLA 255 (721)
T ss_pred cc----cccchhHHhhhh-ceEEEEcCCCCce-eEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 32 335555666433 3333333222111 111345667777777777777888888888753
No 332
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=2.6e-09 Score=88.98 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=83.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc----------------cCCceeEeeeEEEEe-----cCeEEEEEEEeC
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------------EPTIGVEVHPLDFFT-----NCGKIRFYCWDT 69 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-----~~~~~~~~~~D~ 69 (221)
....+|+++|+-++|||+|+..+.. ..++.. ....|++.+....++ .+...-++++||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~-~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVE-QTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhce-eccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 4568999999999999999997543 222221 112344444444332 355678999999
Q ss_pred CCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 027593 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (221)
Q Consensus 70 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~ 129 (221)
||+-++.......++.+|++++|+|+...-.+..-+.....+.. +.|+++|+||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~---~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN---RLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc---cCcEEEEEehhHH
Confidence 99999998888889999999999999987665443333333333 8999999999996
No 333
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=5.6e-09 Score=79.23 Aligned_cols=145 Identities=17% Similarity=0.079 Sum_probs=96.7
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCC--------------CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (221)
.-.++.++|+.+|+-.-|||||..++..-.. ..+.....|+|++...+...-.+.++..+|+||+.
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 3467889999999999999999887543111 01223456788888777777778899999999998
Q ss_pred cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCC-CEEEEEeCCCCCccccc-----HHHHHHHHhcC-
Q 027593 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNRQVK-----AKQVTFHRKKN- 146 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p~i~v~nk~D~~~~~~~-----~~~~~~~~~~~- 146 (221)
.|-...-.-..+.|+.|+|+++.+..-.+.....+ +.+.. +. .+++++||+|+.+.... .+..++...++
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larqv-Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQV-GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhhc-CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 87665555566789999999999875444322111 11222 44 45677799999863322 23344555554
Q ss_pred ----ceEEEeecC
Q 027593 147 ----LQYYEISAK 155 (221)
Q Consensus 147 ----~~~~~~s~~ 155 (221)
.|.+.-|++
T Consensus 164 ~gd~~Pii~gSal 176 (394)
T COG0050 164 PGDDTPIIRGSAL 176 (394)
T ss_pred CCCCcceeechhh
Confidence 456665554
No 334
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=2.1e-08 Score=75.46 Aligned_cols=45 Identities=29% Similarity=0.340 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++.
T Consensus 134 gG~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~~~~~~l~~~~ 178 (220)
T cd03293 134 GGMRQRVALARALAVDPDVLLLDEPFSA-----LDALTREQLQEELLDIW 178 (220)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCC-----CCHHHHHHHHHHHHHHH
Confidence 4455668899999999999999999999 99999999999998864
No 335
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=4.9e-09 Score=88.27 Aligned_cols=159 Identities=21% Similarity=0.207 Sum_probs=102.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCC----CcccCCceeEeeeEEE--------Eec----CeEEEEEEEeCCCcc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYEPTIGVEVHPLDF--------FTN----CGKIRFYCWDTAGQE 73 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~----~~~~~~~~~D~~g~~ 73 (221)
.-+..-|||+|+..+|||-|+..+...... ......+|.|+.+..- .-+ ..-.-+.++||||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 345677999999999999999985543332 2233445555555321 000 112347899999999
Q ss_pred cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-------cccc-----------
Q 027593 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-------RQVK----------- 135 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-------~~~~----------- 135 (221)
.|..++......|+.+|+|+|+....-...+. .++.++. .+.|+|+++||+|..- ..+.
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiE-Si~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~ 628 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIE-SINLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ 628 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhH-HHHHHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence 99999999999999999999998663322221 1222222 3899999999999521 1100
Q ss_pred HHH--------HHHHHh-c-------------CceEEEeecCCCCChHHHHHHHHHHH
Q 027593 136 AKQ--------VTFHRK-K-------------NLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 136 ~~~--------~~~~~~-~-------------~~~~~~~s~~~~~~i~~~~~~l~~~l 171 (221)
.+. .+++.. + .+..+++||.+|+|+-+++.+|+...
T Consensus 629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 000 011110 1 13568899999999999888887743
No 336
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=8.9e-09 Score=82.27 Aligned_cols=155 Identities=15% Similarity=0.056 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
.|+..|+-.-|||||++.+.++... .+.....|+|.+..-......+..+.++|.||++++-.....-+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 5788999999999999996654442 223456677777766666666679999999999987766666677889999999
Q ss_pred eCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-H---HHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-T---FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~---~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
++++..-..... .-.+.......-.++|+||+|..+........ + ......+++|.+|+.+|+|++++.+.|..
T Consensus 82 ~~deGl~~qtgE--hL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~ 159 (447)
T COG3276 82 AADEGLMAQTGE--HLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELID 159 (447)
T ss_pred eCccCcchhhHH--HHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHH
Confidence 997653322221 11122222344558999999997643222211 1 11233567899999999999999999998
Q ss_pred HH
Q 027593 170 KL 171 (221)
Q Consensus 170 ~l 171 (221)
..
T Consensus 160 L~ 161 (447)
T COG3276 160 LL 161 (447)
T ss_pred hh
Confidence 65
No 337
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.97 E-value=1.4e-09 Score=83.70 Aligned_cols=79 Identities=14% Similarity=-0.018 Sum_probs=53.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-----------------EEEEEEeCCCccccccc
Q 027593 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-----------------IRFYCWDTAGQEKFGGL 78 (221)
Q Consensus 16 i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~~~ 78 (221)
|+++|.|+||||||+|++..... .....+++|..+....+...+ ..+.++|+||.......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 58999999999999999665443 344556666565544332211 25899999996543221
Q ss_pred c----cc---cccCccEEEEEEeCC
Q 027593 79 R----DG---YYIHGQCAIIMFDVT 96 (221)
Q Consensus 79 ~----~~---~~~~~~~~i~v~d~~ 96 (221)
. .. .++.+|+++.|+|+.
T Consensus 79 ~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 12 257899999999874
No 338
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.97 E-value=4.4e-09 Score=80.18 Aligned_cols=102 Identities=11% Similarity=-0.004 Sum_probs=61.3
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHH
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT 140 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~ 140 (221)
++.+.++.|.|--. .-......+|.++++.-..-....+-++.=+- .+.-++|+||.|....+.......
T Consensus 143 G~DvIIVETVGvGQ---sev~I~~~aDt~~~v~~pg~GD~~Q~iK~Gim-------EiaDi~vINKaD~~~A~~a~r~l~ 212 (323)
T COG1703 143 GYDVIIVETVGVGQ---SEVDIANMADTFLVVMIPGAGDDLQGIKAGIM-------EIADIIVINKADRKGAEKAARELR 212 (323)
T ss_pred CCCEEEEEecCCCc---chhHHhhhcceEEEEecCCCCcHHHHHHhhhh-------hhhheeeEeccChhhHHHHHHHHH
Confidence 35567777766211 11233556788888776655544433332222 344589999999766433322221
Q ss_pred HHH----------hcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 141 FHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 141 ~~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
.+. ....+.+.+|+..|+|++++++.|..-..
T Consensus 213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 111 12357899999999999999998887543
No 339
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.97 E-value=5.8e-09 Score=82.06 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=42.9
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.+.++|..- ...+++++|..+|++.++|||.++ +|..-+.....+++++..
T Consensus 131 P~~LSGGQr--QRVAlaRAlVr~P~v~L~DEPlSn-----LDa~lR~~mr~ei~~lh~ 181 (338)
T COG3839 131 PLQLSGGQR--QRVALARALVRKPKVFLLDEPLSN-----LDAKLRVLMRSEIKKLHE 181 (338)
T ss_pred cccCChhhH--HHHHHHHHHhcCCCEEEecCchhH-----hhHHHHHHHHHHHHHHHH
Confidence 456665554 458899999999999999999999 999999888888888654
No 340
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.97 E-value=1.6e-08 Score=79.82 Aligned_cols=47 Identities=26% Similarity=0.315 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-......|++++..+|+++++|||+.+ +|+..++...+.++++..+
T Consensus 141 ~G~~qrl~la~aL~~~P~lllLDEPt~g-----LD~~~~~~l~~~l~~l~~~ 187 (306)
T PRK13537 141 GGMKRRLTLARALVNDPDVLVLDEPTTG-----LDPQARHLMWERLRSLLAR 187 (306)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhC
Confidence 3345557899999999999999999999 9999999999999988654
No 341
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.96 E-value=3.8e-09 Score=77.71 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|....+...+.++++..+
T Consensus 130 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~ 176 (190)
T TIGR01166 130 GGEKKRVAIAGAVAMRPDVLLLDEPTAG-----LDPAGREQMLAILRRLRAE 176 (190)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHc
Confidence 4455667899999999999999999999 9999999999999887543
No 342
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.95 E-value=2.8e-09 Score=75.98 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=41.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (221)
..++|+++|.+|+|||||+|+++. .......+..|+|.....+.... .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~-~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRS-KKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhc-CCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 468899999999999999999654 34455667778777665544322 377999998
No 343
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.2e-09 Score=86.46 Aligned_cols=131 Identities=20% Similarity=0.198 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCC------C--------cccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLT--GEFE------K--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~--~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 77 (221)
-+|+++.+-.+||||.-.+++. |... . ......|++..+..+.+++.++++.++||||+..|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 4789999999999999988653 2211 1 1123467888888889999999999999999999998
Q ss_pred cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc
Q 027593 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (221)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~ 147 (221)
.....++-.|+++.|||++..--.+.+..|++.-.- +.|.++++||+|................++.
T Consensus 118 everclrvldgavav~dasagve~qtltvwrqadk~---~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF---KIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeehhcccc---CCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 888889999999999999987666777788765322 7899999999998765544443344444444
No 344
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.94 E-value=1.8e-08 Score=80.52 Aligned_cols=47 Identities=28% Similarity=0.309 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.......|++++..+|+++++|||+.+ +|+..+..+.+.++++..+
T Consensus 175 ~G~kqrv~lA~aL~~~P~lLiLDEPt~g-----LD~~~r~~l~~~l~~l~~~ 221 (340)
T PRK13536 175 GGMKRRLTLARALINDPQLLILDEPTTG-----LDPHARHLIWERLRSLLAR 221 (340)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHhC
Confidence 4445568899999999999999999999 9999999999999987554
No 345
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.94 E-value=3e-09 Score=76.67 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=44.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (221)
..++|+++|.+|+|||||+|++. +.......+.+|+|.....+.++ ..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~-~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLK-RSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHh-CcccceecCCCCeEcceEEEEeC---CCEEEEECcC
Confidence 34899999999999999999955 44455667788988887766653 3588999998
No 346
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=4.9e-08 Score=77.00 Aligned_cols=140 Identities=16% Similarity=0.292 Sum_probs=81.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCc---------ccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc--------
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------- 75 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------- 75 (221)
.|+++++|++|.|||||+|.|+....... ...+.........+.-++..++++++||||--..
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 59999999999999999999665533321 1113333344444444667789999999992211
Q ss_pred -----------------ccccccccc--CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH
Q 027593 76 -----------------GGLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (221)
Q Consensus 76 -----------------~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~ 136 (221)
....+..+. ..+++++++..+.. +...+. +..+...+....+|.|+.|.|........
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~KaD~lT~~El~ 177 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIAKADTLTKDELN 177 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceeeccccCCHHHHH
Confidence 111111222 56788888876533 222222 22233344578888899999986433222
Q ss_pred ----HHHHHHHhcCceEEEeecC
Q 027593 137 ----KQVTFHRKKNLQYYEISAK 155 (221)
Q Consensus 137 ----~~~~~~~~~~~~~~~~s~~ 155 (221)
...+.....++.+|.....
T Consensus 178 ~~K~~I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 178 QFKKRIRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred HHHHHHHHHHHHcCcceecCCCC
Confidence 1224445556665554444
No 347
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.94 E-value=3.9e-10 Score=81.08 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+....+|+++|..+|.+.++|||.++ +||-+..++...++.+..-.
T Consensus 141 SGGERRR~EIARaLa~~P~fiLLDEPFAG-----VDPiaV~dIq~iI~~L~~rg 189 (243)
T COG1137 141 SGGERRRVEIARALAANPKFILLDEPFAG-----VDPIAVIDIQRIIKHLKDRG 189 (243)
T ss_pred ccchHHHHHHHHHHhcCCCEEEecCCccC-----CCchhHHHHHHHHHHHHhCC
Confidence 35567779999999999999999999999 99999999888888776543
No 348
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.93 E-value=4.3e-09 Score=85.16 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCce---EEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCC
Q 027593 136 AKQVTFHRKKNLQ---YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL 212 (221)
Q Consensus 136 ~~~~~~~~~~~~~---~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (221)
.+..+++..++++ .-.++..+ --.+.+.+|.++|..+++++++|||++. +.|++..++...++++..+..
T Consensus 119 ~~i~~l~~~yGl~vdp~~~V~dLs--VG~qQRVEIlKaLyr~a~iLILDEPTaV-----LTP~E~~~lf~~l~~l~~~G~ 191 (501)
T COG3845 119 ARIKELSERYGLPVDPDAKVADLS--VGEQQRVEILKALYRGARLLILDEPTAV-----LTPQEADELFEILRRLAAEGK 191 (501)
T ss_pred HHHHHHHHHhCCCCCccceeecCC--cchhHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHCCC
Confidence 3444666677664 23333333 1245568899999999999999999999 999999999999999887764
No 349
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.93 E-value=2.8e-09 Score=74.52 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=41.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (221)
+++++|.+|+|||||+|+++.... .......|.+.+...+.++. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK-VSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 899999999999999999765544 34556677777766666543 5799999995
No 350
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.92 E-value=5.9e-09 Score=82.19 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..+
T Consensus 127 gG~~qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~~~~~ 173 (302)
T TIGR01188 127 GGMRRRLDIAASLIHQPDVLFLDEPTTG-----LDPRTRRAIWDYIRALKEE 173 (302)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhC
Confidence 3445557899999999999999999999 9999999999999987644
No 351
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.1e-08 Score=73.80 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
|-+.-..+|++.++.+|++.++|||.++ +|..+.+...+.+..++.+.
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSG-----LDIdalk~V~~~i~~lr~~~ 194 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSG-----LDIDALKIVAEGINALREEG 194 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcC-----ccHHHHHHHHHHHHHHhcCC
Confidence 3455569999999999999999999999 99999999999999887764
No 352
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.92 E-value=4.5e-09 Score=77.76 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=45.3
Q ss_pred EEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 149 ~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
..+.|.++|.=.++ .+|+|++.-+|++.++|||+++ +||-....+.+.+++++..
T Consensus 140 ~~~PsELSGGM~KR--vaLARAialdPell~~DEPtsG-----LDPI~a~~~~~LI~~L~~~ 194 (263)
T COG1127 140 DLYPSELSGGMRKR--VALARAIALDPELLFLDEPTSG-----LDPISAGVIDELIRELNDA 194 (263)
T ss_pred hhCchhhcchHHHH--HHHHHHHhcCCCEEEecCCCCC-----CCcchHHHHHHHHHHHHHh
Confidence 33456666554444 8899999999999999999999 9999999999999887654
No 353
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=4.9e-08 Score=76.92 Aligned_cols=82 Identities=20% Similarity=0.094 Sum_probs=56.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-------------C-----eEEEEEEEeCCCccc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-------------C-----GKIRFYCWDTAGQEK 74 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-----~~~~~~~~D~~g~~~ 74 (221)
.++++|+|.|++|||||+|++.... ......+.+|..+....+. . ....+.++|++|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 3789999999999999999966544 3334455556555443221 1 235689999999654
Q ss_pred c----ccccccc---ccCccEEEEEEeCC
Q 027593 75 F----GGLRDGY---YIHGQCAIIMFDVT 96 (221)
Q Consensus 75 ~----~~~~~~~---~~~~~~~i~v~d~~ 96 (221)
. +++-..| ++.+|+++-|+++.
T Consensus 80 GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 80 GASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred CcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3 3333333 78899999999987
No 354
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.91 E-value=8.3e-09 Score=76.62 Aligned_cols=46 Identities=33% Similarity=0.442 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 160 FEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 160 i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-++.+.-|+|+++.+|+++++|||..+ +|...+....+.+.+++..
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~G-----LDl~~re~ll~~l~~~~~~ 220 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQG-----LDLIAREQLLNRLEELAAS 220 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCcccc-----CChHHHHHHHHHHHHHhcC
Confidence 345567799999999999999999999 9999999999999988664
No 355
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.91 E-value=3.9e-08 Score=73.18 Aligned_cols=46 Identities=28% Similarity=0.216 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|........+.+++...
T Consensus 132 ~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 177 (204)
T PRK13538 132 AGQQRRVALARLWLTRAPLWILDEPFTA-----IDKQGVARLEALLAQHAE 177 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence 4445568899999999999999999999 999999999999988754
No 356
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.90 E-value=4.8e-08 Score=74.35 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+.+.....|++++..+|+++++|||..+ +|+...+...+.++++.
T Consensus 135 ~G~~qrl~laral~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~ 179 (236)
T TIGR03864 135 GGHRRRVEIARALLHRPALLLLDEPTVG-----LDPASRAAIVAHVRALC 179 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHHHHHHHHHHHH
Confidence 4455567899999999999999999999 99999999999998875
No 357
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.90 E-value=2.7e-08 Score=74.65 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|....+...+.++++..+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 187 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGN-----LDPELSRDIMRLFEEFNRR 187 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHC
Confidence 4456668899999999999999999999 9999999999999887543
No 358
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.90 E-value=5.7e-08 Score=71.94 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|++.++|||+.+ +|....+...+.+++...+
T Consensus 130 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 176 (198)
T TIGR01189 130 AGQQRRLALARLWLSRAPLWILDEPTTA-----LDKAGVALLAGLLRAHLAR 176 (198)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhC
Confidence 4455668899999999999999999999 9999999999999887544
No 359
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.90 E-value=1.1e-08 Score=76.95 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....|++++..+|+++++|||+.+ +|+...+...+.++++..+
T Consensus 139 ~G~~qrv~laral~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~~ 185 (218)
T cd03266 139 TGMRQKVAIARALVHDPPVLLLDEPTTG-----LDVMATRALREFIRQLRAL 185 (218)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcC-----CCHHHHHHHHHHHHHHHHC
Confidence 4456668899999999999999999999 9999999999999887543
No 360
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.90 E-value=8.8e-09 Score=74.30 Aligned_cols=45 Identities=18% Similarity=0.368 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 162 ~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
+....|+++++.+|.++.+|||.++ +|....+.+.+.++++..+.
T Consensus 139 kqkV~iARAlvh~P~i~vlDEP~sG-----LDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 139 KQKVAIARALVHDPSILVLDEPTSG-----LDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCCCC-----ccHHHHHHHHHHHHHhhcCC
Confidence 3457899999999999999999999 99999999999999887754
No 361
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=2.8e-08 Score=74.24 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 131 ~G~~qrl~la~al~~~p~~lllDEP~~~-----LD~~~~~~~~~~l~~~~~ 176 (210)
T cd03269 131 KGNQQKVQFIAAVIHDPELLILDEPFSG-----LDPVNVELLKDVIRELAR 176 (210)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHH
Confidence 4455567899999999999999999999 999999999999988754
No 362
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=4.6e-08 Score=70.85 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|........+.++++..+
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~~ 144 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSG-----LDPESRREFWELLRELKKE 144 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHC
Confidence 4445668899999999999999999999 9999999999999987654
No 363
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=4e-08 Score=72.60 Aligned_cols=153 Identities=15% Similarity=0.186 Sum_probs=83.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCC---------cccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc---cccc-
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK---------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGLR- 79 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---~~~~- 79 (221)
.|+|+|+|.+|.|||||+|.+...+... .+..+..+..-.+.+.-.+....+.++||||--.. ...|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 6999999999999999999966544332 11122222223333334566678999999993221 1111
Q ss_pred ----------------------ccccc--CccEEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-
Q 027593 80 ----------------------DGYYI--HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ- 133 (221)
Q Consensus 80 ----------------------~~~~~--~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~- 133 (221)
...+. .++++++++..+ ..+...+. ..+..+.+ ...++.|+-|.|...-.
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~---vvNvvPVIakaDtlTleE 201 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE---VVNVVPVIAKADTLTLEE 201 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh---hheeeeeEeecccccHHH
Confidence 11122 346666666655 33443332 23333333 56677788899964311
Q ss_pred ---ccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 134 ---VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 134 ---~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
......+....+++.+++-.+.+...-+...+.-++
T Consensus 202 r~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR 240 (336)
T KOG1547|consen 202 RSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVR 240 (336)
T ss_pred HHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHH
Confidence 111222444566777766555544433333333333
No 364
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.89 E-value=1.6e-08 Score=73.91 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||..+ +|+...+...+.++++..
T Consensus 107 ~G~~qrl~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~ 152 (182)
T cd03215 107 GGNQQKVVLARWLARDPRVLILDEPTRG-----VDVGAKAEIYRLIRELAD 152 (182)
T ss_pred HHHHHHHHHHHHHccCCCEEEECCCCcC-----CCHHHHHHHHHHHHHHHH
Confidence 4445567899999999999999999999 999999999999988754
No 365
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=8.3e-09 Score=81.31 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....|++++..+|+++++|||+++ +|+.......+.++++..+
T Consensus 168 gGqkqrvalA~aL~~~P~lLlLDEPt~~-----LD~~~~~~l~~~l~~l~~~ 214 (305)
T PRK13651 168 GGQKRRVALAGILAMEPDFLVFDEPTAG-----LDPQGVKEILEIFDNLNKQ 214 (305)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHC
Confidence 4456668899999999999999999999 9999999999999887643
No 366
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=8.5e-09 Score=81.77 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.+.+.....|++++..+|+++++|||+.+ +|+...+...+.+.++..+
T Consensus 178 SgGqkqRvaiAraL~~~p~iLLLDEPtsg-----LD~~~~~~l~~~L~~l~~~ 225 (320)
T PRK13631 178 SGGQKRRVAIAGILAIQPEILIFDEPTAG-----LDPKGEHEMMQLILDAKAN 225 (320)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHC
Confidence 35566778999999999999999999999 9999999999999887543
No 367
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.89 E-value=4.3e-08 Score=77.38 Aligned_cols=47 Identities=28% Similarity=0.309 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..+
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~~~~~ 184 (303)
T TIGR01288 138 GGMKRRLTLARALINDPQLLILDEPTTG-----LDPHARHLIWERLRSLLAR 184 (303)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhC
Confidence 4455667899999999999999999999 9999999999999987554
No 368
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.89 E-value=3.4e-09 Score=91.52 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++..-.|+|++..+|+++++|||+++ +|.+..+...+.+.+...
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSa-----LD~~sE~~I~~~L~~~~~ 657 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSA-----LDPETEAIILQNLLQILQ 657 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcccc-----cCHhHHHHHHHHHHHHhc
Confidence 4456668899999999999999999999 999999999999988763
No 369
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.88 E-value=4.9e-08 Score=74.10 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|....+...+.++++..+
T Consensus 136 ~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~ 182 (232)
T cd03218 136 GGERRRVEIARALATNPKFLLLDEPFAG-----VDPIAVQDIQKIIKILKDR 182 (232)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence 4456667899999999999999999999 9999999999999887543
No 370
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=4.3e-08 Score=74.58 Aligned_cols=46 Identities=26% Similarity=0.257 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+.......+.++++..
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 184 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAG-----LDPIASGVIDDLIRSLKK 184 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 371
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.88 E-value=1.4e-08 Score=76.41 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=56.2
Q ss_pred EEEEEEeCCC--cccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH
Q 027593 62 IRFYCWDTAG--QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 139 (221)
Q Consensus 62 ~~~~~~D~~g--~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~ 139 (221)
..+.++.|.| |.+ .....-+|.+++|....-....+.++.=+-+ .+-++|+||+|...........
T Consensus 122 ~D~IiiETVGvGQsE-----~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE-------iaDi~vVNKaD~~gA~~~~~~l 189 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE-----VDIADMADTVVLVLVPGLGDEIQAIKAGIME-------IADIFVVNKADRPGADRTVRDL 189 (266)
T ss_dssp -SEEEEEEESSSTHH-----HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH-------H-SEEEEE--SHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCccH-----HHHHHhcCeEEEEecCCCccHHHHHhhhhhh-------hccEEEEeCCChHHHHHHHHHH
Confidence 4456666655 222 2234567898898887766555544432222 2458999999965433222222
Q ss_pred H----HHHh----cCceEEEeecCCCCChHHHHHHHHHH
Q 027593 140 T----FHRK----KNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 140 ~----~~~~----~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
. +... ..-+++.+||.++.|+++++..|.+.
T Consensus 190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 1 1111 12489999999999999999888774
No 372
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=2.4e-08 Score=74.80 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 133 gG~~qrl~la~al~~~p~~lllDEPt~~-----LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03259 133 GGQQQRVALARALAREPSLLLLDEPLSA-----LDAKLREELREELKELQR 178 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4455567799999999999999999999 999999999999988754
No 373
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.88 E-value=3.4e-08 Score=73.57 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 137 ~G~~qr~~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 182 (206)
T TIGR03608 137 GGEQQRVALARAILKDPPLILADEPTGS-----LDPKNRDEVLDLLLELND 182 (206)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcCC-----CCHHHHHHHHHHHHHHHh
Confidence 4455667899999999999999999999 999999999999988754
No 374
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.88 E-value=1.2e-08 Score=76.30 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....|++++..+|+++++|||+.+ +|+...+...+.++++..+
T Consensus 137 gG~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~ 183 (211)
T cd03225 137 GGQKQRVAIAGVLAMDPDILLLDEPTAG-----LDPAGRRELLELLKKLKAE 183 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHc
Confidence 4445567899999999999999999999 9999999999999887543
No 375
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.88 E-value=4.2e-09 Score=73.38 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL 212 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (221)
|.++...+|+++++.+|++++.|||++. +|++-..+....++++..-++
T Consensus 144 ggqqqrvaiaralmmkpqvllfdeptaa-----ldpeitaqvv~iikel~~tgi 192 (242)
T COG4161 144 GGQQQRVAIARALMMEPQVLLFDEPTAA-----LDPEITAQIVSIIKELAETGI 192 (242)
T ss_pred cchhhhHHHHHHHhcCCcEEeecCcccc-----cCHHHHHHHHHHHHHHHhcCc
Confidence 4456668999999999999999999999 999999999999999877654
No 376
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.88 E-value=2.3e-08 Score=80.30 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++....|++++..+|+++++|||.++ +|...+.+..+.++++..
T Consensus 137 gGq~QRvaLARaL~~~P~llLLDEP~s~-----LD~~~r~~l~~~L~~l~~ 182 (353)
T TIGR03265 137 GGQQQRVALARALATSPGLLLLDEPLSA-----LDARVREHLRTEIRQLQR 182 (353)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 5566678999999999999999999999 999999999999988754
No 377
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.88 E-value=7e-08 Score=71.83 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..+
T Consensus 129 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 175 (205)
T cd03226 129 GGQKQRLAIAAALLSGKDLLIFDEPTSG-----LDYKNMERVGELIRELAAQ 175 (205)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHHC
Confidence 4456668899999999999999999999 9999999999999887543
No 378
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.87 E-value=5.2e-08 Score=73.01 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|+.......+.++++..+
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~ 186 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGN-----LDPDLSERILDLLKRLNKR 186 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHc
Confidence 4456668899999999999999999999 9999999999999887543
No 379
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=1.8e-08 Score=78.80 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+....+..+.++++..
T Consensus 147 gGq~qrv~iAraL~~~P~llllDEPt~g-----LD~~~~~~l~~~l~~l~~ 192 (287)
T PRK13637 147 GGQKRRVAIAGVVAMEPKILILDEPTAG-----LDPKGRDEILNKIKELHK 192 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHH
Confidence 4455668899999999999999999999 999999999999988754
No 380
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.87 E-value=4.5e-08 Score=68.68 Aligned_cols=42 Identities=33% Similarity=0.430 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHh
Q 027593 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA 207 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~ 207 (221)
+.....|++++..+|+++++|||..+ +|........+.++++
T Consensus 75 ~~~rv~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 75 EKMRLALAKLLLENPNLLLLDEPTNH-----LDLESIEALEEALKEY 116 (144)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHc
Confidence 44557799999999999999999999 9999999999988876
No 381
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.87 E-value=5.7e-08 Score=73.13 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||..+ +|+...+...+.++++..
T Consensus 136 ~G~~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~ 181 (220)
T cd03263 136 GGMKRKLSLAIALIGGPSVLLLDEPTSG-----LDPASRRAIWDLILEVRK 181 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCC-----CCHHHHHHHHHHHHHHhc
Confidence 4455668899999999999999999999 999999999999988754
No 382
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.87 E-value=6.7e-08 Score=71.71 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....+++++..+|+++++|||+.+ +|+...+...+.+++...+
T Consensus 128 ~G~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 174 (201)
T cd03231 128 AGQQRRVALARLLLSGRPLWILDEPTTA-----LDKAGVARFAEAMAGHCAR 174 (201)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHhC
Confidence 4456668899999999999999999999 9999999999999876543
No 383
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=2.9e-08 Score=74.75 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 134 ~G~~qr~~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 179 (220)
T cd03265 134 GGMRRRLEIARSLVHRPEVLFLDEPTIG-----LDPQTRAHVWEYIEKLKE 179 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHHHHHHHHHHHHH
Confidence 3445567899999999999999999999 999999999999988754
No 384
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=4.8e-08 Score=73.07 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 133 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 178 (211)
T cd03264 133 GGMRRRVGIAQALVGDPSILIVDEPTAG-----LDPEERIRFRNLLSELGE 178 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHhC
Confidence 4456668899999999999999999999 999999999999988754
No 385
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.87 E-value=1.7e-08 Score=72.33 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....+++++..+|+++++|||..+ +|....+...+.++++..
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~~~ 130 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAA-----LTPAEVERLFKVIRRLRA 130 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHH
Confidence 3445557899999999999999999999 999999999999988754
No 386
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.86 E-value=8.7e-08 Score=73.88 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..+
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~l~~~ 201 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSA-----LDPELVGEVLRIMQQLAEE 201 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhc
Confidence 4456668899999999999999999999 9999999999999887543
No 387
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.86 E-value=4.9e-08 Score=70.14 Aligned_cols=53 Identities=9% Similarity=0.049 Sum_probs=37.2
Q ss_pred CEEEEEeCCCCCccc-ccHHHH---HHHHhcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593 119 PIVLCGNKVDVKNRQ-VKAKQV---TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 119 p~i~v~nk~D~~~~~-~~~~~~---~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l 171 (221)
.-++|+||.|+...- ...+.. ...-....+++++|.++|.|+++++.++....
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 347999999996532 212221 22234578999999999999999988877643
No 388
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.86 E-value=2.6e-08 Score=80.18 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-++....|++++..+|+++++|||.++ +|.....++.+.++++..+
T Consensus 140 gGq~QRvaLARAL~~~P~llLLDEP~s~-----LD~~~r~~l~~~l~~l~~~ 186 (362)
T TIGR03258 140 GGMQQRIAIARAIAIEPDVLLLDEPLSA-----LDANIRANMREEIAALHEE 186 (362)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCcccc-----CCHHHHHHHHHHHHHHHHh
Confidence 4456668899999999999999999999 9999999999999887654
No 389
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.86 E-value=2.4e-08 Score=76.31 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....|++++..+|+++++|||+.+ +|+.......+.++++..
T Consensus 118 gGe~qrv~iaraL~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 163 (246)
T cd03237 118 GGELQRVAIAACLSKDADIYLLDEPSAY-----LDVEQRLMASKVIRRFAE 163 (246)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4445668899999999999999999999 999999999999988753
No 390
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.85 E-value=5.3e-08 Score=72.96 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....|++++..+|+++++|||+++ +|+...+...+.++++..+
T Consensus 139 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~ 185 (214)
T cd03292 139 GGEQQRVAIARAIVNSPTILIADEPTGN-----LDPDTTWEIMNLLKKINKA 185 (214)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHc
Confidence 4456668899999999999999999999 9999999999999887543
No 391
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=2.4e-08 Score=77.57 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|........+.++++..+
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~ 185 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAG-----LDPAGRTQMIAIIRRIVAQ 185 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence 3445557899999999999999999999 9999999999999887543
No 392
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=3.3e-08 Score=79.27 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++....|++++..+|+++++|||.++ +|...+.+....++++..
T Consensus 139 gGq~QRVaLARaL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 184 (351)
T PRK11432 139 GGQQQRVALARALILKPKVLLFDEPLSN-----LDANLRRSMREKIRELQQ 184 (351)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668999999999999999999999 999999999999988754
No 393
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=2.5e-08 Score=80.23 Aligned_cols=46 Identities=13% Similarity=0.253 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|-+.....|++++..+|+++++|||.++ +|...+..+.+.++++..
T Consensus 137 gGq~QRvalARAL~~~P~llLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 137 GGQRQRVAMGRAIVREPAVFLFDEPLSN-----LDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4556668899999999999999999999 999999999999988754
No 394
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.85 E-value=1e-07 Score=71.42 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 133 ~G~~qr~~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03301 133 GGQRQRVALGRAIVREPKVFLMDEPLSN-----LDAKLRVQMRAELKRLQQ 178 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4445567899999999999999999999 999999999999988754
No 395
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.85 E-value=1.1e-07 Score=71.82 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||..+ +|....+...+.++++..+
T Consensus 127 ~G~~~rv~laral~~~p~llllDEP~~~-----LD~~~~~~l~~~L~~~~~~ 173 (223)
T TIGR03740 127 LGMKQRLGIAIALLNHPKLLILDEPTNG-----LDPIGIQELRELIRSFPEQ 173 (223)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCccC-----CCHHHHHHHHHHHHHHHHC
Confidence 4445567899999999999999999999 9999999999999887543
No 396
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.84 E-value=6.9e-08 Score=72.03 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..+
T Consensus 129 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 175 (208)
T cd03268 129 LGMKQRLGIALALLGNPDLLILDEPTNG-----LDPDGIKELRELILSLRDQ 175 (208)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence 3445567899999999999999999999 9999999999999887543
No 397
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.84 E-value=8.8e-08 Score=73.52 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|....+...+.++++..+
T Consensus 147 ~Gq~qrv~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~ 193 (250)
T PRK11264 147 GGQQQRVAIARALAMRPEVILFDEPTSA-----LDPELVGEVLNTIRQLAQE 193 (250)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhc
Confidence 3445557799999999999999999999 9999999999999887543
No 398
>PRK10908 cell division protein FtsE; Provisional
Probab=98.84 E-value=7.9e-08 Score=72.47 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 185 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGN-----LDDALSEGILRLFEEFNR 185 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 399
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=8.4e-08 Score=71.24 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||..+ +|....+...+.++++..
T Consensus 121 ~Ge~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~ 166 (202)
T cd03233 121 GGERKRVSIAEALVSRASVLCWDNSTRG-----LDSSTALEILKCIRTMAD 166 (202)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence 3445567899999999999999999999 999999999999998754
No 400
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.84 E-value=1.1e-07 Score=72.26 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 156 ~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 201 (236)
T cd03267 156 LGQRMRAEIAAALLHEPEILFLDEPTIG-----LDVVAQENIRNFLKEYNR 201 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCC-----CCHHHHHHHHHHHHHHHh
Confidence 3445557799999999999999999999 999999999999998754
No 401
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.84 E-value=5.1e-08 Score=73.27 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+.+.+.++++..
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~-----LD~~~~~~l~~~l~~~~~ 188 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGN-----LDSETGKEVMELLRELNK 188 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4455667899999999999999999999 999999999999998754
No 402
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.84 E-value=3e-08 Score=80.14 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
|.+.....|++++..+|+++++|||.++ +|...+..+...++++..+
T Consensus 147 gGq~QRVaLARaL~~~P~llLLDEP~s~-----LD~~~r~~l~~~L~~l~~~ 193 (375)
T PRK09452 147 GGQQQRVAIARAVVNKPKVLLLDESLSA-----LDYKLRKQMQNELKALQRK 193 (375)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHh
Confidence 4456668899999999999999999999 9999999999999887553
No 403
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.83 E-value=4.8e-09 Score=74.38 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
|.++...+|++++...|.+.+.|||++. +|++-..+.+..+++++++.
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSA-----LDPElVgEVLkv~~~LAeEg 202 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSA-----LDPELVGEVLKVMQDLAEEG 202 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCccc-----CCHHHHHHHHHHHHHHHHhC
Confidence 4456668999999999999999999999 99999999999999988764
No 404
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=6.4e-08 Score=77.58 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+++ +|+.....+.+.++++..
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~-----LD~~~~~~l~~~L~~l~~ 188 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSA-----LDPATTRSILELLKDINR 188 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4455668899999999999999999999 999999999999998754
No 405
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=6.5e-08 Score=73.47 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||..+ +|+.......+.++++..
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~-----LD~~~~~~l~~~l~~~~~ 188 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSA-----LDPETTQSILALLRDINR 188 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 406
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=4.2e-08 Score=71.36 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....|++++..+|+++++|||..+ +|........+.++++..+
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~-----LD~~~~~~l~~~l~~~~~~ 149 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSA-----LDPITRREVRALLKSLQAQ 149 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 3445567899999999999999999999 9999999999999887654
No 407
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.83 E-value=7.6e-08 Score=75.86 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=42.2
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+...++. +.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 131 ~~~LS~G--~~qrv~la~al~~~p~lliLDEPt~g-----LD~~~~~~l~~~l~~~~~ 181 (301)
T TIGR03522 131 IGQLSKG--YRQRVGLAQALIHDPKVLILDEPTTG-----LDPNQLVEIRNVIKNIGK 181 (301)
T ss_pred hhhCCHH--HHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHhcC
Confidence 3444444 45557899999999999999999999 999999999999988753
No 408
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.83 E-value=1.1e-07 Score=71.21 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||..+ +|+...+...+.++++..+
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 186 (214)
T PRK13543 140 AGQKKRLALARLWLSPAPLWLLDEPYAN-----LDLEGITLVNRMISAHLRG 186 (214)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhC
Confidence 4456668899999999999999999999 9999999999999876544
No 409
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=2.2e-08 Score=77.81 Aligned_cols=47 Identities=23% Similarity=0.211 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|+....+..+.++++..+
T Consensus 141 gG~~qrv~laraL~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 187 (274)
T PRK13647 141 YGQKKRVAIAGVLAMDPDVIVLDEPMAY-----LDPRGQETLMEILDRLHNQ 187 (274)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHHC
Confidence 4456668899999999999999999999 9999999999999987643
No 410
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=3.7e-08 Score=79.74 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.++....|++++..+|+++++|||.++ +|...+..+.+.++++..
T Consensus 152 gGq~QRVaLARAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 152 GGQRQRVALARSLAKRPKLLLLDEPMGA-----LDKKLRDRMQLEVVDILE 197 (377)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 5556678999999999999999999999 999999998888876643
No 411
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.83 E-value=3.1e-07 Score=72.13 Aligned_cols=137 Identities=18% Similarity=0.307 Sum_probs=80.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCc----------ccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc---ccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGL 78 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---~~~ 78 (221)
..++|+++|++|+|||||+|.|+....... ..++..+......+.-++..+.+.++||||--.+ ...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 469999999999999999999776533222 1233333444444455667789999999992221 111
Q ss_pred c-----------ccc------------c--cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593 79 R-----------DGY------------Y--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (221)
Q Consensus 79 ~-----------~~~------------~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~ 133 (221)
| ..| + ...+++++++..+.. +...+. +..+...+...-+|.|+.|.|.-...
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~D--Ie~Mk~ls~~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLD--IEAMKRLSKRVNLIPVIAKADTLTDD 178 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHH--HHHHHHHhcccCeeeeeeccccCCHH
Confidence 1 011 1 145788888775532 333222 22333444567788899999975422
Q ss_pred ccH----HHHHHHHhcCceEEE
Q 027593 134 VKA----KQVTFHRKKNLQYYE 151 (221)
Q Consensus 134 ~~~----~~~~~~~~~~~~~~~ 151 (221)
... ...+....+++++|.
T Consensus 179 El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 179 ELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHhCCceeC
Confidence 221 122445566777665
No 412
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.82 E-value=1.4e-08 Score=78.41 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=38.0
Q ss_pred CCCEEEEEeCCCCCccc--ccHHHHHHHHh--cCceEEEeecCCCCChHHHHHHHHHH
Q 027593 117 NIPIVLCGNKVDVKNRQ--VKAKQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 117 ~~p~i~v~nk~D~~~~~--~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
..+.++++||+|+.... ......+.... ...+++.+|+++|.|++.+..+|...
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999996521 11122222222 36789999999999999999988763
No 413
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.82 E-value=8.2e-09 Score=75.93 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=43.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCC-------CcccCCceeEeeeEEEEecCeEEEEEEEeCCC
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (221)
..+++++|.+|+|||||+|+++..... ......+|+|.....+.+.. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 468999999999999999997754321 23455678888887777653 579999999
No 414
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=2.9e-08 Score=77.70 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|+.....+.+.++++..+
T Consensus 147 gGqkqrvaiA~aL~~~p~illLDEPt~g-----LD~~~~~~l~~~l~~l~~~ 193 (288)
T PRK13643 147 GGQMRRVAIAGILAMEPEVLVLDEPTAG-----LDPKARIEMMQLFESIHQS 193 (288)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHC
Confidence 4456668899999999999999999999 9999999999999887543
No 415
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.82 E-value=3e-08 Score=74.24 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....|++++..+|+++++|||+.+ +|+...+...+.++++..+
T Consensus 135 gG~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 181 (213)
T cd03235 135 GGQQQRVLLARALVQDPDLLLLDEPFAG-----VDPKTQEDIYELLRELRRE 181 (213)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhc
Confidence 4445567899999999999999999999 9999999999999987543
No 416
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.82 E-value=6.6e-08 Score=72.83 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|....+...+.++++..
T Consensus 144 ~G~~qrv~laral~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~ 189 (221)
T TIGR02211 144 GGERQRVAIARALVNQPSLVLADEPTGN-----LDNNNAKIIFDLMLELNR 189 (221)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence 4445567899999999999999999999 999999999999988753
No 417
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.82 E-value=1.4e-08 Score=82.64 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-++....|++++..+|+++++|||+.+ +|+..+.+..+.++++..+
T Consensus 142 gGerQRv~IArAL~~~P~iLLLDEPtsg-----LD~~~~~~l~~lL~~l~~~ 188 (402)
T PRK09536 142 GGERQRVLLARALAQATPVLLLDEPTAS-----LDINHQVRTLELVRRLVDD 188 (402)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHhc
Confidence 4556668899999999999999999999 9999999999999988643
No 418
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.82 E-value=4.1e-08 Score=79.42 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-++....|++++..+|+++++|||.++ +|....+...+.++++..
T Consensus 136 gGq~QRvaLAraL~~~P~lLLLDEPts~-----LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSN-----LDAALRVQMRIEISRLHK 181 (369)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999888754
No 419
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=1e-07 Score=72.34 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+.......+.++++..
T Consensus 148 gG~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~ 193 (233)
T PRK11629 148 GGERQRVAIARALVNNPRLVLADEPTGN-----LDARNADSIFQLLGELNR 193 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988753
No 420
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=4e-08 Score=76.56 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 140 ~Gq~qrl~laraL~~~p~llilDEPt~g-----LD~~~~~~l~~~l~~l~~ 185 (277)
T PRK13652 140 GGEKKRVAIAGVIAMEPQVLVLDEPTAG-----LDPQGVKELIDFLNDLPE 185 (277)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 421
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=3.2e-08 Score=77.47 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....|++++..+|+++++|||+.+ +|+.......+.++++..+
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~g-----LD~~~~~~l~~~l~~l~~~ 194 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAG-----LDPEGRKEMMQLFKDYQKA 194 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHhC
Confidence 4456668899999999999999999999 9999999999999887543
No 422
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.81 E-value=9.4e-08 Score=71.56 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++...
T Consensus 138 ~G~~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~~ 184 (213)
T cd03262 138 GGQQQRVAIARALAMNPKVMLFDEPTSA-----LDPELVGEVLDVMKDLAEE 184 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHc
Confidence 4455567899999999999999999999 9999999999999987543
No 423
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.81 E-value=1.9e-08 Score=72.75 Aligned_cols=58 Identities=22% Similarity=0.212 Sum_probs=44.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (221)
...++++++|.+|+|||||+|+++...+. ......++|.....+.+. ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34589999999999999999997765543 445666777777666554 45789999994
No 424
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.81 E-value=2e-08 Score=73.21 Aligned_cols=46 Identities=28% Similarity=0.356 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....|++++..+|+++++|||+.+ +|....+...+.++++..
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~-----LD~~~~~~~~~~l~~~~~ 145 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSH-----LDIAHQIELLELLRRLAR 145 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHH
Confidence 3345557799999999999999999999 999999999999988754
No 425
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.81 E-value=3.8e-08 Score=78.65 Aligned_cols=52 Identities=25% Similarity=0.238 Sum_probs=43.8
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.+..+|. +.....|++++..+|+++++|||+++ +|+.....+.+.++++..+
T Consensus 138 ~~~LSgG--qkQRV~IARAL~~~P~iLLlDEPts~-----LD~~t~~~i~~lL~~l~~~ 189 (343)
T TIGR02314 138 PSNLSGG--QKQRVAIARALASNPKVLLCDEATSA-----LDPATTQSILELLKEINRR 189 (343)
T ss_pred hhhCCHH--HHHHHHHHHHHHhCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 3445544 45558899999999999999999999 9999999999999988653
No 426
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.80 E-value=1.6e-07 Score=75.63 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.++....|++++..+|+++++|||..+ +|+...+...+.++++..+
T Consensus 134 gGqkqRvalAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~L~~l~~~ 180 (354)
T TIGR02142 134 GGEKQRVAIGRALLSSPRLLLMDEPLAA-----LDDPRKYEILPYLERLHAE 180 (354)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCcC-----CCHHHHHHHHHHHHHHHHh
Confidence 4556668899999999999999999999 9999999999999987543
No 427
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.80 E-value=8.9e-08 Score=72.87 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|....+...+.++++..
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 191 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAG-----LNPEETEELAELIRELRE 191 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4445567899999999999999999999 999999999999988754
No 428
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.80 E-value=8.7e-08 Score=73.77 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+.+.....|++++..+|+++++|||+.+ +|+.....+.+.++++.
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~-----LD~~~~~~l~~~L~~~~ 180 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGA-----LDALTRIEMQDLIESLW 180 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHH
Confidence 4455667899999999999999999999 99999999999998764
No 429
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1.3e-07 Score=70.95 Aligned_cols=46 Identities=35% Similarity=0.365 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|....+...+.++++..
T Consensus 134 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 179 (214)
T cd03297 134 GGEKQRVALARALAAQPELLLLDEPFSA-----LDRALRLQLLPELKQIKK 179 (214)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 3455667899999999999999999999 999999999999988754
No 430
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=1.5e-07 Score=72.43 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+.+.....|++++..+|+++++|||+.+ +|+.......+.++++.
T Consensus 131 gGq~qrl~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~L~~~~ 175 (255)
T PRK11248 131 GGQRQRVGIARALAANPQLLLLDEPFGA-----LDAFTREQMQTLLLKLW 175 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHH
Confidence 4445567799999999999999999999 99999999999998873
No 431
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.79 E-value=6.1e-08 Score=74.96 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.......|+-++..+|++++.|||+.. +|...+.++++.++++..
T Consensus 156 GGMrQRV~IAmala~~P~LlIADEPTTA-----LDvt~QaqIl~Ll~~l~~ 201 (316)
T COG0444 156 GGMRQRVMIAMALALNPKLLIADEPTTA-----LDVTVQAQILDLLKELQR 201 (316)
T ss_pred CcHHHHHHHHHHHhCCCCEEEeCCCcch-----hhHHHHHHHHHHHHHHHH
Confidence 4445557799999999999999999999 999999999999999876
No 432
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=1.5e-08 Score=79.23 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||..+ +|+.......+.++++..
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~l~~ 193 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAG-----LDPQSKRQVMRLLKSLQT 193 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999998753
No 433
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.79 E-value=3.5e-08 Score=71.43 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|+.......+.++++..+
T Consensus 99 ~G~~qrv~la~al~~~p~~lllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 145 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSH-----LDVEGERALNQAIAALKAA 145 (173)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccc-----cCHHHHHHHHHHHHHHHhC
Confidence 3445668899999999999999999999 9999999999999887543
No 434
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.79 E-value=1.6e-07 Score=69.71 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||..+ +|....+...+.++++..
T Consensus 130 ~G~~~rv~laral~~~p~~lilDEP~~~-----LD~~~~~~l~~~l~~~~~ 175 (200)
T PRK13540 130 SGQKRQVALLRLWMSKAKLWLLDEPLVA-----LDELSLLTIITKIQEHRA 175 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----cCHHHHHHHHHHHHHHHH
Confidence 4445668899999999999999999999 999999999999998643
No 435
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.79 E-value=1.2e-07 Score=72.39 Aligned_cols=46 Identities=26% Similarity=0.326 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 138 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~L~~~~~ 183 (242)
T cd03295 138 GGQQQRVGVARALAADPPLLLMDEPFGA-----LDPITRDQLQEEFKRLQQ 183 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988753
No 436
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=1e-07 Score=72.81 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|+.......+.++++..+
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 186 (241)
T PRK10895 140 GGERRRVEIARALAANPKFILLDEPFAG-----VDPISVIDIKRIIEHLRDS 186 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHhc
Confidence 4445567899999999999999999999 9999999998888876543
No 437
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.79 E-value=3.6e-08 Score=69.20 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
|.+....+|++.+.-.|.++++|||++. +|+.+.+.+.+.+-..-
T Consensus 136 GGE~QriAliR~Lq~~P~ILLLDE~TsA-----LD~~nkr~ie~mi~~~v 180 (223)
T COG4619 136 GGEKQRIALIRNLQFMPKILLLDEITSA-----LDESNKRNIEEMIHRYV 180 (223)
T ss_pred chHHHHHHHHHHhhcCCceEEecCchhh-----cChhhHHHHHHHHHHHh
Confidence 5556668899999999999999999999 99999998888887653
No 438
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.79 E-value=2.5e-08 Score=75.46 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+.......+.++++..
T Consensus 148 ~G~~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~ 193 (228)
T cd03257 148 GGQRQRVAIARALALNPKLLIADEPTSA-----LDVSVQAQILDLLKKLQE 193 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 439
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.79 E-value=5.4e-08 Score=78.27 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|-++....|++++..+|+++++|||.++ +|+...+.+.+.+.++..
T Consensus 132 GGq~QRV~lARAL~~~p~iLLlDEP~sa-----LD~~~r~~l~~~l~~l~~ 177 (363)
T TIGR01186 132 GGMQQRVGLARALAAEPDILLMDEAFSA-----LDPLIRDSMQDELKKLQA 177 (363)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4556668899999999999999999999 999999999999988754
No 440
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.78 E-value=7.5e-08 Score=80.73 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=47.8
Q ss_pred HHhcCceE--EEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 142 HRKKNLQY--YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 142 ~~~~~~~~--~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
...++++- -.++..+ |..+....|++++...|.++++|||+.+ +|.+...+++..+++...
T Consensus 139 L~gLg~~~~~~~~~~LS--GG~r~Rv~LA~aL~~~pDlLLLDEPTNH-----LD~~~i~WLe~~L~~~~g 201 (530)
T COG0488 139 LLGLGFPDEDRPVSSLS--GGWRRRVALARALLEEPDLLLLDEPTNH-----LDLESIEWLEDYLKRYPG 201 (530)
T ss_pred HhcCCCCcccCchhhcC--HHHHHHHHHHHHHhcCCCEEEEcCCCcc-----cCHHHHHHHHHHHHhCCC
Confidence 33444443 3444444 5567779999999999999999999999 999999999999986543
No 441
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=3e-08 Score=77.73 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....|++++..+|+++++|||+++ +|+.....+.+.++++..
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~-----LD~~~~~~l~~~L~~l~~ 193 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAG-----LDPKGRKEMMEMFYKLHK 193 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 442
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=3.7e-08 Score=76.96 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||..+ +|+.......+.++++..
T Consensus 144 ~G~~qrl~laraL~~~p~lLilDEPt~g-----LD~~~~~~l~~~l~~l~~ 189 (283)
T PRK13636 144 FGQKKRVAIAGVLVMEPKVLVLDEPTAG-----LDPMGVSEIMKLLVEMQK 189 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHH
Confidence 4455568899999999999999999999 999999999999988754
No 443
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.78 E-value=3e-08 Score=77.57 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=45.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (221)
...++|+++|.+|+|||||+|++.. .......+.+|+|.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~-~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAG-KKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhc-CCccccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 4568999999999999999999654 44445567888888876655542 47899999974
No 444
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.78 E-value=1.2e-08 Score=86.54 Aligned_cols=45 Identities=27% Similarity=0.339 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
|.+..+-.|+|++.++|+++++|||++. +|.+..+...+.+.+..
T Consensus 473 GGQrQRiaiARall~~~~iliLDE~TSa-----LD~~te~~I~~~l~~~~ 517 (529)
T TIGR02868 473 GGERQRLALARALLADAPILLLDEPTEH-----LDAGTESELLEDLLAAL 517 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHhc
Confidence 4466678899999999999999999999 99999999999998764
No 445
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.78 E-value=2.3e-08 Score=75.62 Aligned_cols=47 Identities=26% Similarity=0.378 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+++ +|+...+...+.++++..+
T Consensus 144 gG~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 190 (227)
T cd03260 144 GGQQQRLCLARALANEPEVLLLDEPTSA-----LDPISTAKIEELIAELKKE 190 (227)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHhhC
Confidence 4445568899999999999999999999 9999999999999987554
No 446
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.78 E-value=1.1e-07 Score=76.96 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-++....|++++..+|+++++|||.++ +|+....++.+.+.++..
T Consensus 167 gGq~QRV~LARALa~~P~ILLlDEPts~-----LD~~~r~~l~~~L~~l~~ 212 (382)
T TIGR03415 167 GGMQQRVGLARAFAMDADILLMDEPFSA-----LDPLIRTQLQDELLELQA 212 (382)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 447
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.78 E-value=5.6e-08 Score=73.27 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|........+.++++..
T Consensus 135 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 180 (222)
T cd03224 135 GGEQQMLAIARALMSRPKLLLLDEPSEG-----LAPKIVEEIFEAIRELRD 180 (222)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 3445567899999999999999999999 999999999999988754
No 448
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.77 E-value=6.9e-08 Score=69.86 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhCC--CCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 160 FEKPFLYLARKLAGD--PNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 160 i~~~~~~l~~~l~~~--~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-+.....|++++..+ |+++++|||..+ +|....+.+.+.++++..
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~-----LD~~~~~~l~~~l~~~~~ 137 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTG-----LHQQDINQLLEVIKGLID 137 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHh
Confidence 345567799999999 999999999999 999999999999988753
No 449
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.77 E-value=4.3e-07 Score=67.76 Aligned_cols=88 Identities=9% Similarity=0.039 Sum_probs=65.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc-------cccccccC
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIH 85 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~ 85 (221)
..+|+++|-|.+|||||+..+.. ..........+|...+...+..++..+++.|.||.....+ ..-...+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~--T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITS--THSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhc--chhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 57999999999999999998543 2233445566777777777777888999999999554322 23344678
Q ss_pred ccEEEEEEeCCChhhhc
Q 027593 86 GQCAIIMFDVTARLTYK 102 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~ 102 (221)
+|.+++|.|++-.+...
T Consensus 140 aDlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQR 156 (364)
T ss_pred ccEEEEEecCCcchhHH
Confidence 89999999998765543
No 450
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.77 E-value=1.8e-07 Score=72.55 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|....+...+.++++..
T Consensus 146 gGq~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~ 191 (269)
T PRK11831 146 GGMARRAALARAIALEPDLIMFDEPFVG-----QDPITMGVLVKLISELNS 191 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence 4455667899999999999999999999 999999999999988754
No 451
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.77 E-value=6.5e-08 Score=74.44 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|....+...+.++++..
T Consensus 143 ~Gq~qrv~laral~~~p~lLlLDEPt~~-----LD~~~~~~l~~~L~~~~~ 188 (254)
T PRK10418 143 GGMLQRMMIALALLCEAPFIIADEPTTD-----LDVVAQARILDLLESIVQ 188 (254)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----cCHHHHHHHHHHHHHHHH
Confidence 4455667899999999999999999999 999999999999988643
No 452
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.77 E-value=1.1e-07 Score=70.96 Aligned_cols=47 Identities=26% Similarity=0.266 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||..+ +|....+...+.++++..+
T Consensus 130 ~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 176 (207)
T PRK13539 130 AGQKRRVALARLLVSNRPIWILDEPTAA-----LDAAAVALFAELIRAHLAQ 176 (207)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence 4455668899999999999999999999 9999999999999886544
No 453
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=1.2e-07 Score=75.57 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|-+.....|++++..+|+++++|||+.+ +|...+.+..+.++++..
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~-----LD~~~~~~il~lL~~l~~ 201 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTA-----LDVTIQAQIIELLLELQQ 201 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence 4445557899999999999999999999 999999999999998754
No 454
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.77 E-value=4e-08 Score=74.41 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
|.++...+|.+++...|+++++|||.+. +|....++++-.++.++.+
T Consensus 131 GGEkQRVAIGRALLt~P~LLLmDEPLaS-----LD~~RK~EilpylERL~~e 177 (352)
T COG4148 131 GGEKQRVAIGRALLTAPELLLMDEPLAS-----LDLPRKREILPYLERLRDE 177 (352)
T ss_pred cchhhHHHHHHHHhcCCCeeeecCchhh-----cccchhhHHHHHHHHHHHh
Confidence 4456669999999999999999999999 9999999999999988765
No 455
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.77 E-value=1.1e-07 Score=71.75 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 198 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTAS-----LDAANRQVVVELIAEAKAR 198 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHhc
Confidence 4456668899999999999999999999 9999999999999887544
No 456
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=2.8e-08 Score=77.89 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~-----LD~~~~~~l~~~l~~~~~ 198 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGG-----LDPKGEEDFINLFERLNK 198 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4445567899999999999999999999 999999999999887743
No 457
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.77 E-value=1.9e-07 Score=70.76 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 117 gG~~qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~~~~ 162 (230)
T TIGR01184 117 GGMKQRVAIARALSIRPKVLLLDEPFGA-----LDALTRGNLQEELMQIWE 162 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCcC-----CCHHHHHHHHHHHHHHHH
Confidence 4445567899999999999999999999 999999999999988654
No 458
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=4.8e-08 Score=75.96 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+.+ +|+.......+.++++..+
T Consensus 139 ~G~~qrv~laral~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~l~~~ 185 (274)
T PRK13644 139 GGQGQCVALAGILTMEPECLIFDEVTSM-----LDPDSGIAVLERIKKLHEK 185 (274)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhC
Confidence 4456668899999999999999999999 9999999999999887543
No 459
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=3.4e-08 Score=75.47 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+.......+.++++..
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~-----LD~~~~~~l~~~l~~~~~ 189 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAA-----LDPEITAQIVSIIRELAE 189 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 460
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.76 E-value=2.5e-08 Score=77.55 Aligned_cols=59 Identities=22% Similarity=0.138 Sum_probs=44.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (221)
.+.++++++|.+|+|||||+|++.. .........+|+|.....+.+.. .+.++||||..
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~-~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~~ 174 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAG-KKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGIL 174 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhC-CCccccCCCCCeecceEEEEeCC---CEEEEECCCcc
Confidence 3568999999999999999999654 33344566778887776655532 57899999974
No 461
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=1.4e-07 Score=72.68 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||..+ +|+...+...+.+.++..
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~L~~~~~ 201 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAG-----LNPKETKELDELIAELRN 201 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHHHHHHHHHHHHh
Confidence 4445668899999999999999999999 999999999999988754
No 462
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=9.6e-08 Score=74.10 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|....+.+.+.+.++..
T Consensus 163 ~Gq~qrv~lAral~~~p~illLDEPt~~-----LD~~~~~~l~~~l~~~~~ 208 (269)
T cd03294 163 GGMQQRVGLARALAVDPDILLMDEAFSA-----LDPLIRREMQDELLRLQA 208 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988743
No 463
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=3.2e-08 Score=77.16 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+.....+.+.++++..
T Consensus 143 ~G~~qrv~laral~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13635 143 GGQKQRVAIAGVLALQPDIIILDEATSM-----LDPRGRREVLETVRQLKE 188 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 464
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.76 E-value=9.5e-08 Score=76.79 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-++....|++++..+|+++++|||.++ +|........+.++++..+
T Consensus 139 gGq~QRvalArAL~~~P~llLLDEP~s~-----LD~~~r~~l~~~L~~l~~~ 185 (353)
T PRK10851 139 GGQKQRVALARALAVEPQILLLDEPFGA-----LDAQVRKELRRWLRQLHEE 185 (353)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence 4456668899999999999999999999 9999999999999887653
No 465
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=1.2e-07 Score=72.26 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 139 ~G~~qrl~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~ 184 (239)
T cd03296 139 GGQRQRVALARALAVEPKVLLLDEPFGA-----LDAKVRKELRRWLRRLHD 184 (239)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4455567899999999999999999999 999999999999988754
No 466
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.76 E-value=2.6e-07 Score=68.22 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+.+.....|++++..+|+++++|||..+ +|+...+...+.+++..
T Consensus 126 ~G~~~rl~la~al~~~p~~lllDEP~~~-----LD~~~~~~l~~~l~~~~ 170 (195)
T PRK13541 126 SGMQKIVAIARLIACQSDLWLLDEVETN-----LSKENRDLLNNLIVMKA 170 (195)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHH
Confidence 3345558899999999999999999999 99999999988887543
No 467
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.76 E-value=5.1e-08 Score=73.88 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|....+...+.++++..
T Consensus 128 ~G~~qrv~laral~~~p~vllLDEPt~~-----LD~~~~~~l~~~l~~~~~ 173 (230)
T TIGR02770 128 GGMLQRVMIALALLLEPPFLIADEPTTD-----LDVVNQARVLKLLRELRQ 173 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----cCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 468
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=1.8e-07 Score=69.92 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||..+ +|........+.++++..
T Consensus 131 ~G~~qrv~ia~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~ 176 (211)
T cd03298 131 GGERQRVALARVLVRDKPVLLLDEPFAA-----LDPALRAEMLDLVLDLHA 176 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988753
No 469
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.76 E-value=1.6e-07 Score=70.75 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||..+ +|........+.++++..
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~~~ 189 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAA-----LDSKSGRDVVELMQKLAR 189 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988753
No 470
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.75 E-value=1.7e-08 Score=75.45 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=41.9
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.+.++|.. +....++|+|.-.|++.++|||.+. +|+-.+....+.+.++..
T Consensus 133 P~eLSGGQ--QQRVGv~RALAadP~ilLMDEPFgA-----LDpI~R~~lQ~e~~~lq~ 183 (309)
T COG1125 133 PHELSGGQ--QQRVGVARALAADPPILLMDEPFGA-----LDPITRKQLQEEIKELQK 183 (309)
T ss_pred chhcCcch--hhHHHHHHHHhcCCCeEeecCCccc-----cChhhHHHHHHHHHHHHH
Confidence 45555544 5568999999999999999999999 999998888888877644
No 471
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.75 E-value=1.5e-07 Score=78.93 Aligned_cols=50 Identities=28% Similarity=0.349 Sum_probs=41.9
Q ss_pred EeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHh
Q 027593 151 EISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA 207 (221)
Q Consensus 151 ~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~ 207 (221)
.+..++ |.++....+++.+...|.++++|||+.+ +|.+....+.+.+...
T Consensus 436 ~v~~LS--GGEk~Rl~La~ll~~~pNvLiLDEPTNh-----LDi~s~~aLe~aL~~f 485 (530)
T COG0488 436 PVGVLS--GGEKARLLLAKLLLQPPNLLLLDEPTNH-----LDIESLEALEEALLDF 485 (530)
T ss_pred chhhcC--HhHHHHHHHHHHhccCCCEEEEcCCCcc-----CCHHHHHHHHHHHHhC
Confidence 344444 5556778899999999999999999999 9999999999988765
No 472
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=3.3e-08 Score=77.09 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++...|+++++|||+.+ +|+...+...+.++++..
T Consensus 143 gGq~qrv~lAral~~~p~lLlLDEPt~~-----LD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13650 143 GGQKQRVAIAGAVAMRPKIIILDEATSM-----LDPEGRLELIKTIKGIRD 188 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 473
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=4.8e-08 Score=71.95 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....|++++..+|+++++|||..+ +|....+...+.++++..
T Consensus 111 gGe~qrv~la~al~~~p~vlllDEP~~~-----LD~~~~~~l~~~l~~~~~ 156 (192)
T cd03232 111 VEQRKRLTIGVELAAKPSILFLDEPTSG-----LDSQAAYNIVRFLKKLAD 156 (192)
T ss_pred HHHhHHHHHHHHHhcCCcEEEEeCCCcC-----CCHHHHHHHHHHHHHHHH
Confidence 3345557899999999999999999999 999999999999988754
No 474
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.74 E-value=7.1e-08 Score=79.39 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP 213 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (221)
.-++.+.+|++++..+.++.++|||++. +...+.+.+.+.++++..+.++
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaa-----Lt~~E~~~Lf~~ir~Lk~~Gv~ 197 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAA-----LTVKETERLFDLIRRLKAQGVA 197 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHhCCCE
Confidence 4477889999999999999999999999 9999999999999999887653
No 475
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.74 E-value=3e-07 Score=70.50 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+.......+.++++..
T Consensus 147 gG~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 192 (247)
T TIGR00972 147 GGQQQRLCIARALAVEPEVLLLDEPTSA-----LDPIATGKIEELIQELKK 192 (247)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHh
Confidence 4456668899999999999999999999 999999999999988754
No 476
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.74 E-value=2.2e-07 Score=66.78 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA 207 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~ 207 (221)
+.+.....|++++..+|+++++|||..+ +|....+...+.++++
T Consensus 94 ~G~~~rv~laral~~~p~~lllDEPt~~-----LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 94 GGEQQRLAFARLLLHKPKFVFLDEATSA-----LDEESEDRLYQLLKEL 137 (166)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccc-----cCHHHHHHHHHHHHHh
Confidence 3456668899999999999999999999 9999999999888875
No 477
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.74 E-value=2.4e-07 Score=70.73 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|........+.++++..
T Consensus 139 ~G~~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~ 184 (240)
T PRK09493 139 GGQQQRVAIARALAVKPKLMLFDEPTSA-----LDPELRHEVLKVMQDLAE 184 (240)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4455668899999999999999999999 999999999999988754
No 478
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.74 E-value=1.8e-07 Score=70.76 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+.......+.++++..
T Consensus 149 ~Ge~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 194 (228)
T PRK10584 149 GGEQQRVALARAFNGRPDVLFADEPTGN-----LDRQTGDKIADLLFSLNR 194 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence 4455667899999999999999999999 999999999999988743
No 479
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.74 E-value=2.7e-07 Score=74.33 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....|++++..+|+++++|||.++ +|....+.+.+.++++..
T Consensus 131 gGq~qRvalaraL~~~p~llLLDEPts~-----LD~~~~~~l~~~L~~l~~ 176 (352)
T PRK11144 131 GGEKQRVAIGRALLTAPELLLMDEPLAS-----LDLPRKRELLPYLERLAR 176 (352)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 480
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.74 E-value=5.6e-08 Score=75.25 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+.......+.++++..
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~-----LD~~~~~~l~~~l~~~~~ 198 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSN-----LDMVLQAVILELLRKLQQ 198 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 481
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.74 E-value=3.8e-07 Score=70.39 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+.......+.++++..
T Consensus 151 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 196 (258)
T PRK14241 151 GGQQQRLCIARAIAVEPDVLLMDEPCSA-----LDPISTLAIEDLINELKQ 196 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHhc
Confidence 4456668899999999999999999999 999999999999988753
No 482
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.73 E-value=9.2e-08 Score=72.49 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.+.++..
T Consensus 134 ~G~~qrv~la~al~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~ 179 (230)
T TIGR03410 134 GGQQQQLAIARALVTRPKLLLLDEPTEG-----IQPSIIKDIGRVIRRLRA 179 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4445568899999999999999999999 999999999999988754
No 483
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=4.2e-07 Score=69.00 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|++.++|||..+ +|........+.++++..
T Consensus 133 ~G~~qrl~laral~~~p~llllDEP~~g-----LD~~~~~~l~~~l~~~~~ 178 (232)
T cd03300 133 GGQQQRVAIARALVNEPKVLLLDEPLGA-----LDLKLRKDMQLELKRLQK 178 (232)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 484
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=2.4e-07 Score=72.33 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....|++++..+|+++++|||+.+ +|+...+...+.++++..+
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~ 194 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAG-----LDPKGRKELMTLFKKLHQS 194 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence 4456667899999999999999999999 9999999999999887543
No 485
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.73 E-value=4.1e-07 Score=68.12 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....|++++..+|+++++|||+.+ +|........+.++++..
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~ 176 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSA-----LDPLLREEMLALVKQLCS 176 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence 4445668899999999999999999999 999999999999988754
No 486
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.73 E-value=3.6e-08 Score=80.45 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=51.2
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhh-------ccHHHHHHHHHhh-----cCCCCEEEEEeCC
Q 027593 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY-------KNVPTWHRDLCRV-----CENIPIVLCGNKV 127 (221)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-------~~~~~~~~~~~~~-----~~~~p~i~v~nk~ 127 (221)
+...+.++|++|+...+..|..++.+++++++|+++++-.-. ..+..-+..+... ..+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 567899999999999999999999999999999998743221 1122222222222 2578999999999
Q ss_pred CC
Q 027593 128 DV 129 (221)
Q Consensus 128 D~ 129 (221)
|+
T Consensus 314 D~ 315 (389)
T PF00503_consen 314 DL 315 (389)
T ss_dssp HH
T ss_pred HH
Confidence 96
No 487
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.73 E-value=1.8e-08 Score=77.58 Aligned_cols=158 Identities=17% Similarity=0.109 Sum_probs=93.1
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEE--EEecCeEEEEEEEeCCCcc--ccccccccc
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCGKIRFYCWDTAGQE--KFGGLRDGY 82 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~g~~--~~~~~~~~~ 82 (221)
.+...+..-|+++|-.++|||||++++......+.. ....|.++.. ...- .+..+.+.||.|.- -...+...|
T Consensus 172 gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~d--rLFATLDpT~h~a~Lp-sg~~vlltDTvGFisdLP~~LvaAF 248 (410)
T KOG0410|consen 172 GREGESSPVIAVVGYTNAGKSTLIKALTKAALYPND--RLFATLDPTLHSAHLP-SGNFVLLTDTVGFISDLPIQLVAAF 248 (410)
T ss_pred ccccCCCceEEEEeecCccHHHHHHHHHhhhcCccc--hhheeccchhhhccCC-CCcEEEEeechhhhhhCcHHHHHHH
Confidence 345566788999999999999999997643333322 2222222221 1111 23566778998832 112222222
Q ss_pred ------ccCccEEEEEEeCCChhhhccHHHHHHHHHhh-cCCCCE----EEEEeCCCCCcccccHHHHHHHHhcCceEEE
Q 027593 83 ------YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPI----VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151 (221)
Q Consensus 83 ------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~----i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 151 (221)
...+|.++-|.|++++..-......+..+.+. .+..|. +-|-||.|........+ . ...+.
T Consensus 249 ~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------~--n~~v~ 320 (410)
T KOG0410|consen 249 QATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------K--NLDVG 320 (410)
T ss_pred HHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc------c--CCccc
Confidence 56889999999999985433333333333322 112232 44567777654332221 1 12567
Q ss_pred eecCCCCChHHHHHHHHHHHhCCC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~ 175 (221)
+|+++|.|.+++...+-.++....
T Consensus 321 isaltgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred cccccCccHHHHHHHHHHHhhhhh
Confidence 899999999999988888776543
No 488
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.73 E-value=1.9e-07 Score=77.44 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.......|+.++..+|++++.|||+.. +|...++++++.++++..
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTa-----LDvt~q~qIL~llk~l~~ 202 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTA-----LDVTTQAQILDLLKDLQR 202 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccc-----cCHHHHHHHHHHHHHHHH
Confidence 5555667899999999999999999999 999999999999998864
No 489
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.73 E-value=7.8e-08 Score=70.70 Aligned_cols=107 Identities=15% Similarity=0.135 Sum_probs=74.0
Q ss_pred ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-HHH-----HhcC--
Q 027593 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFH-----RKKN-- 146 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~~~-----~~~~-- 146 (221)
+...+..++..++++++|+|+++...- |...+.....+.|+++|+||+|+.......... .+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 356667788999999999999875421 222222223478999999999986533322211 222 2222
Q ss_pred -ceEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCC
Q 027593 147 -LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA 186 (221)
Q Consensus 147 -~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~ 186 (221)
..++.+|++++.|+++++..|...+.....+.+.-.|..+
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvG 139 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGATNVG 139 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCC
Confidence 2689999999999999999999988766666676766655
No 490
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=4.3e-07 Score=69.71 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|+...+...+.++++..
T Consensus 149 gG~~qrv~laral~~~p~lllLDEP~~~-----LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14247 149 GGQQQRLCIARALAFQPEVLLADEPTAN-----LDPENTAKIESLFLELKK 194 (250)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHhc
Confidence 4456668899999999999999999999 999999999999988753
No 491
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.72 E-value=3.2e-08 Score=78.41 Aligned_cols=59 Identities=25% Similarity=0.279 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (221)
+.++++|+|.|++|||||||+ +.++......+.+|+|.....+.+..+ +.++||||...
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~-L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii~ 189 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINR-LLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGIIP 189 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHH-HhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcCC
Confidence 458899999999999999999 555555777888899999888877654 88999999553
No 492
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=5.3e-08 Score=74.36 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||..+ +|....+...+.++++..
T Consensus 134 ~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 179 (241)
T PRK14250 134 GGEAQRVSIARTLANNPEVLLLDEPTSA-----LDPTSTEIIEELIVKLKN 179 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4455667899999999999999999999 999999999999988754
No 493
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.72 E-value=5e-08 Score=69.41 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=41.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (221)
...+++++|.+|+|||||+|++.. .....+.++.|++........+ ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~-~~~~~~~~~~~~t~~~~~~~~~---~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKG-RHSASTSPSPGYTKGEQLVKIT---SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC-CCccccCCCCCeeeeeEEEEcC---CCEEEEECcC
Confidence 357899999999999999999664 4445556677776554333332 2689999998
No 494
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=4.2e-07 Score=69.15 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+.+ +|....+...+.++++..
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~g-----LD~~~~~~l~~~l~~~~~ 177 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSA-----LDVRTKEKLREELKKIRK 177 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4556668899999999999999999999 999999999999988654
No 495
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.72 E-value=2.5e-07 Score=70.99 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....|++++..+|+++++|||+.+ +|+.......+.++++..
T Consensus 123 gGq~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~L~~~~~ 168 (251)
T PRK09544 123 GGETQRVLLARALLNRPQLLVLDEPTQG-----VDVNGQVALYDLIDQLRR 168 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHH
Confidence 4455668899999999999999999999 999999999999987654
No 496
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.5e-07 Score=73.12 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....|++++..+|+++++|||..+ +|+...+...+.++++..+
T Consensus 145 gG~~qrv~laraL~~~p~llllDEPt~~-----LD~~~~~~l~~~L~~~~~~ 191 (272)
T PRK15056 145 GGQKKRVFLARAIAQQGQVILLDEPFTG-----VDVKTEARIISLLRELRDE 191 (272)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhC
Confidence 4445668899999999999999999999 9999999999999887544
No 497
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.3e-07 Score=74.34 Aligned_cols=160 Identities=16% Similarity=0.216 Sum_probs=93.4
Q ss_pred CCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCccc-----------------------CCceeEeeeEEEEe--
Q 027593 3 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-----------------------PTIGVEVHPLDFFT-- 57 (221)
Q Consensus 3 ~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~-- 57 (221)
+|.+| ...+++++++|.-.+|||||+-.+..+....... ...|.+.....+..
T Consensus 159 vPd~Q--qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~ 236 (591)
T KOG1143|consen 159 VPDSQ--QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQ 236 (591)
T ss_pred CCCcc--cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhh
Confidence 34444 5668999999999999999999877655532111 01111111111100
Q ss_pred --------cCeEEEEEEEeCCCccccccccccccc--CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027593 58 --------NCGKIRFYCWDTAGQEKFGGLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (221)
Q Consensus 58 --------~~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~ 127 (221)
+...-.++++|.+|+.+|......-+. ..+..++++++........ +.-+..+... ++|+.++++|+
T Consensus 237 ~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL--~iPfFvlvtK~ 313 (591)
T KOG1143|consen 237 NMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL--NIPFFVLVTKM 313 (591)
T ss_pred cccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh--CCCeEEEEEee
Confidence 112235889999999887654433332 3467778888775543321 1122222222 89999999999
Q ss_pred CCCccccc--------------------------HHHH----HHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 128 DVKNRQVK--------------------------AKQV----TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 128 D~~~~~~~--------------------------~~~~----~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
|+..++-. .+.. +.+...-.|.|.+|+.+|+|++.+...|
T Consensus 314 Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 314 DLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred ccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 98654211 1111 2222234689999999999988655433
No 498
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.71 E-value=1.8e-07 Score=74.63 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.+.....|++++..+|+++++|||+.+ +|...+.++.+.++++..
T Consensus 164 gG~~QRv~iArAL~~~P~llilDEPts~-----LD~~~~~~i~~lL~~l~~ 209 (331)
T PRK15079 164 GGQCQRIGIARALILEPKLIICDEPVSA-----LDVSIQAQVVNLLQQLQR 209 (331)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 499
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.5e-08 Score=82.46 Aligned_cols=48 Identities=25% Similarity=0.250 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
|.+.....++|++..+++++++|||+++ +|.++.+.+.+.+.+++.+.
T Consensus 459 gGQ~QRlaLARAll~~~~l~llDEpTA~-----LD~etE~~i~~~l~~l~~~k 506 (559)
T COG4988 459 GGQAQRLALARALLSPASLLLLDEPTAH-----LDAETEQIILQALQELAKQK 506 (559)
T ss_pred HHHHHHHHHHHHhcCCCCEEEecCCccC-----CCHhHHHHHHHHHHHHHhCC
Confidence 4466778999999999999999999999 99999999999999887653
No 500
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=7.6e-07 Score=69.68 Aligned_cols=47 Identities=28% Similarity=0.390 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||..+ +|....+.+.+.++++..+
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~-----LD~~~~~~l~~~L~~~~~~ 229 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASA-----LDPVATSKIEDLIEELAEE 229 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHhcC
Confidence 4455668899999999999999999999 9999999999999887543
Done!