Query 027593
Match_columns 221
No_of_seqs 132 out of 1814
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 20:51:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gj0_A GTP-binding nuclear pro 100.0 3.3E-37 1.1E-41 231.3 20.5 213 6-218 8-220 (221)
2 4dkx_A RAS-related protein RAB 100.0 8.8E-37 3E-41 227.5 17.6 174 1-174 1-177 (216)
3 1x3s_A RAS-related protein RAB 100.0 5.2E-31 1.8E-35 193.5 19.6 172 10-181 12-186 (195)
4 3q3j_B RHO-related GTP-binding 100.0 3.2E-31 1.1E-35 197.8 18.6 169 7-176 21-206 (214)
5 3kkq_A RAS-related protein M-R 100.0 8E-31 2.7E-35 190.7 20.0 168 5-173 10-182 (183)
6 1z2a_A RAS-related protein RAB 100.0 1.3E-30 4.6E-35 186.7 19.6 163 11-173 3-167 (168)
7 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.3E-30 7.8E-35 187.2 20.3 166 10-175 4-176 (177)
8 3tw8_B RAS-related protein RAB 100.0 2.4E-30 8.1E-35 187.6 20.4 164 10-173 6-171 (181)
9 1ek0_A Protein (GTP-binding pr 100.0 1.1E-30 3.8E-35 187.4 17.8 162 11-172 1-168 (170)
10 1r2q_A RAS-related protein RAB 100.0 1.6E-30 5.5E-35 186.5 18.4 163 10-172 3-168 (170)
11 1z08_A RAS-related protein RAB 100.0 2.5E-30 8.6E-35 185.7 19.3 163 11-173 4-169 (170)
12 2hup_A RAS-related protein RAB 100.0 8.3E-31 2.8E-35 193.7 17.0 167 9-175 25-195 (201)
13 3reg_A RHO-like small GTPase; 100.0 4E-30 1.4E-34 188.9 20.3 165 10-175 20-190 (194)
14 1z0j_A RAB-22, RAS-related pro 100.0 3.5E-30 1.2E-34 184.9 19.4 163 10-172 3-168 (170)
15 2efe_B Small GTP-binding prote 100.0 2.9E-30 1E-34 187.3 19.0 166 9-174 8-176 (181)
16 1g16_A RAS-related protein SEC 100.0 2.5E-30 8.5E-35 185.6 18.4 163 12-174 2-166 (170)
17 2gf9_A RAS-related protein RAB 100.0 1.2E-29 4.2E-34 185.5 22.1 164 10-173 19-185 (189)
18 1z0f_A RAB14, member RAS oncog 100.0 4E-30 1.4E-34 186.1 19.2 163 11-173 13-178 (179)
19 2a5j_A RAS-related protein RAB 100.0 6.3E-30 2.2E-34 187.4 20.3 165 9-173 17-184 (191)
20 3tkl_A RAS-related protein RAB 100.0 7.9E-30 2.7E-34 187.3 20.8 165 10-174 13-180 (196)
21 2fg5_A RAB-22B, RAS-related pr 100.0 2.6E-30 8.8E-35 189.7 17.8 164 11-174 21-187 (192)
22 3c5c_A RAS-like protein 12; GD 100.0 4.8E-30 1.6E-34 187.5 19.2 163 9-173 17-186 (187)
23 2ew1_A RAS-related protein RAB 100.0 4.7E-30 1.6E-34 189.6 19.2 163 11-173 24-189 (201)
24 3t5g_A GTP-binding protein RHE 100.0 8E-30 2.7E-34 185.1 20.0 164 11-175 4-171 (181)
25 2hxs_A RAB-26, RAS-related pro 100.0 2.5E-30 8.6E-35 187.1 17.2 166 10-175 3-175 (178)
26 1u8z_A RAS-related protein RAL 100.0 6E-30 2.1E-34 183.1 18.3 163 10-173 1-167 (168)
27 1c1y_A RAS-related protein RAP 100.0 8.2E-30 2.8E-34 182.4 19.0 161 11-172 1-166 (167)
28 1mh1_A RAC1; GTP-binding, GTPa 100.0 8.3E-30 2.8E-34 185.6 19.4 165 10-175 2-182 (186)
29 2g6b_A RAS-related protein RAB 100.0 1.7E-29 5.7E-34 183.1 20.9 166 9-174 6-175 (180)
30 3cpj_B GTP-binding protein YPT 100.0 7E-30 2.4E-34 191.6 19.4 177 1-177 1-180 (223)
31 2p5s_A RAS and EF-hand domain 100.0 2.5E-30 8.4E-35 190.8 16.5 166 8-173 23-197 (199)
32 3ihw_A Centg3; RAS, centaurin, 100.0 5.9E-30 2E-34 186.6 18.3 162 6-174 13-181 (184)
33 1vg8_A RAS-related protein RAB 100.0 1.7E-29 5.8E-34 187.2 20.6 165 10-174 5-176 (207)
34 2atx_A Small GTP binding prote 100.0 1.2E-29 4.1E-34 186.2 19.6 162 10-172 15-192 (194)
35 2y8e_A RAB-protein 6, GH09086P 100.0 6.6E-30 2.3E-34 184.9 17.9 165 8-172 9-176 (179)
36 1m7b_A RND3/RHOE small GTP-bin 100.0 7.7E-30 2.6E-34 185.9 18.1 163 10-173 4-183 (184)
37 1z06_A RAS-related protein RAB 100.0 6.3E-30 2.1E-34 187.1 17.6 165 8-172 15-187 (189)
38 2oil_A CATX-8, RAS-related pro 100.0 1.5E-29 5E-34 185.6 19.7 164 10-173 22-188 (193)
39 2fu5_C RAS-related protein RAB 100.0 3.3E-30 1.1E-34 187.5 16.0 163 11-173 6-171 (183)
40 2bcg_Y Protein YP2, GTP-bindin 100.0 2.1E-29 7.2E-34 186.7 20.4 164 11-174 6-172 (206)
41 4djt_A GTP-binding nuclear pro 100.0 5.4E-30 1.8E-34 191.5 17.3 175 9-183 7-185 (218)
42 1zbd_A Rabphilin-3A; G protein 100.0 1.4E-29 4.8E-34 187.2 19.4 162 12-173 7-171 (203)
43 2j0v_A RAC-like GTP-binding pr 100.0 9.7E-30 3.3E-34 189.3 18.5 165 10-175 6-182 (212)
44 2bme_A RAB4A, RAS-related prot 100.0 1.7E-29 5.9E-34 184.1 19.2 164 11-174 8-174 (186)
45 3cbq_A GTP-binding protein REM 100.0 9.3E-30 3.2E-34 187.2 17.7 168 7-174 17-189 (195)
46 3q85_A GTP-binding protein REM 100.0 1.5E-29 5.2E-34 181.5 18.3 161 13-173 2-167 (169)
47 2o52_A RAS-related protein RAB 100.0 1.1E-29 3.7E-34 187.5 18.0 163 11-173 23-188 (200)
48 2q3h_A RAS homolog gene family 100.0 2.4E-29 8.2E-34 185.6 19.8 165 8-173 15-195 (201)
49 2ce2_X GTPase HRAS; signaling 100.0 3.3E-29 1.1E-33 178.8 19.5 162 11-173 1-165 (166)
50 2j1l_A RHO-related GTP-binding 100.0 1.6E-29 5.3E-34 188.6 18.3 165 10-175 31-211 (214)
51 2il1_A RAB12; G-protein, GDP, 100.0 9.8E-30 3.4E-34 186.6 16.6 165 9-173 22-190 (192)
52 3cph_A RAS-related protein SEC 100.0 4.1E-29 1.4E-33 185.9 20.2 164 10-173 17-182 (213)
53 3oes_A GTPase rhebl1; small GT 100.0 1E-29 3.5E-34 187.8 16.8 166 9-175 20-189 (201)
54 3clv_A RAB5 protein, putative; 100.0 4.4E-29 1.5E-33 184.3 20.3 162 11-173 5-204 (208)
55 3dz8_A RAS-related protein RAB 100.0 8.4E-31 2.9E-35 192.1 10.8 165 9-173 19-186 (191)
56 2bov_A RAla, RAS-related prote 100.0 3E-29 1E-33 185.7 19.0 167 6-173 7-177 (206)
57 3con_A GTPase NRAS; structural 100.0 6.8E-29 2.3E-33 181.6 20.6 166 7-173 15-183 (190)
58 1gwn_A RHO-related GTP-binding 100.0 1.6E-29 5.4E-34 187.4 17.3 163 10-173 25-204 (205)
59 3t1o_A Gliding protein MGLA; G 100.0 1.4E-30 4.6E-35 191.5 11.4 165 9-174 10-193 (198)
60 3bc1_A RAS-related protein RAB 100.0 4E-29 1.4E-33 183.1 19.1 164 10-173 8-185 (195)
61 3q72_A GTP-binding protein RAD 100.0 2.7E-29 9.1E-34 179.7 17.8 160 12-173 1-164 (166)
62 2nzj_A GTP-binding protein REM 100.0 2.8E-29 9.7E-34 181.0 18.0 162 11-173 2-169 (175)
63 2fn4_A P23, RAS-related protei 100.0 4.1E-29 1.4E-33 181.0 18.9 164 10-174 6-173 (181)
64 1kao_A RAP2A; GTP-binding prot 100.0 1.5E-29 5.3E-34 180.8 16.4 161 11-172 1-165 (167)
65 2a9k_A RAS-related protein RAL 100.0 3.3E-29 1.1E-33 182.5 18.2 166 7-173 12-181 (187)
66 2gco_A H9, RHO-related GTP-bin 100.0 6.2E-29 2.1E-33 183.6 19.9 160 12-172 24-199 (201)
67 1ky3_A GTP-binding protein YPT 100.0 3.4E-29 1.2E-33 181.6 18.2 164 10-173 5-178 (182)
68 2fv8_A H6, RHO-related GTP-bin 100.0 6.3E-29 2.1E-33 184.4 19.9 164 10-174 22-201 (207)
69 2iwr_A Centaurin gamma 1; ANK 100.0 4.1E-29 1.4E-33 180.8 18.5 157 10-173 4-169 (178)
70 4dsu_A GTPase KRAS, isoform 2B 100.0 6.6E-29 2.3E-33 181.2 19.6 163 11-174 2-167 (189)
71 3bwd_D RAC-like GTP-binding pr 100.0 6.2E-30 2.1E-34 185.7 13.3 162 10-172 5-180 (182)
72 2atv_A RERG, RAS-like estrogen 100.0 5.4E-29 1.9E-33 183.1 17.1 163 10-174 25-192 (196)
73 4gzl_A RAS-related C3 botulinu 100.0 6.5E-29 2.2E-33 183.9 17.0 162 9-171 26-203 (204)
74 2gf0_A GTP-binding protein DI- 100.0 9E-29 3.1E-33 182.1 17.1 163 11-174 6-172 (199)
75 4bas_A ADP-ribosylation factor 100.0 1.3E-28 4.6E-33 181.2 17.9 163 8-174 12-190 (199)
76 2yc2_C IFT27, small RAB-relate 100.0 1.6E-29 5.6E-34 187.3 12.7 163 11-173 18-192 (208)
77 2f7s_A C25KG, RAS-related prot 100.0 3.6E-29 1.2E-33 186.9 13.8 163 11-173 23-199 (217)
78 2erx_A GTP-binding protein DI- 100.0 1.9E-28 6.6E-33 176.0 17.1 160 12-172 2-166 (172)
79 1ksh_A ARF-like protein 2; sma 100.0 3.2E-28 1.1E-32 177.4 18.0 159 11-174 16-181 (186)
80 1zd9_A ADP-ribosylation factor 100.0 1.3E-28 4.5E-33 179.9 15.4 160 10-173 19-185 (188)
81 2g3y_A GTP-binding protein GEM 100.0 4E-28 1.4E-32 180.2 18.2 163 10-173 34-203 (211)
82 1zj6_A ADP-ribosylation factor 100.0 1.3E-28 4.5E-33 179.7 15.3 161 10-175 13-180 (187)
83 2h57_A ADP-ribosylation factor 100.0 2.9E-28 9.8E-33 178.4 16.4 162 7-172 15-186 (190)
84 2h17_A ADP-ribosylation factor 100.0 1.3E-28 4.4E-33 178.9 14.0 159 7-170 15-180 (181)
85 3l0i_B RAS-related protein RAB 100.0 2.9E-30 1E-34 190.4 5.2 163 11-173 31-196 (199)
86 1f6b_A SAR1; gtpases, N-termin 100.0 2.3E-28 7.7E-33 180.2 15.1 156 10-170 22-196 (198)
87 1upt_A ARL1, ADP-ribosylation 100.0 1.7E-27 5.6E-32 171.1 19.3 159 11-174 5-170 (171)
88 1m2o_B GTP-binding protein SAR 100.0 7.9E-28 2.7E-32 176.1 16.9 155 10-170 20-189 (190)
89 2cjw_A GTP-binding protein GEM 100.0 2.5E-27 8.4E-32 173.8 18.9 163 10-173 3-172 (192)
90 1fzq_A ADP-ribosylation factor 100.0 5.5E-28 1.9E-32 175.6 14.6 159 10-173 13-178 (181)
91 2b6h_A ADP-ribosylation factor 100.0 8.5E-28 2.9E-32 176.3 15.3 160 9-173 25-191 (192)
92 1r8s_A ADP-ribosylation factor 100.0 8.5E-28 2.9E-32 171.5 14.7 155 14-173 1-162 (164)
93 1moz_A ARL1, ADP-ribosylation 100.0 5E-28 1.7E-32 175.8 12.8 158 11-173 16-180 (183)
94 2zej_A Dardarin, leucine-rich 100.0 3E-28 1E-32 177.4 11.6 162 13-174 2-179 (184)
95 3llu_A RAS-related GTP-binding 100.0 8.5E-28 2.9E-32 176.8 13.7 164 6-171 13-195 (196)
96 2x77_A ADP-ribosylation factor 100.0 3.7E-27 1.3E-31 172.2 15.4 159 11-174 20-185 (189)
97 2f9l_A RAB11B, member RAS onco 99.9 3.3E-26 1.1E-30 168.7 20.0 162 12-173 4-168 (199)
98 2wkq_A NPH1-1, RAS-related C3 99.9 2.3E-26 8E-31 182.0 19.2 162 11-173 153-330 (332)
99 3th5_A RAS-related C3 botulinu 99.9 2.1E-29 7E-34 186.5 0.0 162 9-171 26-203 (204)
100 1oix_A RAS-related protein RAB 99.9 9.7E-26 3.3E-30 165.2 19.5 160 12-171 28-190 (191)
101 2wji_A Ferrous iron transport 99.9 3.5E-26 1.2E-30 163.7 14.0 154 11-171 1-163 (165)
102 3o47_A ADP-ribosylation factor 99.9 5.9E-26 2E-30 179.3 15.0 160 10-174 162-328 (329)
103 2fh5_B SR-beta, signal recogni 99.9 1.2E-25 4E-30 167.5 15.1 158 10-170 4-213 (214)
104 3c5h_A Glucocorticoid receptor 99.9 2E-26 6.8E-31 176.1 10.5 164 9-172 15-254 (255)
105 3iev_A GTP-binding protein ERA 99.9 1.4E-25 4.7E-30 175.8 15.4 170 9-181 6-190 (308)
106 2lkc_A Translation initiation 99.9 3.3E-25 1.1E-29 160.1 15.4 159 10-174 5-172 (178)
107 3lvq_E ARF-GAP with SH3 domain 99.9 5.5E-25 1.9E-29 183.2 16.8 161 10-175 319-486 (497)
108 3r7w_A Gtpase1, GTP-binding pr 99.9 2.8E-25 9.6E-30 174.0 14.1 158 12-173 2-181 (307)
109 2wjg_A FEOB, ferrous iron tran 99.9 4.3E-25 1.5E-29 161.0 13.4 160 9-175 3-171 (188)
110 2qu8_A Putative nucleolar GTP- 99.9 9.8E-25 3.3E-29 164.1 14.6 161 11-173 27-205 (228)
111 1svi_A GTP-binding protein YSX 99.9 7.9E-25 2.7E-29 160.5 13.6 157 10-172 20-194 (195)
112 3a1s_A Iron(II) transport prot 99.9 3.4E-25 1.2E-29 169.3 11.9 156 10-172 2-166 (258)
113 3r7w_B Gtpase2, GTP-binding pr 99.9 9.9E-26 3.4E-30 175.4 8.1 152 15-174 1-175 (331)
114 2gj8_A MNME, tRNA modification 99.9 2E-25 6.7E-30 160.9 9.0 152 12-172 3-165 (172)
115 1wf3_A GTP-binding protein; GT 99.9 1.2E-24 4E-29 169.7 12.2 164 11-178 5-178 (301)
116 2dyk_A GTP-binding protein; GT 99.9 1.2E-24 4.2E-29 154.5 10.9 151 14-171 2-160 (161)
117 3dpu_A RAB family protein; roc 99.9 9.3E-25 3.2E-29 183.1 11.9 165 9-176 37-211 (535)
118 3i8s_A Ferrous iron transport 99.9 3E-25 1E-29 171.2 7.9 157 11-174 1-170 (274)
119 3k53_A Ferrous iron transport 99.9 2.9E-24 9.9E-29 165.6 13.1 159 11-175 1-168 (271)
120 3b1v_A Ferrous iron uptake tra 99.9 7.4E-25 2.5E-29 168.4 9.6 152 13-172 3-163 (272)
121 3pqc_A Probable GTP-binding pr 99.9 8.4E-24 2.9E-28 154.8 14.3 157 7-172 17-193 (195)
122 3gee_A MNME, tRNA modification 99.9 2.6E-23 9E-28 170.9 17.2 158 12-172 232-397 (476)
123 2cxx_A Probable GTP-binding pr 99.9 1.2E-24 4.3E-29 158.7 8.3 155 14-175 2-186 (190)
124 3iby_A Ferrous iron transport 99.9 3.6E-24 1.2E-28 163.4 10.5 150 14-170 2-164 (256)
125 4dhe_A Probable GTP-binding pr 99.9 7.6E-24 2.6E-28 158.5 11.2 162 9-173 25-211 (223)
126 1ega_A Protein (GTP-binding pr 99.9 2.3E-22 8E-27 156.9 16.1 164 10-178 5-180 (301)
127 3qq5_A Small GTP-binding prote 99.9 2E-23 6.9E-28 169.0 9.1 160 9-174 30-197 (423)
128 2e87_A Hypothetical protein PH 99.9 4.7E-22 1.6E-26 158.8 14.7 160 11-172 165-335 (357)
129 1nrj_B SR-beta, signal recogni 99.9 5.3E-23 1.8E-27 153.5 6.8 147 7-159 6-170 (218)
130 1xzp_A Probable tRNA modificat 99.9 1.6E-22 5.5E-27 166.4 8.1 153 13-172 243-404 (482)
131 2hjg_A GTP-binding protein ENG 99.9 1.3E-22 4.4E-27 166.1 7.0 155 12-173 2-165 (436)
132 1mky_A Probable GTP-binding pr 99.9 6.5E-22 2.2E-26 162.1 11.0 154 14-173 2-166 (439)
133 3geh_A MNME, tRNA modification 99.9 5.2E-22 1.8E-26 162.7 10.4 153 12-174 223-385 (462)
134 1lnz_A SPO0B-associated GTP-bi 99.9 3.8E-22 1.3E-26 157.7 8.3 159 14-176 159-333 (342)
135 3sjy_A Translation initiation 99.9 1.9E-20 6.3E-25 151.9 17.2 163 8-172 3-191 (403)
136 2xtp_A GTPase IMAP family memb 99.9 1.9E-21 6.5E-26 148.9 10.7 163 9-175 18-210 (260)
137 2hjg_A GTP-binding protein ENG 99.9 5.1E-22 1.7E-26 162.6 7.8 158 12-173 174-349 (436)
138 3lxx_A GTPase IMAP family memb 99.9 6.2E-21 2.1E-25 144.3 11.9 166 7-174 23-215 (239)
139 3cb4_D GTP-binding protein LEP 99.8 4.3E-21 1.5E-25 161.4 11.8 158 12-172 3-181 (599)
140 3lxw_A GTPase IMAP family memb 99.8 6.7E-21 2.3E-25 144.7 11.6 164 8-174 16-209 (247)
141 1cip_A Protein (guanine nucleo 99.8 3.5E-21 1.2E-25 152.7 10.1 114 60-173 191-344 (353)
142 4dcu_A GTP-binding protein ENG 99.8 3.6E-21 1.2E-25 158.4 9.5 160 10-173 192-369 (456)
143 3tr5_A RF-3, peptide chain rel 99.8 7.8E-21 2.7E-25 158.1 10.6 117 12-131 12-148 (528)
144 2ywe_A GTP-binding protein LEP 99.8 1.3E-20 4.6E-25 158.2 12.0 158 12-172 5-183 (600)
145 3izy_P Translation initiation 99.8 8.5E-22 2.9E-26 163.4 4.7 157 12-172 3-167 (537)
146 3p26_A Elongation factor 1 alp 99.8 1E-20 3.6E-25 156.6 11.0 153 10-162 30-227 (483)
147 3ohm_A Guanine nucleotide-bind 99.8 3E-20 1E-24 145.3 12.6 117 58-174 163-319 (327)
148 1wb1_A Translation elongation 99.8 3.1E-20 1.1E-24 153.4 12.4 162 5-172 11-188 (482)
149 1mky_A Probable GTP-binding pr 99.8 3.5E-20 1.2E-24 151.8 12.0 158 12-173 179-355 (439)
150 4dcu_A GTP-binding protein ENG 99.8 5.9E-21 2E-25 157.1 7.1 158 9-173 19-185 (456)
151 3j2k_7 ERF3, eukaryotic polype 99.8 1.6E-19 5.6E-24 147.6 15.4 158 8-165 12-217 (439)
152 2ged_A SR-beta, signal recogni 99.8 1.2E-20 4E-25 138.0 7.7 118 10-133 45-172 (193)
153 1s0u_A EIF-2-gamma, translatio 99.8 3.1E-19 1.1E-23 144.9 16.8 162 10-172 5-197 (408)
154 2xtz_A Guanine nucleotide-bind 99.8 3.9E-20 1.3E-24 146.7 11.1 114 60-173 181-345 (354)
155 1jny_A EF-1-alpha, elongation 99.8 3.1E-21 1.1E-25 157.8 4.1 154 10-164 3-204 (435)
156 3izq_1 HBS1P, elongation facto 99.8 4.4E-20 1.5E-24 156.2 11.2 154 10-163 164-362 (611)
157 2qtf_A Protein HFLX, GTP-bindi 99.8 1.3E-19 4.5E-24 144.5 12.4 158 13-175 178-356 (364)
158 1zcb_A G alpha I/13; GTP-bindi 99.8 8.8E-20 3E-24 145.1 11.3 114 60-173 199-353 (362)
159 1d2e_A Elongation factor TU (E 99.8 7.7E-20 2.6E-24 147.9 9.8 158 12-172 2-194 (397)
160 1kk1_A EIF2gamma; initiation o 99.8 1.1E-18 3.7E-23 141.9 16.4 162 10-172 7-199 (410)
161 1g7s_A Translation initiation 99.8 3.9E-19 1.3E-23 149.6 14.0 156 11-172 3-217 (594)
162 3t5d_A Septin-7; GTP-binding p 99.8 7.3E-20 2.5E-24 141.1 8.8 158 11-171 6-202 (274)
163 2elf_A Protein translation elo 99.8 1.8E-19 6.1E-24 144.1 10.8 143 15-172 23-179 (370)
164 4fid_A G protein alpha subunit 99.8 5.6E-20 1.9E-24 144.3 7.7 118 56-173 155-328 (340)
165 2c78_A Elongation factor TU-A; 99.8 9.2E-20 3.1E-24 147.9 8.6 160 9-171 7-210 (405)
166 1zo1_I IF2, translation initia 99.8 2.3E-20 7.8E-25 153.7 4.9 153 12-169 3-163 (501)
167 2qag_A Septin-2, protein NEDD5 99.8 7.1E-20 2.4E-24 146.2 7.3 162 11-176 35-236 (361)
168 1pui_A ENGB, probable GTP-bind 99.8 5.4E-19 1.8E-23 130.9 11.1 161 8-174 21-200 (210)
169 1r5b_A Eukaryotic peptide chai 99.8 8.3E-20 2.9E-24 150.4 7.3 155 10-164 40-243 (467)
170 1azs_C GS-alpha; complex (lyas 99.8 8.6E-19 2.9E-23 140.5 12.9 113 61-173 216-385 (402)
171 1zun_B Sulfate adenylate trans 99.8 4.3E-19 1.5E-23 145.1 11.0 151 11-163 22-214 (434)
172 1dar_A EF-G, elongation factor 99.8 1.3E-18 4.6E-23 149.2 12.5 127 1-131 1-143 (691)
173 2aka_B Dynamin-1; fusion prote 99.8 5.5E-19 1.9E-23 137.8 8.4 159 10-170 23-250 (299)
174 2h5e_A Peptide chain release f 99.8 1.7E-18 5.7E-23 144.3 11.3 119 10-131 10-148 (529)
175 1f60_A Elongation factor EEF1A 99.8 3.9E-19 1.3E-23 146.1 7.3 152 10-163 4-202 (458)
176 3mca_A HBS1, elongation factor 99.8 1.9E-19 6.4E-24 151.9 5.5 151 10-161 174-371 (592)
177 3avx_A Elongation factor TS, e 99.8 1.5E-18 5.1E-23 152.9 10.9 160 9-171 292-484 (1289)
178 2dy1_A Elongation factor G; tr 99.8 4.3E-18 1.5E-22 145.6 12.8 117 11-130 7-139 (665)
179 3def_A T7I23.11 protein; chlor 99.8 4.7E-18 1.6E-22 130.2 10.1 119 10-130 33-164 (262)
180 1udx_A The GTP-binding protein 99.7 1.4E-17 4.8E-22 134.5 13.1 160 14-176 158-328 (416)
181 1wxq_A GTP-binding protein; st 99.7 1.3E-18 4.3E-23 140.3 4.6 83 14-98 1-114 (397)
182 1h65_A Chloroplast outer envel 99.7 1.5E-17 5.2E-22 127.9 10.1 120 10-131 36-168 (270)
183 2qnr_A Septin-2, protein NEDD5 99.7 6.5E-18 2.2E-22 131.7 7.8 162 12-177 17-218 (301)
184 2xex_A Elongation factor G; GT 99.7 5E-17 1.7E-21 139.6 13.3 119 10-131 7-141 (693)
185 2rdo_7 EF-G, elongation factor 99.7 1.5E-16 5E-21 136.8 14.7 119 10-131 7-148 (704)
186 2j69_A Bacterial dynamin-like 99.7 2.2E-16 7.5E-21 135.6 13.5 109 63-173 175-325 (695)
187 3vqt_A RF-3, peptide chain rel 99.7 2.1E-16 7.1E-21 132.2 12.4 116 13-131 31-166 (548)
188 1jwy_B Dynamin A GTPase domain 99.7 3.8E-16 1.3E-20 122.6 13.0 113 62-176 131-265 (315)
189 2qag_C Septin-7; cell cycle, c 99.7 2.1E-16 7.2E-21 127.8 10.6 157 12-171 30-225 (418)
190 3t34_A Dynamin-related protein 99.6 1.2E-16 4E-21 127.8 5.3 153 12-166 33-254 (360)
191 2x2e_A Dynamin-1; nitration, h 99.6 1.5E-16 5E-21 126.9 5.4 157 11-169 29-254 (353)
192 1u0l_A Probable GTPase ENGC; p 99.6 2.1E-16 7.3E-21 123.2 5.5 133 28-168 32-168 (301)
193 3p32_A Probable GTPase RV1496/ 99.6 4E-16 1.4E-20 124.4 6.8 103 61-173 171-284 (355)
194 1n0u_A EF-2, elongation factor 99.6 1E-15 3.5E-20 133.9 6.9 117 11-130 17-163 (842)
195 2wsm_A Hydrogenase expression/ 99.6 4.3E-15 1.5E-19 110.7 8.2 152 12-173 29-214 (221)
196 1jal_A YCHF protein; nucleotid 99.6 3E-14 1E-18 112.9 12.9 82 14-97 3-108 (363)
197 2www_A Methylmalonic aciduria 99.6 1.8E-15 6.1E-20 120.2 5.4 102 61-172 166-278 (349)
198 2qpt_A EH domain-containing pr 99.5 6.4E-15 2.2E-19 123.4 7.3 119 11-132 63-233 (550)
199 3j25_A Tetracycline resistance 99.5 1.1E-15 3.9E-20 130.1 2.7 115 14-131 3-133 (638)
200 2hf9_A Probable hydrogenase ni 99.5 4.1E-14 1.4E-18 105.7 10.6 152 11-172 36-223 (226)
201 2p67_A LAO/AO transport system 99.5 6.1E-15 2.1E-19 116.9 5.8 102 61-172 148-260 (341)
202 4fn5_A EF-G 1, elongation fact 99.5 1.5E-13 5.1E-18 118.5 13.0 116 13-131 13-151 (709)
203 2dby_A GTP-binding protein; GD 99.5 3.9E-13 1.3E-17 107.0 11.8 82 14-97 2-111 (368)
204 1yrb_A ATP(GTP)binding protein 99.5 2E-13 6.7E-18 104.3 8.7 113 62-175 109-259 (262)
205 3zvr_A Dynamin-1; hydrolase, D 99.4 1.8E-13 6.3E-18 117.3 8.8 165 11-177 49-285 (772)
206 4a9a_A Ribosome-interacting GT 99.4 1.3E-13 4.6E-18 109.7 7.5 116 13-130 72-195 (376)
207 2qm8_A GTPase/ATPase; G protei 99.3 1.5E-12 5.2E-17 102.8 5.0 102 61-172 147-260 (337)
208 2ohf_A Protein OLA1, GTP-bindi 99.3 4.8E-12 1.6E-16 101.2 5.3 88 12-101 21-132 (396)
209 2yv5_A YJEQ protein; hydrolase 99.2 5.7E-11 2E-15 92.5 9.7 94 72-167 66-163 (302)
210 3l82_B F-box only protein 4; T 99.0 4E-10 1.4E-14 81.7 6.0 104 69-173 109-223 (227)
211 3h2y_A GTPase family protein; 99.0 3E-11 1E-15 96.5 0.1 135 13-153 160-310 (368)
212 3ec1_A YQEH GTPase; atnos1, at 99.0 7.6E-11 2.6E-15 94.2 2.2 139 13-157 162-315 (369)
213 3gfo_A Cobalt import ATP-bindi 99.0 1.6E-10 5.5E-15 88.5 3.3 45 159-208 146-190 (275)
214 3tif_A Uncharacterized ABC tra 99.0 1.1E-09 3.6E-14 82.2 7.6 51 152-209 143-193 (235)
215 3rlf_A Maltose/maltodextrin im 99.0 2E-09 6.8E-14 85.8 9.4 46 159-209 136-181 (381)
216 3tui_C Methionine import ATP-b 99.0 5.2E-10 1.8E-14 88.6 5.6 46 159-209 166-211 (366)
217 1z47_A CYSA, putative ABC-tran 99.0 3.6E-09 1.2E-13 83.7 10.0 46 159-209 148-193 (355)
218 1vpl_A ABC transporter, ATP-bi 99.0 1.4E-09 4.7E-14 82.6 7.2 47 159-210 149-195 (256)
219 1sgw_A Putative ABC transporte 99.0 5.3E-09 1.8E-13 77.2 10.0 45 159-208 136-180 (214)
220 2qag_B Septin-6, protein NEDD5 98.9 4.9E-09 1.7E-13 84.6 10.3 60 14-73 43-106 (427)
221 4g1u_C Hemin import ATP-bindin 98.9 7.7E-10 2.6E-14 84.4 5.1 46 159-209 144-195 (266)
222 2olj_A Amino acid ABC transpor 98.9 9.6E-10 3.3E-14 83.7 5.5 47 159-210 162-208 (263)
223 2pcj_A ABC transporter, lipopr 98.9 2.4E-09 8.1E-14 79.7 7.3 47 159-210 143-189 (224)
224 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 9.6E-10 3.3E-14 88.1 5.4 85 12-97 19-127 (392)
225 3fvq_A Fe(3+) IONS import ATP- 98.9 6.8E-09 2.3E-13 82.1 10.0 44 159-207 141-184 (359)
226 2it1_A 362AA long hypothetical 98.9 5.9E-09 2E-13 82.8 9.6 51 152-209 131-181 (362)
227 1b0u_A Histidine permease; ABC 98.9 1.3E-08 4.6E-13 77.4 11.2 48 159-211 156-203 (262)
228 1g6h_A High-affinity branched- 98.9 4.5E-09 1.5E-13 79.9 8.3 47 159-210 156-202 (257)
229 2ihy_A ABC transporter, ATP-bi 98.9 2.8E-09 9.7E-14 81.9 7.0 46 159-209 164-209 (279)
230 2onk_A Molybdate/tungstate ABC 98.9 9.4E-10 3.2E-14 82.7 4.2 46 159-209 129-174 (240)
231 1ji0_A ABC transporter; ATP bi 98.9 6.9E-09 2.4E-13 78.0 8.7 47 159-210 142-188 (240)
232 1g29_1 MALK, maltose transport 98.9 2E-08 7E-13 80.0 11.7 51 152-209 137-187 (372)
233 3sop_A Neuronal-specific septi 98.9 8E-09 2.7E-13 79.0 8.8 23 13-35 2-24 (270)
234 3d31_A Sulfate/molybdate ABC t 98.9 2.1E-09 7.2E-14 84.9 5.6 46 159-209 130-175 (348)
235 2yyz_A Sugar ABC transporter, 98.9 1.1E-08 3.7E-13 81.1 9.3 46 159-209 136-181 (359)
236 1v43_A Sugar-binding transport 98.9 1.9E-08 6.5E-13 80.1 10.6 51 152-209 139-189 (372)
237 1oxx_K GLCV, glucose, ABC tran 98.8 1.1E-08 3.7E-13 81.1 8.9 46 159-209 143-188 (353)
238 2nq2_C Hypothetical ABC transp 98.8 2.1E-08 7.3E-13 75.9 9.7 47 159-210 131-177 (253)
239 3l2o_B F-box only protein 4; s 98.8 6.1E-09 2.1E-13 79.2 6.5 104 69-173 194-308 (312)
240 2d2e_A SUFC protein; ABC-ATPas 98.8 1.9E-09 6.5E-14 81.6 3.6 47 159-210 146-192 (250)
241 2pjz_A Hypothetical protein ST 98.8 1.2E-08 4E-13 77.7 7.8 45 159-208 131-175 (263)
242 1tq4_A IIGP1, interferon-induc 98.8 2.5E-08 8.5E-13 80.5 10.0 158 13-178 69-258 (413)
243 3nh6_A ATP-binding cassette SU 98.8 1.9E-09 6.3E-14 83.8 3.3 46 159-209 193-238 (306)
244 2yz2_A Putative ABC transporte 98.8 2.1E-08 7.3E-13 76.5 8.8 47 159-210 141-187 (266)
245 2j37_W Signal recognition part 98.8 4E-09 1.4E-13 87.1 4.1 152 11-170 99-310 (504)
246 2qi9_C Vitamin B12 import ATP- 98.8 5.7E-09 2E-13 78.8 4.5 47 159-210 129-182 (249)
247 1puj_A YLQF, conserved hypothe 98.7 8.6E-09 2.9E-13 79.3 5.2 59 11-73 118-176 (282)
248 3cnl_A YLQF, putative uncharac 98.7 5.8E-09 2E-13 79.4 3.3 57 14-74 100-156 (262)
249 2ixe_A Antigen peptide transpo 98.7 4.9E-09 1.7E-13 80.2 2.4 46 159-209 159-204 (271)
250 2zu0_C Probable ATP-dependent 98.7 6.6E-08 2.3E-12 73.8 8.3 47 159-210 167-213 (267)
251 2cbz_A Multidrug resistance-as 98.7 6.9E-08 2.3E-12 72.4 7.8 42 159-205 130-171 (237)
252 2ff7_A Alpha-hemolysin translo 98.6 9.6E-09 3.3E-13 77.6 2.8 45 159-208 148-192 (247)
253 1mv5_A LMRA, multidrug resista 98.6 1.5E-08 5E-13 76.4 3.2 45 159-208 142-186 (243)
254 3h2y_A GTPase family protein; 98.6 6.2E-08 2.1E-12 77.4 6.6 109 72-186 56-172 (368)
255 2pze_A Cystic fibrosis transme 98.6 3.2E-07 1.1E-11 68.4 10.0 41 159-204 133-173 (229)
256 3ozx_A RNAse L inhibitor; ATP 98.6 5.6E-08 1.9E-12 81.2 6.3 46 159-209 141-186 (538)
257 2ghi_A Transport protein; mult 98.6 8.4E-08 2.9E-12 72.9 6.2 46 159-209 158-203 (260)
258 3b5x_A Lipid A export ATP-bind 98.6 2.1E-07 7.2E-12 78.7 9.2 46 159-209 483-528 (582)
259 3ozx_A RNAse L inhibitor; ATP 98.6 1.1E-07 3.8E-12 79.5 7.3 51 152-209 383-433 (538)
260 1puj_A YLQF, conserved hypothe 98.5 2.2E-07 7.5E-12 71.5 7.8 101 67-172 4-105 (282)
261 3j16_B RLI1P; ribosome recycli 98.5 1.7E-07 5.7E-12 79.4 6.8 50 152-208 465-514 (608)
262 3bk7_A ABC transporter ATP-bin 98.5 1.9E-07 6.6E-12 79.1 6.8 50 152-208 469-518 (607)
263 3j16_B RLI1P; ribosome recycli 98.5 1.7E-07 5.9E-12 79.3 6.3 48 159-211 224-271 (608)
264 3ec1_A YQEH GTPase; atnos1, at 98.5 1.8E-07 6.1E-12 74.7 5.7 110 71-186 57-174 (369)
265 3dm5_A SRP54, signal recogniti 98.5 3.9E-07 1.3E-11 73.9 7.5 90 62-160 183-278 (443)
266 3qf4_A ABC transporter, ATP-bi 98.4 8.1E-08 2.8E-12 81.3 3.5 46 159-209 482-527 (587)
267 2yl4_A ATP-binding cassette SU 98.4 8.4E-08 2.9E-12 81.4 3.3 46 159-209 486-531 (595)
268 2bbs_A Cystic fibrosis transme 98.4 1.4E-06 4.9E-11 67.1 9.7 41 159-204 162-202 (290)
269 1yqt_A RNAse L inhibitor; ATP- 98.4 3.5E-07 1.2E-11 76.6 6.6 50 152-208 399-448 (538)
270 1yqt_A RNAse L inhibitor; ATP- 98.4 2E-07 6.7E-12 78.0 5.1 47 159-210 161-207 (538)
271 3bk7_A ABC transporter ATP-bin 98.4 3.5E-07 1.2E-11 77.5 6.5 52 152-210 226-277 (607)
272 3b60_A Lipid A export ATP-bind 98.4 1.9E-07 6.6E-12 79.0 4.7 46 159-209 483-528 (582)
273 3gd7_A Fusion complex of cysti 98.4 7.5E-08 2.6E-12 77.2 2.0 45 159-208 158-202 (390)
274 4a82_A Cystic fibrosis transme 98.4 3.5E-08 1.2E-12 83.4 0.1 46 159-209 480-525 (578)
275 3qf4_B Uncharacterized ABC tra 98.4 6E-08 2E-12 82.3 1.3 46 159-209 494-539 (598)
276 1f5n_A Interferon-induced guan 98.4 5.1E-07 1.7E-11 75.9 6.3 65 10-74 35-103 (592)
277 4gp7_A Metallophosphoesterase; 98.4 5.2E-07 1.8E-11 64.2 5.4 33 158-195 85-117 (171)
278 4f4c_A Multidrug resistance pr 98.3 3.3E-07 1.1E-11 84.2 4.5 46 159-209 1220-1265(1321)
279 3ux8_A Excinuclease ABC, A sub 98.3 9.8E-07 3.4E-11 75.9 7.0 53 152-211 200-254 (670)
280 4f4c_A Multidrug resistance pr 98.3 4.2E-07 1.4E-11 83.5 4.1 46 159-209 557-602 (1321)
281 3kl4_A SRP54, signal recogniti 98.2 2.2E-06 7.5E-11 69.5 7.1 91 61-160 179-277 (433)
282 2v3c_C SRP54, signal recogniti 98.2 1E-06 3.5E-11 71.6 5.2 86 60-153 179-272 (432)
283 3g5u_A MCG1178, multidrug resi 98.2 1.3E-06 4.4E-11 80.2 4.8 46 159-209 1174-1219(1284)
284 1j8m_F SRP54, signal recogniti 98.1 2.6E-06 8.9E-11 65.9 5.5 91 61-161 180-279 (297)
285 3e70_C DPA, signal recognition 98.1 5.2E-06 1.8E-10 65.1 7.2 90 62-160 212-307 (328)
286 3g5u_A MCG1178, multidrug resi 98.1 3.9E-07 1.3E-11 83.5 0.4 46 159-209 529-574 (1284)
287 3szr_A Interferon-induced GTP- 98.1 4.8E-06 1.6E-10 70.7 6.9 23 15-38 47-69 (608)
288 2iw3_A Elongation factor 3A; a 98.1 1.2E-05 4.1E-10 71.2 8.5 43 159-206 551-593 (986)
289 3cnl_A YLQF, putative uncharac 97.9 5.7E-06 2E-10 62.9 3.6 93 69-169 4-97 (262)
290 1bif_A 6-phosphofructo-2-kinas 97.9 3.3E-07 1.1E-11 75.5 -3.7 101 11-113 37-147 (469)
291 3qf7_A RAD50; ABC-ATPase, ATPa 97.9 0.00027 9.4E-09 56.2 13.0 47 159-210 282-334 (365)
292 1ye8_A Protein THEP1, hypothet 97.9 7E-06 2.4E-10 58.7 3.2 43 159-206 79-128 (178)
293 1lvg_A Guanylate kinase, GMP k 97.7 1.4E-05 4.7E-10 58.1 2.8 21 14-34 5-25 (198)
294 1t9h_A YLOQ, probable GTPase E 97.7 1.4E-05 4.8E-10 61.9 2.8 22 13-34 173-194 (307)
295 1znw_A Guanylate kinase, GMP k 97.7 1.8E-05 6.3E-10 57.8 2.9 21 14-34 21-41 (207)
296 1t9h_A YLOQ, probable GTPase E 97.7 4.2E-05 1.4E-09 59.3 5.0 82 77-160 78-164 (307)
297 2rcn_A Probable GTPase ENGC; Y 97.7 3.9E-05 1.3E-09 60.7 4.7 22 14-35 216-237 (358)
298 3a00_A Guanylate kinase, GMP k 97.7 2E-05 7E-10 56.5 2.9 19 16-34 4-22 (186)
299 1kgd_A CASK, peripheral plasma 97.7 3.1E-05 1E-09 55.3 3.6 23 13-35 5-27 (180)
300 3tr0_A Guanylate kinase, GMP k 97.7 2.3E-05 7.8E-10 57.0 3.0 21 14-34 8-28 (205)
301 1htw_A HI0065; nucleotide-bind 97.6 2.6E-05 8.8E-10 54.5 2.9 22 14-35 34-55 (158)
302 1ex7_A Guanylate kinase; subst 97.6 9.2E-06 3.2E-10 58.4 0.5 20 16-35 4-23 (186)
303 1s96_A Guanylate kinase, GMP k 97.6 2.6E-05 9E-10 57.5 3.0 23 13-35 16-38 (219)
304 3ney_A 55 kDa erythrocyte memb 97.6 1.5E-05 5.1E-10 57.7 1.5 26 10-35 16-41 (197)
305 3q5d_A Atlastin-1; G protein, 97.6 5.6E-05 1.9E-09 61.5 5.0 26 10-35 64-89 (447)
306 1z6g_A Guanylate kinase; struc 97.6 2.9E-05 9.8E-10 57.3 2.9 21 14-34 24-44 (218)
307 2xxa_A Signal recognition part 97.6 0.00024 8.2E-09 57.8 8.5 84 61-152 183-273 (433)
308 3c8u_A Fructokinase; YP_612366 97.6 3.9E-05 1.3E-09 56.1 3.5 24 11-34 20-43 (208)
309 1zp6_A Hypothetical protein AT 97.6 4.5E-05 1.5E-09 54.7 3.7 22 13-34 9-30 (191)
310 2yv5_A YJEQ protein; hydrolase 97.6 0.00014 5E-09 56.3 6.7 22 13-34 165-186 (302)
311 2rcn_A Probable GTPase ENGC; Y 97.6 0.00037 1.3E-08 55.1 8.7 81 82-165 127-211 (358)
312 3b85_A Phosphate starvation-in 97.5 3.5E-05 1.2E-09 56.4 2.4 35 164-207 112-146 (208)
313 2i3b_A HCR-ntpase, human cance 97.5 5.1E-05 1.7E-09 54.7 2.8 20 15-34 3-22 (189)
314 3asz_A Uridine kinase; cytidin 97.5 6.2E-05 2.1E-09 55.0 3.3 23 12-34 5-27 (211)
315 3tau_A Guanylate kinase, GMP k 97.5 6E-05 2.1E-09 55.1 3.1 23 13-35 8-30 (208)
316 2bdt_A BH3686; alpha-beta prot 97.4 7.3E-05 2.5E-09 53.6 3.1 20 15-34 4-23 (189)
317 2bbw_A Adenylate kinase 4, AK4 97.4 8.2E-05 2.8E-09 55.8 3.3 21 14-34 28-48 (246)
318 2ehv_A Hypothetical protein PH 97.4 7.5E-05 2.6E-09 55.9 3.1 21 14-34 31-51 (251)
319 3aez_A Pantothenate kinase; tr 97.4 0.00012 4E-09 57.0 4.2 25 10-34 87-111 (312)
320 1kag_A SKI, shikimate kinase I 97.4 8.2E-05 2.8E-09 52.5 3.0 20 14-33 5-24 (173)
321 2eyu_A Twitching motility prot 97.4 8.3E-05 2.8E-09 56.4 3.1 22 13-34 25-46 (261)
322 2v9p_A Replication protein E1; 97.4 8.2E-05 2.8E-09 57.6 3.1 21 14-34 127-147 (305)
323 2j41_A Guanylate kinase; GMP, 97.4 0.00011 3.6E-09 53.4 3.6 21 14-34 7-27 (207)
324 4eun_A Thermoresistant glucoki 97.4 9.5E-05 3.3E-09 53.6 3.0 22 13-34 29-50 (200)
325 1knq_A Gluconate kinase; ALFA/ 97.4 0.00014 4.8E-09 51.4 3.8 23 12-34 7-29 (175)
326 3lnc_A Guanylate kinase, GMP k 97.3 6.4E-05 2.2E-09 55.8 1.8 21 14-34 28-48 (231)
327 4a74_A DNA repair and recombin 97.3 0.0001 3.5E-09 54.4 2.8 22 14-35 26-47 (231)
328 2jeo_A Uridine-cytidine kinase 97.3 0.00014 4.9E-09 54.4 3.6 24 11-34 23-46 (245)
329 2qor_A Guanylate kinase; phosp 97.3 0.00013 4.4E-09 53.1 3.1 22 13-34 12-33 (204)
330 1kht_A Adenylate kinase; phosp 97.3 0.00015 5E-09 51.9 3.3 22 13-34 3-24 (192)
331 3lw7_A Adenylate kinase relate 97.3 0.00016 5.3E-09 50.9 3.2 20 14-33 2-21 (179)
332 2if2_A Dephospho-COA kinase; a 97.3 0.00014 4.8E-09 52.7 3.1 21 14-34 2-22 (204)
333 1cke_A CK, MSSA, protein (cyti 97.3 0.00015 5.3E-09 53.4 3.3 21 14-34 6-26 (227)
334 3ec2_A DNA replication protein 97.3 0.00013 4.3E-09 52.0 2.7 22 13-34 38-59 (180)
335 1jjv_A Dephospho-COA kinase; P 97.3 0.00017 5.7E-09 52.5 3.3 21 14-34 3-23 (206)
336 1vma_A Cell division protein F 97.3 0.0024 8.3E-08 49.4 10.0 22 13-34 104-125 (306)
337 1tev_A UMP-CMP kinase; ploop, 97.3 0.00018 6.1E-09 51.6 3.4 23 12-34 2-24 (196)
338 1lw7_A Transcriptional regulat 97.3 0.00013 4.6E-09 58.0 3.0 25 13-38 170-194 (365)
339 3kb2_A SPBC2 prophage-derived 97.3 0.00017 5.7E-09 50.7 3.1 20 15-34 3-22 (173)
340 1u0l_A Probable GTPase ENGC; p 97.2 0.00022 7.6E-09 55.2 3.8 24 14-38 170-193 (301)
341 2f1r_A Molybdopterin-guanine d 97.2 9.7E-05 3.3E-09 52.3 1.6 20 15-34 4-23 (171)
342 3tqc_A Pantothenate kinase; bi 97.2 0.00025 8.4E-09 55.3 4.0 24 10-33 89-112 (321)
343 3cm0_A Adenylate kinase; ATP-b 97.2 0.00023 7.8E-09 50.8 3.5 22 13-34 4-25 (186)
344 2cdn_A Adenylate kinase; phosp 97.2 0.00025 8.4E-09 51.4 3.7 26 9-34 16-41 (201)
345 3vaa_A Shikimate kinase, SK; s 97.2 0.00021 7.3E-09 51.7 3.4 21 14-34 26-46 (199)
346 3uie_A Adenylyl-sulfate kinase 97.2 0.00025 8.6E-09 51.4 3.7 24 11-34 23-46 (200)
347 2plr_A DTMP kinase, probable t 97.2 0.00025 8.4E-09 51.6 3.7 23 12-34 3-25 (213)
348 1ly1_A Polynucleotide kinase; 97.2 0.00019 6.7E-09 50.7 3.0 21 14-34 3-23 (181)
349 3t61_A Gluconokinase; PSI-biol 97.2 0.00019 6.6E-09 52.0 2.9 21 14-34 19-39 (202)
350 1qhx_A CPT, protein (chloramph 97.2 0.00026 9E-09 50.0 3.5 21 14-34 4-24 (178)
351 3jvv_A Twitching mobility prot 97.2 0.00019 6.3E-09 56.9 2.9 20 15-34 125-144 (356)
352 3b9q_A Chloroplast SRP recepto 97.2 0.0002 6.7E-09 55.5 3.0 23 12-34 99-121 (302)
353 1np6_A Molybdopterin-guanine d 97.2 0.00023 7.9E-09 50.5 3.1 22 14-35 7-28 (174)
354 1rz3_A Hypothetical protein rb 97.2 0.00035 1.2E-08 50.7 4.1 24 11-34 20-43 (201)
355 1y63_A LMAJ004144AAA protein; 97.2 0.0003 1E-08 50.2 3.7 23 12-34 9-31 (184)
356 1sq5_A Pantothenate kinase; P- 97.2 0.00026 9E-09 55.0 3.6 24 11-34 78-101 (308)
357 1rj9_A FTSY, signal recognitio 97.2 0.00021 7E-09 55.4 2.9 22 13-34 102-123 (304)
358 3fb4_A Adenylate kinase; psych 97.2 0.00024 8.2E-09 52.0 3.2 20 15-34 2-21 (216)
359 4e22_A Cytidylate kinase; P-lo 97.2 0.00027 9.2E-09 53.2 3.5 23 12-34 26-48 (252)
360 3dl0_A Adenylate kinase; phosp 97.1 0.00026 8.9E-09 51.8 3.2 20 15-34 2-21 (216)
361 1aky_A Adenylate kinase; ATP:A 97.1 0.00029 1E-08 51.8 3.4 23 12-34 3-25 (220)
362 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00023 7.7E-09 55.9 2.8 23 15-38 173-195 (330)
363 2yvu_A Probable adenylyl-sulfa 97.1 0.00042 1.4E-08 49.5 4.0 27 8-34 8-34 (186)
364 3kta_A Chromosome segregation 97.1 0.00025 8.6E-09 50.4 2.8 21 15-35 28-48 (182)
365 2qt1_A Nicotinamide riboside k 97.1 0.00035 1.2E-08 50.8 3.6 22 13-34 21-42 (207)
366 2vp4_A Deoxynucleoside kinase; 97.1 0.00035 1.2E-08 51.8 3.5 24 10-33 17-40 (230)
367 2gza_A Type IV secretion syste 97.1 0.00025 8.7E-09 56.3 2.8 21 14-34 176-196 (361)
368 2jaq_A Deoxyguanosine kinase; 97.1 0.00034 1.2E-08 50.5 3.2 20 15-34 2-21 (205)
369 1uj2_A Uridine-cytidine kinase 97.1 0.00037 1.3E-08 52.4 3.5 27 8-34 17-43 (252)
370 1odf_A YGR205W, hypothetical 3 97.1 0.00046 1.6E-08 53.1 4.1 25 10-34 28-52 (290)
371 2rhm_A Putative kinase; P-loop 97.1 0.00039 1.3E-08 49.8 3.5 22 13-34 5-26 (193)
372 2x8a_A Nuclear valosin-contain 97.1 0.0003 1E-08 53.7 2.9 19 16-34 47-65 (274)
373 2ewv_A Twitching motility prot 97.1 0.00031 1E-08 56.1 3.1 22 13-34 136-157 (372)
374 1nks_A Adenylate kinase; therm 97.1 0.00033 1.1E-08 50.1 3.1 20 15-34 3-22 (194)
375 2kjq_A DNAA-related protein; s 97.0 0.00023 7.7E-09 49.2 2.0 22 13-34 36-57 (149)
376 1p9r_A General secretion pathw 97.0 0.00029 1E-08 57.0 2.9 21 15-35 169-189 (418)
377 4dzz_A Plasmid partitioning pr 97.0 0.00019 6.5E-09 52.0 1.7 85 61-150 75-162 (206)
378 3tlx_A Adenylate kinase 2; str 97.0 0.00047 1.6E-08 51.6 3.8 23 12-34 28-50 (243)
379 1ukz_A Uridylate kinase; trans 97.0 0.00059 2E-08 49.4 4.2 23 12-34 14-36 (203)
380 2og2_A Putative signal recogni 97.0 0.00033 1.1E-08 55.5 3.0 23 12-34 156-178 (359)
381 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.00028 9.5E-09 57.9 2.6 24 14-38 139-162 (460)
382 1uf9_A TT1252 protein; P-loop, 97.0 0.00046 1.6E-08 49.8 3.5 24 11-34 6-29 (203)
383 2obl_A ESCN; ATPase, hydrolase 97.0 0.00036 1.2E-08 55.1 3.0 22 14-35 72-93 (347)
384 3trf_A Shikimate kinase, SK; a 97.0 0.00042 1.4E-08 49.3 3.2 21 14-34 6-26 (185)
385 2v54_A DTMP kinase, thymidylat 97.0 0.00048 1.6E-08 49.8 3.5 22 13-34 4-25 (204)
386 3iij_A Coilin-interacting nucl 97.0 0.00041 1.4E-08 49.2 3.0 23 12-34 10-32 (180)
387 1via_A Shikimate kinase; struc 97.0 0.00038 1.3E-08 49.2 2.8 20 15-34 6-25 (175)
388 2c95_A Adenylate kinase 1; tra 97.0 0.00048 1.6E-08 49.4 3.3 22 13-34 9-30 (196)
389 1gvn_B Zeta; postsegregational 97.0 0.00057 1.9E-08 52.5 3.8 25 10-34 30-54 (287)
390 2pez_A Bifunctional 3'-phospho 97.0 0.00056 1.9E-08 48.5 3.6 24 11-34 3-26 (179)
391 2yhs_A FTSY, cell division pro 97.0 0.00039 1.3E-08 57.2 3.0 23 12-34 292-314 (503)
392 1ixz_A ATP-dependent metallopr 97.0 0.00042 1.4E-08 52.1 3.0 19 16-34 52-70 (254)
393 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00044 1.5E-08 50.9 3.1 20 15-34 25-44 (235)
394 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.0005 1.7E-08 47.4 3.1 20 15-34 25-44 (149)
395 1e4v_A Adenylate kinase; trans 96.9 0.00046 1.6E-08 50.5 3.0 20 15-34 2-21 (214)
396 2oap_1 GSPE-2, type II secreti 96.9 0.00041 1.4E-08 57.7 3.0 21 14-34 261-281 (511)
397 3r20_A Cytidylate kinase; stru 96.9 0.00052 1.8E-08 51.0 3.3 23 12-34 8-30 (233)
398 2wwf_A Thymidilate kinase, put 96.9 0.00053 1.8E-08 49.9 3.2 23 12-34 9-31 (212)
399 3euj_A Chromosome partition pr 96.9 0.00046 1.6E-08 56.8 3.0 21 14-34 30-50 (483)
400 1xjc_A MOBB protein homolog; s 96.9 0.00066 2.3E-08 47.8 3.4 21 14-34 5-25 (169)
401 2pt5_A Shikimate kinase, SK; a 96.9 0.00061 2.1E-08 47.6 3.2 20 15-34 2-21 (168)
402 3cwq_A Para family chromosome 96.9 0.00083 2.8E-08 49.0 4.1 85 61-150 67-153 (209)
403 1nn5_A Similar to deoxythymidy 96.9 0.00059 2E-08 49.7 3.3 22 13-34 9-30 (215)
404 3sr0_A Adenylate kinase; phosp 96.9 0.00064 2.2E-08 49.6 3.3 20 15-34 2-21 (206)
405 2vli_A Antibiotic resistance p 96.9 0.00038 1.3E-08 49.4 2.0 23 12-34 4-26 (183)
406 1vht_A Dephospho-COA kinase; s 96.9 0.00071 2.4E-08 49.6 3.6 22 13-34 4-25 (218)
407 2ze6_A Isopentenyl transferase 96.9 0.00057 2E-08 51.5 3.0 20 15-34 3-22 (253)
408 1zd8_A GTP:AMP phosphotransfer 96.9 0.00061 2.1E-08 50.3 3.1 21 14-34 8-28 (227)
409 1nij_A Hypothetical protein YJ 96.9 0.00042 1.4E-08 54.0 2.3 22 15-36 6-27 (318)
410 1in4_A RUVB, holliday junction 96.8 0.00056 1.9E-08 53.7 2.9 21 14-34 52-72 (334)
411 2z0h_A DTMP kinase, thymidylat 96.8 0.00062 2.1E-08 48.9 3.0 20 15-34 2-21 (197)
412 1iy2_A ATP-dependent metallopr 96.8 0.0006 2E-08 52.0 3.0 19 16-34 76-94 (278)
413 2xb4_A Adenylate kinase; ATP-b 96.8 0.00071 2.4E-08 49.9 3.2 20 15-34 2-21 (223)
414 2p5t_B PEZT; postsegregational 96.8 0.00058 2E-08 51.4 2.8 25 10-34 29-53 (253)
415 1gtv_A TMK, thymidylate kinase 96.8 0.00028 9.4E-09 51.5 0.9 20 15-34 2-21 (214)
416 1cr0_A DNA primase/helicase; R 96.8 0.0006 2.1E-08 52.5 2.8 21 15-35 37-57 (296)
417 2pbr_A DTMP kinase, thymidylat 96.8 0.00078 2.7E-08 48.2 3.2 20 15-34 2-21 (195)
418 2bwj_A Adenylate kinase 5; pho 96.8 0.00077 2.6E-08 48.4 3.1 21 14-34 13-33 (199)
419 2dpy_A FLII, flagellum-specifi 96.8 0.00069 2.3E-08 55.2 3.0 21 14-34 158-178 (438)
420 4ido_A Atlastin-1; GTPase, GTP 96.8 0.0031 1.1E-07 51.2 6.7 65 10-74 64-152 (457)
421 1jbk_A CLPB protein; beta barr 96.8 0.00092 3.1E-08 47.4 3.3 22 13-34 43-64 (195)
422 1e6c_A Shikimate kinase; phosp 96.8 0.00081 2.8E-08 47.2 3.0 20 15-34 4-23 (173)
423 1n0w_A DNA repair protein RAD5 96.7 0.00085 2.9E-08 49.8 3.1 22 14-35 25-46 (243)
424 2iyv_A Shikimate kinase, SK; t 96.7 0.00083 2.9E-08 47.7 3.0 20 15-34 4-23 (184)
425 2f6r_A COA synthase, bifunctio 96.7 0.0011 3.6E-08 50.8 3.7 24 11-34 73-96 (281)
426 2cvh_A DNA repair and recombin 96.7 0.00088 3E-08 48.9 3.1 22 14-35 21-42 (220)
427 1zak_A Adenylate kinase; ATP:A 96.7 0.00079 2.7E-08 49.5 2.8 21 14-34 6-26 (222)
428 3nwj_A ATSK2; P loop, shikimat 96.7 0.00079 2.7E-08 50.6 2.7 21 13-33 48-68 (250)
429 1qf9_A UMP/CMP kinase, protein 96.7 0.0012 4.1E-08 47.1 3.6 21 14-34 7-27 (194)
430 3be4_A Adenylate kinase; malar 96.7 0.00093 3.2E-08 49.0 3.1 21 14-34 6-26 (217)
431 2grj_A Dephospho-COA kinase; T 96.7 0.0011 3.7E-08 47.8 3.3 24 11-34 10-33 (192)
432 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0009 3.1E-08 50.6 3.0 21 14-34 5-25 (260)
433 1zuh_A Shikimate kinase; alpha 96.7 0.0011 3.8E-08 46.3 3.2 19 15-33 9-27 (168)
434 3umf_A Adenylate kinase; rossm 96.7 0.0011 3.6E-08 48.8 3.1 24 11-34 26-50 (217)
435 1ak2_A Adenylate kinase isoenz 96.6 0.0013 4.4E-08 48.8 3.5 21 14-34 17-37 (233)
436 3ake_A Cytidylate kinase; CMP 96.6 0.0013 4.5E-08 47.5 3.4 19 15-33 4-22 (208)
437 1lv7_A FTSH; alpha/beta domain 96.6 0.0011 3.8E-08 49.8 3.0 21 14-34 46-66 (257)
438 2iw3_A Elongation factor 3A; a 96.6 0.00088 3E-08 59.6 2.7 49 152-207 899-947 (986)
439 4eaq_A DTMP kinase, thymidylat 96.6 0.0017 5.8E-08 48.1 3.9 23 12-34 25-47 (229)
440 1m7g_A Adenylylsulfate kinase; 96.6 0.0016 5.5E-08 47.5 3.7 22 12-33 24-45 (211)
441 1nlf_A Regulatory protein REPA 96.6 0.0011 3.9E-08 50.5 2.9 21 15-35 32-52 (279)
442 3bos_A Putative DNA replicatio 96.5 0.0014 4.9E-08 48.3 3.2 22 13-34 52-73 (242)
443 1svm_A Large T antigen; AAA+ f 96.5 0.0012 4.2E-08 52.6 2.9 22 13-34 169-190 (377)
444 1qhl_A Protein (cell division 96.5 0.0002 6.8E-09 53.1 -1.6 19 16-34 30-48 (227)
445 2p65_A Hypothetical protein PF 96.5 0.0011 3.7E-08 46.8 2.4 22 13-34 43-64 (187)
446 3qks_A DNA double-strand break 96.5 0.0015 5E-08 47.5 3.1 20 15-34 25-44 (203)
447 1q3t_A Cytidylate kinase; nucl 96.5 0.0017 5.8E-08 48.2 3.5 25 10-34 13-37 (236)
448 2w58_A DNAI, primosome compone 96.5 0.0016 5.6E-08 46.9 3.3 21 14-34 55-75 (202)
449 1tf7_A KAIC; homohexamer, hexa 96.5 0.0013 4.6E-08 54.8 2.9 19 15-33 41-59 (525)
450 2px0_A Flagellar biosynthesis 96.5 0.0014 4.9E-08 50.5 2.8 22 13-34 105-126 (296)
451 2h92_A Cytidylate kinase; ross 96.4 0.0016 5.6E-08 47.6 2.8 23 12-34 2-24 (219)
452 3gmt_A Adenylate kinase; ssgci 96.4 0.0021 7.2E-08 47.5 3.3 23 12-34 7-29 (230)
453 1pzn_A RAD51, DNA repair and r 96.4 0.0017 5.7E-08 51.4 2.9 22 14-35 132-153 (349)
454 1ltq_A Polynucleotide kinase; 96.4 0.0019 6.4E-08 49.7 3.0 22 14-35 3-24 (301)
455 3n70_A Transport activator; si 96.4 0.0021 7.3E-08 43.9 3.0 23 12-34 23-45 (145)
456 3qkt_A DNA double-strand break 96.4 0.002 6.9E-08 50.7 3.1 41 164-209 262-302 (339)
457 2dr3_A UPF0273 protein PH0284; 96.3 0.002 6.9E-08 47.8 2.9 21 15-35 25-45 (247)
458 1tue_A Replication protein E1; 96.3 0.0019 6.6E-08 46.8 2.5 20 15-34 60-79 (212)
459 3b9p_A CG5977-PA, isoform A; A 96.3 0.0024 8.1E-08 49.0 3.1 23 12-34 53-75 (297)
460 4aby_A DNA repair protein RECN 96.3 0.00073 2.5E-08 54.6 0.2 19 15-33 62-80 (415)
461 1njg_A DNA polymerase III subu 96.3 0.0024 8.2E-08 46.9 3.1 20 15-34 47-66 (250)
462 3cf0_A Transitional endoplasmi 96.3 0.0023 7.7E-08 49.4 2.9 22 13-34 49-70 (301)
463 1a7j_A Phosphoribulokinase; tr 96.2 0.0013 4.5E-08 50.5 1.5 22 13-34 5-26 (290)
464 3h4m_A Proteasome-activating n 96.2 0.0026 8.8E-08 48.5 3.1 22 13-34 51-72 (285)
465 2chg_A Replication factor C sm 96.2 0.0027 9.1E-08 46.0 3.1 20 15-34 40-59 (226)
466 3t15_A Ribulose bisphosphate c 96.2 0.003 1E-07 48.6 3.5 23 12-34 35-57 (293)
467 3syl_A Protein CBBX; photosynt 96.2 0.0032 1.1E-07 48.5 3.6 23 11-33 65-87 (309)
468 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0026 8.8E-08 47.8 3.0 22 13-34 39-60 (262)
469 2o5v_A DNA replication and rep 96.2 0.0025 8.6E-08 50.5 3.0 46 158-208 267-321 (359)
470 1p5z_B DCK, deoxycytidine kina 96.2 0.0018 6.3E-08 48.9 2.1 24 10-33 21-44 (263)
471 4fcw_A Chaperone protein CLPB; 96.2 0.0041 1.4E-07 47.9 4.1 23 12-34 46-68 (311)
472 1e69_A Chromosome segregation 96.2 0.0019 6.4E-08 50.4 2.1 45 159-208 222-270 (322)
473 3zvl_A Bifunctional polynucleo 96.2 0.0045 1.5E-07 50.1 4.4 23 12-34 257-279 (416)
474 3exa_A TRNA delta(2)-isopenten 96.2 0.0037 1.3E-07 48.4 3.6 22 13-34 3-24 (322)
475 1w1w_A Structural maintenance 96.2 0.0027 9.1E-08 51.6 2.9 47 158-209 335-385 (430)
476 1l8q_A Chromosomal replication 96.1 0.0029 9.9E-08 49.3 2.9 21 14-34 38-58 (324)
477 1sxj_E Activator 1 40 kDa subu 96.1 0.0024 8.1E-08 50.3 2.4 19 16-34 39-57 (354)
478 1d2n_A N-ethylmaleimide-sensit 96.1 0.0044 1.5E-07 46.9 3.8 24 11-34 62-85 (272)
479 2qmh_A HPR kinase/phosphorylas 96.1 0.0026 8.8E-08 45.9 2.3 26 9-34 30-55 (205)
480 3cr8_A Sulfate adenylyltranfer 96.1 0.0025 8.7E-08 53.4 2.4 23 12-34 368-390 (552)
481 2qby_A CDC6 homolog 1, cell di 96.1 0.0032 1.1E-07 49.9 2.9 22 13-34 45-66 (386)
482 3lda_A DNA repair protein RAD5 96.0 0.0033 1.1E-07 50.6 2.9 20 15-34 180-199 (400)
483 1fnn_A CDC6P, cell division co 96.0 0.004 1.4E-07 49.5 3.3 20 15-34 46-65 (389)
484 1sxj_C Activator 1 40 kDa subu 96.0 0.0038 1.3E-07 49.0 3.0 20 15-34 48-67 (340)
485 3d3q_A TRNA delta(2)-isopenten 96.0 0.0038 1.3E-07 48.9 3.0 21 14-34 8-28 (340)
486 3crm_A TRNA delta(2)-isopenten 96.0 0.004 1.4E-07 48.4 3.0 21 14-34 6-26 (323)
487 3co5_A Putative two-component 96.0 0.0021 7.3E-08 43.8 1.3 20 13-32 27-46 (143)
488 3eie_A Vacuolar protein sortin 96.0 0.0055 1.9E-07 47.7 3.8 23 12-34 50-72 (322)
489 4edh_A DTMP kinase, thymidylat 95.9 0.0055 1.9E-07 44.8 3.5 23 11-33 4-26 (213)
490 1ewq_A DNA mismatch repair pro 95.9 0.0037 1.3E-07 54.4 2.9 20 15-34 578-597 (765)
491 3ld9_A DTMP kinase, thymidylat 95.9 0.006 2E-07 44.9 3.6 28 7-34 15-42 (223)
492 1ofh_A ATP-dependent HSL prote 95.9 0.0044 1.5E-07 47.7 3.0 22 13-34 50-71 (310)
493 3tqf_A HPR(Ser) kinase; transf 95.9 0.0047 1.6E-07 43.5 2.8 27 9-35 12-38 (181)
494 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.0042 1.4E-07 48.5 2.9 23 12-34 44-66 (322)
495 1wb9_A DNA mismatch repair pro 95.9 0.004 1.4E-07 54.5 3.0 21 14-34 608-628 (800)
496 3hws_A ATP-dependent CLP prote 95.9 0.0057 2E-07 48.4 3.7 24 11-34 49-72 (363)
497 4ag6_A VIRB4 ATPase, type IV s 95.9 0.005 1.7E-07 49.3 3.3 25 11-35 33-57 (392)
498 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0058 2E-07 48.1 3.5 21 13-33 24-44 (359)
499 4b4t_K 26S protease regulatory 95.9 0.0046 1.6E-07 50.1 3.0 21 14-34 207-227 (428)
500 3lv8_A DTMP kinase, thymidylat 95.8 0.0055 1.9E-07 45.6 3.2 25 10-34 24-48 (236)
No 1
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=3.3e-37 Score=231.27 Aligned_cols=213 Identities=76% Similarity=1.227 Sum_probs=188.7
Q ss_pred CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC
Q 027593 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (221)
Q Consensus 6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 85 (221)
++....+.+||+|+|.+|||||||+++|+.+.+...+.++.|.+.......+.+..+.+.+|||||++.+...+..+++.
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 34456788999999999999999999988888888888999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 165 (221)
++++++|||+++..+|..+..|+..+....++.|+++|+||+|+.+.....+...++...+++++++||++|.|++++|.
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999999888889999999999999876666666677888899999999999999999999
Q ss_pred HHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCCCCCCc
Q 027593 166 YLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 218 (221)
Q Consensus 166 ~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (221)
+|.+.+...+.......|...+++...+....++....++..+...++++|||
T Consensus 168 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 220 (221)
T 3gj0_A 168 WLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 220 (221)
T ss_dssp HHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhhccCCCCCCCC
Confidence 99999999999988899999999999999999999999999999999888776
No 2
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8.8e-37 Score=227.50 Aligned_cols=174 Identities=29% Similarity=0.524 Sum_probs=138.2
Q ss_pred CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (221)
|+-..+...++++|||+|+|.+|||||||+++|+.+.+...+.+|.|.++......+++..+.+.+|||+|+++|...+.
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 56666667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCC
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~ 157 (221)
.|++.++++++|||+++..+|.++..|+..+.... ++.|++||+||+|+.+ +.+.. +..+++...++.|+++||++|
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg 160 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG 160 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCC
Confidence 99999999999999999999999999999887764 6799999999999975 44444 455788899999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 027593 158 YNFEKPFLYLARKLAGD 174 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~~ 174 (221)
.|++++|..|++.+...
T Consensus 161 ~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 161 YNVKQLFRRVAAALPGM 177 (216)
T ss_dssp BSHHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHHhh
Confidence 99999999999987643
No 3
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5.2e-31 Score=193.45 Aligned_cols=172 Identities=33% Similarity=0.566 Sum_probs=150.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.++.++|+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999888888888999888888888888899999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
++|+|+++..++..+..|+..+.... .+.|+++|+||+|+..+.... +...++...+++++++||+++.|++++|.+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998887654 478999999999997655443 445677788899999999999999999999
Q ss_pred HHHHHhCCCCCcccc
Q 027593 167 LARKLAGDPNLHFVE 181 (221)
Q Consensus 167 l~~~l~~~~~~~~~~ 181 (221)
|.+.+...+..+..+
T Consensus 172 l~~~~~~~~~~~~~~ 186 (195)
T 1x3s_A 172 LVEKIIQTPGLWESE 186 (195)
T ss_dssp HHHHHHTSGGGTCC-
T ss_pred HHHHHHhhhhhhccc
Confidence 999998876655433
No 4
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.98 E-value=3.2e-31 Score=197.76 Aligned_cols=169 Identities=20% Similarity=0.340 Sum_probs=140.8
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
....++.+||+|+|++|||||||+++|+.+.+...+.++.+.++ .....+++..+.+.+|||+|++.+...+..+++.+
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 34567789999999999999999999999998888888888766 45666777889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhcc-HHHHHHHHHhhcCCCCEEEEEeCCCCCc-------------ccccH-HHHHHHHhcCc-eEE
Q 027593 87 QCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYY 150 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~i~v~nk~D~~~-------------~~~~~-~~~~~~~~~~~-~~~ 150 (221)
+++++|||+++..+|.. +..|+..+....++.|+++|+||+|+.. +.+.. +...++...++ +++
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 99999999999999998 6899999988888999999999999965 23333 34577888888 999
Q ss_pred EeecCCCCC-hHHHHHHHHHHHhCCCC
Q 027593 151 EISAKSNYN-FEKPFLYLARKLAGDPN 176 (221)
Q Consensus 151 ~~s~~~~~~-i~~~~~~l~~~l~~~~~ 176 (221)
++||++|.| ++++|..|++.+...+.
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred EeccCCCcccHHHHHHHHHHHHhccCc
Confidence 999999998 99999999999876553
No 5
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.98 E-value=8e-31 Score=190.71 Aligned_cols=168 Identities=32% Similarity=0.524 Sum_probs=142.9
Q ss_pred CCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccccc
Q 027593 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI 84 (221)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 84 (221)
.......+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++
T Consensus 10 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 88 (183)
T 3kkq_A 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88 (183)
T ss_dssp ----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH
T ss_pred cCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh
Confidence 3344567799999999999999999999998888877788887666 666777888899999999999999999999999
Q ss_pred CccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecC-CCCC
Q 027593 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAK-SNYN 159 (221)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~-~~~~ 159 (221)
.+|++++|+|++++.+|..+..|...+.... .+.|+++|+||+|+.+ +.... +...++...+++++++||+ ++.|
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLN 168 (183)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCC
Confidence 9999999999999999999999988886643 5789999999999865 33333 3457778888999999999 9999
Q ss_pred hHHHHHHHHHHHhC
Q 027593 160 FEKPFLYLARKLAG 173 (221)
Q Consensus 160 i~~~~~~l~~~l~~ 173 (221)
++++|..|.+.+.+
T Consensus 169 v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 169 VDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998753
No 6
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.98 E-value=1.3e-30 Score=186.70 Aligned_cols=163 Identities=31% Similarity=0.601 Sum_probs=143.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+++|++|||||||+++|+.+.+...+.++.+.++......+++....+.+|||||+..+...+..++..+++++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988888777888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
+|+|+++..++..+..|+..+.....+.|+++|+||+|+... ... .+...++...+++++++|++++.|++++|.+|.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence 999999999999999999988777678999999999998653 333 334467777889999999999999999999999
Q ss_pred HHHhC
Q 027593 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+.+
T Consensus 163 ~~~~~ 167 (168)
T 1z2a_A 163 EKHLQ 167 (168)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98764
No 7
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=2.3e-30 Score=187.20 Aligned_cols=166 Identities=31% Similarity=0.622 Sum_probs=140.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.++|+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+|||||++.+...+..++..++++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 44679999999999999999999998888877888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCcccccHH-HHHHHH-hcCceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~~~~~~-~~~~~~-~~~~~~~~~s~~~~~~i~~ 162 (221)
++|+|+++..++..+..|...+.... .+.|+++|+||+|+..+....+ ...++. ..+++++++||++|.|+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA 163 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999998887654 5789999999999975544443 335555 5678999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 027593 163 PFLYLARKLAGDP 175 (221)
Q Consensus 163 ~~~~l~~~l~~~~ 175 (221)
+|.+|.+.+...+
T Consensus 164 l~~~l~~~~~~~~ 176 (177)
T 1wms_A 164 AFEEAVRRVLATE 176 (177)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887643
No 8
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=187.59 Aligned_cols=164 Identities=32% Similarity=0.557 Sum_probs=143.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+.+..+.+.+|||||++.+...+..++..+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 34679999999999999999999888888777788888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-cc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
++|+|++++.++..+..|+..+....++.|+++|+||+|+.... .. .+...++...+++++++||++|.|++++|.+|
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999998887889999999999987533 23 34456777888999999999999999999999
Q ss_pred HHHHhC
Q 027593 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+..
T Consensus 166 ~~~~~~ 171 (181)
T 3tw8_B 166 TELVLR 171 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 9
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-30 Score=187.40 Aligned_cols=162 Identities=33% Similarity=0.590 Sum_probs=141.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
++.+||+++|++|||||||+++++.+.+...+.++.+.++......+++....+.+|||||+..+...+..+++.+|+++
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 46799999999999999999999988888778889998888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc----cccH-HHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR----QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~----~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 164 (221)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||++|.|++++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999998887764 57899999999998642 2332 3446667778999999999999999999
Q ss_pred HHHHHHHh
Q 027593 165 LYLARKLA 172 (221)
Q Consensus 165 ~~l~~~l~ 172 (221)
.+|.+.+.
T Consensus 161 ~~l~~~i~ 168 (170)
T 1ek0_A 161 LGIGEKIP 168 (170)
T ss_dssp HHHHTTSC
T ss_pred HHHHHHHh
Confidence 99987653
No 10
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=1.6e-30 Score=186.55 Aligned_cols=163 Identities=33% Similarity=0.597 Sum_probs=143.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.++.+||+++|++|+|||||+++|+.+.+...+.++.+.++......+.+....+.+||+||+..+...+..++..++++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45679999999999999999999998888887888999888888888888899999999999999999889999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
++|+|++++.++..+..|+..+.... +..|+++|+||+|+... ... .+...++...+++++++||++|.|++++|.+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988887663 57899999999998653 333 3445677778899999999999999999999
Q ss_pred HHHHHh
Q 027593 167 LARKLA 172 (221)
Q Consensus 167 l~~~l~ 172 (221)
|.+.+.
T Consensus 163 i~~~~~ 168 (170)
T 1r2q_A 163 IAKKLP 168 (170)
T ss_dssp HHHTSC
T ss_pred HHHHHh
Confidence 998654
No 11
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=2.5e-30 Score=185.70 Aligned_cols=163 Identities=29% Similarity=0.532 Sum_probs=136.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+|+|++|+|||||+++|+.+.+...+.++.+.+.......+++..+.+.+|||||++.+...+..++..+++++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999988887777888888888778888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.+|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876654 57899999999999653 3333 4456777788999999999999999999999
Q ss_pred HHHHhC
Q 027593 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1z08_A 164 CKRMIE 169 (170)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 998764
No 12
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=8.3e-31 Score=193.69 Aligned_cols=167 Identities=34% Similarity=0.539 Sum_probs=136.8
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
...+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+++
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 34557999999999999999999999888877777788877777778888888999999999999999888999999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCc-eEEEeecCCCCChHHHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~-~~~~~s~~~~~~i~~~~ 164 (221)
+++|||+++..+|..+..|+..+.... .+.|+++|+||+|+.. +.... +..+++...++ +++++||++|.|++++|
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999998887765 5799999999999975 33333 34567777888 99999999999999999
Q ss_pred HHHHHHHhCCC
Q 027593 165 LYLARKLAGDP 175 (221)
Q Consensus 165 ~~l~~~l~~~~ 175 (221)
.+|.+.+....
T Consensus 185 ~~l~~~i~~~~ 195 (201)
T 2hup_A 185 LRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999886543
No 13
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=4e-30 Score=188.87 Aligned_cols=165 Identities=25% Similarity=0.411 Sum_probs=142.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.+||+++|.+|+|||||+++|+.+.+...+.++.+.++.. ...+++..+.+.+|||||++.+...+..+++.++++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 4567999999999999999999999998877778888766654 566788889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCc---ccccH-HHHHHHHhcCce-EEEeecCCCCChHHH
Q 027593 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN---RQVKA-KQVTFHRKKNLQ-YYEISAKSNYNFEKP 163 (221)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~---~~~~~-~~~~~~~~~~~~-~~~~s~~~~~~i~~~ 163 (221)
++|+|+++..+|..+ ..|...+....++.|+++|+||+|+.. +.... +...++...++. ++++||++|.|++++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEV 178 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHH
Confidence 999999999999997 678888887778899999999999864 23333 345677778887 999999999999999
Q ss_pred HHHHHHHHhCCC
Q 027593 164 FLYLARKLAGDP 175 (221)
Q Consensus 164 ~~~l~~~l~~~~ 175 (221)
|.+|.+.+...+
T Consensus 179 ~~~l~~~i~~~~ 190 (194)
T 3reg_A 179 FEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHCSC
T ss_pred HHHHHHHHHhcC
Confidence 999999987654
No 14
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=3.5e-30 Score=184.86 Aligned_cols=163 Identities=28% Similarity=0.512 Sum_probs=143.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.+||+++|++|+|||||+++++.+.+...+.++.+.++......+.+....+.+|||||++.+...+..++..++++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999888888888999998888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
++|+|+++..++..+..|+..+... .+..|+++|+||+|+... .... +...++...+++++++||++|.|++++|.+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 9999999999999999998888776 467899999999999753 3333 344667778899999999999999999999
Q ss_pred HHHHHh
Q 027593 167 LARKLA 172 (221)
Q Consensus 167 l~~~l~ 172 (221)
|.+.+.
T Consensus 163 i~~~i~ 168 (170)
T 1z0j_A 163 ISRRIP 168 (170)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 998764
No 15
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=2.9e-30 Score=187.28 Aligned_cols=166 Identities=34% Similarity=0.543 Sum_probs=143.2
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
...+.+||+|+|++|+|||||+++|+.+.+.....++.+.++......+.+....+.+|||||+..+...+..+++.+++
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 45678999999999999999999999888887777888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 165 (221)
+++|+|+++..++..+..|+..+.... ++.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|.
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 999999999999999999998887764 5789999999999964 33333 34567777889999999999999999999
Q ss_pred HHHHHHhCC
Q 027593 166 YLARKLAGD 174 (221)
Q Consensus 166 ~l~~~l~~~ 174 (221)
+|.+.+...
T Consensus 168 ~l~~~~~~~ 176 (181)
T 2efe_B 168 EIARRLPRV 176 (181)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhc
Confidence 999876543
No 16
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=2.5e-30 Score=185.64 Aligned_cols=163 Identities=28% Similarity=0.549 Sum_probs=137.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.+||+|+|++|+|||||+++|+.+.+...+.++.+.++......+.+..+.+.+||+||++.+...+..++..++++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999888877777888877877778888888999999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
|+|+++..++..+..|+..+.... .+.|+++|+||+|+..+....+ ...++...+++++++||++|.|++++|.+|.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998887765 5789999999999965544443 44667778899999999999999999999999
Q ss_pred HHhCC
Q 027593 170 KLAGD 174 (221)
Q Consensus 170 ~l~~~ 174 (221)
.+..+
T Consensus 162 ~~~~~ 166 (170)
T 1g16_A 162 LIQEK 166 (170)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88643
No 17
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=1.2e-29 Score=185.48 Aligned_cols=164 Identities=26% Similarity=0.522 Sum_probs=144.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+....+.+|||||++.+...+..++..++++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 34569999999999999999999998888777788888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999998887764 57999999999999653 3333 345677778899999999999999999999
Q ss_pred HHHHHhC
Q 027593 167 LARKLAG 173 (221)
Q Consensus 167 l~~~l~~ 173 (221)
|.+.+.+
T Consensus 179 l~~~i~~ 185 (189)
T 2gf9_A 179 LVDVICE 185 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 18
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=4e-30 Score=186.10 Aligned_cols=163 Identities=33% Similarity=0.539 Sum_probs=143.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||++.+...+..++..+++++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 45799999999999999999999988888778888888888888888888899999999999999988899999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +..+++...+++++++||++|.|++++|.+|
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887765 58899999999999643 3333 4456777788999999999999999999999
Q ss_pred HHHHhC
Q 027593 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+.+
T Consensus 173 ~~~i~~ 178 (179)
T 1z0f_A 173 AKKIYQ 178 (179)
T ss_dssp HHHHC-
T ss_pred HHHHhh
Confidence 998753
No 19
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=6.3e-30 Score=187.39 Aligned_cols=165 Identities=32% Similarity=0.544 Sum_probs=140.6
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
...+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 45668999999999999999999999888877777788888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 165 (221)
+++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||+++.|++++|.
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887764 58999999999999652 3333 34567777889999999999999999999
Q ss_pred HHHHHHhC
Q 027593 166 YLARKLAG 173 (221)
Q Consensus 166 ~l~~~l~~ 173 (221)
+|.+.+.+
T Consensus 177 ~l~~~i~~ 184 (191)
T 2a5j_A 177 NTAKEIYR 184 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 20
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=7.9e-30 Score=187.35 Aligned_cols=165 Identities=30% Similarity=0.550 Sum_probs=146.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 34579999999999999999999999888888888999889888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... ... .+...++...+++++++||++|.|++++|.+
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998887764 47899999999998653 333 3445677888999999999999999999999
Q ss_pred HHHHHhCC
Q 027593 167 LARKLAGD 174 (221)
Q Consensus 167 l~~~l~~~ 174 (221)
|.+.+...
T Consensus 173 l~~~i~~~ 180 (196)
T 3tkl_A 173 MAAEIKKR 180 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 21
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.6e-30 Score=189.67 Aligned_cols=164 Identities=29% Similarity=0.501 Sum_probs=144.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+|+|++|+|||||+++|+.+.+...+.++.+.++......+.+....+.+|||||++.+...+..++..+++++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 45799999999999999999999988887788899999998888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|+|+++..++..+..|+..+.... .+.|+++|+||+|+.. +.... +..+++...+++++++||+++.|++++|.+|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 9999999999999999998887764 4789999999999965 33333 4456777788999999999999999999999
Q ss_pred HHHHhCC
Q 027593 168 ARKLAGD 174 (221)
Q Consensus 168 ~~~l~~~ 174 (221)
.+.+...
T Consensus 181 ~~~i~~~ 187 (192)
T 2fg5_A 181 SRQIPPL 187 (192)
T ss_dssp HHTCC--
T ss_pred HHHHHhh
Confidence 9976543
No 22
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=4.8e-30 Score=187.50 Aligned_cols=163 Identities=21% Similarity=0.342 Sum_probs=135.5
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
.+.+.+||+|+|.+|||||||+++|+.+.+...+.++.+.++ .....+++..+.+.+|||+|++.+... ..+++.+++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 456789999999999999999999999988888888888665 445677888899999999999988775 678899999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeec-CCCCChH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISA-KSNYNFE 161 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~-~~~~~i~ 161 (221)
+++|||+++..+|..+..|+..+.... .+.|+++|+||+|+.. +.+.. +..+++...+++++++|| ++|.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999998887664 6899999999999965 33333 445777888999999999 8999999
Q ss_pred HHHHHHHHHHhC
Q 027593 162 KPFLYLARKLAG 173 (221)
Q Consensus 162 ~~~~~l~~~l~~ 173 (221)
++|..|++.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 23
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.7e-30 Score=189.63 Aligned_cols=163 Identities=34% Similarity=0.605 Sum_probs=143.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+++++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 34699999999999999999999999888888888888888888888888899999999999999988899999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|||+++..+|..+..|+..+.... .+.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|.+|
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887764 4789999999999964 33333 3445667778999999999999999999999
Q ss_pred HHHHhC
Q 027593 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
++.+..
T Consensus 184 ~~~i~~ 189 (201)
T 2ew1_A 184 ACRLIS 189 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 24
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=8e-30 Score=185.11 Aligned_cols=164 Identities=25% Similarity=0.334 Sum_probs=142.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+|+|++|+|||||+++|+.+.+...+.++.+.++ .....+++..+.+.+|||||++.+...+..+++.+++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4579999999999999999999998888888888888777 666778888899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
+|||+++..++..+..|...+.... .+.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|..
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999998886664 4789999999999864 33333 445778888999999999999999999999
Q ss_pred HHHHHhCCC
Q 027593 167 LARKLAGDP 175 (221)
Q Consensus 167 l~~~l~~~~ 175 (221)
|.+.+....
T Consensus 163 l~~~~~~~~ 171 (181)
T 3t5g_A 163 IILEAEKMD 171 (181)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHhc
Confidence 999987654
No 25
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=2.5e-30 Score=187.12 Aligned_cols=166 Identities=27% Similarity=0.469 Sum_probs=140.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-eEEEEEEEeCCCcccccccccccccCccE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
.++.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+.+ ....+.+|||||++.+...+..++..+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45789999999999999999999998887766677887777777777766 57899999999999999999999999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhc---CCCC-EEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVC---ENIP-IVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p-~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~ 162 (221)
+++|+|++++.++..+..|+..+.... ...| +++|+||+|+.. +.... +...++...+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999988876643 2555 799999999975 33333 34466777789999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 027593 163 PFLYLARKLAGDP 175 (221)
Q Consensus 163 ~~~~l~~~l~~~~ 175 (221)
+|.+|.+.+...+
T Consensus 163 l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 163 CFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999887654
No 26
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=6e-30 Score=183.10 Aligned_cols=163 Identities=29% Similarity=0.527 Sum_probs=136.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
+|+.+||+++|++|+|||||+++++.+.+...+.++.+..+ .....+++..+.+.+||+||+..+...+..++..++++
T Consensus 1 S~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 79 (168)
T 1u8z_A 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 79 (168)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEE
Confidence 46789999999999999999999998887777777776554 34556778889999999999999888889999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 165 (221)
++|+|+++..++..+..|...+..... +.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T 1u8z_A 80 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFF 159 (168)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 999999999999999999888877654 8999999999999653 3333 44566777789999999999999999999
Q ss_pred HHHHHHhC
Q 027593 166 YLARKLAG 173 (221)
Q Consensus 166 ~l~~~l~~ 173 (221)
+|.+.+.+
T Consensus 160 ~l~~~i~~ 167 (168)
T 1u8z_A 160 DLMREIRA 167 (168)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998754
No 27
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=8.2e-30 Score=182.43 Aligned_cols=161 Identities=32% Similarity=0.560 Sum_probs=136.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
|+.+||+++|++|||||||+++++.+.+...+.++.+..+. ....+++..+.+.+|||||+..+...+..++..+++++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999988887777777775543 45667778899999999999999999899999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhc-CceEEEeecCCCCChHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~ 165 (221)
+|+|++++.++..+..|...+.... .+.|+++|+||+|+.+. .... +...++... +.+++++||++|.|++++|.
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 9999999999999999988887653 58999999999999653 2333 334556665 78999999999999999999
Q ss_pred HHHHHHh
Q 027593 166 YLARKLA 172 (221)
Q Consensus 166 ~l~~~l~ 172 (221)
+|.+.+.
T Consensus 160 ~l~~~i~ 166 (167)
T 1c1y_A 160 DLVRQIN 166 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998764
No 28
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=8.3e-30 Score=185.58 Aligned_cols=165 Identities=27% Similarity=0.480 Sum_probs=139.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
+++.++|+++|++|+|||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..++..++++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 46789999999999999999999998888777777776444 44567788889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcCc-eEEEee
Q 027593 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEIS 153 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~~-~~~~~s 153 (221)
++|+|++++.++..+. .|...+....++.|+++|+||+|+... .+.. +...++...+. +++++|
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 9999999999999887 788888877778999999999998642 1222 33456666776 999999
Q ss_pred cCCCCChHHHHHHHHHHHhCCC
Q 027593 154 AKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 154 ~~~~~~i~~~~~~l~~~l~~~~ 175 (221)
|++|.|++++|.+|.+.+...+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCccCHHHHHHHHHHHHhccc
Confidence 9999999999999999886544
No 29
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.7e-29 Score=183.11 Aligned_cols=166 Identities=28% Similarity=0.556 Sum_probs=135.2
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCcc
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (221)
...+.++|+|+|++|+|||||+++|+.+.+. ..+.++.+.++......+++..+.+.+|||||++.+...+..++..++
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3456799999999999999999999888774 356678888887777788888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 164 (221)
++++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||+++.|++++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998887765 57899999999999753 3333 3446677778999999999999999999
Q ss_pred HHHHHHHhCC
Q 027593 165 LYLARKLAGD 174 (221)
Q Consensus 165 ~~l~~~l~~~ 174 (221)
.+|.+.+...
T Consensus 166 ~~l~~~~~~~ 175 (180)
T 2g6b_A 166 TAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 30
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7e-30 Score=191.64 Aligned_cols=177 Identities=29% Similarity=0.483 Sum_probs=137.6
Q ss_pred CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (221)
|.-+.......+.++|+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+.
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS 80 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence 33333333345679999999999999999999998888777778888888888888888889999999999999999999
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCC
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~ 157 (221)
.+++.++++++|||+++..+|..+..|+..+.... .+.|+++|+||+|+.. +.+.. +...++...+++++++||+++
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999999999999998887764 4789999999999965 33333 345677778899999999999
Q ss_pred CChHHHHHHHHHHHhCCCCC
Q 027593 158 YNFEKPFLYLARKLAGDPNL 177 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~~~~~ 177 (221)
.|++++|.+|.+.+......
T Consensus 161 ~gi~~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 161 ENVDKAFEELINTIYQKVSK 180 (223)
T ss_dssp CCHHHHHHHHHHHHTTCC--
T ss_pred CCHHHHHHHHHHHHHHHhhh
Confidence 99999999999998875543
No 31
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=190.80 Aligned_cols=166 Identities=27% Similarity=0.513 Sum_probs=131.8
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCcc
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (221)
....+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+++....+.+|||||++.+...+..++..+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 34556899999999999999999999988887777888888888888888888899999999999999888888999999
Q ss_pred EEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-------ccccH-HHHHHHHhcCceEEEeecCCCC
Q 027593 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-------RQVKA-KQVTFHRKKNLQYYEISAKSNY 158 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-------~~~~~-~~~~~~~~~~~~~~~~s~~~~~ 158 (221)
++++|+|+++..++..+..|+..+.... .+.|+++|+||+|+.. +.+.. +...++...+++++++||++|.
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 9999999999999999999988887654 4789999999999852 22333 3346677778999999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 027593 159 NFEKPFLYLARKLAG 173 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~ 173 (221)
|++++|.+|.+.+.+
T Consensus 183 gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 183 NIVEAVLHLAREVKK 197 (199)
T ss_dssp THHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
No 32
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=5.9e-30 Score=186.58 Aligned_cols=162 Identities=21% Similarity=0.395 Sum_probs=134.1
Q ss_pred CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC
Q 027593 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (221)
Q Consensus 6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 85 (221)
.....++.+||+|+|++|||||||+++|+.+.+...+.++.+ .+ ...+.+++..+.+.+|||+|++.+. +++.
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~ 85 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW 85 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence 344577899999999999999999999999988777766633 33 4677888888999999999998766 7888
Q ss_pred ccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCC---cccccH-HHHHHHHhcC-ceEEEeecCCCC
Q 027593 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK---NRQVKA-KQVTFHRKKN-LQYYEISAKSNY 158 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~---~~~~~~-~~~~~~~~~~-~~~~~~s~~~~~ 158 (221)
++++++|||+++..+|..+..|+..+.... .+.|+++|+||+|+. .+.+.. +...++...+ +.++++||++|.
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 999999999999999999999999887763 478999999999984 233333 3446777776 899999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 027593 159 NFEKPFLYLARKLAGD 174 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~ 174 (221)
|++++|.+|++.+...
T Consensus 166 gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 166 NVERVFQDVAQKVVAL 181 (184)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999987643
No 33
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=1.7e-29 Score=187.16 Aligned_cols=165 Identities=35% Similarity=0.645 Sum_probs=142.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.++|+|+|++|+|||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||+..+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45679999999999999999999998888888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCcccccHH-HHHHHH-hcCceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~~~~~~-~~~~~~-~~~~~~~~~s~~~~~~i~~ 162 (221)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+..+....+ ...++. ..+++++++||++|.|+++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999988876654 4789999999999985544443 334554 5678999999999999999
Q ss_pred HHHHHHHHHhCC
Q 027593 163 PFLYLARKLAGD 174 (221)
Q Consensus 163 ~~~~l~~~l~~~ 174 (221)
+|.+|.+.+...
T Consensus 165 l~~~l~~~~~~~ 176 (207)
T 1vg8_A 165 AFQTIARNALKQ 176 (207)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
No 34
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.2e-29 Score=186.24 Aligned_cols=162 Identities=24% Similarity=0.372 Sum_probs=138.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.+||+++|++|+|||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.++++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 34679999999999999999999998888777777776554 34566677789999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcCc-eEEEee
Q 027593 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEIS 153 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~~-~~~~~s 153 (221)
++|||++++.+|..+. .|+..+....++.|+++|+||+|+... .... +...++...++ +++++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 9999999999999987 788888887778999999999999653 2222 34466667777 899999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q 027593 154 AKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 154 ~~~~~~i~~~~~~l~~~l~ 172 (221)
|++|.|++++|.+|.+.+.
T Consensus 174 a~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999875
No 35
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=6.6e-30 Score=184.92 Aligned_cols=165 Identities=29% Similarity=0.550 Sum_probs=142.0
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCcc
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (221)
..+++.++|+|+|++|||||||+++|+.+.+...+.++.+.+.......+.+..+.+.+|||||+..+...+..++..++
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 34577899999999999999999999988888777888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 164 (221)
++++|+|++++.++..+..|+..+.... .+.|+++|+||+|+... ... .+...++...+++++++|+++|.|++++|
T Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988887654 47899999999998653 333 33446667778999999999999999999
Q ss_pred HHHHHHHh
Q 027593 165 LYLARKLA 172 (221)
Q Consensus 165 ~~l~~~l~ 172 (221)
.+|.+.+.
T Consensus 169 ~~l~~~~~ 176 (179)
T 2y8e_A 169 RRVAAALP 176 (179)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHh
Confidence 99988653
No 36
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=7.7e-30 Score=185.87 Aligned_cols=163 Identities=24% Similarity=0.408 Sum_probs=137.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..++..++++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999998888777777877655 34566777889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccHH-HHHHHHhcC-ceEEEee
Q 027593 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKN-LQYYEIS 153 (221)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~~-~~~~~~~~~-~~~~~~s 153 (221)
++|||++++.+|..+ ..|...+....++.|+++|+||+|+... .+..+ ...++...+ .+++++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 999999999999988 6888888777778999999999999642 23333 345666666 7999999
Q ss_pred cC-CCCChHHHHHHHHHHHhC
Q 027593 154 AK-SNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 154 ~~-~~~~i~~~~~~l~~~l~~ 173 (221)
|+ ++.|++++|..+.+.+..
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHT
T ss_pred ecCCCcCHHHHHHHHHHHHhc
Confidence 99 689999999999998764
No 37
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=6.3e-30 Score=187.07 Aligned_cols=165 Identities=30% Similarity=0.554 Sum_probs=138.8
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc-ccccccccCc
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHG 86 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~ 86 (221)
...++.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 345678999999999999999999999888888788888888888888888888999999999999887 7888889999
Q ss_pred cEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCC---CC
Q 027593 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSN---YN 159 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~---~~ 159 (221)
+++++|+|+++..++..+..|...+.... .+.|+++|+||+|+... .... +...++...+++++++|++++ .+
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~ 174 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 174 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence 99999999999999999999999887764 57999999999999653 3333 344677778899999999999 99
Q ss_pred hHHHHHHHHHHHh
Q 027593 160 FEKPFLYLARKLA 172 (221)
Q Consensus 160 i~~~~~~l~~~l~ 172 (221)
++++|.+|++.+.
T Consensus 175 i~~l~~~l~~~i~ 187 (189)
T 1z06_A 175 VEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 38
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=185.64 Aligned_cols=164 Identities=29% Similarity=0.514 Sum_probs=143.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||++.+...+..++..++++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34579999999999999999999998888777788888888888888888899999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... ... .+...++...+++++++||++|.|++++|.+
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET 181 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988887654 57899999999999653 333 3345667778899999999999999999999
Q ss_pred HHHHHhC
Q 027593 167 LARKLAG 173 (221)
Q Consensus 167 l~~~l~~ 173 (221)
|.+.+..
T Consensus 182 l~~~i~~ 188 (193)
T 2oil_A 182 VLKEIFA 188 (193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 39
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=3.3e-30 Score=187.45 Aligned_cols=163 Identities=29% Similarity=0.558 Sum_probs=114.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 35799999999999999999998888777667778887887777888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|+|++++.+|..+..|+..+.... .+.|+++|+||+|+.+. .... +...++...+++++++||++|.|++++|.+|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887763 57899999999999753 3333 3456777788999999999999999999999
Q ss_pred HHHHhC
Q 027593 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+..
T Consensus 166 ~~~i~~ 171 (183)
T 2fu5_C 166 ARDIKA 171 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 40
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=2.1e-29 Score=186.69 Aligned_cols=164 Identities=29% Similarity=0.538 Sum_probs=144.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45799999999999999999999998888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.+|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 165 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887764 57899999999999753 3333 3446677788999999999999999999999
Q ss_pred HHHHhCC
Q 027593 168 ARKLAGD 174 (221)
Q Consensus 168 ~~~l~~~ 174 (221)
.+.+...
T Consensus 166 ~~~i~~~ 172 (206)
T 2bcg_Y 166 ARQIKES 172 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
No 41
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=5.4e-30 Score=191.50 Aligned_cols=175 Identities=46% Similarity=0.830 Sum_probs=145.0
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCcccccccccccccCcc
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (221)
.....+||+|+|.+|||||||+++|+.+.+...+.++.+.+..........+ .+.+.+|||||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 4567899999999999999999998888887777888888777776665544 489999999999999999999999999
Q ss_pred EEEEEEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCCChHHHH
Q 027593 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~ 164 (221)
++++|+|+++..++..+..|+..+..... +.|+++|+||+|+... ....+ ...++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999988877654 5899999999999764 33333 336677788999999999999999999
Q ss_pred HHHHHHHhCCCCCccccCC
Q 027593 165 LYLARKLAGDPNLHFVESP 183 (221)
Q Consensus 165 ~~l~~~l~~~~~~~~~~ep 183 (221)
.+|.+.+...+.......+
T Consensus 167 ~~l~~~~~~~~~~~~~~~~ 185 (218)
T 4djt_A 167 LHLARIFTGRPDLIFVSNV 185 (218)
T ss_dssp HHHHHHHHCCTTCCBCSCC
T ss_pred HHHHHHHhccccccccccc
Confidence 9999999887665544333
No 42
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-29 Score=187.17 Aligned_cols=162 Identities=27% Similarity=0.545 Sum_probs=143.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++..++++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 46999999999999999999999888877778888988888888888889999999999999998888999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
|+|+++..+|..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.+|.
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998887765 57999999999999753 3333 34467777789999999999999999999999
Q ss_pred HHHhC
Q 027593 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+..
T Consensus 167 ~~i~~ 171 (203)
T 1zbd_A 167 DVICE 171 (203)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 43
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=9.7e-30 Score=189.32 Aligned_cols=165 Identities=27% Similarity=0.450 Sum_probs=138.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.++.+||+|+|++|+|||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 35679999999999999999999998888777777777554 34566777889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc----------ccHHHHHHHHhcCc-eEEEeecCCC
Q 027593 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ----------VKAKQVTFHRKKNL-QYYEISAKSN 157 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~----------~~~~~~~~~~~~~~-~~~~~s~~~~ 157 (221)
++|||++++.+|..+. .|+..+....++.|+++|+||+|+.... ...+...++...+. +++++||++|
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 9999999999999986 7988888777789999999999986532 12234456677775 9999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 027593 158 YNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~~~ 175 (221)
.|++++|.+|.+.+....
T Consensus 165 ~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TTHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHhhhh
Confidence 999999999999987654
No 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=1.7e-29 Score=184.05 Aligned_cols=164 Identities=32% Similarity=0.588 Sum_probs=143.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+|||||++.+...+..++..+++++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999988888777888888888888888888899999999999999888899999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-cccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|+|+++..++..+..|+..+.... .+.|+++|+||+|+.. +... .+...++...+++++++||++|.|++++|.+|
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988877654 5789999999999964 3333 34456777888999999999999999999999
Q ss_pred HHHHhCC
Q 027593 168 ARKLAGD 174 (221)
Q Consensus 168 ~~~l~~~ 174 (221)
.+.+...
T Consensus 168 ~~~~~~~ 174 (186)
T 2bme_A 168 ARKILNK 174 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 45
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=9.3e-30 Score=187.19 Aligned_cols=168 Identities=24% Similarity=0.310 Sum_probs=133.3
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc-cccccccC
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIH 85 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~ 85 (221)
+....+.+||+|+|++|||||||+++|+.........++.+.+.....+.+++..+.+.+|||+|+..+.. .+..+++.
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 34456789999999999999999999754333323334455555566677888889999999999987654 66777889
Q ss_pred ccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChH
Q 027593 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~ 161 (221)
++++++|||++++.+|..+..|+..+.... .+.|+++|+||+|+.. +.+.. +...++...+++++++||++|.|++
T Consensus 97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~ 176 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHH
Confidence 999999999999999999999998887654 4799999999999975 33333 3446777788999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 027593 162 KPFLYLARKLAGD 174 (221)
Q Consensus 162 ~~~~~l~~~l~~~ 174 (221)
++|.+|++.+...
T Consensus 177 ~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 177 ELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
No 46
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=1.5e-29 Score=181.51 Aligned_cols=161 Identities=24% Similarity=0.310 Sum_probs=124.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc-cccccccCccEEEE
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAII 91 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~ 91 (221)
.+||+++|++|||||||+++|+.+........+.+.+.......+++..+.+.+||++|+..+.. .+..+++.++++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 48999999999999999999876666555555566666777777888899999999999988876 66777889999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
|||++++.+|..+..|...+..... +.|+++|+||+|+.+ +.... +...++...+++++++||++|.|++++|.+|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998877654 899999999999974 33343 3446778889999999999999999999999
Q ss_pred HHHHhC
Q 027593 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+..
T Consensus 162 ~~~i~~ 167 (169)
T 3q85_A 162 VRQIRL 167 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 47
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=187.52 Aligned_cols=163 Identities=31% Similarity=0.583 Sum_probs=133.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||+..+...+..++..+++++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 45799999999999999999999988887777788887887778888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|+|+++..++..+..|+..+.... .+.|+++|+||+|+... ... .+...++...+++++++||++|.|++++|.+|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988887654 57999999999999643 333 34456777888999999999999999999999
Q ss_pred HHHHhC
Q 027593 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+..
T Consensus 183 ~~~i~~ 188 (200)
T 2o52_A 183 ARTILN 188 (200)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 48
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=2.4e-29 Score=185.64 Aligned_cols=165 Identities=25% Similarity=0.377 Sum_probs=130.4
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCcc
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (221)
....+.++|+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..++.+++
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 3456789999999999999999999998887777777776444 445667778889999999999999999999999999
Q ss_pred EEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcCc-eEEE
Q 027593 88 CAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYE 151 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~~-~~~~ 151 (221)
++++|||++++.+|..+. .|+..+....++.|+++|+||+|+... .+.. +...++...+. ++++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 999999999999999987 798888887778999999999998642 2222 34456666676 9999
Q ss_pred eecCCCCChHHHHHHHHHHHhC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
+||++|.|++++|.+|.+.+..
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998754
No 49
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=3.3e-29 Score=178.77 Aligned_cols=162 Identities=28% Similarity=0.517 Sum_probs=137.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
|+.++|+++|++|||||||+++++.+.+...+.++.+... .....+++..+.+.+||+||+..+...+..++..+++++
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 79 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence 4679999999999999999999988877766666665433 445667778899999999999988888888999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCcccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|+|+++..++..+..|...+..... +.|+++|+||+|+..+.... +...++...+++++++|+++|.|+++++.+|
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999888877654 79999999999997644433 3456777788999999999999999999999
Q ss_pred HHHHhC
Q 027593 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998754
No 50
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=188.60 Aligned_cols=165 Identities=28% Similarity=0.508 Sum_probs=119.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..++..++++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 45679999999999999999999988887766666665443 44567788889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------ccH-HHHHHHHhcCc-eEEEee
Q 027593 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEIS 153 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~~-~~~~~~~~~~~-~~~~~s 153 (221)
++|||+++..+|..+. .|...+....++.|+++|+||+|+.... +.. +...++...++ +++++|
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 9999999999999986 7888888777789999999999996532 222 23456667777 999999
Q ss_pred cCCCCChHHHHHHHHHHHhCCC
Q 027593 154 AKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 154 ~~~~~~i~~~~~~l~~~l~~~~ 175 (221)
|++|.|++++|.+|.+.+...+
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999887543
No 51
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=9.8e-30 Score=186.57 Aligned_cols=165 Identities=28% Similarity=0.563 Sum_probs=135.5
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
...+.+||+|+|.+|+|||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34567999999999999999999988888777778888888888888888888999999999999998888999999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccHH-HHHHHHhc-CceEEEeecCCCCChHHHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~-~~~~~~~s~~~~~~i~~~~ 164 (221)
+++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... ....+ ...++... +.+++++||++|.|++++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999988887764 47999999999999653 33333 34555553 7899999999999999999
Q ss_pred HHHHHHHhC
Q 027593 165 LYLARKLAG 173 (221)
Q Consensus 165 ~~l~~~l~~ 173 (221)
.+|.+.+.+
T Consensus 182 ~~l~~~i~~ 190 (192)
T 2il1_A 182 LKLVDDILK 190 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 52
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=4.1e-29 Score=185.89 Aligned_cols=164 Identities=28% Similarity=0.529 Sum_probs=141.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.++|+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++..++++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34579999999999999999999998888777788888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCcccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
++|+|+++..++..+..|+..+..... +.|+++|+||+|+..+....+ ...++...+++++++||+++.|++++|.+|
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999988877653 789999999999965444433 346667778899999999999999999999
Q ss_pred HHHHhC
Q 027593 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+..
T Consensus 177 ~~~~~~ 182 (213)
T 3cph_A 177 AKLIQE 182 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 53
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=187.76 Aligned_cols=166 Identities=23% Similarity=0.323 Sum_probs=136.9
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
...+.+||+|+|.+|||||||+++|+.+.+...+.++.+..+ .....+.+..+.+.+|||||++.+...+..++..+++
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 345689999999999999999999999988887778887666 5555666777899999999999999999999999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-cccc-HHHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 164 (221)
+++|||+++..+|..+..|...+.... .+.|+++|+||+|+.. +... .+...++...+++++++||++|.|++++|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF 178 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999998887653 4789999999999864 3333 34457778889999999999999999999
Q ss_pred HHHHHHHhCCC
Q 027593 165 LYLARKLAGDP 175 (221)
Q Consensus 165 ~~l~~~l~~~~ 175 (221)
.+|.+.+....
T Consensus 179 ~~l~~~i~~~~ 189 (201)
T 3oes_A 179 TKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhhh
Confidence 99999887654
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=4.4e-29 Score=184.33 Aligned_cols=162 Identities=30% Similarity=0.490 Sum_probs=138.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-----------------------------
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK----------------------------- 61 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 61 (221)
.+.+||+|+|++|+|||||+++|+.+.+...+.++.+.++....+.+.+..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 457999999999999999999999988887778888877777777666544
Q ss_pred --------EEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593 62 --------IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (221)
Q Consensus 62 --------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~ 133 (221)
..+.+|||||+..+...+..++..+|++++|+|++++.++..+..|+..+..... .|+++|+||+|.....
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDKNKFQ 163 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTCC-CC
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCccccc
Confidence 8999999999999999999999999999999999999999999999888876544 9999999999954444
Q ss_pred ccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 134 VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 134 ~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
... +...++...+++++++||++|.|++++|.+|.+.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 443 4456777788999999999999999999999987753
No 55
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=8.4e-31 Score=192.07 Aligned_cols=165 Identities=26% Similarity=0.512 Sum_probs=145.0
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
...+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||++.+...+..++..+++
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 34567999999999999999999999888877777888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 165 (221)
+++|+|+++..+|..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999999887765 58999999999998653 3333 34567778899999999999999999999
Q ss_pred HHHHHHhC
Q 027593 166 YLARKLAG 173 (221)
Q Consensus 166 ~l~~~l~~ 173 (221)
+|.+.+..
T Consensus 179 ~l~~~i~~ 186 (191)
T 3dz8_A 179 RLVDAICD 186 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 56
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=3e-29 Score=185.66 Aligned_cols=167 Identities=29% Similarity=0.512 Sum_probs=140.8
Q ss_pred CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC
Q 027593 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (221)
Q Consensus 6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 85 (221)
.....++.++|+|+|++|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||||+..+...+..++..
T Consensus 7 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (206)
T 2bov_A 7 KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS 85 (206)
T ss_dssp ----CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred cCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhh
Confidence 444567889999999999999999999998888777777777554 3456677888899999999999998888899999
Q ss_pred ccEEEEEEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChH
Q 027593 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~ 161 (221)
++++++|||+++..++..+..|+..+..... +.|+++|+||+|+... .... +...++...+++++++||++|.|++
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 165 (206)
T 2bov_A 86 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 165 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence 9999999999999999999999988877654 8999999999999753 3333 3456777788999999999999999
Q ss_pred HHHHHHHHHHhC
Q 027593 162 KPFLYLARKLAG 173 (221)
Q Consensus 162 ~~~~~l~~~l~~ 173 (221)
++|.+|.+.+..
T Consensus 166 ~l~~~l~~~i~~ 177 (206)
T 2bov_A 166 KVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
No 57
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=6.8e-29 Score=181.60 Aligned_cols=166 Identities=27% Similarity=0.495 Sum_probs=128.7
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
....++.++|+++|.+|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||+..+...+..++..+
T Consensus 15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (190)
T 3con_A 15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93 (190)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTC
T ss_pred cccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcC
Confidence 34468899999999999999999999998877766666665443 34566777889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccH-HHHHHHHhcCceEEEeecCCCCChHHH
Q 027593 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~ 163 (221)
+++++|+|+++..++..+..|...+.... .+.|+++|+||+|+..+.... +..+++...+++++++|++++.|++++
T Consensus 94 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 94 EGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999988887764 379999999999997644443 345677778899999999999999999
Q ss_pred HHHHHHHHhC
Q 027593 164 FLYLARKLAG 173 (221)
Q Consensus 164 ~~~l~~~l~~ 173 (221)
|.+|.+.+.+
T Consensus 174 ~~~l~~~~~~ 183 (190)
T 3con_A 174 FYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 58
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=1.6e-29 Score=187.37 Aligned_cols=163 Identities=24% Similarity=0.408 Sum_probs=136.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++..++++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 34579999999999999999999999888777777887665 34566677889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccHH-HHHHHHhcC-ceEEEee
Q 027593 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKN-LQYYEIS 153 (221)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~~-~~~~~~~~~-~~~~~~s 153 (221)
++|||+++..+|..+ ..|...+....++.|+++|+||+|+... .+..+ ...++...+ ..++++|
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 183 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence 999999999999998 6898888777778999999999999642 23332 345666666 6999999
Q ss_pred cC-CCCChHHHHHHHHHHHhC
Q 027593 154 AK-SNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 154 ~~-~~~~i~~~~~~l~~~l~~ 173 (221)
|+ ++.|++++|..|.+.+..
T Consensus 184 Ak~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHHHHhh
Confidence 99 688999999999988753
No 59
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=1.4e-30 Score=191.50 Aligned_cols=165 Identities=19% Similarity=0.171 Sum_probs=134.8
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------cCCceeEeeeEEE-EecCeEEEEEEEeCCCccccc
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------EPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFG 76 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~~~ 76 (221)
...+.+||+|+|++|||||||++. +.+.+...+ .++.+.++..... .+++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 345689999999999999999975 666665553 2355555555544 566778999999999999999
Q ss_pred ccccccccCccEEEEEEeCC------ChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eE
Q 027593 77 GLRDGYYIHGQCAIIMFDVT------ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QY 149 (221)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~ 149 (221)
..+..+++.++++++|+|++ +..+|..+..|+..+.....+.|+++|+||+|+.+.....+..+++...++ ++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPV 168 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCE
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceE
Confidence 99999999999999999999 567777777787776544568999999999999876444555677778888 99
Q ss_pred EEeecCCCCChHHHHHHHHHHHhCC
Q 027593 150 YEISAKSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 150 ~~~s~~~~~~i~~~~~~l~~~l~~~ 174 (221)
+++||++|.|++++|.+|.+.+...
T Consensus 169 ~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 169 LEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEEecCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988653
No 60
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=4e-29 Score=183.09 Aligned_cols=164 Identities=29% Similarity=0.528 Sum_probs=140.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEee-eEEEEecCe---------EEEEEEEeCCCcccccccc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCG---------KIRFYCWDTAGQEKFGGLR 79 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~g~~~~~~~~ 79 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++. .....+.+. .+.+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 455799999999999999999999988887777888887777 555666655 7899999999999998888
Q ss_pred cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecC
Q 027593 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAK 155 (221)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~ 155 (221)
..++..+|++++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++|++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 167 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999999999999998887765 58999999999999653 3333 3446677778999999999
Q ss_pred CCCChHHHHHHHHHHHhC
Q 027593 156 SNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 156 ~~~~i~~~~~~l~~~l~~ 173 (221)
++.|++++|.+|.+.+.+
T Consensus 168 ~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 168 NGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998754
No 61
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=2.7e-29 Score=179.73 Aligned_cols=160 Identities=19% Similarity=0.268 Sum_probs=114.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.+||+++|++|||||||+++|+. .......++.+.++ .....+++..+.+.+||++|+..+...+..++..++++++
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGG-VEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCC-C----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcC-ccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 358999999999999999999664 44445556677666 3566778889999999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
|||++++.+|..+..|...+.... .+.|+++|+||+|+.. +....+ ...++...+++++++||++|.|++++|.+|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 999999999999999988887653 5799999999999975 333333 446777788999999999999999999999
Q ss_pred HHHHhC
Q 027593 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+..
T Consensus 159 ~~~~~~ 164 (166)
T 3q72_A 159 VRQIRL 164 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998753
No 62
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=2.8e-29 Score=181.02 Aligned_cols=162 Identities=21% Similarity=0.315 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc--ccccccccccCccE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGYYIHGQC 88 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~ 88 (221)
++.+||+|+|++|||||||+++|+.+.+.. ..++.+.+.....+.+++..+.+.+|||||+.. +......+++.+++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERD-LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcc-ccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 567999999999999999999987766543 345677777777788888889999999999887 45566777889999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 164 (221)
+++|||++++.+|..+..|...+... ..+.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 99999999999999999998887764 24799999999999975 33333 3345667778999999999999999999
Q ss_pred HHHHHHHhC
Q 027593 165 LYLARKLAG 173 (221)
Q Consensus 165 ~~l~~~l~~ 173 (221)
.+|.+.+..
T Consensus 161 ~~l~~~~~~ 169 (175)
T 2nzj_A 161 EGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998753
No 63
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=4.1e-29 Score=181.03 Aligned_cols=164 Identities=30% Similarity=0.515 Sum_probs=140.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.++|+|+|++|||||||+++|+.+.+...+.++.+..+. ....+++....+.+|||||+..+...+..++..++++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 456799999999999999999999998887777778776655 5667777789999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 165 (221)
++|+|+++..++..+..|...+.... .+.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 164 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE 164 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999999988875442 47899999999999753 3333 34466777789999999999999999999
Q ss_pred HHHHHHhCC
Q 027593 166 YLARKLAGD 174 (221)
Q Consensus 166 ~l~~~l~~~ 174 (221)
+|.+.+...
T Consensus 165 ~l~~~~~~~ 173 (181)
T 2fn4_A 165 QLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988653
No 64
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=1.5e-29 Score=180.80 Aligned_cols=161 Identities=29% Similarity=0.524 Sum_probs=137.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
|+.+||+++|++|+|||||+++++.+.+...+.++.+... .....+++....+.+|||||++.+...+..++..+++++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4679999999999999999999998888777777766443 556777888899999999999998888888999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
+|+|+++..++..+..|...+.... .+.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|.+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 9999999999999998888877654 4799999999999864 33333 344667777899999999999999999999
Q ss_pred HHHHHh
Q 027593 167 LARKLA 172 (221)
Q Consensus 167 l~~~l~ 172 (221)
|.+.+.
T Consensus 160 l~~~~~ 165 (167)
T 1kao_A 160 IVRQMN 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=3.3e-29 Score=182.47 Aligned_cols=166 Identities=29% Similarity=0.515 Sum_probs=138.4
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
+..+++.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+.+..+.+.+|||||+..+...+..++..+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (187)
T 2a9k_A 12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90 (187)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence 33467889999999999999999999998888777777776554 34566777788999999999999888889999999
Q ss_pred cEEEEEEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHH
Q 027593 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~ 162 (221)
+++++|+|+++..++..+..|+..+..... +.|+++|+||+|+... .... +...++...+++++++|++++.|+++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 999999999999999999999888877654 7999999999999653 3333 44567778889999999999999999
Q ss_pred HHHHHHHHHhC
Q 027593 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
+|.+|.+.+..
T Consensus 171 l~~~l~~~i~~ 181 (187)
T 2a9k_A 171 VFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 66
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=6.2e-29 Score=183.57 Aligned_cols=160 Identities=29% Similarity=0.481 Sum_probs=135.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
..+||+|+|.+|||||||+++|+.+.+...+.++.+..+.. ...+++..+.+.+|||||++.+...+..++..+|++++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 36899999999999999999999888877777777665543 46677788999999999999999999999999999999
Q ss_pred EEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCccc-------------ccH-HHHHHHHhcCc-eEEEeecC
Q 027593 92 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEISAK 155 (221)
Q Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~~-~~~~~~~~~~~-~~~~~s~~ 155 (221)
|||+++..++..+ ..|...+....++.|+++|+||+|+.... +.. +...++...+. +++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence 9999999999988 57888887777789999999999996531 222 33456666677 89999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 027593 156 SNYNFEKPFLYLARKLA 172 (221)
Q Consensus 156 ~~~~i~~~~~~l~~~l~ 172 (221)
+|.|++++|.+|.+.+.
T Consensus 183 ~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 183 TKEGVREVFEMATRAGL 199 (201)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998765
No 67
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=3.4e-29 Score=181.65 Aligned_cols=164 Identities=27% Similarity=0.549 Sum_probs=125.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
..+.++|+|+|++|||||||+++++.+.+...+.++.+.+.....+.++ +....+.+|||||++.+...+..++..+++
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4567999999999999999999999888877777888877777777766 556899999999999999999999999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCcc--cccH-HHHHHHH-hcCceEEEeecCCCCC
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR--QVKA-KQVTFHR-KKNLQYYEISAKSNYN 159 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~--~~~~-~~~~~~~-~~~~~~~~~s~~~~~~ 159 (221)
+++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +...++. ..+.+++++|+++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 999999999999999999988877654 57899999999999542 2223 3334555 4578999999999999
Q ss_pred hHHHHHHHHHHHhC
Q 027593 160 FEKPFLYLARKLAG 173 (221)
Q Consensus 160 i~~~~~~l~~~l~~ 173 (221)
++++|.+|.+.+.+
T Consensus 165 i~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 165 VDTAFEEIARSALQ 178 (182)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 68
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6.3e-29 Score=184.36 Aligned_cols=164 Identities=28% Similarity=0.457 Sum_probs=132.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.+..+||+|+|.+|||||||+++|+.+.+...+.++.+..+.. ...+++..+.+.+|||||++.+...+..++..++++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 4567999999999999999999999888877666777655543 356777889999999999999999999999999999
Q ss_pred EEEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCccc-------------ccH-HHHHHHHhcCc-eEEEee
Q 027593 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEIS 153 (221)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~~-~~~~~~~~~~~-~~~~~s 153 (221)
++|+|+++..++..+ ..|...+....++.|+++|+||+|+.... +.. +...++...+. .++++|
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 999999999999988 67888887777789999999999986531 222 23355666666 899999
Q ss_pred cCCCCChHHHHHHHHHHHhCC
Q 027593 154 AKSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 154 ~~~~~~i~~~~~~l~~~l~~~ 174 (221)
|++|.|++++|.+|.+.+...
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 69
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=4.1e-29 Score=180.84 Aligned_cols=157 Identities=20% Similarity=0.366 Sum_probs=128.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.++.+||+++|++|||||||+++|+.+.+.. +.++.+..+ ...+.+++..+.+.+|||+|++. ..++++++++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ 76 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAV 76 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEE
Confidence 4678999999999999999999999888866 667777444 55667788889999999999876 4678889999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCC---cccccHH-HHHHHHhc-CceEEEeecCCCCCh
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVK---NRQVKAK-QVTFHRKK-NLQYYEISAKSNYNF 160 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~---~~~~~~~-~~~~~~~~-~~~~~~~s~~~~~~i 160 (221)
++|||++++.+|..+..|...+.... ++.|+++|+||+|+. .+....+ ...++... +++++++||++|.|+
T Consensus 77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 99999999999999999877665542 478999999999983 2333333 34555554 689999999999999
Q ss_pred HHHHHHHHHHHhC
Q 027593 161 EKPFLYLARKLAG 173 (221)
Q Consensus 161 ~~~~~~l~~~l~~ 173 (221)
+++|.+|++.+..
T Consensus 157 ~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 157 DRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 70
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=6.6e-29 Score=181.25 Aligned_cols=163 Identities=28% Similarity=0.520 Sum_probs=137.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+ +.......+++..+.+.+|||||++.+...+..++..+++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999998887776666664 444456677888899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|+|+++..++..+..|...+.... .+.|+++|+||+|+.......+ ...++...+++++++||++|.|++++|.+|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988887754 4799999999999986554444 446777888999999999999999999999
Q ss_pred HHHHhCC
Q 027593 168 ARKLAGD 174 (221)
Q Consensus 168 ~~~l~~~ 174 (221)
.+.+...
T Consensus 161 ~~~~~~~ 167 (189)
T 4dsu_A 161 VREIRKH 167 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988643
No 71
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=6.2e-30 Score=185.69 Aligned_cols=162 Identities=28% Similarity=0.451 Sum_probs=121.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.++.+||+++|++|+|||||+++++.+.+...+.++.+..+.. ...+++..+.+.+|||||++.+...+..+++.++++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 4567999999999999999999999888776666666544332 234455677889999999999999999999999999
Q ss_pred EEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcccc-----------c-HHHHHHHHhcCc-eEEEeecC
Q 027593 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-----------K-AKQVTFHRKKNL-QYYEISAK 155 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-----------~-~~~~~~~~~~~~-~~~~~s~~ 155 (221)
++|+|++++.++..+. .|...+....++.|+++|+||+|+..... . .+...++...+. +++++||+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 9999999999999987 78888887777899999999999864321 2 234466667776 99999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 027593 156 SNYNFEKPFLYLARKLA 172 (221)
Q Consensus 156 ~~~~i~~~~~~l~~~l~ 172 (221)
+|.|++++|.+|.+.+.
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999999765
No 72
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.4e-29 Score=183.13 Aligned_cols=163 Identities=28% Similarity=0.417 Sum_probs=137.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||+.. ...+..++..++++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 46789999999999999999999999888777777777554 45567788889999999999887 66777889999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCC-ChHHHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNY-NFEKPF 164 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~-~i~~~~ 164 (221)
++|||++++.++..+..|...+.... .+.|+++|+||+|+.. +.... +...++...+++++++||++|. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 99999999999999999988887753 5899999999999975 33333 3446777778999999999999 999999
Q ss_pred HHHHHHHhCC
Q 027593 165 LYLARKLAGD 174 (221)
Q Consensus 165 ~~l~~~l~~~ 174 (221)
.+|.+.+.+.
T Consensus 183 ~~l~~~i~~~ 192 (196)
T 2atv_A 183 YELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999987643
No 73
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.96 E-value=6.5e-29 Score=183.93 Aligned_cols=162 Identities=26% Similarity=0.471 Sum_probs=132.7
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
..++.+||+++|.+|||||||+++|+.+.+...+.++.+ +.......+++..+.+.+|||||++.+...+..++..+++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 456789999999999999999999998888777777775 3444566677788899999999999999999999999999
Q ss_pred EEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------ccH-HHHHHHHhcCc-eEEEe
Q 027593 89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEI 152 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~~-~~~~~~~~~~~-~~~~~ 152 (221)
+++|||+++..++..+. .|...+....++.|+++|+||+|+.... ... +...++...+. +++++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 99999999999999987 7888888877889999999999986532 222 33456666665 69999
Q ss_pred ecCCCCChHHHHHHHHHHH
Q 027593 153 SAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 153 s~~~~~~i~~~~~~l~~~l 171 (221)
||++|.|++++|.+|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 74
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=9e-29 Score=182.11 Aligned_cols=163 Identities=26% Similarity=0.418 Sum_probs=137.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.++|+|+|++|||||||+++|+.+.+...+.++.+.++. ....+++..+.+.+|||||+..+...+..++..+++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 45799999999999999999999988887777777765544 34566778889999999999998888888999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
+|||+++..++..+..|...+.... ++.|+++|+||+|+..+.... +...++...+++++++||++|.|++++|.+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 9999999999999888877766543 478999999999997654444 344667777899999999999999999999
Q ss_pred HHHHHhCC
Q 027593 167 LARKLAGD 174 (221)
Q Consensus 167 l~~~l~~~ 174 (221)
|.+.+...
T Consensus 165 l~~~~~~~ 172 (199)
T 2gf0_A 165 LLTLETRR 172 (199)
T ss_dssp HHHHCSSS
T ss_pred HHHHHhhh
Confidence 99977554
No 75
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=1.3e-28 Score=181.19 Aligned_cols=163 Identities=18% Similarity=0.335 Sum_probs=129.1
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
....+.+||+|+|.+|||||||+++|+.+.+.. .+.++.+.+.... .+..+.+.+|||||++.+...+..++..+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 346678999999999999999999998888877 6678887554433 34678999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhccHHHHHHHHHhhc---------CCCCEEEEEeCCCCCcccccHHH---HH---HHHhcCceEEE
Q 027593 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC---------ENIPIVLCGNKVDVKNRQVKAKQ---VT---FHRKKNLQYYE 151 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------~~~p~i~v~nk~D~~~~~~~~~~---~~---~~~~~~~~~~~ 151 (221)
|++++|+|+++..+|..+..|+..+.... .+.|+++|+||+|+.......+. .. .+...++++++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA 167 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence 99999999999999999988888775542 27899999999999764322221 11 11446789999
Q ss_pred eecCCCCChHHHHHHHHHHHhCC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~ 174 (221)
+||++|.|++++|.+|.+.+...
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred eeCCCccCHHHHHHHHHHHHHHH
Confidence 99999999999999999988653
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=1.6e-29 Score=187.25 Aligned_cols=163 Identities=24% Similarity=0.398 Sum_probs=104.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC--CCCCcccCCceeEeeeEEEEecCe--EEEEEEEeCCCcccccccccccccCc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
.+.++|+|+|++|||||||+++|+.+ .+...+.++.+.+.....+.+.+. .+.+.+|||||++.+...+..++..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999998877 666667777777777777777776 89999999999999998999999999
Q ss_pred cEEEEEEeCCChhhhccHHHHHHHHHhhcC----CCCEEEEEeCCCCCc--cccc-HHHHHHHHhcCceEEEeecCC-CC
Q 027593 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN--RQVK-AKQVTFHRKKNLQYYEISAKS-NY 158 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~i~v~nk~D~~~--~~~~-~~~~~~~~~~~~~~~~~s~~~-~~ 158 (221)
|++++|+|++++.+|..+..|+..+..... +.|+++|+||+|+.. +... .+...++...+++++++|+++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999998887654 789999999999975 3333 344567778889999999999 99
Q ss_pred ChHHHHHHHHHHHhC
Q 027593 159 NFEKPFLYLARKLAG 173 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~ 173 (221)
|++++|.+|.+.+..
T Consensus 178 gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 178 DADAPFLSIATTFYR 192 (208)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999997753
No 77
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=3.6e-29 Score=186.88 Aligned_cols=163 Identities=33% Similarity=0.537 Sum_probs=138.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe----------EEEEEEEeCCCccccccccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~g~~~~~~~~~ 80 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+. .+.+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 44699999999999999999999988887766777777777666666655 78999999999999988889
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCC
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKS 156 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~ 156 (221)
.++..+|++++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence 99999999999999999999999888888776543 57899999999999653 3333 34567777889999999999
Q ss_pred CCChHHHHHHHHHHHhC
Q 027593 157 NYNFEKPFLYLARKLAG 173 (221)
Q Consensus 157 ~~~i~~~~~~l~~~l~~ 173 (221)
+.|++++|.+|.+.+..
T Consensus 183 g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 183 GQNVEKAVETLLDLIMK 199 (217)
T ss_dssp TBTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998765
No 78
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.9e-28 Score=175.98 Aligned_cols=160 Identities=25% Similarity=0.426 Sum_probs=132.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.+||+++|++|||||||+++++.+.+...+.++.+.++. .....++....+.+|||||+..+...+..++..++++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 3689999999999999999999988877666677665543 345667778899999999999888888888999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
|+|++++.++..+..|...+.... ++.|+++|+||+|+... .... +...++...+++++++|+++|.|++++|.+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999999888887776653 47999999999998653 3333 344566777889999999999999999999
Q ss_pred HHHHHh
Q 027593 167 LARKLA 172 (221)
Q Consensus 167 l~~~l~ 172 (221)
|.+.+.
T Consensus 161 l~~~~~ 166 (172)
T 2erx_A 161 LLNLEK 166 (172)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 998653
No 79
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=3.2e-28 Score=177.41 Aligned_cols=159 Identities=17% Similarity=0.252 Sum_probs=128.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.++|+++|++|||||||+++++.+. ...+.++.+.+.... .+ .+..+.+|||||++.+...+..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~--~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTL--EH--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEE--EE--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEE--EE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 678999999999999999999988777 666677777554433 33 3589999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCChHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~~ 163 (221)
+|+|++++.++..+..|+..+... ..+.|+++|+||+|+.......+..+. ....+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG 170 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence 999999999999988888777554 357999999999999764322222111 1234678999999999999999
Q ss_pred HHHHHHHHhCC
Q 027593 164 FLYLARKLAGD 174 (221)
Q Consensus 164 ~~~l~~~l~~~ 174 (221)
|.+|.+.+.++
T Consensus 171 ~~~l~~~i~~~ 181 (186)
T 1ksh_A 171 IDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999988754
No 80
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=1.3e-28 Score=179.93 Aligned_cols=160 Identities=23% Similarity=0.394 Sum_probs=129.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.++.+||+|+|++|||||||+++|+.+.+...+.++.+.++... ......+.+|||||++.+...+..++..+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 45579999999999999999999998888777778888766542 33568999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHH-----HHHhcCceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~i~~ 162 (221)
++|+|+++..++..+..|+..+... ..+.|+++|+||+|+.......+... .....+++++++||++|.|+++
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHH
Confidence 9999999999999988888777553 35899999999999975422221111 1123456899999999999999
Q ss_pred HHHHHHHHHhC
Q 027593 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
+|.+|.+.+..
T Consensus 175 l~~~l~~~~~~ 185 (188)
T 1zd9_A 175 TLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHTCC-
T ss_pred HHHHHHHHHHh
Confidence 99999987643
No 81
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4e-28 Score=180.21 Aligned_cols=163 Identities=20% Similarity=0.298 Sum_probs=129.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCC--CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc-ccccccccccCc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHG 86 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~ 86 (221)
..+.+||+|+|.+|||||||+++|+.... ... .++.|.+.....+.+++..+.+.+|||+|+.. +......+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 35679999999999999999999875332 222 23456666666777888889999999999876 445566778899
Q ss_pred cEEEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHH
Q 027593 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~ 162 (221)
+++++|||+++..+|..+..|...+... ..+.|+++|+||+|+.. +.+..+ ...++...+++++++||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999898877653 35799999999999965 334433 3456667789999999999999999
Q ss_pred HHHHHHHHHhC
Q 027593 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
+|.+|++.+..
T Consensus 193 lf~~l~~~i~~ 203 (211)
T 2g3y_A 193 LFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 82
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.3e-28 Score=179.74 Aligned_cols=161 Identities=22% Similarity=0.308 Sum_probs=124.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.++|+++|++|||||||+++++.+.+. .+.++.+.+... +.+ .+..+.+|||||++.+...+..++..+|++
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 87 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEE--IVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFV 87 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEE--EEE--TTEEEEEEECCC----CGGGHHHHTTCCEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 467899999999999999999998877776 556666644333 333 348999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~ 162 (221)
++|+|+++..+|..+..|+..+... ..+.|+++|+||+|+.......+.... ....+++++++||++|.|+++
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 88 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHH
Confidence 9999999999999999888887664 368999999999999753222222221 123467899999999999999
Q ss_pred HHHHHHHHHhCCC
Q 027593 163 PFLYLARKLAGDP 175 (221)
Q Consensus 163 ~~~~l~~~l~~~~ 175 (221)
+|.+|++.+...+
T Consensus 168 l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 168 GLEWMMSRLKIRL 180 (187)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999876554
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.9e-28 Score=178.37 Aligned_cols=162 Identities=21% Similarity=0.333 Sum_probs=124.3
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCC-CCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 85 (221)
.....+.+||+|+|.+|||||||+++|+.+. +...+.++.+... ..+.+ .+..+.+|||||++.+...+..++..
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (190)
T 2h57_A 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSI--EKFKS--SSLSFTVFDMSGQGRYRNLWEHYYKE 90 (190)
T ss_dssp ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEE--EEEEC--SSCEEEEEEECCSTTTGGGGGGGGGG
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeE--EEEEE--CCEEEEEEECCCCHHHHHHHHHHHhc
Confidence 3445678999999999999999999987766 4555566666333 23333 34799999999999999999999999
Q ss_pred ccEEEEEEeCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCcccccHHHHHHHH-----hcCceEEEeecCC
Q 027593 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKS 156 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~ 156 (221)
+|++++|+|+++..++..+..|+..+.... .+.|+++|+||+|+.......+..+... ..+++++++||++
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 999999999999999999888888776543 4789999999999975432222222221 2467899999999
Q ss_pred CCChHHHHHHHHHHHh
Q 027593 157 NYNFEKPFLYLARKLA 172 (221)
Q Consensus 157 ~~~i~~~~~~l~~~l~ 172 (221)
|.|++++|.+|.+.+.
T Consensus 171 ~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TBTHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999998764
No 84
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=1.3e-28 Score=178.93 Aligned_cols=159 Identities=22% Similarity=0.309 Sum_probs=123.1
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
.....+.+||+|+|.+|||||||+++|+.+.+ ..+.++.+.+... +.+ .+..+.+|||||++.+...+..++..+
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE--IVI--NNTRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEE--EEE--TTEEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhccC
Confidence 33456789999999999999999999888776 5566677655433 333 348999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCC
Q 027593 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYN 159 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~ 159 (221)
|++++|+|+++..+|..+..|+..+... ..+.|+++|+||+|+.......+.... ....+++++++||++|.|
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 9999999999999999988888777654 368999999999999763222222111 123456899999999999
Q ss_pred hHHHHHHHHHH
Q 027593 160 FEKPFLYLARK 170 (221)
Q Consensus 160 i~~~~~~l~~~ 170 (221)
++++|.+|.+.
T Consensus 170 i~~l~~~l~~~ 180 (181)
T 2h17_A 170 LCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999998763
No 85
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=2.9e-30 Score=190.39 Aligned_cols=163 Identities=31% Similarity=0.569 Sum_probs=133.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45799999999999999999998887777777778888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCccc-cc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 167 (221)
+|+|+++..+|..+..|+..+.... .+.|+++|+||+|+.... .. .+...++...+++++++||++|.|++++|.+|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999998887654 478999999999986532 22 23456777888999999999999999999999
Q ss_pred HHHHhC
Q 027593 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+..
T Consensus 191 ~~~l~~ 196 (199)
T 3l0i_B 191 AAEIKK 196 (199)
T ss_dssp TTTTTT
T ss_pred HHHHHH
Confidence 887654
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=2.3e-28 Score=180.19 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=117.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.++|+++|++|||||||++++..+.+ ..+.++.+.+. ..+.+++ ..+.+|||||++.++..+..+++.++++
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 96 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGI 96 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCC-CccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEE
Confidence 45678999999999999999999877665 34556666543 2344443 8999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHHH-----------------hcCceEE
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----------------KKNLQYY 150 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~~-----------------~~~~~~~ 150 (221)
++|+|++++.+|..+..|+..+... ..+.|+++|+||+|+.......+..+... ..+++++
T Consensus 97 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 97 VFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 9999999999999999888887654 35899999999999976322222223222 1356899
Q ss_pred EeecCCCCChHHHHHHHHHH
Q 027593 151 EISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 151 ~~s~~~~~~i~~~~~~l~~~ 170 (221)
++||++|.|++++|.+|.+.
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998764
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=1.7e-27 Score=171.10 Aligned_cols=159 Identities=21% Similarity=0.315 Sum_probs=126.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.++|+++|++|+|||||+++++.+.+. .+.++.+..... ..+ ....+.+|||||++.+...+..++..+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVET--VTY--KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE--EEE--TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEE--EEE--CCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 45699999999999999999998877764 345566644433 333 3688999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~~ 163 (221)
+|+|+++..+|..+..|+..+.... .+.|+++|+||+|+.......+.. ......+++++++||++|.|++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA 159 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence 9999999999998888877765542 589999999999997642222111 223345678999999999999999
Q ss_pred HHHHHHHHhCC
Q 027593 164 FLYLARKLAGD 174 (221)
Q Consensus 164 ~~~l~~~l~~~ 174 (221)
|.+|.+.+.++
T Consensus 160 ~~~l~~~i~~~ 170 (171)
T 1upt_A 160 MEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhc
Confidence 99999988654
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=7.9e-28 Score=176.15 Aligned_cols=155 Identities=18% Similarity=0.290 Sum_probs=121.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.++|+++|++|||||||++++..+.+. .+.++.+.+. ..+.++ +..+.+|||||++.+...+..+++.++++
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 94 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS--EELAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNGI 94 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEE--EEEEET--TEEEEEEECCCSGGGTTSGGGGCTTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCe--EEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 356789999999999999999998877764 4556666543 333444 38999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHH-HHHHH------------hcCceEEEeec
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ-VTFHR------------KKNLQYYEISA 154 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~-~~~~~------------~~~~~~~~~s~ 154 (221)
++|+|++++.+|..+..|...+... ..+.|+++|+||+|+... ...+. .+... ..+++++++||
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 95 VFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC-CCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC-CCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999888877653 358999999999999763 22322 22222 24568999999
Q ss_pred CCCCChHHHHHHHHHH
Q 027593 155 KSNYNFEKPFLYLARK 170 (221)
Q Consensus 155 ~~~~~i~~~~~~l~~~ 170 (221)
++|.|++++|.+|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998763
No 89
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=2.5e-27 Score=173.81 Aligned_cols=163 Identities=20% Similarity=0.321 Sum_probs=126.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCC--CCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc-ccccccccccCc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHG 86 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~ 86 (221)
..+.+||+++|.+|||||||+++|+... +...+ ++.+.+.....+.+++..+.+.+|||+|... +......+++.+
T Consensus 3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~ 81 (192)
T 2cjw_A 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 81 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccC
Confidence 4567999999999999999999987532 22222 3455566666777888889999999999776 455667778889
Q ss_pred cEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHH
Q 027593 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~ 162 (221)
+++++|||+++..+|..+..|...+.... .+.|+++|+||+|+.. +....+ ...++...+++++++||++|.|+++
T Consensus 82 ~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 82 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE 161 (192)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence 99999999999999999998888776642 4789999999999864 333333 3355667788999999999999999
Q ss_pred HHHHHHHHHhC
Q 027593 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
+|.+|++.+..
T Consensus 162 lf~~l~~~~~~ 172 (192)
T 2cjw_A 162 LFEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 90
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=5.5e-28 Score=175.63 Aligned_cols=159 Identities=17% Similarity=0.298 Sum_probs=123.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
+.+.++|+++|++|||||||++++..+. ...+.++.|.+... +.++ +..+.+|||||++.+...+..++..++++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~-~~~~~~t~g~~~~~--~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASED-ISHITPTQGFNIKS--VQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSC-CEEEEEETTEEEEE--EEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCC-CCcccCcCCeEEEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 3678999999999999999999976554 34456666644332 3333 57899999999999988888899999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~ 162 (221)
++|+|++++.+|..+..|+..+... ..+.|+++|+||+|+.......+.... ....+++++++||++|.|+++
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHH
Confidence 9999999999999988888776543 357999999999999764322221111 123456899999999999999
Q ss_pred HHHHHHHHHhC
Q 027593 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
+|.+|.+.+.+
T Consensus 168 l~~~l~~~~~~ 178 (181)
T 1fzq_A 168 GMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHHHh
Confidence 99999987643
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=8.5e-28 Score=176.26 Aligned_cols=160 Identities=21% Similarity=0.307 Sum_probs=120.0
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
...+.+||+|+|++|||||||+++++.+.+.. +.++.+.... .+...+..+.+|||||++.+...+..++..+|+
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQG 99 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEEEE----EEEETTEEEEEEECC-----CTTHHHHHHTCCE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCceeEE----EEEECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 45678999999999999999999987776643 3445553222 223356899999999999999988899999999
Q ss_pred EEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChH
Q 027593 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~ 161 (221)
+++|+|++++.++..+..|+..+... ..+.|+++|+||+|+.......+.. ......+++++++||++|.|++
T Consensus 100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 100 LIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 99999999999999988888877553 2579999999999997542212111 1122345689999999999999
Q ss_pred HHHHHHHHHHhC
Q 027593 162 KPFLYLARKLAG 173 (221)
Q Consensus 162 ~~~~~l~~~l~~ 173 (221)
++|.+|.+.+.+
T Consensus 180 ~l~~~l~~~i~~ 191 (192)
T 2b6h_A 180 DGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhc
Confidence 999999997653
No 92
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=8.5e-28 Score=171.54 Aligned_cols=155 Identities=24% Similarity=0.312 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+.. +.++.+... ..+...+..+.+|||||++.+...+..++..+|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE----EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE----EEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999988777654 455555322 223345689999999999999888888999999999999
Q ss_pred eCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
|++++.+|..+..|+..+... ..+.|+++|+||+|+.......+.. ......+++++++||++|.|++++|.+
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence 999999999888888777553 3589999999999997642212111 112234568999999999999999999
Q ss_pred HHHHHhC
Q 027593 167 LARKLAG 173 (221)
Q Consensus 167 l~~~l~~ 173 (221)
|.+.+.+
T Consensus 156 l~~~i~~ 162 (164)
T 1r8s_A 156 LSNQLRN 162 (164)
T ss_dssp HHHHC--
T ss_pred HHHHHhh
Confidence 9987653
No 93
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=5e-28 Score=175.85 Aligned_cols=158 Identities=19% Similarity=0.279 Sum_probs=122.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.++|+++|++|||||||+++++.+.+ ..+.++.+..... ..+ .+..+.+|||||+..+...+..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET--LSY--KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEE--EEE--TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 6789999999999999999999776766 5556677644333 333 3489999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~ 163 (221)
+|+|+++..++..+..|+..+... ..+.|+++|+||+|+.+.....+..... ...+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 999999999999988888877664 3579999999999997642222222211 223468999999999999999
Q ss_pred HHHHHHHHhC
Q 027593 164 FLYLARKLAG 173 (221)
Q Consensus 164 ~~~l~~~l~~ 173 (221)
+.+|.+.+.+
T Consensus 171 ~~~l~~~~~~ 180 (183)
T 1moz_A 171 LDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.95 E-value=3e-28 Score=177.45 Aligned_cols=162 Identities=19% Similarity=0.331 Sum_probs=121.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC--CCCCcccCCceeEeeeEEEEe---cCeEEEEEEEeCCCcccccccccccccCcc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (221)
.+||+|+|++|||||||+++|+.. .+...+.++.|.++......+ ++..+.+.+|||+|++.+...+..++..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999997764 344455667777766655443 235678999999999999888888999999
Q ss_pred EEEEEEeCCCh-hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH-----HHHHHHHhcCce----EEEeecCCC
Q 027593 88 CAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-----KQVTFHRKKNLQ----YYEISAKSN 157 (221)
Q Consensus 88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~-----~~~~~~~~~~~~----~~~~s~~~~ 157 (221)
++++|||++++ .++..+..|+..+....++.|+++|+||+|+....... ....++...+++ ++++||+++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence 99999999997 58999999999887766789999999999997532211 122444455665 999999999
Q ss_pred C-ChHHHHHHHHHHHhCC
Q 027593 158 Y-NFEKPFLYLARKLAGD 174 (221)
Q Consensus 158 ~-~i~~~~~~l~~~l~~~ 174 (221)
. ++++++..|.+.+...
T Consensus 162 ~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 162 SDALAKLRKTIINESLNF 179 (184)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred chhHHHHHHHHHHHHhcc
Confidence 6 9999999999887653
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.95 E-value=8.5e-28 Score=176.77 Aligned_cols=164 Identities=14% Similarity=0.147 Sum_probs=118.8
Q ss_pred CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccc---cc
Q 027593 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLR---DG 81 (221)
Q Consensus 6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~---~~ 81 (221)
....+.+.+||+++|.+|||||||+++ +.+.+..........+.......+. +..+.+.+|||+|++.+.... ..
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKV-VFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHH-HHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHH-HHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 445567789999999999999999997 5555544322222223333333343 566899999999999987776 78
Q ss_pred cccCccEEEEEEeCCCh--hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc--------ccHH-HHHHHH----hcC
Q 027593 82 YYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKAK-QVTFHR----KKN 146 (221)
Q Consensus 82 ~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~--------~~~~-~~~~~~----~~~ 146 (221)
+++.++++++|||+++. .++..+..|+..+....++.|+++|+||+|+.... +..+ ...++. ..+
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 99999999999999997 66666667777665556789999999999986421 1111 224444 567
Q ss_pred ceEEEeecCCCCChHHHHHHHHHHH
Q 027593 147 LQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 147 ~~~~~~s~~~~~~i~~~~~~l~~~l 171 (221)
++++++||++ .|++++|..|++.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8999999999 99999999999865
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=3.7e-27 Score=172.24 Aligned_cols=159 Identities=19% Similarity=0.257 Sum_probs=125.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
.+.+||+++|++|||||||+++++.+.+. .+.++.+..... ... .+..+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLET--LQY--KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEE--EEE--TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 67899999999999999999997766654 345566643332 233 3689999999999999999999999999999
Q ss_pred EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChHHH
Q 027593 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~~ 163 (221)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.......+.. ......+++++++||+++.|++++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG 174 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence 9999999999998888877765542 579999999999997642222211 122334668999999999999999
Q ss_pred HHHHHHHHhCC
Q 027593 164 FLYLARKLAGD 174 (221)
Q Consensus 164 ~~~l~~~l~~~ 174 (221)
|.+|.+.+...
T Consensus 175 ~~~l~~~i~~~ 185 (189)
T 2x77_A 175 MDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999987654
No 97
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.95 E-value=3.3e-26 Score=168.69 Aligned_cols=162 Identities=33% Similarity=0.577 Sum_probs=137.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.++|+|+|++|||||||++++++..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..++..++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 46899999999999999999998888777777888888777788888888999999999999988888888999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
|+|+++..++.++..|...+.... ...|+++++||+|+... ... .+...++...++.++.+|++++.+++++|..|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999888887776543 47899999999999652 222 234567777889999999999999999999999
Q ss_pred HHHhC
Q 027593 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+..
T Consensus 164 ~~~~~ 168 (199)
T 2f9l_A 164 TEIYR 168 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=2.3e-26 Score=181.99 Aligned_cols=162 Identities=25% Similarity=0.446 Sum_probs=137.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (221)
...++|+++|.+|+|||||+++++.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..++..+++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3469999999999999999999998888777777776444 445667788899999999999999999999999999999
Q ss_pred EEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcCc-eEEEeec
Q 027593 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISA 154 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~~-~~~~~s~ 154 (221)
+|||++++.+|..+. .|...+....++.|+++|+||+|+... .... +...++...++ +++++||
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 999999999999887 788888777778999999999998542 2222 33456677776 9999999
Q ss_pred CCCCChHHHHHHHHHHHhC
Q 027593 155 KSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 155 ~~~~~i~~~~~~l~~~l~~ 173 (221)
++|.|++++|..|.+.+..
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999998765
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=2.1e-29 Score=186.51 Aligned_cols=162 Identities=27% Similarity=0.482 Sum_probs=131.3
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (221)
...+.+||+|+|.+|||||||+++|+.+.+...+.++.+... .....+++..+.+.+|||||++.+...+..++..+|+
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 446789999999999999999999888877666666665333 3344556677889999999999999999999999999
Q ss_pred EEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------cc-HHHHHHHHhcCc-eEEEe
Q 027593 89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKNL-QYYEI 152 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~-~~~~~~~~~~~~-~~~~~ 152 (221)
+++|+|++++.++..+. .|...+....++.|+++|+||+|+.... .. .+...++...++ +++++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 99999999999999886 7888777666689999999999996532 11 122345556666 89999
Q ss_pred ecCCCCChHHHHHHHHHHH
Q 027593 153 SAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 153 s~~~~~~i~~~~~~l~~~l 171 (221)
||++|.|++++|..|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999988764
No 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.95 E-value=9.7e-26 Score=165.16 Aligned_cols=160 Identities=33% Similarity=0.574 Sum_probs=138.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.++|+|+|++|||||||+++++...+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..++..++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 46899999999999999999998888877788888888888888888888999999999999988888888999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
|+|+++..+|.++..|...+.... ...|+++++||+|+.+. ... .....++...++.++.+|++++.+++++|..|.
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999888887766543 47899999999999652 222 334567777889999999999999999999998
Q ss_pred HHH
Q 027593 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
+.+
T Consensus 188 ~~i 190 (191)
T 1oix_A 188 TEI 190 (191)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.94 E-value=3.5e-26 Score=163.67 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=109.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc------ccccccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI 84 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~ 84 (221)
|+.++|+++|++|||||||+++|+...+.....++.+.+.....+.+. +..+.+|||||+..+.. ....++.
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 456899999999999999999987765543322222222222233333 46899999999887653 2244554
Q ss_pred --CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593 85 --HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 85 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 161 (221)
.++++++|+|+++... ...|...+.. .+.|+++|+||+|+... ....+...++...+++++++||++|.|++
T Consensus 79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 79 NEKPDLVVNIVDATALER---NLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp HHCCSEEEEEEETTCHHH---HHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred cCCCCEEEEEecCCchhH---hHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 7899999999988643 3346655544 37999999999998542 22223445666778999999999999999
Q ss_pred HHHHHHHHHH
Q 027593 162 KPFLYLARKL 171 (221)
Q Consensus 162 ~~~~~l~~~l 171 (221)
++|.+|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 102
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=5.9e-26 Score=179.34 Aligned_cols=160 Identities=23% Similarity=0.299 Sum_probs=119.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.+||+|+|.+|+|||||+++|+.+.+... .++.+..+ ..+...++.+.+|||||++.+...+..++..+|++
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~----~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~v 236 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 236 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE----EEEEETTEEEEEEECC-----CCSHHHHHTTEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE----EEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 45678999999999999999999877665433 23444333 23344568999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~ 162 (221)
++|||+++..+|..+..|+..+.... ++.|+++|+||+|+.+.....+.... ....+++++++||++|.|+++
T Consensus 237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 99999999999998887777665433 58999999999999764322222211 123456899999999999999
Q ss_pred HHHHHHHHHhCC
Q 027593 163 PFLYLARKLAGD 174 (221)
Q Consensus 163 ~~~~l~~~l~~~ 174 (221)
+|..|.+.+.+.
T Consensus 317 l~~~l~~~l~~~ 328 (329)
T 3o47_A 317 GLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999987653
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=1.2e-25 Score=167.46 Aligned_cols=158 Identities=19% Similarity=0.222 Sum_probs=110.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCcccccc-cccccccCcc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-LRDGYYIHGQ 87 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~~~ 87 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++. .... .+.+++. .+.+.+|||||++.+.. .+..+++.++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 4567999999999999999999999888766554332 2222 2455543 68999999999998887 7788899999
Q ss_pred EEEEEEeCCChh-hhccHHHH-HHHHHhh---cCCCCEEEEEeCCCCCcccccHHH---HH-------------------
Q 027593 88 CAIIMFDVTARL-TYKNVPTW-HRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQ---VT------------------- 140 (221)
Q Consensus 88 ~~i~v~d~~~~~-s~~~~~~~-~~~~~~~---~~~~p~i~v~nk~D~~~~~~~~~~---~~------------------- 140 (221)
++++|+|+++.. ++.....| ...+... ..+.|+++|+||+|+......... ..
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999999854 45554443 3333321 247899999999999753321111 00
Q ss_pred --------------HHH-hc--CceEEEeecCCC------CChHHHHHHHHHH
Q 027593 141 --------------FHR-KK--NLQYYEISAKSN------YNFEKPFLYLARK 170 (221)
Q Consensus 141 --------------~~~-~~--~~~~~~~s~~~~------~~i~~~~~~l~~~ 170 (221)
++. .. +++++++||++| .|++++|.+|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 000 11 678999999999 9999999999875
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=176.12 Aligned_cols=164 Identities=21% Similarity=0.263 Sum_probs=119.4
Q ss_pred ccCCceEEEEEcCC---------CCcHHHHHHHHhcC---CCCCcccCCc-eeEeeeEEE--------------EecCeE
Q 027593 9 VDYPSFKLVIVGDG---------GTGKTTFVKRHLTG---EFEKKYEPTI-GVEVHPLDF--------------FTNCGK 61 (221)
Q Consensus 9 ~~~~~~~i~v~G~~---------g~GKStli~~~~~~---~~~~~~~~~~-~~~~~~~~~--------------~~~~~~ 61 (221)
...+.+||+|+|.+ |||||||+++|+.+ .+...+.++. +.++....+ .+++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 45668999999999 99999999998883 4444433332 222221111 134567
Q ss_pred EEEEEEe-----------------------CCCccccccccccccc---------------------CccEEEEEEeCCC
Q 027593 62 IRFYCWD-----------------------TAGQEKFGGLRDGYYI---------------------HGQCAIIMFDVTA 97 (221)
Q Consensus 62 ~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~ 97 (221)
+.+.+|| ++|++.+...+..++. ++|++++|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 6777777777777777 7999999999999
Q ss_pred h--hhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHHHh-cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 98 R--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 98 ~--~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
+ .+|..+..|+..+... ..+.|+++|+||+|+.......+...++.. .+++++++||++|.|++++|.+|++.+.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 8 9999999999888665 368999999999999653222334455554 4789999999999999999999998764
No 105
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=1.4e-25 Score=175.80 Aligned_cols=170 Identities=17% Similarity=0.174 Sum_probs=131.9
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCccccc----------c
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG----------G 77 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~----------~ 77 (221)
.+.+.-.|+++|.+|||||||+|+|++..+ ....+..+++........... +..+.+|||||...+. .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~-~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKV-SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCc-cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 466778999999999999999999776554 344566777777766655555 7899999999986654 3
Q ss_pred cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC-cccccHHHH-HHHHhcC--ceEEEee
Q 027593 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKN--LQYYEIS 153 (221)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~-~~~~~~~~~-~~~~~~~--~~~~~~s 153 (221)
....++..+|++++|+|+++..++.+...|...+... +.|+++|+||+|+. ......+.. .+....+ .+++++|
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 4456688999999999999988888777777776653 78999999999997 444333333 4445544 7899999
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCcccc
Q 027593 154 AKSNYNFEKPFLYLARKLAGDPNLHFVE 181 (221)
Q Consensus 154 ~~~~~~i~~~~~~l~~~l~~~~~~~~~~ 181 (221)
|++|.|+++++..|.+.+...+..+..+
T Consensus 163 A~~g~gv~~L~~~l~~~l~~~~~~~~~~ 190 (308)
T 3iev_A 163 ALKGANLDELVKTILKYLPEGEPLFPED 190 (308)
T ss_dssp TTTTBSHHHHHHHHHHHSCBCCCSSCTT
T ss_pred CCCCCCHHHHHHHHHHhCccCCCCCCcc
Confidence 9999999999999999988777655433
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.93 E-value=3.3e-25 Score=160.13 Aligned_cols=159 Identities=16% Similarity=0.140 Sum_probs=116.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
..+.++|+|+|++|||||||+++|+.+.+.....++.+.+.....+.+++ ..+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 45679999999999999999999988877665555555455555555554 4678999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHH-------hcC--ceEEEeecCCCCCh
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-------KKN--LQYYEISAKSNYNF 160 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~-------~~~--~~~~~~s~~~~~~i 160 (221)
++|+|+++........ ++..+. ..+.|+++|+||+|+..... .+...... ..+ ++++++||++|.|+
T Consensus 83 i~v~d~~~~~~~~~~~-~l~~~~--~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVE-AINHAK--AANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp EEEEETTCCCCHHHHH-HHHHHG--GGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred EEEEECCCCCcHHHHH-HHHHHH--hCCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 9999998843222211 122222 23789999999999975321 11111111 122 58999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 027593 161 EKPFLYLARKLAGD 174 (221)
Q Consensus 161 ~~~~~~l~~~l~~~ 174 (221)
+++|.+|.+.+...
T Consensus 159 ~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 159 DHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999987653
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=5.5e-25 Score=183.16 Aligned_cols=161 Identities=20% Similarity=0.284 Sum_probs=126.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (221)
.++.+||+|+|.+|||||||+++|+.+.+. .+.+|.+.++.. +...++.+.+|||+|++.+...+..++..+|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE----EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEE----EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 456799999999999999999998887754 345566655443 344668999999999999999999999999999
Q ss_pred EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHH-----HHHhcCceEEEeecCCCCChHH
Q 027593 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~i~~ 162 (221)
++|||++++.+|..+..|+..+... ..+.|+++|+||+|+.......+... .....+++++++||++|.|+++
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 473 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 473 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHH
Confidence 9999999999999998888877553 25899999999999975432222111 1122356799999999999999
Q ss_pred HHHHHHHHHhCCC
Q 027593 163 PFLYLARKLAGDP 175 (221)
Q Consensus 163 ~~~~l~~~l~~~~ 175 (221)
+|.+|.+.+....
T Consensus 474 l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 474 GLTWLTSNYKSKL 486 (497)
T ss_dssp HHHHHHHHCC---
T ss_pred HHHHHHHHHHhcC
Confidence 9999999875543
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.93 E-value=2.8e-25 Score=174.00 Aligned_cols=158 Identities=20% Similarity=0.270 Sum_probs=121.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCC---CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc-----cccccccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYY 83 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~ 83 (221)
..+||+++|.+|||||||+++++.+... ..+.+|.+..+.. ..+. +++.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFL-GNMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEET-TTEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeC-CceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999997766322 1233444444433 2233 3689999999999988 77888889
Q ss_pred cCccEEEEEEeCCChhhhccHHHHHHHHH---hhcCCCCEEEEEeCCCCCcc--c-----cc-HHHHHHHHhcC---ceE
Q 027593 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLC---RVCENIPIVLCGNKVDVKNR--Q-----VK-AKQVTFHRKKN---LQY 149 (221)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~---~~~~~~p~i~v~nk~D~~~~--~-----~~-~~~~~~~~~~~---~~~ 149 (221)
+.++++++|+|+++..+|.++..|...+. ...++.|+++|+||+|+... . .. .+..+++...+ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877755543 34568999999999999762 1 11 23346667776 799
Q ss_pred EEeecCCCCChHHHHHHHHHHHhC
Q 027593 150 YEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 150 ~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
+++||++ .++.++|..+++.+..
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEeeecC-ChHHHHHHHHHHHHcC
Confidence 9999999 8999999988887654
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=4.3e-25 Score=160.99 Aligned_cols=160 Identities=16% Similarity=0.184 Sum_probs=116.9
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc------ccccc
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGY 82 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~ 82 (221)
..++.++|+++|++|||||||+++|+.+.+.....++.+.+.....+.. .+..+.+|||||+..+.. .+..+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY--NGEKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe--CCcEEEEEECCCcCccccccHHHHHHHHH
Confidence 4578899999999999999999998766544333333333333333333 357899999999887642 33445
Q ss_pred cc--CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHHHHHHHhcCceEEEeecCCCCC
Q 027593 83 YI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYN 159 (221)
Q Consensus 83 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (221)
+. .++++++|+|+++. .....|...+.. .+.|+++|+||+|+... ........++...+++++++|++++.|
T Consensus 81 ~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATAL---ERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHHHCCSEEEEEEEGGGH---HHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBS
T ss_pred HhccCCCEEEEEecchhH---HHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCC
Confidence 53 48999999998763 445566666554 37899999999998643 233344566677789999999999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 027593 160 FEKPFLYLARKLAGDP 175 (221)
Q Consensus 160 i~~~~~~l~~~l~~~~ 175 (221)
++++|.+|.+.+....
T Consensus 156 v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 156 IEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999886654
No 110
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.92 E-value=9.8e-25 Score=164.11 Aligned_cols=161 Identities=12% Similarity=0.077 Sum_probs=111.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc---------ccccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDG 81 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~ 81 (221)
...++|+|+|++|||||||+++|+.+.+.. .+..+++.......+......+.+|||||+.... .....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDV--QSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEE--ECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 457999999999999999999988766542 2233333333333333234789999999984211 11233
Q ss_pred cccCccEEEEEEeCCChhhhccH--HHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHH----HHHHHHhcC--ceEEEe
Q 027593 82 YYIHGQCAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAK----QVTFHRKKN--LQYYEI 152 (221)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~----~~~~~~~~~--~~~~~~ 152 (221)
++..++++++|+|+++..+|... ..|+..+....++.|+++|+||+|+... ....+ ...++...+ ++++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 46778999999999999888622 2455555444458999999999999653 33222 234555555 899999
Q ss_pred ecCCCCChHHHHHHHHHHHhC
Q 027593 153 SAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 153 s~~~~~~i~~~~~~l~~~l~~ 173 (221)
||++|.|++++|.+|.+.+..
T Consensus 185 SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.92 E-value=7.9e-25 Score=160.49 Aligned_cols=157 Identities=13% Similarity=0.185 Sum_probs=107.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC----------cccccccc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR 79 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 79 (221)
....++|+|+|++|||||||+++|+.+.+...+.++.+.+.......+++ .+.+||||| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 44579999999999999999999888776666777777777766555543 689999999 55556666
Q ss_pred cccccCc---cEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH---HH-H-HHHhcCceEEE
Q 027593 80 DGYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QV-T-FHRKKNLQYYE 151 (221)
Q Consensus 80 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~---~~-~-~~~~~~~~~~~ 151 (221)
..++..+ +++++|+|+++..++.... +...+.. .+.|+++|+||+|+........ .. + +....+.++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 6666666 9999999999887766543 2222222 4789999999999976432221 11 1 22234679999
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q 027593 152 ISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~ 172 (221)
+||++|.|++++|.+|.+.+.
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred EEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999998764
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.92 E-value=3.4e-25 Score=169.34 Aligned_cols=156 Identities=12% Similarity=0.072 Sum_probs=119.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc------cccc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY 83 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------~~~~ 83 (221)
+++.++|+++|++|||||||+|+|++..+.. ...+|++.......+...+..+.+|||||...+...+ ..++
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~--~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYV--ANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEE--EECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcc--cCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 3567999999999999999999987766542 3344666666666665556899999999988766532 4454
Q ss_pred --cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593 84 --IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 84 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 160 (221)
..+|++++|+|+++..+.. .|...+... +.|+++|+||+|+.. +....+...++..++++++++||++|.|+
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQSL---YLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGL 154 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHHH---HHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTH
T ss_pred hhcCCCEEEEEeCCCchhhHH---HHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCH
Confidence 5899999999999875533 344444433 799999999999854 23333455677788999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027593 161 EKPFLYLARKLA 172 (221)
Q Consensus 161 ~~~~~~l~~~l~ 172 (221)
+++|..|.+.+.
T Consensus 155 ~el~~~i~~~~~ 166 (258)
T 3a1s_A 155 EELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999765
No 113
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.92 E-value=9.9e-26 Score=175.41 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=112.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCc----ccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc---cccccccCcc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQ 87 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~ 87 (221)
||+++|..|||||||++++..+ +.+. ..+|.|..... ++ ..+.+++|||+|+++|.. .+..|+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~-~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~ 74 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN-MQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVG 74 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC-CCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCS
T ss_pred CEEEECCCCCCHHHHHHHHHcC-CCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCC
Confidence 6899999999999999985544 4332 34566655442 22 348899999999999964 3578999999
Q ss_pred EEEEEEeCCChhhhccHHHH---HHHHHhhcCCCCEEEEEeCCCCCccc--------ccHHH-HHHHHh----cCceEEE
Q 027593 88 CAIIMFDVTARLTYKNVPTW---HRDLCRVCENIPIVLCGNKVDVKNRQ--------VKAKQ-VTFHRK----KNLQYYE 151 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~p~i~v~nk~D~~~~~--------~~~~~-~~~~~~----~~~~~~~ 151 (221)
++++|||++++ .+.....| +..+....++.|+++++||+|+.... +..+. .+++.. .++.|++
T Consensus 75 ~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 75 ALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred EEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 99999999998 33333333 44444455789999999999997532 22222 234443 5789999
Q ss_pred eecCCCCChHHHHHHHHHHHhCC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~ 174 (221)
+||++ .++.++|..+++.+..+
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSSTT
T ss_pred eccCC-CcHHHHHHHHHHHHHhh
Confidence 99998 58999999999887654
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.92 E-value=2e-25 Score=160.86 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=108.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEee--eEEEEecCeEEEEEEEeCCCcccccccc--------cc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DG 81 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~ 81 (221)
+.++|+|+|++|||||||+++|...... ...+..+++.. ...+.+++ ..+.+|||||+..+.... ..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAA-IVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-eeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHH
Confidence 5689999999999999999997765432 22233333333 33444443 468999999986543211 13
Q ss_pred cccCccEEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 160 (221)
+++.++++++|+|+++..++. ...|...+.... .+.|+++|+||+|+..... .++...+.+++++||++|.|+
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~gv 153 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGEGV 153 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCTTH
T ss_pred HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCCCH
Confidence 578999999999999998876 346666665543 4789999999999854211 112234678999999999999
Q ss_pred HHHHHHHHHHHh
Q 027593 161 EKPFLYLARKLA 172 (221)
Q Consensus 161 ~~~~~~l~~~l~ 172 (221)
+++|.+|.+.+.
T Consensus 154 ~~l~~~l~~~~~ 165 (172)
T 2gj8_A 154 DVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 115
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=1.2e-24 Score=169.74 Aligned_cols=164 Identities=19% Similarity=0.119 Sum_probs=116.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc--------ccccccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGY 82 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~ 82 (221)
.+..+|+|+|.+|||||||+|+|++..+. ...+.++++.......+...+..+.+|||||.... ......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~-ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVA-PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCcee-eecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 56678999999999999999998766553 23344455555544444445689999999998763 3344566
Q ss_pred ccCccEEEEEEeCCChhhhccHHHHH-HHHHhhcCCCCEEEEEeCCCCCcccc-cHHHHHHHHhcCceEEEeecCCCCCh
Q 027593 83 YIHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~p~i~v~nk~D~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~i 160 (221)
++.+|++++|+|+++..+.. ..|+ ..+....++.|+++|+||+|+..... ..+..+.. ....+++++||++|.|+
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSALDERQV 160 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCTTCHHHH
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeCCCCCCH
Confidence 88999999999999874433 3443 34444335799999999999975322 11111111 22357899999999999
Q ss_pred HHHHHHHHHHHhCCCCCc
Q 027593 161 EKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~~~~ 178 (221)
++++..|.+.+...+.++
T Consensus 161 ~~l~~~l~~~l~~~~~~y 178 (301)
T 1wf3_A 161 AELKADLLALMPEGPFFY 178 (301)
T ss_dssp HHHHHHHHTTCCBCCCSS
T ss_pred HHHHHHHHHhcccCCCCC
Confidence 999999999877666544
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=1.2e-24 Score=154.51 Aligned_cols=151 Identities=21% Similarity=0.175 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc-------cccccccccCc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYIHG 86 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~ 86 (221)
+||+++|++|+|||||+++++.+.+. ......+++.......+...+..+.+|||||+..+ ...+..++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA-VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee-eccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 58999999999999999998876642 22333444433333333323458899999998863 23344568899
Q ss_pred cEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHHHHH
Q 027593 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~ 165 (221)
+++++|+|+++..+... ..+...+.. .+.|+++|+||+|+.+.. .+..++. ..++ +++++||++|.|++++|.
T Consensus 81 ~~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~ 154 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQAD-YEVAEYLRR--KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEELLE 154 (161)
T ss_dssp SEEEEEEESSSCCCHHH-HHHHHHHHH--HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHHHHH
T ss_pred CEEEEEEECCCcccHhH-HHHHHHHHh--cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHHHHH
Confidence 99999999998644322 112222222 378999999999997642 2222333 5566 899999999999999999
Q ss_pred HHHHHH
Q 027593 166 YLARKL 171 (221)
Q Consensus 166 ~l~~~l 171 (221)
+|.+.+
T Consensus 155 ~l~~~l 160 (161)
T 2dyk_A 155 AIWERL 160 (161)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998864
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=9.3e-25 Score=183.10 Aligned_cols=165 Identities=21% Similarity=0.298 Sum_probs=122.0
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEE--------EecCeEEEEEEEeCCCccccccccc
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF--------FTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (221)
..++.+||+++|.+|||||||+++++.+.+...+.++.|.+...... ...+..+.+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 46788999999999999999999999888877777788777665421 1123468999999999999999989
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCC
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNY 158 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~ 158 (221)
.+++.++++++|+|+++. ..+..|...+....++.|+++|+||+|+... ....+ ........+++++++||++|.
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 999999999999998764 6677888888887778999999999999753 33333 345666778899999999999
Q ss_pred ChHHHHHHHHHHHhCCCC
Q 027593 159 NFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~ 176 (221)
|+++++..|.+.+...+.
T Consensus 194 gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp -CTTHHHHHHHHHTCTTS
T ss_pred CHHHHHHHHHHHHhcccc
Confidence 999999999998876554
No 118
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=3e-25 Score=171.19 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=115.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc----------cc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RD 80 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~ 80 (221)
|+.++|+++|.+|||||||+|+|++..+. ....+|++.......+...+..+.+|||||...+... ..
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~--v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEE--EEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcc--cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHH
Confidence 46799999999999999999998766542 3344555555555555545567889999998876632 12
Q ss_pred cc--ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHHHHHHHhcCceEEEeecCCC
Q 027593 81 GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 81 ~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (221)
.+ ...+|++++|+|+++......+..++. .. +.|+++|+||+|+... ........+....+++++++||++|
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLYLTLQLL---EL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGG
T ss_pred HHHhhcCCCEEEEEecCCChHHHHHHHHHHH---hc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 22 268999999999998766544433333 32 8999999999998643 2223345566777899999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 027593 158 YNFEKPFLYLARKLAGD 174 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~~ 174 (221)
.|+++++..|.+.+...
T Consensus 154 ~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 154 RGIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHHHHHTCCCCC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 99999999998876544
No 119
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=2.9e-24 Score=165.55 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=114.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc------cccccc-
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY- 83 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~- 83 (221)
|+.++|+++|++|||||||+|+|++..+... ..++++.......+...+..+.+|||||...+.. ....++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVG--NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEE--ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 5679999999999999999999877655333 3334444444444433445799999999887665 344444
Q ss_pred -cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593 84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 84 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 161 (221)
..+|++++|+|+++... ...|...+... ...|+++|+||+|+.. .........+....+++++++|+++|.|++
T Consensus 79 ~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLMR---NLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp TTCCSEEEEEEEGGGHHH---HHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred ccCCcEEEEEecCCcchh---hHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHH
Confidence 67999999999998642 22233333322 2399999999999854 223333456677788999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 027593 162 KPFLYLARKLAGDP 175 (221)
Q Consensus 162 ~~~~~l~~~l~~~~ 175 (221)
+++..+.+.+....
T Consensus 155 ~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 155 ELKRMIALMAEGKV 168 (271)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999876544
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.91 E-value=7.4e-25 Score=168.42 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=117.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc------ccccccc--
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI-- 84 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~-- 84 (221)
.++|+++|++|||||||+|+|++.... ....+|++.......+.. +..+.+|||||+..+.. ....++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~--v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR--VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC--CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 589999999999999999998765532 334567788777777776 77899999999887652 3345554
Q ss_pred CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHHHHHHHhcCceEEEeecCCCCChHHH
Q 027593 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 163 (221)
.+|++++|+|+++..++. .|...+.. .+.|+++|+||+|+... ....+...+...++++++++||++|.|++++
T Consensus 80 ~~d~vi~V~D~t~~e~~~---~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 80 RADSILNVVDATNLERNL---YLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV 154 (272)
T ss_dssp CCSEEEEEEEGGGHHHHH---HHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEecCCchHhHH---HHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence 699999999999875543 44444443 38999999999998542 3333445667778899999999999999999
Q ss_pred HHHHHHHHh
Q 027593 164 FLYLARKLA 172 (221)
Q Consensus 164 ~~~l~~~l~ 172 (221)
|.+|.+.+.
T Consensus 155 ~~~i~~~~~ 163 (272)
T 3b1v_A 155 VKKAAHTTT 163 (272)
T ss_dssp HHHHHHSCT
T ss_pred HHHHHHHHh
Confidence 999988653
No 121
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.91 E-value=8.4e-24 Score=154.81 Aligned_cols=157 Identities=17% Similarity=0.225 Sum_probs=112.1
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC----------ccccc
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFG 76 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~ 76 (221)
+......++|+|+|++|||||||+++|+.+. ...+.++.+.+......... ..+.+||||| +..+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHH
Confidence 3445667999999999999999999987766 45556677766665544443 3577999999 55555
Q ss_pred ccccccccCc---cEEEEEEeCCChhhhcc--HHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH----HHHHHHh-cC
Q 027593 77 GLRDGYYIHG---QCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRK-KN 146 (221)
Q Consensus 77 ~~~~~~~~~~---~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~----~~~~~~~-~~ 146 (221)
..+..++..+ +++++|+|+++..+... +..|+... +.|+++|+||+|+........ ....... ..
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 5556666555 99999999887643322 22333322 799999999999975332221 2233333 34
Q ss_pred ceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 147 LQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 147 ~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
++++++||++|.|++++|.+|.+.+.
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhh
Confidence 79999999999999999999999764
No 122
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=2.6e-23 Score=170.91 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=98.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc--------cccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYY 83 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 83 (221)
..++|+|+|.+|+|||||+|+|+... ........+++.......+...+..+.+|||||+..+...+ ..++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~-~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQE-RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 35899999999999999999966543 23344556666666544444455789999999987765433 3468
Q ss_pred cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHH
Q 027593 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 163 (221)
..+|++++|+|+++..++..+..+...+.. ..+.|+++|+||+|+....... ...+......+++++||++|.|++++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~~-~~~l~~~~~~~~i~vSAktg~GI~eL 388 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADAL-IRAIADGTGTEVIGISALNGDGIDTL 388 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHH-HHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccchh-HHHHHhcCCCceEEEEECCCCCHHHH
Confidence 899999999999999888654444433332 2379999999999997543221 12222222378999999999999999
Q ss_pred HHHHHHHHh
Q 027593 164 FLYLARKLA 172 (221)
Q Consensus 164 ~~~l~~~l~ 172 (221)
+.+|.+.+.
T Consensus 389 ~~~i~~~~~ 397 (476)
T 3gee_A 389 KQHMGDLVK 397 (476)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHHHHh
Confidence 999999886
No 123
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.91 E-value=1.2e-24 Score=158.68 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC-----------ccccccccccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLRDGY 82 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~ 82 (221)
+||+++|++|||||||+++|+.+.+...+.+ +++.......+. .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCC--CccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999888776544433 444444444433 689999999 55556666666
Q ss_pred ccC-ccEEEEEEeCCChhhhccH-HHHHHH--------HHhh--cCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---
Q 027593 83 YIH-GQCAIIMFDVTARLTYKNV-PTWHRD--------LCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--- 147 (221)
Q Consensus 83 ~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~--- 147 (221)
+.. ++++++|+++.+..++.++ ..|... +... ..+.|+++|+||+|+.... ......++...+.
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 154 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLS 154 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhh
Confidence 766 7777777777777777665 455432 1111 2479999999999997644 2233355555555
Q ss_pred ----eEEEeecCCCCChHHHHHHHHHHHhCCC
Q 027593 148 ----QYYEISAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 148 ----~~~~~s~~~~~~i~~~~~~l~~~l~~~~ 175 (221)
.++++||++|.|++++|.+|.+.+....
T Consensus 155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 155 EIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred ccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 4799999999999999999999886543
No 124
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.91 E-value=3.6e-24 Score=163.41 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc----------cccccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRDGYY 83 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~ 83 (221)
.+|+++|.+|||||||+|+|++..... ...+|++.......+...+..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v--~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRV--GNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEE--EECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCc--cCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 489999999999999999987665433 33345554444444443445899999999876654 334455
Q ss_pred --cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593 84 --IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 84 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~i 160 (221)
..+|++++|+|+++..++..+..++ ... +.|+++|+||+|+.... .......+....+++++++||++|.|+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l---~~~--~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQL---FEL--GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI 154 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHH---TTS--CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHH---HHc--CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 7899999999999976655443333 222 79999999999986432 333344566778899999999999999
Q ss_pred HHHHHHHHHH
Q 027593 161 EKPFLYLARK 170 (221)
Q Consensus 161 ~~~~~~l~~~ 170 (221)
+++|..|.+.
T Consensus 155 ~el~~~i~~~ 164 (256)
T 3iby_A 155 PALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999886
No 125
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.90 E-value=7.6e-24 Score=158.53 Aligned_cols=162 Identities=17% Similarity=0.040 Sum_probs=114.3
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCccc----------ccc
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEK----------FGG 77 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~----------~~~ 77 (221)
.....++|+|+|.+|+|||||+|+|+.+........+.+++.......+. ..+..+.+|||||... +..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 34557899999999999999999988776444556667777766655555 5567899999999432 233
Q ss_pred cccccccC---ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH----HHHHHH-------
Q 027593 78 LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHR------- 143 (221)
Q Consensus 78 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~----~~~~~~------- 143 (221)
....++.. +|++++|+|+++..+.. ...+...+.. .+.|+++|+||+|+........ ..+...
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 44445444 78899999998753322 2234444443 3789999999999976332211 112222
Q ss_pred hcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 144 KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 144 ~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
....+++++||++|.|++++|.+|.+.+..
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 256789999999999999999999998754
No 126
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=2.3e-22 Score=156.90 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=115.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc---------ccccccc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRD 80 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~ 80 (221)
..+..+|+|+|++|||||||+|++++.... ...+.++++.......+...+..+.+|||||.. .+.....
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~-i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKIS-ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEE-ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 355678999999999999999997765432 233444555554444444456789999999987 2345556
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHH-HHHHhcCc-eEEEeecCCC
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNL-QYYEISAKSN 157 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~-~~~~~~~~-~~~~~s~~~~ 157 (221)
.++..+|++++|+|+++ +.....|+..... ..+.|+++++||+|+.. .....+.. .+....+. .++++|++++
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 77889999999999976 3333333322211 13789999999999976 22222222 34444555 7999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCc
Q 027593 158 YNFEKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~~~~~~ 178 (221)
.|++++++.|...+...+..+
T Consensus 160 ~~v~~l~~~i~~~l~~~~~~~ 180 (301)
T 1ega_A 160 LNVDTIAAIVRKHLPEATHHF 180 (301)
T ss_dssp TTHHHHHHHHHTTCCBCCCSS
T ss_pred CCHHHHHHHHHHhCCcCCCCC
Confidence 999999999999877666554
No 127
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.89 E-value=2e-23 Score=169.02 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=110.7
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCcccccccc-------c
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLR-------D 80 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~-------~ 80 (221)
.....++|+|+|+.|+|||||+++|+...+. ......+++.......+... ...+.+|||||+..+.... .
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~-~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVS-IVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence 4556799999999999999999997655442 22344555544443333211 2389999999998776553 3
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 160 (221)
.++..+|++++|+|+... .....|...+... +.|+++|+||+|+...........+....+++++++||++|.|+
T Consensus 109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI 183 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGF 183 (423)
T ss_dssp HHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTST
T ss_pred HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 368889999999998333 2234566666554 89999999999998755444444556667889999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 027593 161 EKPFLYLARKLAGD 174 (221)
Q Consensus 161 ~~~~~~l~~~l~~~ 174 (221)
+++|..|.+.+...
T Consensus 184 ~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 184 DDIGKTISEILPGD 197 (423)
T ss_dssp TTHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999988543
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.88 E-value=4.7e-22 Score=158.83 Aligned_cols=160 Identities=19% Similarity=0.135 Sum_probs=115.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc---------cccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDG 81 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~ 81 (221)
...++|+++|++|||||||+++++..... .....+.+.......+...+..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE--IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE--EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 45689999999999999999997665432 111222232222223322356899999999754321 1112
Q ss_pred cccCccEEEEEEeCCChh--hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCC
Q 027593 82 YYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (221)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (221)
+...+|++++|+|+++.. ++.....|+..+.....+.|+++|+||+|+.......+....+...+++++++||++|.|
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g 322 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG 322 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence 345689999999998876 566677788877766558999999999999764333334455556788999999999999
Q ss_pred hHHHHHHHHHHHh
Q 027593 160 FEKPFLYLARKLA 172 (221)
Q Consensus 160 i~~~~~~l~~~l~ 172 (221)
+++++.+|.+.+.
T Consensus 323 i~~l~~~i~~~l~ 335 (357)
T 2e87_A 323 IDLVKEEIIKTLR 335 (357)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=5.3e-23 Score=153.46 Aligned_cols=147 Identities=15% Similarity=0.114 Sum_probs=100.5
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC-
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH- 85 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~- 85 (221)
.....+.++|+|+|++|+|||||+++|+.+.+......... +.........+.+|||||++.+...+..++..
T Consensus 6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEP------LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSC------EEETTGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCc------eEEEEeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 33456789999999999999999999887765432111111 11112245689999999999988888888776
Q ss_pred ---ccEEEEEEeCC-ChhhhccHHHHHHHHHhh-----cCCCCEEEEEeCCCCCcccccH--------HHHHHHHhcCce
Q 027593 86 ---GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKA--------KQVTFHRKKNLQ 148 (221)
Q Consensus 86 ---~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~p~i~v~nk~D~~~~~~~~--------~~~~~~~~~~~~ 148 (221)
++++++|+|++ +..+|.....|+..+... ..+.|+++|+||+|+....... +...++...++.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888998888887777553 2589999999999997643211 123445555678
Q ss_pred EEEeecCCCCC
Q 027593 149 YYEISAKSNYN 159 (221)
Q Consensus 149 ~~~~s~~~~~~ 159 (221)
++++|+++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999998765
No 130
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=1.6e-22 Score=166.40 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=109.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc-ccccc--------ccccc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-KFGGL--------RDGYY 83 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~~--------~~~~~ 83 (221)
.++|+|+|.+|+|||||+|+|+.... .......++|.+.....+...+..+.+|||||.. .+... ...++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCC-CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 48999999999999999999776543 2334455555555443333345679999999987 55432 23457
Q ss_pred cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHH
Q 027593 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 163 (221)
..+|++++|+|+++..++.....| .. ..+.|+++|+||+|+... ...+........+.+++++||++|.|++++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~il-~~----l~~~piivV~NK~DL~~~-~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL 395 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRKIL-ER----IKNKRYLVVINKVDVVEK-INEEEIKNKLGTDRHMVKISALKGEGLEKL 395 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHHHH-HH----HTTSSEEEEEEECSSCCC-CCHHHHHHHHTCSTTEEEEEGGGTCCHHHH
T ss_pred hcccEEEEEecCCCCCCHHHHHHH-HH----hcCCCEEEEEECcccccc-cCHHHHHHHhcCCCcEEEEECCCCCCHHHH
Confidence 899999999999988777554322 22 247899999999999653 222222211123468999999999999999
Q ss_pred HHHHHHHHh
Q 027593 164 FLYLARKLA 172 (221)
Q Consensus 164 ~~~l~~~l~ 172 (221)
+.+|.+.+.
T Consensus 396 ~~~l~~~~~ 404 (482)
T 1xzp_A 396 EESIYRETQ 404 (482)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHh
Confidence 999999765
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=1.3e-22 Score=166.14 Aligned_cols=155 Identities=20% Similarity=0.190 Sum_probs=101.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc--------cccccccccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYY 83 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~ 83 (221)
..++|+++|.+|||||||+|+|++... ..+.+++|+|.+.....+...+..+.+|||||+. .+...+..++
T Consensus 2 ~~~~V~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 2 GKPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 347999999999999999999765443 4567788999888888887777899999999985 3455556678
Q ss_pred cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHH
Q 027593 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK 162 (221)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~ 162 (221)
..+|++++|+|+.+..++... .+...+.. .++|+++|+||+|+...... ..++. ..++ .++++||++|.|+.+
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~-~~~~~l~~--~~~pvilv~NK~D~~~~~~~--~~~~~-~lg~~~~~~iSA~~g~gv~~ 154 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADE-EVAKILYR--TKKPVVLAVNKLDNTEMRAN--IYDFY-SLGFGEPYPISGTHGLGLGD 154 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHH-HHHHHHTT--CCSCEEEEEECCCC-----C--CCSSG-GGSSCCCEECBTTTTBTHHH
T ss_pred HhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCccchhh--HHHHH-HcCCCCeEEEeCcCCCChHH
Confidence 899999999999987665432 22222322 47899999999998653211 11122 3344 789999999999999
Q ss_pred HHHHHHHHHhC
Q 027593 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
+++++...+..
T Consensus 155 L~~~i~~~l~~ 165 (436)
T 2hjg_A 155 LLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHTGGG
T ss_pred HHHHHHHhcCc
Confidence 99999998764
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=6.5e-22 Score=162.10 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc---------ccccccccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYI 84 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~ 84 (221)
.+|+++|.+|||||||+|+|+.+.. .....++|+|.......+...+..+.+|||||.... ...+..++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 4799999999999999999776553 344567787777665555444567899999997642 233455689
Q ss_pred CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHH-HHHHHhcCc-eEEEeecCCCCChHH
Q 027593 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNFEK 162 (221)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~~~~i~~ 162 (221)
.+|++++|+|+++..+..+. .+...+.. .++|+++|+||+|+.... ..+. .++. .+++ .++++||++|.|+.+
T Consensus 81 ~ad~il~V~D~~~~~~~~d~-~i~~~l~~--~~~p~ilv~NK~D~~~~~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~ 155 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDE-SLADFLRK--STVDTILVANKAENLREF-EREVKPELY-SLGFGEPIPVSAEHNINLDT 155 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHH-HHHHHHHH--HTCCEEEEEESCCSHHHH-HHHTHHHHG-GGSSCSCEECBTTTTBSHHH
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHHHHH--cCCCEEEEEeCCCCcccc-HHHHHHHHH-hcCCCCEEEEeccCCCCHHH
Confidence 99999999999876554321 11122222 279999999999985421 1122 2232 4555 789999999999999
Q ss_pred HHHHHHHHHhC
Q 027593 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
+++++.+.+..
T Consensus 156 L~~~i~~~l~~ 166 (439)
T 1mky_A 156 MLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhccc
Confidence 99999998864
No 133
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=5.2e-22 Score=162.68 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=99.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE--EEEecCeEEEEEEEeCCCcccccccc--------cc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLR--------DG 81 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~ 81 (221)
..++|+++|++|+|||||+|+|+..... ......+++.... .+.++ +..+.+|||||...+.... ..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~v~~~~gtT~d~~~~~i~~~--g~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRA-IVTDLPGTTRDVVESQLVVG--GIPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBS-CCSCCTTCCHHHHHHEEEET--TEEEEECC--------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCeeEEEEEEEEEEC--CEEEEEEECCccccchhHHHHHHHHHHhh
Confidence 4689999999999999999997765432 1223344443333 33333 4678999999976554322 33
Q ss_pred cccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 161 (221)
++..+|++++|+|++++.+... ..|...+ ...|+++|+||+|+...........+. ...+++++|+++|.|++
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~ 372 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGID 372 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHH
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHH
Confidence 5788999999999998765543 2333333 357999999999997543222111111 35689999999999999
Q ss_pred HHHHHHHHHHhCC
Q 027593 162 KPFLYLARKLAGD 174 (221)
Q Consensus 162 ~~~~~l~~~l~~~ 174 (221)
+++.+|.+.+...
T Consensus 373 eL~~~i~~~~~~~ 385 (462)
T 3geh_A 373 SLETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987643
No 134
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.86 E-value=3.8e-22 Score=157.68 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCccc----cccccccccc---C
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLRDGYYI---H 85 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~~~~~~~~---~ 85 (221)
.+|+|+|.+|||||||+++++..... ......+|..+....+... ...+.+|||||... +..+...+++ .
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~--i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCc--cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 36899999999999999997655421 1222333333333233222 26899999999643 3334444544 4
Q ss_pred ccEEEEEEeCCC---hhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHHHHHHHHhcC--ceEEEeecCCC
Q 027593 86 GQCAIIMFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSN 157 (221)
Q Consensus 86 ~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~ 157 (221)
++++++|+|+++ ..++..+..|...+.... ..+|+++|+||+|+.... .....+..... .+++++||+++
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHHhhcCCCEEEEECCCC
Confidence 899999999998 788888888888887754 479999999999997532 12223344444 68999999999
Q ss_pred CChHHHHHHHHHHHhCCCC
Q 027593 158 YNFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~~~~ 176 (221)
.|+++++.+|.+.+...+.
T Consensus 315 ~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 315 EGLRELLFEVANQLENTPE 333 (342)
T ss_dssp STTHHHHHHHHHHHTSCCC
T ss_pred cCHHHHHHHHHHHHhhCcc
Confidence 9999999999999876654
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.86 E-value=1.9e-20 Score=151.87 Aligned_cols=163 Identities=17% Similarity=0.118 Sum_probs=113.2
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE-------EEE---------e---cCeEEEEEEEe
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL-------DFF---------T---NCGKIRFYCWD 68 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------~---~~~~~~~~~~D 68 (221)
...++.++|+++|++|+|||||+++|+....... ......+.... ... . ......+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 3567789999999999999999999765332210 00001000000 000 0 11237899999
Q ss_pred CCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH----HHHHh
Q 027593 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRK 144 (221)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~----~~~~~ 144 (221)
|||++.+...+..++..+|++++|+|+++..++.....++..+... ...|+++++||+|+.+.....+.. ++...
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999888888899999999999999887666666666544433 346999999999997643222211 12211
Q ss_pred ---cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 145 ---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 145 ---~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
.+++++++||++|.|+++++..|.+.+.
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 2578999999999999999999998664
No 136
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.86 E-value=1.9e-21 Score=148.92 Aligned_cols=163 Identities=10% Similarity=0.076 Sum_probs=103.7
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCC-CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccc------
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG------ 81 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~------ 81 (221)
...+.++|+|+|++|||||||+++|++... .....++ +++.......+...+..+.+|||||...+......
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 345679999999999999999999887653 2222222 13333333333334578999999998765433222
Q ss_pred -----cccCccEEEEEEeCCChhhhccHHH-HHHHHHhhc---CCCCEEEEEe-CCCCCcccccH-------H-HHHHHH
Q 027593 82 -----YYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVC---ENIPIVLCGN-KVDVKNRQVKA-------K-QVTFHR 143 (221)
Q Consensus 82 -----~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~---~~~p~i~v~n-k~D~~~~~~~~-------~-~~~~~~ 143 (221)
+++.+|++++|+|++. +..... +...+.... ...|.++++| |+|+....... + ......
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHH
Confidence 5678999999999985 332222 222333322 1457776676 99997532211 1 112333
Q ss_pred hcCce---E--EEeecCCCCChHHHHHHHHHHHhCCC
Q 027593 144 KKNLQ---Y--YEISAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 144 ~~~~~---~--~~~s~~~~~~i~~~~~~l~~~l~~~~ 175 (221)
..+.. + +++||+++.|++++|..|...+..++
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 33322 2 78999999999999999999988766
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=5.1e-22 Score=162.57 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=107.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc----------cccccc-
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRD- 80 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~- 80 (221)
..++|+++|.+|||||||+|+++..... ...+..|++.......+...+..+.+|||||+.. |...+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE-EEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCce-eecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 4699999999999999999998765442 2334455565554433333345699999999843 222222
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc-cHH-HH-----HHHHhcCceEEEee
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAK-QV-----TFHRKKNLQYYEIS 153 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~~~-~~-----~~~~~~~~~~~~~s 153 (221)
.++..+|++++|+|+++..++.+. .|...+.. .+.|+++|+||+|+..... ..+ .. .+....+++++++|
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S 329 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMS 329 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEe
Confidence 367889999999999998887765 35554443 4799999999999975322 221 11 12223467999999
Q ss_pred cCCCCChHHHHHHHHHHHhC
Q 027593 154 AKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 154 ~~~~~~i~~~~~~l~~~l~~ 173 (221)
|++|.|++++|..+.+.+..
T Consensus 330 A~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 330 ALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TTTCTTGGGHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHH
Confidence 99999999999999887763
No 138
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=144.32 Aligned_cols=166 Identities=10% Similarity=0.022 Sum_probs=103.0
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc-----------c
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-----------F 75 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~ 75 (221)
+....+.++|+|+|++|||||||+|+|++..+.....+..+++.......+...+..+.+|||||... +
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence 34456689999999999999999999887766544444335555554444444456899999999442 2
Q ss_pred cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccc-c-------HHHHHHHHh
Q 027593 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-K-------AKQVTFHRK 144 (221)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~-~-------~~~~~~~~~ 144 (221)
......++..++++++|+|++.... ....|+..+.... ...|+++|+||+|+..... . .....+...
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 3333344567899999999874322 1223333333221 2469999999999854321 1 123456667
Q ss_pred cCceEEEeecCCC-----CChHHHHHHHHHHHhCC
Q 027593 145 KNLQYYEISAKSN-----YNFEKPFLYLARKLAGD 174 (221)
Q Consensus 145 ~~~~~~~~s~~~~-----~~i~~~~~~l~~~l~~~ 174 (221)
++..++.++...+ .++.+++..+.+.+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 7777777766643 68899999998877654
No 139
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.85 E-value=4.3e-21 Score=161.40 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=110.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCC--CCC-----------cccCCceeEeeeEEEEe-----cCeEEEEEEEeCCCcc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEK-----------KYEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE 73 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~ 73 (221)
+..+|+|+|+.++|||||+++|+... ... ......|.|.......+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35789999999999999999987521 110 01123456665554444 3456899999999999
Q ss_pred cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEE
Q 027593 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~ 150 (221)
.|...+..++..+|++++|+|+++...+.....|...... +.|+++++||+|+..........++....+. .++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi 159 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---DLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAV 159 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCE
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEE
Confidence 9988888889999999999999998887777777665533 7899999999999764422222344444455 489
Q ss_pred EeecCCCCChHHHHHHHHHHHh
Q 027593 151 EISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 151 ~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
++||++|.|+++++.+|.+.+.
T Consensus 160 ~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 160 RCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp EECTTTCTTHHHHHHHHHHHSC
T ss_pred EeecccCCCchhHHHHHhhcCC
Confidence 9999999999999999998764
No 140
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=6.7e-21 Score=144.71 Aligned_cols=164 Identities=10% Similarity=-0.008 Sum_probs=104.3
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc--------ccccc
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLR 79 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~ 79 (221)
....+.++|+|+|.+|||||||+|++++...........++|.......+...+..+.+|||||... +....
T Consensus 16 ~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 16 FQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp ----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred ccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 3456789999999999999999999887665443334445666555555555567899999999632 22222
Q ss_pred ccc----ccCccEEEEEEeCCChhhhccH-HHHHHHHHhhc----CCCCEEEEEeCCCCCccccc--------HHHHHHH
Q 027593 80 DGY----YIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVK--------AKQVTFH 142 (221)
Q Consensus 80 ~~~----~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~----~~~p~i~v~nk~D~~~~~~~--------~~~~~~~ 142 (221)
..+ ...++++++|+|++. +... ..+...+.... .+.|+++++||.|+...... .....+.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGR---FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTB---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCC---CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 222 288999999999974 2222 22333333322 26899999999999753221 1234555
Q ss_pred HhcCceEEEeecCC-----CCChHHHHHHHHHHHhCC
Q 027593 143 RKKNLQYYEISAKS-----NYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 143 ~~~~~~~~~~s~~~-----~~~i~~~~~~l~~~l~~~ 174 (221)
..++..++.+++.. +.|+.+++..|.+.+..+
T Consensus 173 ~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 173 AECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 66677666666554 579999999999988753
No 141
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.85 E-value=3.5e-21 Score=152.68 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=92.1
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCC----------hhhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027593 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (221)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~ 127 (221)
.++.+.+|||+|++.++..|..++.+++++|+|+|+++ ..++.+...|+..+... ..+.|+++++||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 46899999999999999999999999999999999999 45677777777776553 3679999999999
Q ss_pred CCCccc----------------ccH-HHHHHHH-----------hcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 128 DVKNRQ----------------VKA-KQVTFHR-----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 128 D~~~~~----------------~~~-~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
|+.... ... +...++. ..++.++++||+++.|++++|.++.+.+.+
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 984321 222 2334443 356789999999999999999999998864
No 142
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=3.6e-21 Score=158.40 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=107.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC----------cccccccc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR 79 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 79 (221)
....++|+++|.+|+|||||+++|+.... .......+++.......+...+..+.+||||| ++.+...+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 34579999999999999999999775432 23344556665554333333345899999999 45554443
Q ss_pred c-ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHH-HHHHHHhc-----CceEEE
Q 027593 80 D-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKK-----NLQYYE 151 (221)
Q Consensus 80 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~-----~~~~~~ 151 (221)
. .++..+|++++|+|+++..... ...|...+.. .+.|+++|+||+|+... ....+ ..+.+... ++++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 3 3678899999999998753322 2234444433 47999999999999753 22222 22333322 579999
Q ss_pred eecCCCCChHHHHHHHHHHHhC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
+||++|.|++++|..+.+.+..
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987743
No 143
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.84 E-value=7.8e-21 Score=158.11 Aligned_cols=117 Identities=17% Similarity=0.136 Sum_probs=87.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCC------------------CCCc--ccCCceeEeeeEEEEecCeEEEEEEEeCCC
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGE------------------FEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (221)
+..+|+|+|++|+|||||+++|+... .... .....|++.......+...+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 46799999999999999999976110 0000 011244555555556665678999999999
Q ss_pred cccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
+..+...+..+++.+|++++|+|+++.........|..... .+.|+++|+||+|+..
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT---TTCCEEEEEECTTSCC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCEEEEEeCCCCcc
Confidence 99999888889999999999999998777666655543322 2789999999999864
No 144
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.84 E-value=1.3e-20 Score=158.16 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=112.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC--CCCC-----c------ccCCceeEeeeEEEEe-----cCeEEEEEEEeCCCcc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEK-----K------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE 73 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~--~~~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~ 73 (221)
+..+|+++|+.++|||||+++|+.. .... . .....|.|.......+ ++..+.+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3579999999999999999998752 1111 0 0112344444332222 3446899999999999
Q ss_pred cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEE
Q 027593 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~ 150 (221)
.|...+..++..+|++++|+|+++...+.....|..... .+.|+++++||+|+..........++....++ .++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi 161 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI 161 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence 998888888999999999999999887777777765543 37899999999999764422222334444454 489
Q ss_pred EeecCCCCChHHHHHHHHHHHh
Q 027593 151 EISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 151 ~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
++||++|.|+++++++|.+.+.
T Consensus 162 ~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 162 LASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEeecCCCchHHHHHHHHhcc
Confidence 9999999999999999998764
No 145
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.84 E-value=8.5e-22 Score=163.42 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=109.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.++|+++|++|+|||||+++|....+.....++.+.+......... .+..+.+|||||++.|...+..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 35789999999999999999988665543332222222222222221 23478999999999999999999999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc---HHHHHH---HHh--cCceEEEeecCCCCChHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTF---HRK--KNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~---~~~~~~---~~~--~~~~~~~~s~~~~~~i~~~ 163 (221)
|+|+++.........|... . ..+.|+++++||+|+...... ...... ... ..++++++||++|.|++++
T Consensus 82 VVDa~dg~~~qt~e~l~~~-~--~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 82 VVAADDGVMKQTVESIQHA-K--DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp ECBSSSCCCHHHHHHHHHH-H--TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EEECCCCccHHHHHHHHHH-H--HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 9999986555443333222 1 137899999999998653211 111111 111 1358999999999999999
Q ss_pred HHHHHHHHh
Q 027593 164 FLYLARKLA 172 (221)
Q Consensus 164 ~~~l~~~l~ 172 (221)
+.+|...+.
T Consensus 159 le~I~~l~~ 167 (537)
T 3izy_P 159 AEATIALAE 167 (537)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 999998654
No 146
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.84 E-value=1e-20 Score=156.59 Aligned_cols=153 Identities=20% Similarity=0.172 Sum_probs=102.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCC--C---------------------------CcccCCceeEeeeEEEEecCe
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (221)
.++.+||+++|++|+|||||+++|+.... . .......|++.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 35679999999999999999999865411 0 011123466666666666677
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhcc-----HHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cc
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-----VPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV 134 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~ 134 (221)
+..+.+|||||++.|...+..++..+|++++|+|+++..++.. ...+...+.......|+++|+||+|+.+. ..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence 7899999999999998888889999999999999998754322 12222222222344679999999998752 11
Q ss_pred cHH-----HHHHHHhc-----CceEEEeecCCCCChHH
Q 027593 135 KAK-----QVTFHRKK-----NLQYYEISAKSNYNFEK 162 (221)
Q Consensus 135 ~~~-----~~~~~~~~-----~~~~~~~s~~~~~~i~~ 162 (221)
..+ ...+.... .++++++||++|.|+.+
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 111 11222222 46899999999999975
No 147
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.84 E-value=3e-20 Score=145.34 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=90.4
Q ss_pred cCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCC----------ChhhhccHHHHHHHHHhh--cCCCCEEEEEe
Q 027593 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125 (221)
Q Consensus 58 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~i~v~n 125 (221)
...++.+++||++|++.++..|..++++++++++|+|++ +..++.+...|...+... ..+.|+++++|
T Consensus 163 ~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~N 242 (327)
T 3ohm_A 163 DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 242 (327)
T ss_dssp EETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred EeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEE
Confidence 335689999999999999999999999999999999665 555666666666655443 25799999999
Q ss_pred CCCCCccc-----------------ccH-HHHHH----------HHhcCceEEEeecCCCCChHHHHHHHHHHHhCC
Q 027593 126 KVDVKNRQ-----------------VKA-KQVTF----------HRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 126 k~D~~~~~-----------------~~~-~~~~~----------~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~ 174 (221)
|+|+.... ... +...+ ....++.++++||+++.+++.+|..+...+.++
T Consensus 243 K~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 243 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp CHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 99985422 122 22333 234567889999999999999999999988764
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.83 E-value=3.1e-20 Score=153.37 Aligned_cols=162 Identities=19% Similarity=0.115 Sum_probs=108.0
Q ss_pred CCCCccCCceEEEEEcCCCCcHHHHHHHHhcCC----CC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc
Q 027593 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGE----FE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (221)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 79 (221)
.++...|+.++|+++|+.++|||||+++|+... .. .......|+|.......+...+..+.+|||||++.+...+
T Consensus 11 ~~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~ 90 (482)
T 1wb1_A 11 GRPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAV 90 (482)
T ss_dssp --CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHH
T ss_pred cchhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHH
Confidence 356677889999999999999999999977554 11 0111223333332211222234789999999999888877
Q ss_pred cccccCccEEEEEEeCCCh---hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH----HHHHHHHhc----Cce
Q 027593 80 DGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRKK----NLQ 148 (221)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~----~~~~~~~~~----~~~ 148 (221)
...+..+|++++|+|+++. .+++.+ ..+.. .+.|.++++||+|+.+..... +...+.... ..+
T Consensus 91 ~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 164 (482)
T 1wb1_A 91 VSAADIIDLALIVVDAKEGPKTQTGEHM----LILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS 164 (482)
T ss_dssp HHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred HHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce
Confidence 8889999999999999874 232222 22222 268889999999997532111 122333333 578
Q ss_pred EEEeecCCCCChHHHHHHHHHHHh
Q 027593 149 YYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 149 ~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
++++||++|.|+++++..|.+.+.
T Consensus 165 ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 165 IIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999999999764
No 149
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=3.5e-20 Score=151.80 Aligned_cols=158 Identities=19% Similarity=0.176 Sum_probs=101.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc------------
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------------ 79 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------------ 79 (221)
..++|+|+|++|||||||+|++++... ....+..|++.......+...+..+.+|||+|........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc-cccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 458999999999999999999665433 3344556666655443333233478899999975432221
Q ss_pred cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHHHH------HHHHhcCceEEEe
Q 027593 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQV------TFHRKKNLQYYEI 152 (221)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~~~------~~~~~~~~~~~~~ 152 (221)
..++..++++++++|+++..+.... .+...+.. .+.|+++|+||+|+.... ...+.. .+....+.+++++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence 2246678999999999887665432 22222222 379999999999986532 222211 1222335789999
Q ss_pred ecCCCCChHHHHHHHHHHHhC
Q 027593 153 SAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 153 s~~~~~~i~~~~~~l~~~l~~ 173 (221)
||++|.|++++|..+.+.+..
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 150
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=5.9e-21 Score=157.09 Aligned_cols=158 Identities=18% Similarity=0.143 Sum_probs=102.6
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC--------ccccccccc
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG--------QEKFGGLRD 80 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~ 80 (221)
..|...+|+|+|.+|||||||+|+|++... .....++|++.......+...+..+.+||||| +..+.....
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEE-C-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 457788999999999999999999765543 35567889999988888888888999999999 555666667
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcC-ceEEEeecCCCCC
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYN 159 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ 159 (221)
.++..+|++++|+|+.+... ....|+..+... .++|+++|+||+|+..... ...++. ..+ ...+.+||.+|.|
T Consensus 98 ~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~~--~~~e~~-~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVT--AADEEVAKILYR-TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT-CCSCEEEEEECC-----------CCSG-GGSSSSEEECCTTTCTT
T ss_pred hhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH-cCCCEEEEEECccchhhhh--hHHHHH-HcCCCceEEeecccccc
Confidence 77889999999999876433 223333332222 4799999999999864321 111111 222 2567999999999
Q ss_pred hHHHHHHHHHHHhC
Q 027593 160 FEKPFLYLARKLAG 173 (221)
Q Consensus 160 i~~~~~~l~~~l~~ 173 (221)
+.+++..+...+..
T Consensus 172 v~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 172 LGDLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHHHTTGGG
T ss_pred hHHHHHHHHhhccc
Confidence 99999999887643
No 151
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.83 E-value=1.6e-19 Score=147.59 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=107.1
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCC--CC---------------------------cccCCceeEeeeEEEEec
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK---------------------------KYEPTIGVEVHPLDFFTN 58 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~ 58 (221)
....+.++|+++|++++|||||+++|+.... .. ......|++.......+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 3456789999999999999999999754211 00 111234666666666666
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhh---hccHHHHHHHHHhh-cCCCC-EEEEEeCCCCCccc
Q 027593 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YKNVPTWHRDLCRV-CENIP-IVLCGNKVDVKNRQ 133 (221)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~-~~~~p-~i~v~nk~D~~~~~ 133 (221)
..+..+.+|||||++.|...+..++..+|++++|+|+++... |.....+...+... ..+.| +++++||+|+....
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence 667899999999999998888888999999999999998642 22111222221111 12566 89999999985421
Q ss_pred cc--------HHHHHHHHhc------CceEEEeecCCCCChHHHHH
Q 027593 134 VK--------AKQVTFHRKK------NLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 134 ~~--------~~~~~~~~~~------~~~~~~~s~~~~~~i~~~~~ 165 (221)
.. .+...+.... .++++++||++|.|+.+++.
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11 1111233232 35799999999999998654
No 152
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.2e-20 Score=137.99 Aligned_cols=118 Identities=16% Similarity=0.142 Sum_probs=87.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC----
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH---- 85 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~---- 85 (221)
..+.++|+|+|++|||||||+++|+.+.+....... . .+...+.....+.+|||||+..+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~-----~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 118 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-----E-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 118 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccC-----C-CceeeeecCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence 456799999999999999999998877653311100 0 011112245678999999999888877777765
Q ss_pred ccEEEEEEeCC-ChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCccc
Q 027593 86 GQCAIIMFDVT-ARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQ 133 (221)
Q Consensus 86 ~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~~ 133 (221)
++++++|+|++ +..++..+..|+..+.... .+.|+++|+||+|+....
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 8999988888877665432 479999999999997643
No 153
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=3.1e-19 Score=144.90 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=99.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCC---CCCcccC--CceeEeeeEEEEe-------------c--C----eEEEEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFY 65 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 65 (221)
..+.++|+++|+.++|||||+++|++.. +.....+ |....+....... . + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999976322 1111112 2222222222211 1 1 137899
Q ss_pred EEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc---cHH-HHHH
Q 027593 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAK-QVTF 141 (221)
Q Consensus 66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~---~~~-~~~~ 141 (221)
+|||||++.|...+...+..+|++++|+|+++..........+..+ ......|+++++||+|+..... ..+ ..++
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~ 163 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EILGIDKIIIVQNKIDLVDEKQAEENYEQIKEF 163 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 9999999988776666778889999999999643111111122211 2223468999999999975332 112 2233
Q ss_pred HHh---cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 142 HRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 142 ~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
... .+.+++++||++|.|+++++..|...+.
T Consensus 164 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 164 VKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 332 3678999999999999999999998654
No 154
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.82 E-value=3.9e-20 Score=146.66 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=88.5
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCC----------ChhhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027593 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (221)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~ 127 (221)
..+.+++|||+|++.++..+..++++++++++|+|++ +..+|.+...|...+... .++.|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 778888888888777653 3689999999999
Q ss_pred CCCcccc-----------------------cHHHHHHHHh----------------cCceEEEeecCCCCChHHHHHHHH
Q 027593 128 DVKNRQV-----------------------KAKQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 128 D~~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
|+..... ..+...++.. ..+.++++||+++.|++++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843211 1122233221 234578999999999999999999
Q ss_pred HHHhC
Q 027593 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
No 155
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.82 E-value=3.1e-21 Score=157.81 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=101.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcC--CCCCcc---------------------------cCCceeEeeeEEEEecCe
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------EPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 60 (221)
.++.++|+++|+.|+|||||+++|+.. .+.... ....|+|.......+...
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 456799999999999999999998753 221110 012344555444455566
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHh------hcCCCCEEEEEeCCCCCcccc
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR------VCENIPIVLCGNKVDVKNRQV 134 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~------~~~~~p~i~v~nk~D~~~~~~ 134 (221)
+..+.+|||||+..|...+..++..+|++++|+|+++ .+|++...|...... .....|+++++||+|+.+...
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 7889999999999998888888999999999999998 666644332222111 112346899999999976211
Q ss_pred --------cHHHHHHHHhcC-----ceEEEeecCCCCChHHHH
Q 027593 135 --------KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 135 --------~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~ 164 (221)
..+...+....+ ++++++||++|.|+.+++
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 112223444444 789999999999997654
No 156
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.4e-20 Score=156.19 Aligned_cols=154 Identities=19% Similarity=0.170 Sum_probs=104.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------------------------cCCceeEeeeEEEEecCe
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------------------------EPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 60 (221)
..+.++|+++|++|+|||||+++|+.....-.. ....|+|.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 456899999999999999999998754221100 002455666555556666
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh---hhccHHHHHHH--HHhhcCCCCEEEEEeCCCCCcc-cc
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRD--LCRVCENIPIVLCGNKVDVKNR-QV 134 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~--~~~~~~~~p~i~v~nk~D~~~~-~~ 134 (221)
+..+.+|||||++.+...+..++..+|++++|+|+++.. +|.....+... +.......|+++|+||+|+... ..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 789999999999999888888899999999999999752 22111222222 2222234569999999999752 11
Q ss_pred cH-----HHHHHHHhc-----CceEEEeecCCCCChHHH
Q 027593 135 KA-----KQVTFHRKK-----NLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 135 ~~-----~~~~~~~~~-----~~~~~~~s~~~~~~i~~~ 163 (221)
.. +...+.... .++++++||++|.|+.++
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 11 111222222 468999999999999865
No 157
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.81 E-value=1.3e-19 Score=144.48 Aligned_cols=158 Identities=18% Similarity=0.093 Sum_probs=102.1
Q ss_pred ceE-EEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE--EEEecCeEEEEEEEeCCCccc---------cccccc
Q 027593 13 SFK-LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEK---------FGGLRD 80 (221)
Q Consensus 13 ~~~-i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~---------~~~~~~ 80 (221)
.++ |+++|++|||||||+|++++... ......+.|.... .+.+.+ ..+.+|||+|... +... .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~--~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l 252 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ--KVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-L 252 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-H
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc--cccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-H
Confidence 355 99999999999999999776543 2223334444333 344444 6789999999632 1111 2
Q ss_pred ccccCccEEEEEEeCCChh--hhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccH---HHHHHHHhc---CceEEE
Q 027593 81 GYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYE 151 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~---~~~~~~~~~---~~~~~~ 151 (221)
..+..+|++++|+|+++.. ....+..|...+.... .+.|+++|+||+|+....... ....+.... ...+++
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 2367899999999999876 5555555555554432 578999999999986533111 111122333 346899
Q ss_pred eecCCCCChHHHHHHHHHHHhCCC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~ 175 (221)
+|++++.|+++++..|.+.+...+
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EECCCCcCHHHHHHHHHHHhcccC
Confidence 999999999999999998775533
No 158
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.81 E-value=8.8e-20 Score=145.14 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=84.4
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCC----------hhhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027593 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (221)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~ 127 (221)
.++.+.+|||+|++.++..|..++.+++++|+|+|+++ ..++.+...|...+... ..+.|+++++||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 45889999999999999999999999999999999999 67888888888777653 3689999999999
Q ss_pred CCCccc-----------------ccHH-HHHHH--------H---hcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 128 DVKNRQ-----------------VKAK-QVTFH--------R---KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 128 D~~~~~-----------------~~~~-~~~~~--------~---~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
|+.... ...+ ...++ . ..++.++++||+++.|++++|.++...+.+
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 985311 2222 22322 1 346789999999999999999999988754
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.81 E-value=7.7e-20 Score=147.94 Aligned_cols=158 Identities=13% Similarity=0.035 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------cccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 77 (221)
+.++|+++|+.++|||||+++|+... +.. ......|.|.......+......+.+|||||+..|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 57899999999999999999987531 110 0112345566555555555668899999999998877
Q ss_pred cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCccccc-----HHHHHHHHhcC-----
Q 027593 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKKN----- 146 (221)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~-----~~~~~~~~~~~----- 146 (221)
.+..++..+|++++|+|+++.........| ..+.. .+.| +++++||+|+...... .+..++....+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 777888999999999999986443333233 22222 2677 6899999999742111 12223444444
Q ss_pred ceEEEeecCCCCC----------hHHHHHHHHHHHh
Q 027593 147 LQYYEISAKSNYN----------FEKPFLYLARKLA 172 (221)
Q Consensus 147 ~~~~~~s~~~~~~----------i~~~~~~l~~~l~ 172 (221)
++++++||++|.+ +.++++.|.+.+.
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 6899999998664 7888888887654
No 160
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.81 E-value=1.1e-18 Score=141.86 Aligned_cols=162 Identities=15% Similarity=0.090 Sum_probs=105.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCC---CCCcccC--CceeEeeeEEEEe-------------c--C----eEEEEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFY 65 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 65 (221)
..+.++|+++|+.++|||||+++|++.. +.....+ |....+....... . + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999976322 1222222 3322222222211 0 1 137899
Q ss_pred EEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc---HH-HHHH
Q 027593 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AK-QVTF 141 (221)
Q Consensus 66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~---~~-~~~~ 141 (221)
+|||||+..|...+...+..+|++++|+|+++..........+..+. .....|+++++||+|+...... .+ ...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 165 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ-IIGQKNIIIAQNKIELVDKEKALENYRQIKEF 165 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH-HHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHH-HcCCCcEEEEEECccCCCHHHHHHHHHHHHHH
Confidence 99999999887766666788899999999996431111111111111 2234689999999999764321 11 1223
Q ss_pred HHh---cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 142 HRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 142 ~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
... ...+++++||++|.|+++++..|...+.
T Consensus 166 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 166 IEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 322 3678999999999999999999998654
No 161
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.81 E-value=3.9e-19 Score=149.64 Aligned_cols=156 Identities=21% Similarity=0.202 Sum_probs=105.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccCCceeEeeeEEE------------EecCeEEEEEEEeCCCccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDF------------FTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~~~D~~g~~~ 74 (221)
++.++|+++|++|+|||||+++|+....... ...+.+.++..... .++.....+.+|||||+..
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4568999999999999999999876443221 12233322221100 0001123599999999999
Q ss_pred ccccccccccCccEEEEEEeCCC---hhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc--------------H-
Q 027593 75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--------------A- 136 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~--------------~- 136 (221)
|...+..++..+|++++|+|+++ +.++..+.. +.. .+.|+++++||+|+...... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 99999888999999999999998 445443322 111 37899999999998642100 0
Q ss_pred ----------HHHHHHHh---------------cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 137 ----------KQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 137 ----------~~~~~~~~---------------~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
+....... ..++++++||++|.|+++++.+|...+.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 00011111 1248999999999999999999998664
No 162
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.80 E-value=7.3e-20 Score=141.12 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=87.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCC-Ccc-------cCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc-----
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKY-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----- 77 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----- 77 (221)
...++|+|+|.+|+|||||+|+++..... ..+ .++.+.+.....+..++..+.+.+|||||......
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 34799999999999999999996544332 222 34444444444444455557999999999732211
Q ss_pred --cc-------cccc-------------cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc
Q 027593 78 --LR-------DGYY-------------IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (221)
Q Consensus 78 --~~-------~~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~ 135 (221)
.. ..++ ..+|+++++++.+.......-..++..+.. ..|+++|+||+|+......
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~ 162 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence 11 1111 136788888876653222222234444433 7999999999998643222
Q ss_pred H----HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593 136 A----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 136 ~----~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l 171 (221)
. ...+.....+++++.+|+.++.|+.+++.+|...+
T Consensus 163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 1 12234456688999999999999999998888754
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.80 E-value=1.8e-19 Score=144.11 Aligned_cols=143 Identities=7% Similarity=-0.036 Sum_probs=104.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (221)
+|+++|++++|||||+++|+ ..|.|.......+...+..+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999965 33445444455555566789999999999887777777899999999999
Q ss_pred CCChhhhccHHHHHHHHHhhcCCCCE-EEEEe-CCCCCcccccH----HHHHHHHhc---CceEEE--eecCC---CCCh
Q 027593 95 VTARLTYKNVPTWHRDLCRVCENIPI-VLCGN-KVDVKNRQVKA----KQVTFHRKK---NLQYYE--ISAKS---NYNF 160 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~p~-i~v~n-k~D~~~~~~~~----~~~~~~~~~---~~~~~~--~s~~~---~~~i 160 (221)
+ ...+.....+....... +.|. ++++| |+|+ +..... +..++.... .+++++ +||++ +.|+
T Consensus 93 -~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 93 -P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp -T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred -C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence 4 33344444444443332 6777 88999 9999 432211 112233322 368999 99999 9999
Q ss_pred HHHHHHHHHHHh
Q 027593 161 EKPFLYLARKLA 172 (221)
Q Consensus 161 ~~~~~~l~~~l~ 172 (221)
++++..|...+.
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999988754
No 164
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.80 E-value=5.6e-20 Score=144.30 Aligned_cols=118 Identities=13% Similarity=0.154 Sum_probs=91.3
Q ss_pred EecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCC----------ChhhhccHHHHHHHHHhh--cCCCCEEEE
Q 027593 56 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLC 123 (221)
Q Consensus 56 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~i~v 123 (221)
.+...++.+++||++|++.++..|..++++++++++|+|++ +..++.+...|...+... ..+.|++++
T Consensus 155 ~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv 234 (340)
T 4fid_A 155 DFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIF 234 (340)
T ss_dssp EEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEE
T ss_pred EEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEE
Confidence 34446689999999999999999999999999999999998 677777777777766543 368999999
Q ss_pred EeCCCCCcccc-----------------cHHHHHHHH----------------h-----------cCceEEEeecCCCCC
Q 027593 124 GNKVDVKNRQV-----------------KAKQVTFHR----------------K-----------KNLQYYEISAKSNYN 159 (221)
Q Consensus 124 ~nk~D~~~~~~-----------------~~~~~~~~~----------------~-----------~~~~~~~~s~~~~~~ 159 (221)
+||+|+..... ..+...+.. . ..+.++++||+++.+
T Consensus 235 ~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~n 314 (340)
T 4fid_A 235 LNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSN 314 (340)
T ss_dssp EECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHH
T ss_pred EECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHH
Confidence 99999853211 111211111 1 247889999999999
Q ss_pred hHHHHHHHHHHHhC
Q 027593 160 FEKPFLYLARKLAG 173 (221)
Q Consensus 160 i~~~~~~l~~~l~~ 173 (221)
++.+|..+...+.+
T Consensus 315 v~~vF~~v~~~Il~ 328 (340)
T 4fid_A 315 IKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.80 E-value=9.2e-20 Score=147.91 Aligned_cols=160 Identities=14% Similarity=0.064 Sum_probs=111.0
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcC--------CCCCc-------ccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG--------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (221)
..++.++|+++|++|+|||||+++|+.. .+... .....|.+.......+......+.+|||||+.
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3567899999999999999999998762 11110 01234566666566666667889999999999
Q ss_pred cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCccccc-----HHHHHHHHhcC-
Q 027593 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKKN- 146 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~-----~~~~~~~~~~~- 146 (221)
.|...+..++..+|++++|+|+++..... ...++..+.. .+.| +++++||+|+...... .+...+....+
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 98877788889999999999998864332 3344443333 2677 8899999999742111 12223444433
Q ss_pred ----ceEEEeecCCCCC------------------hHHHHHHHHHHH
Q 027593 147 ----LQYYEISAKSNYN------------------FEKPFLYLARKL 171 (221)
Q Consensus 147 ----~~~~~~s~~~~~~------------------i~~~~~~l~~~l 171 (221)
.+++++||++|.| +.++++.|...+
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 6899999999876 667777666644
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.80 E-value=2.3e-20 Score=153.70 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=105.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (221)
+.++|+++|+.++|||||+++|+.+.+.... ..|+|.+.....+...+..+.+|||||++.|...+...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 5689999999999999999998765443222 12333332222333344578999999999999998888999999999
Q ss_pred EEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc---cHHHH---HHHHhc--CceEEEeecCCCCChHHH
Q 027593 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQV---TFHRKK--NLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~---~~~~~---~~~~~~--~~~~~~~s~~~~~~i~~~ 163 (221)
|+|+++.........|. .... .+.|+++++||+|+..... ..... .+.... .++++++||++|.|++++
T Consensus 81 VVda~~g~~~qT~e~l~-~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAIQ-HAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp EEETTTBSCTTTHHHHH-HHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred EeecccCccHHHHHHHH-HHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence 99998864433333332 2221 3789999999999964211 11100 011122 368999999999999999
Q ss_pred HHHHHH
Q 027593 164 FLYLAR 169 (221)
Q Consensus 164 ~~~l~~ 169 (221)
+.+|..
T Consensus 158 le~I~~ 163 (501)
T 1zo1_I 158 LDAILL 163 (501)
T ss_dssp HHHTTT
T ss_pred hhhhhh
Confidence 988764
No 167
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.80 E-value=7.1e-20 Score=146.16 Aligned_cols=162 Identities=17% Similarity=0.266 Sum_probs=85.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCC-CCccc--------CCceeEeeeEEEEecCeEEEEEEEeCCCc-------cc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYE--------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~ 74 (221)
...++|+|+|++|+|||||+++++.... ...+. ++.+...........+....+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 3468999999999999999999554322 22111 23333333333333455678999999998 55
Q ss_pred cccccc-------ccccCccE-----------EEEEEeCCC-hhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcccc
Q 027593 75 FGGLRD-------GYYIHGQC-----------AIIMFDVTA-RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (221)
Q Consensus 75 ~~~~~~-------~~~~~~~~-----------~i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~ 134 (221)
+...+. .++...++ .+++|++++ ..++..+. .|+..+ ..+.|+|+|+||+|+.....
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH
Confidence 555544 44433322 235555544 45666554 333333 35789999999999975322
Q ss_pred cH----HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhCCCC
Q 027593 135 KA----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 135 ~~----~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~ 176 (221)
.. +....+...+++++++|++++.+ ++.|..+.+.+.....
T Consensus 192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 21 23345566788999999999998 8888888888766443
No 168
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=5.4e-19 Score=130.86 Aligned_cols=161 Identities=12% Similarity=0.000 Sum_probs=97.4
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc----------cc
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GG 77 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~ 77 (221)
....+..+|+++|++|||||||++++++..+...+.++.|.+.......+.+ .+.+|||||.... ..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence 3445678999999999999999999665554455566777666544443332 5789999997421 11
Q ss_pred cccccc---cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc----HHHHHHHHhc--Cce
Q 027593 78 LRDGYY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK--NLQ 148 (221)
Q Consensus 78 ~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~----~~~~~~~~~~--~~~ 148 (221)
....++ ..++++++++|+++..++... .....+.. .+.|.++++||+|+...... .....+.... .+.
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 122233 467899999999886554321 11111211 37899999999998653211 1222333333 357
Q ss_pred EEEeecCCCCChHHHHHHHHHHHhCC
Q 027593 149 YYEISAKSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 149 ~~~~s~~~~~~i~~~~~~l~~~l~~~ 174 (221)
++++|++++.++++++..|.+.+...
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 89999999999999999998876443
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.79 E-value=8.3e-20 Score=150.42 Aligned_cols=155 Identities=18% Similarity=0.206 Sum_probs=91.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc--CCCCCc---------------------------ccCCceeEeeeEEEEecCe
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 60 (221)
..+.++|+++|+.++|||||+++|+. +.+... .....|.|.......+...
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 35678999999999999999999764 222100 0012234443332333334
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCh---hhhccHHHHHHHHHhh-cCCCC-EEEEEeCCCCCcccc-
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRV-CENIP-IVLCGNKVDVKNRQV- 134 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~p-~i~v~nk~D~~~~~~- 134 (221)
+..+.+|||||++.|...+...+..+|++++|+|+++. .+|.....|...+... ..+.| +++++||+|+.....
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 67899999999999988888889999999999999987 3555333333333222 23666 999999999954211
Q ss_pred -------cHHHHHHHHhc-------CceEEEeecCCCCChHHHH
Q 027593 135 -------KAKQVTFHRKK-------NLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 135 -------~~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~ 164 (221)
..+...+.... .++++++|+++|.|+.+++
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11222333333 4679999999999998754
No 170
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.79 E-value=8.6e-19 Score=140.53 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=91.1
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCC----------hhhhccHHHHHHHHHhh--cCCCCEEEEEeCCC
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD 128 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D 128 (221)
++.+++|||+|++.++..|..++++++++|+|||+++ ..+|.+...|+..+... .++.|++|++||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 4889999999999999999999999999999999999 88999988898887664 36789999999999
Q ss_pred CCcccc--------------------------------cHHHHHH-----HHh--------cCceEEEeecCCCCChHHH
Q 027593 129 VKNRQV--------------------------------KAKQVTF-----HRK--------KNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 129 ~~~~~~--------------------------------~~~~~~~-----~~~--------~~~~~~~~s~~~~~~i~~~ 163 (221)
+..... ..+...+ ... ..+.++++||+++.|++.+
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 843211 0111222 111 3567889999999999999
Q ss_pred HHHHHHHHhC
Q 027593 164 FLYLARKLAG 173 (221)
Q Consensus 164 ~~~l~~~l~~ 173 (221)
|.++...+.+
T Consensus 376 F~~v~~~I~~ 385 (402)
T 1azs_C 376 FNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 171
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.79 E-value=4.3e-19 Score=145.11 Aligned_cols=151 Identities=19% Similarity=0.180 Sum_probs=101.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCC--CCc----------ccCC-------------------ceeEeeeEEEEecC
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK----------YEPT-------------------IGVEVHPLDFFTNC 59 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~--~~~----------~~~~-------------------~~~~~~~~~~~~~~ 59 (221)
.+.++|+++|+.++|||||+++|+.+.. ... ...+ .|++.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4569999999999999999999875431 000 0011 23333333334445
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-c----
Q 027593 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V---- 134 (221)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~---- 134 (221)
....+.+|||||++.|...+..++..+|++++|+|+++..... ...++..... ....|+++|+||+|+.+.. .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~-~~~~~iIvviNK~Dl~~~~~~~~~~ 179 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL-LGIKHIVVAINKMDLNGFDERVFES 179 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH-TTCCEEEEEEECTTTTTSCHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH-cCCCeEEEEEEcCcCCcccHHHHHH
Confidence 5678999999999998887778899999999999999864322 2233332222 2234689999999997521 1
Q ss_pred -cHHHHHHHHhcC-----ceEEEeecCCCCChHHH
Q 027593 135 -KAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (221)
Q Consensus 135 -~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~ 163 (221)
..+...+....+ .+++++||++|.|+.++
T Consensus 180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 112224445555 78999999999999874
No 172
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=1.3e-18 Score=149.21 Aligned_cols=127 Identities=21% Similarity=0.186 Sum_probs=89.2
Q ss_pred CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhc--CCCCCc--c------------cCCceeEeeeEEEEecCeEEEE
Q 027593 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--Y------------EPTIGVEVHPLDFFTNCGKIRF 64 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~--~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~ 64 (221)
|++.-+ ....+..+|+|+|++|+|||||+++|+. +..... . ....+.+.......+...+..+
T Consensus 1 M~~~l~-~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i 79 (691)
T 1dar_A 1 MAVKVE-YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRI 79 (691)
T ss_dssp CCTTCC-CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEE
T ss_pred CCcccc-CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEE
Confidence 666432 3456679999999999999999999873 211100 0 0022344444444444456889
Q ss_pred EEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 65 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
.+|||||+..+...+..++..+|++++|+|+++...+.....|..... .+.|+++++||+|+..
T Consensus 80 ~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 80 NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp EEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH---TTCCEEEEEECTTSTT
T ss_pred EEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH---cCCCEEEEEECCCccc
Confidence 999999999888888888999999999999999877776666654332 2899999999999864
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.77 E-value=5.5e-19 Score=137.77 Aligned_cols=159 Identities=12% Similarity=0.137 Sum_probs=100.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc----cCCce----------------------eEee------------
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIG----------------------VEVH------------ 51 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~----~~~~~----------------------~~~~------------ 51 (221)
....++|+|+|.+|||||||+|+|++..+.+.. ...++ ++..
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 345689999999999999999998877653211 11122 1110
Q ss_pred -----------eEEEEec-CeEEEEEEEeCCCccc-------------ccccccccccCccEEE-EEEeCCChhhhccHH
Q 027593 52 -----------PLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAI-IMFDVTARLTYKNVP 105 (221)
Q Consensus 52 -----------~~~~~~~-~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~ 105 (221)
...+.+. .....+.+|||||... +......++..++.++ +|+|+++........
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0011111 1136799999999642 2334455677787666 799998765555433
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCcccc-cHHHHHH---HHhcC-ceEEEeecCCCCChHHHHHHHHHH
Q 027593 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTF---HRKKN-LQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 106 ~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~~~~~~~---~~~~~-~~~~~~s~~~~~~i~~~~~~l~~~ 170 (221)
.+...+.. .+.|+++|+||+|+..... ..+..+. ....+ .+++++||++|.|+++++..|.+.
T Consensus 183 ~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 KIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 44444432 3789999999999975332 2222211 01112 468889999999999999998873
No 174
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=1.7e-18 Score=144.29 Aligned_cols=119 Identities=17% Similarity=0.156 Sum_probs=81.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCC-CC-------------------cccCCceeEeeeEEEEecCeEEEEEEEeC
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EK-------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 69 (221)
..+.++|+++|++|+|||||+++|+.... .. ......|++.......+...+..+.+|||
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence 34679999999999999999999875211 00 01123445555445555556789999999
Q ss_pred CCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 70 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
||+..+......++..+|++++|+|+++...... ..+..... ..+.|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~--~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR--LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT--TTTCCEEEEEECTTSCC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH--HcCCCEEEEEcCcCCcc
Confidence 9999988888888999999999999987632211 11111111 13789999999999864
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.77 E-value=3.9e-19 Score=146.13 Aligned_cols=152 Identities=15% Similarity=0.183 Sum_probs=102.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcC--CCCCc---------------------------ccCCceeEeeeEEEEecCe
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 60 (221)
.++.++|+++|++++|||||+++|+.. .+... .....|++.......+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 456799999999999999999998753 11110 0012344544444455556
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh---hhcc---HHHHHHHHHhhcCCCC-EEEEEeCCCCCc-c
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKN---VPTWHRDLCRVCENIP-IVLCGNKVDVKN-R 132 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~p-~i~v~nk~D~~~-~ 132 (221)
...+.+|||||+..|...+..++..+|++++|+|+++.. +|.. ...+...... .+.| +++++||+|+.. .
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~ 161 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWD 161 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCC
Confidence 788999999999998888888899999999999999763 4432 1122211111 2555 899999999973 1
Q ss_pred ccc-----HHHHHHHHhcC-----ceEEEeecCCCCChHHH
Q 027593 133 QVK-----AKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (221)
Q Consensus 133 ~~~-----~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~ 163 (221)
... .+...+....+ ++++++||++|.|+.++
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 111 11223333333 68999999999998753
No 176
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.77 E-value=1.9e-19 Score=151.92 Aligned_cols=151 Identities=21% Similarity=0.205 Sum_probs=80.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCC--C-------------------------C--cccCCceeEeeeEEEEecCe
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--E-------------------------K--KYEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~--~-------------------------~--~~~~~~~~~~~~~~~~~~~~ 60 (221)
..+.++|+++|++++|||||+++|+.... . . ......|+|.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 45678999999999999999999753110 0 0 00113456666666666666
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh---hh--ccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcc-c
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-Q 133 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~-~ 133 (221)
+..+.+|||||+..|...+...+..+|++++|+|+++.. ++ .........+.... +.| +++|+||+|+... .
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SCCCEEEEEECGGGGTTCH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CCCeEEEEEeccccccccH
Confidence 789999999999999888888899999999999998753 22 22122221222222 454 8999999998641 1
Q ss_pred ccH-----HHHHHH-HhcC-----ceEEEeecCCCCChH
Q 027593 134 VKA-----KQVTFH-RKKN-----LQYYEISAKSNYNFE 161 (221)
Q Consensus 134 ~~~-----~~~~~~-~~~~-----~~~~~~s~~~~~~i~ 161 (221)
... +...+. ...+ ++++++||++|.|+.
T Consensus 333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 111 112222 2233 479999999999997
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.77 E-value=1.5e-18 Score=152.87 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=109.0
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------cccCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (221)
..++.++|+++|+.++|||||+++|+... +.. ....+.|+|+......+......+.+|||||++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 35678999999999999999999987531 000 1123556666655555666678999999999999
Q ss_pred ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCccccc-----HHHHHHHHhcC--
Q 027593 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKKN-- 146 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~-----~~~~~~~~~~~-- 146 (221)
|...+..++..+|++++|+|+++..... ...++..+... +.| +++++||+|+...... .+...+....+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 8877778889999999999999875433 33344333332 677 7899999999752211 12223444443
Q ss_pred ---ceEEEeecCCC--------CChHHHHHHHHHHH
Q 027593 147 ---LQYYEISAKSN--------YNFEKPFLYLARKL 171 (221)
Q Consensus 147 ---~~~~~~s~~~~--------~~i~~~~~~l~~~l 171 (221)
++++++|+++| .|+.++++.|...+
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 68999999998 46788888887754
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.76 E-value=4.3e-18 Score=145.59 Aligned_cols=117 Identities=19% Similarity=0.124 Sum_probs=84.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccC----------------CceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (221)
.+..+|+|+|++|+|||||+++|+.......... ..++++......+...++.+.+|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 4567999999999999999999874222100000 124455555555655678999999999999
Q ss_pred ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~ 130 (221)
+...+..+++.+|++++|+|+++....... .+...... .+.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH--ccCCEEEEecCCchh
Confidence 888888889999999999998876443333 22232322 379999999999986
No 179
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.75 E-value=4.7e-18 Score=130.19 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=86.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccccc-----
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI----- 84 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~----- 84 (221)
.++.++|+++|.+|+|||||+|+|+..... ......+++.......+...+..+.+|||||+..+......+++
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVV-RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCS-CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 467899999999999999999998765542 23344555555555555445679999999999887665555443
Q ss_pred ----CccEEEEEEeCCChhhhccH-HHHHHHHHhhcC---CCCEEEEEeCCCCC
Q 027593 85 ----HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (221)
Q Consensus 85 ----~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~i~v~nk~D~~ 130 (221)
.++++++|++++... +... ..|+..+..... ..|+++|+||+|+.
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 789999999987654 4443 366666665533 35999999999985
No 180
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.75 E-value=1.4e-17 Score=134.53 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCcccc----ccccccc---ccC
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKF----GGLRDGY---YIH 85 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~----~~~~~~~---~~~ 85 (221)
..|+|+|++|||||||+++++.... .......++..+....+... ...+.+||+||.... ......+ +..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~--~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC--EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc--cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 4589999999999999998654322 11222222333332223222 367899999997432 2222222 346
Q ss_pred ccEEEEEEeCCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHH
Q 027593 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 162 (221)
++.++.++|++ ...+..+..|...+.... ...|.++++||+|+................+..++.+||+++.|+++
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 89999999998 556666666655554432 36899999999999765222222344445678999999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 027593 163 PFLYLARKLAGDPN 176 (221)
Q Consensus 163 ~~~~l~~~l~~~~~ 176 (221)
++..|.+.+...+.
T Consensus 315 L~~~i~~~l~~~~~ 328 (416)
T 1udx_A 315 LKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999876554
No 181
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=1.3e-18 Score=140.28 Aligned_cols=83 Identities=19% Similarity=0.132 Sum_probs=46.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEE-----------------------ecC-eEEEEEEEeC
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF-----------------------TNC-GKIRFYCWDT 69 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~-~~~~~~~~D~ 69 (221)
++|+++|.+|||||||+|+++... ......+++|....... +.+ ..+.+.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 589999999999999999977655 22233344443333221 122 2478999999
Q ss_pred CCcccc----ccccc---ccccCccEEEEEEeCCCh
Q 027593 70 AGQEKF----GGLRD---GYYIHGQCAIIMFDVTAR 98 (221)
Q Consensus 70 ~g~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 98 (221)
||.... ..... .+++.+|++++|+|+++.
T Consensus 79 pG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 997542 22222 447899999999999875
No 182
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.73 E-value=1.5e-17 Score=127.90 Aligned_cols=120 Identities=14% Similarity=0.142 Sum_probs=85.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccc-------
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY------- 82 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~------- 82 (221)
..+.++|+++|.+|+|||||+|+|+...+ .......+++.......+...+..+.+|||||...+......+
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGERV-VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35689999999999999999999776554 2234455566665555555566889999999987665433211
Q ss_pred --ccCccEEEEEEeCCChhhhccH-HHHHHHHHhhcCC---CCEEEEEeCCCCCc
Q 027593 83 --YIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCEN---IPIVLCGNKVDVKN 131 (221)
Q Consensus 83 --~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~---~p~i~v~nk~D~~~ 131 (221)
...+|++++|+|++.. ++... ..|+..+...... .|+++|+||+|+..
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 2368999999998653 45443 3666666554332 69999999999864
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.73 E-value=6.5e-18 Score=131.67 Aligned_cols=162 Identities=17% Similarity=0.238 Sum_probs=83.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC-CCCCcccC------CceeEeeeEEEEe--cCeEEEEEEEeCCCc-------ccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTG-EFEKKYEP------TIGVEVHPLDFFT--NCGKIRFYCWDTAGQ-------EKF 75 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~-~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~D~~g~-------~~~ 75 (221)
..++|+|+|++|||||||++++.+. .+.....+ +.+.........+ .+....+.+||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999995543 33222100 0111111122222 334578999999997 434
Q ss_pred ccccc-------ccccC-------------ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-c
Q 027593 76 GGLRD-------GYYIH-------------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V 134 (221)
Q Consensus 76 ~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~ 134 (221)
..... .++.. +.+++++.+.+ ..++..+.. ..+.......|+++|+||+|+.... .
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e~ 173 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKER 173 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHHH
Confidence 33332 23222 22344443322 224444431 3333334567999999999987532 1
Q ss_pred c---HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhCCCCC
Q 027593 135 K---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 177 (221)
Q Consensus 135 ~---~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~ 177 (221)
. .+..+++...+++++++|++++ +++++|..+++.+....++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~ 218 (301)
T 2qnr_A 174 ERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPF 218 (301)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence 1 2334567778899999999999 9999999999998765443
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.72 E-value=5e-17 Score=139.58 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=85.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc--CCCCCc--------cc------CCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------YE------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~--~~~~~~--------~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (221)
..+..+|+|+|++|+|||||+++|+. +..... .. ...+++.......+...+..+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 45678999999999999999999874 322110 00 023444444444444456889999999999
Q ss_pred cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
.+...+..+++.+|++++|+|+++...+.....|... .. .+.|+++|+||+|+..
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~-~~--~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA-TT--YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHH-HH--TTCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHH-HH--cCCCEEEEEECCCccc
Confidence 9888888889999999999999988777666666542 22 2799999999999864
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.71 E-value=1.5e-16 Score=136.82 Aligned_cols=119 Identities=18% Similarity=0.104 Sum_probs=84.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcC--CCCCc--c------------cCCceeEeeeEEEEecCe-------EEEEEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK--Y------------EPTIGVEVHPLDFFTNCG-------KIRFYC 66 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~--~~~~~--~------------~~~~~~~~~~~~~~~~~~-------~~~~~~ 66 (221)
..+..+|+|+|+.|+|||||+++|+.. .+... . ....+.+.......+... ...+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 345689999999999999999998642 21110 0 002334444333333322 389999
Q ss_pred EeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 67 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
|||||+.+|...+..+++.+|++++|+|+++.........|..... .+.|+++++||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH---cCCCEEEEEeCCCccc
Confidence 9999999988888888999999999999998766555545543221 3789999999999854
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.69 E-value=2.2e-16 Score=135.62 Aligned_cols=109 Identities=13% Similarity=0.139 Sum_probs=76.6
Q ss_pred EEEEEeCCCcccc---cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccH--
Q 027593 63 RFYCWDTAGQEKF---GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-- 136 (221)
Q Consensus 63 ~~~~~D~~g~~~~---~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~-- 136 (221)
.+.+|||||.... ......++..+|++++|+|+++..+......|...+.. .+.|+++|+||+|+.... ...
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhh
Confidence 5899999996542 33445678899999999999988777666556544432 267899999999986432 000
Q ss_pred --H------HH-----H-HHHh--------cCceEEEeecC--------------CCCChHHHHHHHHHHHhC
Q 027593 137 --K------QV-----T-FHRK--------KNLQYYEISAK--------------SNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 137 --~------~~-----~-~~~~--------~~~~~~~~s~~--------------~~~~i~~~~~~l~~~l~~ 173 (221)
+ .. . +... ...+++++|++ ++.|+.+++..|.+.+..
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 0 01 0 1111 12468999999 999999999999887754
No 187
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.69 E-value=2.1e-16 Score=132.24 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=88.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCC------------------CC--CcccCCceeEeeeEEEEecCeEEEEEEEeCCCc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGE------------------FE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (221)
.-+|+|+|+.++|||||..+|+... .. .......|+|......++.+++..++++||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 4689999999999999999986311 00 112334567777777777778899999999999
Q ss_pred ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
.+|.......++-+|++++|+|+...--......|...... ++|.++++||+|...
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTTSCC
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh---CCceEEEEecccchh
Confidence 99999999999999999999999988665656666555443 899999999999754
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.69 E-value=3.8e-16 Score=122.59 Aligned_cols=113 Identities=10% Similarity=0.078 Sum_probs=70.7
Q ss_pred EEEEEEeCCCccc-------------ccccccccccCccEEEEEEeCCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027593 62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (221)
Q Consensus 62 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~i~v~nk~ 127 (221)
..+.+|||||... +......++..+|++++|+|..+.. .......+...+.. .+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 5799999999753 2334455678999999999974432 21222233333322 378999999999
Q ss_pred CCCcccc-cHHHHHH-HHhcCceEEEeecC---C---CCChHHHHHHHHHHHhCCCC
Q 027593 128 DVKNRQV-KAKQVTF-HRKKNLQYYEISAK---S---NYNFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 128 D~~~~~~-~~~~~~~-~~~~~~~~~~~s~~---~---~~~i~~~~~~l~~~l~~~~~ 176 (221)
|+..... ..+.... ....+..++++++. . +.|+.+++..+...+...+.
T Consensus 209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~ 265 (315)
T 1jwy_B 209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI 265 (315)
T ss_dssp TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence 9875432 1222210 01122456665554 4 68889999999998876654
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=127.75 Aligned_cols=157 Identities=15% Similarity=0.204 Sum_probs=77.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcc--------cCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc------
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------ 77 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------ 77 (221)
-.++|+|+|++|||||||++.|++..+.... .++.+...........+....+.+||++|...+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 4689999999999999999997655442111 11111111111111122335789999999764311
Q ss_pred -------------------cccccccCccEEEEEEeCCCh-hhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-cc
Q 027593 78 -------------------LRDGYYIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK 135 (221)
Q Consensus 78 -------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~ 135 (221)
....++..+++.+++|..... .++.... .|+..+. .+.|+|+|+||+|+.... ..
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHH
Confidence 123345566655555554433 4555554 4555553 378999999999986532 22
Q ss_pred ---HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593 136 ---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l 171 (221)
......+...+++++++|++++.++.++|..+...+
T Consensus 187 ~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 187 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 123355667789999999999999998877776643
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.64 E-value=1.2e-16 Score=127.77 Aligned_cols=153 Identities=12% Similarity=0.124 Sum_probs=96.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCc---------------------------------------------
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI--------------------------------------------- 46 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~--------------------------------------------- 46 (221)
.-.+|+|+|++|||||||+|+|++..+.+......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34599999999999999999988765533221111
Q ss_pred -------eeEeeeEEEEec-CeEEEEEEEeCCCcccc-------------cccccccccCccEEEEEEeCCChhhhccHH
Q 027593 47 -------GVEVHPLDFFTN-CGKIRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVP 105 (221)
Q Consensus 47 -------~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 105 (221)
+.+.......+. .....+.+|||||...+ ......++..++++++|++..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 000011111111 12346899999998765 344566788999999999876543332 2
Q ss_pred HHHHHHHhhc-CCCCEEEEEeCCCCCccc-ccHHHH-HHHHhcCceEEEeecCCCCChHHHHHH
Q 027593 106 TWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 106 ~~~~~~~~~~-~~~p~i~v~nk~D~~~~~-~~~~~~-~~~~~~~~~~~~~s~~~~~~i~~~~~~ 166 (221)
.|...+.... .+.|+++|+||+|+.... ...+.. ......+.+|+.+++.++.++++.+..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 3333333332 367999999999986532 222222 234456788999999998887665443
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.64 E-value=1.5e-16 Score=126.86 Aligned_cols=157 Identities=11% Similarity=0.115 Sum_probs=92.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc----cCCcee----------------------Ee--------------
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGV----------------------EV-------------- 50 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~----~~~~~~----------------------~~-------------- 50 (221)
...++|+|+|.+|||||||+|+|++..+.+.. ...++. +.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999997766653221 111221 00
Q ss_pred ---------eeEEEEecC-eEEEEEEEeCCCccc-------------ccccccccccCcc-EEEEEEeCCChhhhccHHH
Q 027593 51 ---------HPLDFFTNC-GKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQ-CAIIMFDVTARLTYKNVPT 106 (221)
Q Consensus 51 ---------~~~~~~~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~ 106 (221)
....+.+.+ ....+.+|||||... +......|+...+ ++++|.+++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 001111111 135799999999643 2233445565555 5555666654322222222
Q ss_pred HHHHHHhhcCCCCEEEEEeCCCCCcccc-cHHHHH---HHHhcC-ceEEEeecCCCCChHHHHHHHHH
Q 027593 107 WHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVT---FHRKKN-LQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 107 ~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~~~~~~---~~~~~~-~~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
+...+.. .+.|+++|+||+|+.+... ..+... .....+ .+++++|++++.|+++++..+..
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3333322 3789999999999975432 122111 111123 35788999999999999988876
No 192
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.63 E-value=2.1e-16 Score=123.17 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=104.1
Q ss_pred HHHHHHhcCCCC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh-hhccHH
Q 027593 28 TFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVP 105 (221)
Q Consensus 28 tli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 105 (221)
+|+.+++.+.|. ..+.+|.|..+. .. +.... .+.+||+ +++++.++..+++++|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 678888888887 778889994443 33 22222 7899999 8899999999999999999999999987 678888
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcC--ceEEEeecCCCCChHHHHHHHH
Q 027593 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 106 ~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~ 168 (221)
.|+..+.. .+.|+++|+||+|+.+.....+..+++.... ++++++||++|.|++++|..+.
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 89887654 4899999999999975322222334444455 8999999999999999987654
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.62 E-value=4e-16 Score=124.40 Aligned_cols=103 Identities=8% Similarity=-0.029 Sum_probs=70.1
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHH-H
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-V 139 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~-~ 139 (221)
+..+.+|||||... ........+|.+++|+|.........+... ....|.++|+||+|+......... .
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 46899999999432 223345789999999998766544333211 114689999999998653221111 1
Q ss_pred HHHH----------hcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 140 ~~~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
.+.. ..+.+++.+||++|.|+++++.+|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1111 114789999999999999999999987754
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.59 E-value=1e-15 Score=133.92 Aligned_cols=117 Identities=16% Similarity=0.197 Sum_probs=85.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCC--CC------cc------cCCceeEeeeEEEE----------------ecCe
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK------KY------EPTIGVEVHPLDFF----------------TNCG 60 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~--~~------~~------~~~~~~~~~~~~~~----------------~~~~ 60 (221)
....+|+|+|+.|+|||||+++|+.... .. .+ ....|.|....... .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 4568999999999999999999875311 00 00 01122222222111 1334
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~ 130 (221)
++.+.+|||||+.+|...+..+++.+|++++|+|+++..++.....|..... .+.|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCcc
Confidence 7899999999999999988999999999999999999988877766655433 378999999999986
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.58 E-value=4.3e-15 Score=110.68 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=90.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccCCceeEee--------eEEEEec------------------CeE
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVH--------PLDFFTN------------------CGK 61 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~----~~~~~~~~~~--------~~~~~~~------------------~~~ 61 (221)
+..+|+++|.+|||||||+++|+....... .....+.+.. .....++ ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457999999999999999999775421110 0001110000 0001111 123
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccH-HHH
Q 027593 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-KQV 139 (221)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~-~~~ 139 (221)
..+.+|||+|+..... .+....+.+++|+|+..... ....+.... ..|.++++||+|+.... ... +..
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~-----~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEIF-----RVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHHH-----HTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhhh-----hcCCEEEEecccCCcchhhHHHHHH
Confidence 5788999998521111 11124678899999876532 111111111 57899999999986431 122 222
Q ss_pred HHHHh--cCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 140 TFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 140 ~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
..... ...+++++|+++|.|+++++.+|.+.+..
T Consensus 179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 33333 25789999999999999999999987643
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.57 E-value=3e-14 Score=112.86 Aligned_cols=82 Identities=18% Similarity=0.047 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE--EEEecCe---------------EEEEEEEeCCCccccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCG---------------KIRFYCWDTAGQEKFG 76 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~~~D~~g~~~~~ 76 (221)
++|+++|.+|||||||+|+++..... ....+++|..+. .+.+.+. ...+.+|||||+..+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~--v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE--AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 68999999999999999998875531 122222222222 2222221 2579999999987653
Q ss_pred ----ccccc---cccCccEEEEEEeCCC
Q 027593 77 ----GLRDG---YYIHGQCAIIMFDVTA 97 (221)
Q Consensus 77 ----~~~~~---~~~~~~~~i~v~d~~~ 97 (221)
.+... +++.+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23222 4789999999999986
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.57 E-value=1.8e-15 Score=120.19 Aligned_cols=102 Identities=9% Similarity=-0.021 Sum_probs=62.4
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH-HHH
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV 139 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~-~~~ 139 (221)
+..+.++||+|.... ...+...+|.+++|+|++.......+.. .+ -..|.++|+||+|+....... ...
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~~ 235 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQA 235 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHHH
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHHH
Confidence 457899999995421 2334678999999999987533221111 11 146889999999986421111 111
Q ss_pred HHHH----------hcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 140 ~~~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
.+.. ....+++.+|++++.|+++++.+|.+.+.
T Consensus 236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1111 12357899999999999999999988763
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.55 E-value=6.4e-15 Score=123.36 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=77.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCceeEeeeEEEEec-------Ce----------------E-----
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTN-------CG----------------K----- 61 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~----------------~----- 61 (221)
...++|+|+|.+|+|||||+|+|++..+.. .....++++... .+... +. +
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE-EEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE-EEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 356899999999999999999988766531 112222211110 00000 00 0
Q ss_pred ------------EEEEEEeCCCccc-----------ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCC
Q 027593 62 ------------IRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI 118 (221)
Q Consensus 62 ------------~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 118 (221)
..+.+|||||... +......++..+|++++|+|+++.........|+..+... ..
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~ 219 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--ED 219 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CC
Confidence 2589999999764 2233445678899999999998755555555565554432 57
Q ss_pred CEEEEEeCCCCCcc
Q 027593 119 PIVLCGNKVDVKNR 132 (221)
Q Consensus 119 p~i~v~nk~D~~~~ 132 (221)
|+++|+||+|+...
T Consensus 220 pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 220 KIRVVLNKADMVET 233 (550)
T ss_dssp GEEEEEECGGGSCH
T ss_pred CEEEEEECCCccCH
Confidence 89999999998753
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.55 E-value=1.1e-15 Score=130.12 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCCC------c--------ccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEK------K--------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~--~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 77 (221)
-+|+|+|+.++|||||..+|+. |.... . .....|+|......++.+.+..++++||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999763 21111 0 011236677777777778889999999999999999
Q ss_pred cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
.....++-+|++++|+|+...--......|...... +.|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc---CCCeEEEEecccccc
Confidence 999999999999999999987555555566555444 789999999999754
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.54 E-value=4.1e-14 Score=105.71 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=85.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEee------------eEEEEec-Ce-----------------
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH------------PLDFFTN-CG----------------- 60 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~----------------- 60 (221)
.+.++|+|+|.+|||||||+++|+.+.+......+.+.+.. .....++ +.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35689999999999999999998866544322233332221 1112221 11
Q ss_pred --EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHH
Q 027593 61 --KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAK 137 (221)
Q Consensus 61 --~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~ 137 (221)
...+.++|++|..... ..+-...+..+.+.++........ .....+ ..|.++|+||+|+.... ...+
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~-----~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM-----KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH-----TTCSEEEEECGGGHHHHTCCHH
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh-----hcCCEEEEeccccCchhHHHHH
Confidence 1145555655521110 011112234455666432211110 011111 57889999999986532 2222
Q ss_pred -HHHHHHh--cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 138 -QVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 138 -~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
....... .+.+++++|+++|.|++++|..|.+.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 2233333 3679999999999999999999998764
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.53 E-value=6.1e-15 Score=116.89 Aligned_cols=102 Identities=12% Similarity=-0.005 Sum_probs=65.2
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV- 139 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~- 139 (221)
+..+.+|||||...... .....+|++++|+|++....+..+... . .+.|.++|+||+|+..........
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h----hcccCEEEEECCCCCChHHHHHHHH
Confidence 46799999999654332 246789999999999765443332221 1 146789999999997532111111
Q ss_pred HHH---Hh-------cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 140 TFH---RK-------KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 140 ~~~---~~-------~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
.+. .. ...+++++|+++|.|+++++..|...+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111 11 1357899999999999999999988664
No 202
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.51 E-value=1.5e-13 Score=118.55 Aligned_cols=116 Identities=20% Similarity=0.187 Sum_probs=83.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCC--------CCC--------cccCCceeEeeeEEEEec-------CeEEEEEEEeC
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGE--------FEK--------KYEPTIGVEVHPLDFFTN-------CGKIRFYCWDT 69 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~D~ 69 (221)
.-+|+|+|+.++|||||..+|+... ... ......|+|.....+++. ++++.++++||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 3479999999999999999977311 100 112234556655555442 23689999999
Q ss_pred CCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 70 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~ 131 (221)
||+.+|.......++-+|++++|+|+...--......|...... +.|.++++||+|...
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEccccccC
Confidence 99999999999999999999999999987665555667666555 899999999999743
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.47 E-value=3.9e-13 Score=107.01 Aligned_cols=82 Identities=13% Similarity=-0.069 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEE--EecC-------------------eEEEEEEEeCCCc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF--FTNC-------------------GKIRFYCWDTAGQ 72 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------------~~~~~~~~D~~g~ 72 (221)
++|+++|.+|||||||+|+++.... .....+++|..+... .+.+ ....+.+|||||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~--~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA--LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT--TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 6899999999999999999775431 111112222222111 1111 2357999999998
Q ss_pred ccccc----ccc---ccccCccEEEEEEeCCC
Q 027593 73 EKFGG----LRD---GYYIHGQCAIIMFDVTA 97 (221)
Q Consensus 73 ~~~~~----~~~---~~~~~~~~~i~v~d~~~ 97 (221)
..... ... ..++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 76532 222 23689999999999985
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.46 E-value=2e-13 Score=104.28 Aligned_cols=113 Identities=13% Similarity=-0.020 Sum_probs=68.6
Q ss_pred EEEEEEeCCCccccccccc------ccccCccEEEEEEeCCChhhhccHHHHHHHH-H-hhcCCCCEEEEEeCCCCCccc
Q 027593 62 IRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-C-RVCENIPIVLCGNKVDVKNRQ 133 (221)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~-~-~~~~~~p~i~v~nk~D~~~~~ 133 (221)
..+.+|||||+........ ..+.. +++++++|+................ . ....+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5799999999875433221 13455 7888888875433322221111111 1 111378999999999986532
Q ss_pred ccHHHHH----------H------------------HHhc--CceEEEeecCCCCChHHHHHHHHHHHhCCC
Q 027593 134 VKAKQVT----------F------------------HRKK--NLQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 134 ~~~~~~~----------~------------------~~~~--~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~ 175 (221)
...+..+ . .... ..+++++|++++.|+++++.+|.+.+...+
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 259 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCG 259 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcccc
Confidence 1110000 0 1222 347999999999999999999998876443
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.45 E-value=1.8e-13 Score=117.34 Aligned_cols=165 Identities=13% Similarity=0.153 Sum_probs=99.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccC--C-------------------------------------------
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--T------------------------------------------- 45 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~--~------------------------------------------- 45 (221)
..-.+|+|+|.+++|||||+|++++..+.+.... |
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4567999999999999999999876554221100 0
Q ss_pred ----ceeEeeeEEEEecC-eEEEEEEEeCCCccccc-------------ccccccc-cCccEEEEEEeCCChhhhccHHH
Q 027593 46 ----IGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFG-------------GLRDGYY-IHGQCAIIMFDVTARLTYKNVPT 106 (221)
Q Consensus 46 ----~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~-------------~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 106 (221)
.+++.......+.+ ....+.++||||..... .....|+ ..+|++++|+|++..........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 01111111222111 12357899999965411 1222233 57799999999987644443323
Q ss_pred HHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHh----cC-ceEEEeecCCCCChHHHHHHHHHH---HhCCCCC
Q 027593 107 WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK----KN-LQYYEISAKSNYNFEKPFLYLARK---LAGDPNL 177 (221)
Q Consensus 107 ~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~----~~-~~~~~~s~~~~~~i~~~~~~l~~~---l~~~~~~ 177 (221)
+...+.. .+.|+++|+||+|+............... .+ .+++.+||++|.|+++++..+... +...|.+
T Consensus 209 ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y 285 (772)
T 3zvr_A 209 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY 285 (772)
T ss_dssp HHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch
Confidence 4444433 27899999999998754322211111111 12 367889999999999999999874 5455544
No 206
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.3e-13 Score=109.69 Aligned_cols=116 Identities=13% Similarity=-0.014 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc-------cccccC
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------DGYYIH 85 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~~~ 85 (221)
..+|+++|.|+||||||+|+++... ......+++|..+....+...+.++.++||||........ ...++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 3689999999999999999966433 4456678888888887777777899999999975432211 223678
Q ss_pred ccEEEEEEeCCChhhhc-cHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593 86 GQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 86 ~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~p~i~v~nk~D~~ 130 (221)
+|++++|+|++++.... .+...+..+......+|.++++||.|..
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 99999999999864321 1112222221223467888999999964
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.30 E-value=1.5e-12 Score=102.83 Aligned_cols=102 Identities=8% Similarity=-0.018 Sum_probs=61.4
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccH---
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA--- 136 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~--- 136 (221)
+..+.++||+|..... ......+|.+++++|+........+.... . ..+.++++||+|+.. .....
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h----ccccEEEEEchhccCchhHHHHHH
Confidence 5689999999965321 22356889999999976432211111111 1 235677889999643 22111
Q ss_pred HHHHHHH--h------cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 137 KQVTFHR--K------KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 137 ~~~~~~~--~------~~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
.....+. . ...+++.+|++++.|+++++..|.+.+.
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1111111 0 1346888999999999999999988653
No 208
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.25 E-value=4.8e-12 Score=101.22 Aligned_cols=88 Identities=17% Similarity=-0.006 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEe--cCe---------------EEEEEEEeCCCccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCG---------------KIRFYCWDTAGQEK 74 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~D~~g~~~ 74 (221)
..++|+++|.+|||||||+|+++.... .....+++|..+....+ .+. ...+.+|||||...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 468999999999999999999775543 23334444444333322 221 23599999999876
Q ss_pred ccc-------cccccccCccEEEEEEeCCChhhh
Q 027593 75 FGG-------LRDGYYIHGQCAIIMFDVTARLTY 101 (221)
Q Consensus 75 ~~~-------~~~~~~~~~~~~i~v~d~~~~~s~ 101 (221)
... .+..+++.+|++++|+|+.+..++
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC------
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 543 234557899999999999876554
No 209
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.21 E-value=5.7e-11 Score=92.46 Aligned_cols=94 Identities=16% Similarity=0.088 Sum_probs=75.0
Q ss_pred cccccccccccccCccEEEEEEeCCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc---cHHHHHHHHhcCc
Q 027593 72 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNL 147 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~---~~~~~~~~~~~~~ 147 (221)
++++..+.+.+++++|.+++|+|++++. ++..+..|+..+.. .+.|.++|+||+|+.+... ..+........+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~ 143 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY 143 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence 6667778888999999999999999886 88878888886655 4899999999999975431 2233455566688
Q ss_pred eEEEeecCCCCChHHHHHHH
Q 027593 148 QYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 148 ~~~~~s~~~~~~i~~~~~~l 167 (221)
+++++||++|.|+++++..+
T Consensus 144 ~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 144 DVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp EEEECCTTTCTTHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHhhc
Confidence 99999999999998887654
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.02 E-value=4e-10 Score=81.71 Aligned_cols=104 Identities=6% Similarity=-0.058 Sum_probs=67.9
Q ss_pred CCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHH----hh--cCCCCEEEEEeCC-CCCcccccHHHH--
Q 027593 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC----RV--CENIPIVLCGNKV-DVKNRQVKAKQV-- 139 (221)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~----~~--~~~~p~i~v~nk~-D~~~~~~~~~~~-- 139 (221)
.+|+...+..|..|+.++|++|||+|++|...++ .+..+..+. .. ..+.|++|++||. |+...-...+..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3478889999999999999999999999986654 333332222 21 2478999999995 675533222211
Q ss_pred -HHH-HhcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 140 -TFH-RKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 140 -~~~-~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
.+. ....+.++.|||.+|+|+.+.++||...+..
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 111 1245678999999999999999999887643
No 211
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.02 E-value=3e-11 Score=96.47 Aligned_cols=135 Identities=11% Similarity=0.047 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCC-----CCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc----c--
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGE-----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD----G-- 81 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~----~-- 81 (221)
..+|+++|.+|+|||||+|+++... ........+|+|.....+.+..+ +.++||||......... .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 4689999999999999999976542 12234566777777776665543 78999999654332111 1
Q ss_pred --c--ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-HHHHhcCceEEEee
Q 027593 82 --Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEIS 153 (221)
Q Consensus 82 --~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~~~~~~~~~s 153 (221)
+ ....+.++++++.........+.. +..+.. .+.|+++++||.|........... .+.+..+....+.+
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVSG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSSC
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE-EEEecC--CCceEEEEecCccccccccHHHHHHHHHHHhCCccCCCc
Confidence 1 245677888887643211111110 000111 267999999999987654443333 33344454444443
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=7.6e-11 Score=94.24 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=81.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCC----CCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc--------c
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGE----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------D 80 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~ 80 (221)
..+|+++|.+|+|||||+|+++... ........+|+|.....+.+... +.++||||........ .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 4589999999999999999966531 12333455667777666655433 7899999965332111 1
Q ss_pred ccc--cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-HHHHhcCceEEEeecCCC
Q 027593 81 GYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 81 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~ 157 (221)
.++ ...+.++++++......+..+.. +..+. ..+.|+++++||.|........... .+.+..+....+.++...
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~~ 315 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRYA 315 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGGT
T ss_pred HHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchhh
Confidence 111 56788888888743311111111 00011 1267999999999986644333333 344455555555554443
No 213
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.99 E-value=1.6e-10 Score=88.53 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
|.++....|++++..+|+++++|||+++ +|+...+.+.+.++++.
T Consensus 146 gGqkQRv~iAraL~~~P~lLlLDEPts~-----LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 146 FGQKKRVAIAGVLVMEPKVLILDEPTAG-----LDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHH
Confidence 4556668899999999999999999999 99999999999998875
No 214
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.99 E-value=1.1e-09 Score=82.23 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=43.1
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.+..+ |.++....|++++..+|+++++|||+++ +|+.......+.++++..
T Consensus 143 ~~~LS--gGq~QRv~iAral~~~p~llllDEPts~-----LD~~~~~~i~~~l~~l~~ 193 (235)
T 3tif_A 143 PNQLS--GGQQQRVAIARALANNPPIILADQPTWA-----LDSKTGEKIMQLLKKLNE 193 (235)
T ss_dssp GGGSC--HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 34444 4456668899999999999999999999 999999999999988754
No 215
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.99 E-value=2e-09 Score=85.79 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|-++....|++++..+|+++++|||+++ +|+..+.++...++++..
T Consensus 136 GGqrQRVaiArAL~~~P~lLLLDEPts~-----LD~~~~~~l~~~l~~l~~ 181 (381)
T 3rlf_A 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSN-----LDAALRVQMRIEISRLHK 181 (381)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHH
Confidence 4556668899999999999999999999 999999999999988754
No 216
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.97 E-value=5.2e-10 Score=88.59 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++....|++++..+|+++++|||+++ +|+.....+.+.++++..
T Consensus 166 GGqkQRVaIArAL~~~P~lLLlDEPTs~-----LD~~~~~~i~~lL~~l~~ 211 (366)
T 3tui_C 166 GGQKQRVAIARALASNPKVLLCDQATSA-----LDPATTRSILELLKDINR 211 (366)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcc-----CCHHHHHHHHHHHHHHHH
Confidence 4556668899999999999999999999 999999999999998754
No 217
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.96 E-value=3.6e-09 Score=83.69 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|-++....|++++..+|+++++|||.++ +|+..+++....++++..
T Consensus 148 GGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 193 (355)
T 1z47_A 148 GGQQQRVALARALAPRPQVLLFDEPFAA-----IDTQIRRELRTFVRQVHD 193 (355)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTCC-----SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988753
No 218
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.96 E-value=1.4e-09 Score=82.58 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.++....|++++..+|+++++|||+++ +|+.......+.++++..+
T Consensus 149 gGq~qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~ 195 (256)
T 1vpl_A 149 KGMVRKLLIARALMVNPRLAILDEPTSG-----LDVLNAREVRKILKQASQE 195 (256)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc-----cCHHHHHHHHHHHHHHHhC
Confidence 4456668899999999999999999999 9999999999999887543
No 219
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.95 E-value=5.3e-09 Score=77.16 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+.++....|++++..+|+++++|||+++ +|+.......+.++++.
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~~~ 180 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVA-----IDEDSKHKVLKSILEIL 180 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTT-----SCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHH
Confidence 4556668899999999999999999999 99999999999998765
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.94 E-value=4.9e-09 Score=84.62 Aligned_cols=60 Identities=22% Similarity=0.383 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcc--cCCceeEeeeEEEEecC--eEEEEEEEeCCCcc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTNC--GKIRFYCWDTAGQE 73 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~ 73 (221)
++++|+|++|+|||||+|.+++-...... ....+.......+.... -...+.++|++|..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 57999999999999999985543222111 11223233333222222 22478899998853
No 221
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.94 E-value=7.7e-10 Score=84.44 Aligned_cols=46 Identities=33% Similarity=0.351 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhC------CCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAG------DPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~------~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++....|++++.. +|+++++|||+++ +|+.......+.++++..
T Consensus 144 gGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~-----LD~~~~~~i~~~l~~l~~ 195 (266)
T 4g1u_C 144 GGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSA-----LDLYHQQHTLRLLRQLTR 195 (266)
T ss_dssp HHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSS-----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCCCCCEEEEeCcccc-----CCHHHHHHHHHHHHHHHH
Confidence 445666889999998 9999999999999 999999999999988754
No 222
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.93 E-value=9.6e-10 Score=83.71 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.++....|++++..+|+++++|||+++ +|+...+...+.++++..+
T Consensus 162 gGqkQRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~~~~~l~~l~~~ 208 (263)
T 2olj_A 162 GGQAQRVAIARALAMEPKIMLFDEPTSA-----LDPEMVGEVLSVMKQLANE 208 (263)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhC
Confidence 4456668899999999999999999999 9999999999999887554
No 223
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.93 E-value=2.4e-09 Score=79.74 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.++....|++++..+|+++++|||+++ +|+...+...+.++++..+
T Consensus 143 gGq~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~~~~~l~~l~~~ 189 (224)
T 2pcj_A 143 GGEQQRVAIARALANEPILLFADEPTGN-----LDSANTKRVMDIFLKINEG 189 (224)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHC
Confidence 4455668899999999999999999999 9999999999999887544
No 224
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.92 E-value=9.6e-10 Score=88.10 Aligned_cols=85 Identities=15% Similarity=0.042 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEE--EEecCe---------------EEEEEEEeCCCccc
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCG---------------KIRFYCWDTAGQEK 74 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------~~~~~~~D~~g~~~ 74 (221)
...+|+++|++|||||||+|++++... ......++++..+.. +.+.+. ...+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~-a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTT-TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 367999999999999999999776432 123333444444333 233321 14689999999654
Q ss_pred ccc-------cccccccCccEEEEEEeCCC
Q 027593 75 FGG-------LRDGYYIHGQCAIIMFDVTA 97 (221)
Q Consensus 75 ~~~-------~~~~~~~~~~~~i~v~d~~~ 97 (221)
... .....++.+|+++.|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 322 22333678999999999864
No 225
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.92 E-value=6.8e-09 Score=82.13 Aligned_cols=44 Identities=32% Similarity=0.388 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA 207 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~ 207 (221)
|.++....|++++..+|+++++|||+++ +|+..+.+....+.++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~-----LD~~~r~~l~~~l~~~ 184 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSA-----LDEQLRRQIREDMIAA 184 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHH
Confidence 4556668899999999999999999999 9999999998877665
No 226
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.92 E-value=5.9e-09 Score=82.76 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=43.0
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.+.++ |.++....|++++..+|+++++|||.++ +|+..+.+....++++..
T Consensus 131 ~~~LS--GGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 181 (362)
T 2it1_A 131 PWQLS--GGQQQRVAIARALVKEPEVLLLDEPLSN-----LDALLRLEVRAELKRLQK 181 (362)
T ss_dssp GGGSC--HHHHHHHHHHHHHTTCCSEEEEESGGGG-----SCHHHHHHHHHHHHHHHH
T ss_pred hhhCC--HHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHHH
Confidence 34444 4456668899999999999999999999 999999999999988743
No 227
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.91 E-value=1.3e-08 Score=77.44 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
|.++....|++++..+|+++++|||+++ +|+...+...+.++++..+.
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~~~~~l~~l~~~g 203 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSA-----LDPELVGEVLRIMQQLAEEG 203 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhCC
Confidence 4456668899999999999999999999 99999999999998876543
No 228
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.91 E-value=4.5e-09 Score=79.89 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.++....|++++..+|+++++|||+++ +|+...+...+.++++..+
T Consensus 156 gGqkQrv~iAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~ 202 (257)
T 1g6h_A 156 GGQMKLVEIGRALMTNPKMIVMDEPIAG-----VAPGLAHDIFNHVLELKAK 202 (257)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHC
Confidence 4456668899999999999999999999 9999999999999987554
No 229
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.90 E-value=2.8e-09 Score=81.85 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.++....|++++..+|+++++|||+++ +|+...+.+.+.++++..
T Consensus 164 gGqkqRv~lAraL~~~p~lLlLDEPts~-----LD~~~~~~l~~~l~~l~~ 209 (279)
T 2ihy_A 164 TGEKQRVMIARALMGQPQVLILDEPAAG-----LDFIARESLLSILDSLSD 209 (279)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccc-----cCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 230
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.89 E-value=9.4e-10 Score=82.70 Aligned_cols=46 Identities=28% Similarity=0.319 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++....|++++..+|+++++|||+++ +|+...+...+.++++..
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~-----LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSA-----VDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSS-----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4455668899999999999999999999 999999999999988743
No 231
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.89 E-value=6.9e-09 Score=78.03 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.++....|++++..+|+++++|||+++ +|+...+...+.++++..+
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~~~~~ 188 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLG-----LAPILVSEVFEVIQKINQE 188 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence 4455668899999999999999999999 9999999999999887543
No 232
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.88 E-value=2e-08 Score=80.03 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=42.9
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.+.++ |.++....|++++..+|+++++|||.++ +|+..+......++++..
T Consensus 137 ~~~LS--GGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 187 (372)
T 1g29_1 137 PRELS--GGQRQRVALGRAIVRKPQVFLMDEPLSN-----LDAKLRVRMRAELKKLQR 187 (372)
T ss_dssp GGGSC--HHHHHHHHHHHHHHTCCSEEEEECTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred cccCC--HHHHHHHHHHHHHhcCCCEEEECCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence 34444 4456668899999999999999999999 999999999999988753
No 233
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.87 E-value=8e-09 Score=79.01 Aligned_cols=23 Identities=35% Similarity=0.759 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~ 35 (221)
.++++|+|++|+|||||+|.+++
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999998554
No 234
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.87 E-value=2.1e-09 Score=84.90 Aligned_cols=46 Identities=24% Similarity=0.337 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++....|++++..+|+++++|||.++ +|+..++.....++++..
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~-----LD~~~~~~l~~~l~~l~~ 175 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSA-----LDPRTQENAREMLSVLHK 175 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTT-----SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988754
No 235
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.86 E-value=1.1e-08 Score=81.13 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++....|++++..+|+++++|||.++ +|+..++.....++++..
T Consensus 136 gGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 181 (359)
T 2yyz_A 136 GGQQQRVALARALVKQPKVLLFDEPLSN-----LDANLRMIMRAEIKHLQQ 181 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4556668899999999999999999999 999999999999988743
No 236
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.86 E-value=1.9e-08 Score=80.13 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=43.2
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.+.++|...+ ...|++++..+|+++++|||.++ +|+..+.+....++++..
T Consensus 139 ~~~LSGGq~Q--RvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 189 (372)
T 1v43_A 139 PAQLSGGQRQ--RVAVARAIVVEPDVLLMDEPLSN-----LDAKLRVAMRAEIKKLQQ 189 (372)
T ss_dssp TTTCCSSCHH--HHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHH--HHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence 4556655544 48899999999999999999999 999999999999988754
No 237
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.85 E-value=1.1e-08 Score=81.12 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++....|++++..+|+++++|||.++ +|+..+.+..+.++++..
T Consensus 143 GGq~QRvalAraL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 188 (353)
T 1oxx_K 143 GAQQQRVALARALVKDPSLLLLDEPFSN-----LDARMRDSARALVKEVQS 188 (353)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999 999999999999988743
No 238
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.83 E-value=2.1e-08 Score=75.91 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+++++|||+++ +|+...+...+.++++..+
T Consensus 131 gGq~qrv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~ 177 (253)
T 2nq2_C 131 GGQRQLILIARAIASECKLILLDEPTSA-----LDLANQDIVLSLLIDLAQS 177 (253)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEESSSSTT-----SCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 4455668899999999999999999999 9999999999999887543
No 239
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.82 E-value=6.1e-09 Score=79.19 Aligned_cols=104 Identities=6% Similarity=-0.091 Sum_probs=73.1
Q ss_pred CCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHH----HHHhh--cCCCCEEEEEeC-CCCCcccccHHHH--
Q 027593 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR----DLCRV--CENIPIVLCGNK-VDVKNRQVKAKQV-- 139 (221)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~----~~~~~--~~~~p~i~v~nk-~D~~~~~~~~~~~-- 139 (221)
.+||...+..|..|+.++|++|+|+|++|.+.++ .+..+. .+... ..+.|++|++|| .|+...-...+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4678889999999999999999999999997765 332222 22221 358899999996 5786543222221
Q ss_pred -HHH-HhcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593 140 -TFH-RKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 140 -~~~-~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~ 173 (221)
.+. ......++.|||.+|+|+.+.++||...+..
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 111 1245678999999999999999999998754
No 240
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.82 E-value=1.9e-09 Score=81.62 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.++....|++++..+|+++++|||+++ +|+...+...+.++++..+
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~ 192 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSG-----LDIDALKVVARGVNAMRGP 192 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGT-----TCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhc
Confidence 4455567899999999999999999999 9999999999999988544
No 241
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.81 E-value=1.2e-08 Score=77.71 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+-++....|++++..+|+++++|||+++ +|+...+...+.++++.
T Consensus 131 gGqkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~L~~~~ 175 (263)
T 2pjz_A 131 AGQSVLVRTSLALASQPEIVGLDEPFEN-----VDAARRHVISRYIKEYG 175 (263)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccc-----cCHHHHHHHHHHHHHhc
Confidence 4456668899999999999999999999 99999999999998764
No 242
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.81 E-value=2.5e-08 Score=80.49 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=82.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCc-e--eEeeeEEEEecCeEEEEEEEeCCCccccccccccc-----c
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTI-G--VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----Y 83 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~-~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~ 83 (221)
...++|+|++|||||||+|.+.+ ...+ ...-.. + ++....... ......+.+||++|..........+ +
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G-l~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG-IGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT-CCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CeEEEEECCCCCcHHHHHHHHhC-CCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 35899999999999999998554 3221 111111 1 111111111 1111257899999864322212222 2
Q ss_pred cCccEEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCC---------cccccH---HHH-HHH----Hhc
Q 027593 84 IHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVK---------NRQVKA---KQV-TFH----RKK 145 (221)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~---------~~~~~~---~~~-~~~----~~~ 145 (221)
...+..++ ++... +...+ .+...+.. .+.|+++|.||.|+. +..... +.+ ... ...
T Consensus 147 ~~~~~~~~-lS~G~---~~kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 147 YEYDFFII-ISATR---FKKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GGCSEEEE-EESSC---CCHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCCeEE-eCCCC---ccHHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 23344443 55542 11111 12222222 268999999999862 111111 111 222 122
Q ss_pred ---CceEEEeec--CCCCChHHHHHHHHHHHhCCCCCc
Q 027593 146 ---NLQYYEISA--KSNYNFEKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 146 ---~~~~~~~s~--~~~~~i~~~~~~l~~~l~~~~~~~ 178 (221)
....+.+|+ ..+.|++++.+.+...+...+..+
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence 235788899 556679999999999887766544
No 243
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.81 E-value=1.9e-09 Score=83.78 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.+.....|++++..+|+++++|||+++ +|+...+.+.+.++++..
T Consensus 193 GGqrQRvaiARAL~~~p~iLlLDEPts~-----LD~~~~~~i~~~l~~l~~ 238 (306)
T 3nh6_A 193 GGEKQRVAIARTILKAPGIILLDEATSA-----LDTSNERAIQASLAKVCA 238 (306)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSSC-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHHHHHHHHHHHcC
Confidence 5567778999999999999999999999 999999999999988754
No 244
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.80 E-value=2.1e-08 Score=76.50 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.++....|++++..+|+++++|||+++ +|+...+...+.++++..+
T Consensus 141 gGq~qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~ 187 (266)
T 2yz2_A 141 GGEKRRVAIASVIVHEPDILILDEPLVG-----LDREGKTDLLRIVEKWKTL 187 (266)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCcccc-----CCHHHHHHHHHHHHHHHHc
Confidence 4455668899999999999999999999 9999999999999887543
No 245
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.76 E-value=4e-09 Score=87.11 Aligned_cols=152 Identities=13% Similarity=0.020 Sum_probs=82.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc-----CCCCCccc-----CC-----------ceeEeeeEEEE-------------
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLT-----GEFEKKYE-----PT-----------IGVEVHPLDFF------------- 56 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~-----~~~~~~~~-----~~-----------~~~~~~~~~~~------------- 56 (221)
.+...|+|+|++||||||+++++.. |....... +. .++........
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999652 22110000 00 00111110000
Q ss_pred ecCeEEEEEEEeCCCcccccc-cccc---c--ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCE-EEEEeCCCC
Q 027593 57 TNCGKIRFYCWDTAGQEKFGG-LRDG---Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDV 129 (221)
Q Consensus 57 ~~~~~~~~~~~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-i~v~nk~D~ 129 (221)
....+..+.++||||...... .... + ...++.+++|+|+..... .......+.. ..|+ .+|+||+|.
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~---~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD---KVDVASVIVTKLDG 252 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH---HHCCCCEEEECTTS
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh---hcCceEEEEeCCcc
Confidence 001346899999999753211 1111 1 226799999999987532 1222222322 2564 889999998
Q ss_pred CcccccHHHHHHHHhcCce------------------EEEeecCCCCC-hHHHHHHHHHH
Q 027593 130 KNRQVKAKQVTFHRKKNLQ------------------YYEISAKSNYN-FEKPFLYLARK 170 (221)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~------------------~~~~s~~~~~~-i~~~~~~l~~~ 170 (221)
..+... ........+.| .+.+|+..|.| +..+++.+...
T Consensus 253 ~~~~g~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGG--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTH--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHH--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 643211 11222222232 23467888888 88877777654
No 246
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.76 E-value=5.7e-09 Score=78.82 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHhCCCC-------CccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPN-------LHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~-------~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.+.....|++++..+|+ ++++|||+++ +|+...+...+.++++..+
T Consensus 129 gGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~ 182 (249)
T 2qi9_C 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS-----LDVAQQSALDKILSALSQQ 182 (249)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCccc-----CCHHHHHHHHHHHHHHHhC
Confidence 445566889999999999 9999999999 9999999999999987544
No 247
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.75 E-value=8.6e-09 Score=79.32 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=35.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (221)
...++|+++|.+|+|||||+|+++ +.........+|+|.....+... ..+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~-~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLA-KKNIAKTGDRPGITTSQQWVKVG---KELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH-TSCCC------------CCEEET---TTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHh-cCceeecCCCCCeeeeeEEEEeC---CCEEEEECcCcC
Confidence 356899999999999999999965 44444555667777665444332 257899999964
No 248
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.71 E-value=5.8e-09 Score=79.45 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (221)
++++++|.+|+|||||+|++... ......+++|+|.....+... ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 69999999999999999996644 333455666766655444332 2578999999764
No 249
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.69 E-value=4.9e-09 Score=80.21 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+++ +|+.....+.+.++++..
T Consensus 159 gGq~QRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~~~~ 204 (271)
T 2ixe_A 159 GGQRQAVALARALIRKPRLLILDNATSA-----LDAGNQLRVQRLLYESPE 204 (271)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHh
Confidence 4556668899999999999999999999 999999999999988753
No 250
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.68 E-value=6.6e-08 Score=73.79 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.++....|++++..+|+++++|||+++ +|+...+.+.+.++++..+
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~-----LD~~~~~~l~~~l~~l~~~ 213 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSG-----LDIDALKVVADGVNSLRDG 213 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHhc
Confidence 4556668899999999999999999999 9999999999999887544
No 251
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.66 E-value=6.9e-08 Score=72.42 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHH
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA 205 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~ 205 (221)
+.+.....|++++..+|+++++|||+++ +|+.......+.+.
T Consensus 130 gGqkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 130 GGQKQRVSLARAVYSNADIYLFDDPLSA-----VDAHVGKHIFENVI 171 (237)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTT-----SCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccc-----cCHHHHHHHHHHHH
Confidence 5556668899999999999999999999 99999999998884
No 252
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.65 E-value=9.6e-09 Score=77.57 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+.++....|++++..+|+++++|||+++ +|+...+.+.+.++++.
T Consensus 148 gGq~qRv~iAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~~~ 192 (247)
T 2ff7_A 148 GGQRQRIAIARALVNNPKILIFDEATSA-----LDYESEHVIMRNMHKIC 192 (247)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCCCSC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHc
Confidence 5566778899999999999999999999 99999999999998874
No 253
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.63 E-value=1.5e-08 Score=76.41 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+.+.....|++++..+|+++++|||+++ +|+...+.+.+.++++.
T Consensus 142 gGq~qrv~lAral~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 142 GGQRQRLAIARAFLRNPKILMLDEATAS-----LDSESESMVQKALDSLM 186 (243)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSCS-----SCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHhc
Confidence 4566678899999999999999999999 99999999999998875
No 254
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.61 E-value=6.2e-08 Score=77.35 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=79.2
Q ss_pred cccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH----H-HHHHHhcC
Q 027593 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----Q-VTFHRKKN 146 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~----~-~~~~~~~~ 146 (221)
.+.|......+.+..+++++|+|+++.. ..|...+.....+.|+++|+||+|+.......+ . .......+
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g 130 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG 130 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence 4667788888888999999999999864 345455555556899999999999965443221 1 12345556
Q ss_pred c---eEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCC
Q 027593 147 L---QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA 186 (221)
Q Consensus 147 ~---~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~ 186 (221)
. .++.+||++|.|+++++..|.+.. ....+.+.-.|..+
T Consensus 131 ~~~~~v~~iSA~~g~gi~~L~~~l~~~~-~~~~i~~vG~~nvG 172 (368)
T 3h2y_A 131 LKPEDVFLISAAKGQGIAELADAIEYYR-GGKDVYVVGCTNVG 172 (368)
T ss_dssp CCCSEEEECCTTTCTTHHHHHHHHHHHH-TTSCEEEEEBTTSS
T ss_pred CCcccEEEEeCCCCcCHHHHHhhhhhhc-ccceEEEecCCCCC
Confidence 6 799999999999999999998754 44455555555554
No 255
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.61 E-value=3.2e-07 Score=68.41 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHH
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAEL 204 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~ 204 (221)
+.++....|++++..+|+++++|||+++ +|+...+...+.+
T Consensus 133 gGqkqrv~lAral~~~p~lllLDEPts~-----LD~~~~~~i~~~l 173 (229)
T 2pze_A 133 GGQRARISLARAVYKDADLYLLDSPFGY-----LDVLTEKEIFESC 173 (229)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTT-----SCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECcccC-----CCHHHHHHHHHHH
Confidence 4466678899999999999999999999 9999999888863
No 256
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.60 E-value=5.6e-08 Score=81.22 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.+.....|++++..+|+++++|||+++ +|+.....+.+.++++..
T Consensus 141 gGe~Qrv~iA~aL~~~p~illlDEPts~-----LD~~~~~~l~~~l~~l~~ 186 (538)
T 3ozx_A 141 GGGLQRLLVAASLLREADVYIFDQPSSY-----LDVRERMNMAKAIRELLK 186 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHhC
Confidence 4556668899999999999999999999 999999999999988753
No 257
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.58 E-value=8.4e-08 Score=72.93 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+.+.....|++++..+|+++++|||+++ +|+...+...+.++++..
T Consensus 158 gGqkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~l~~ 203 (260)
T 2ghi_A 158 GGERQRIAIARCLLKDPKIVIFDEATSS-----LDSKTEYLFQKAVEDLRK 203 (260)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCCT-----TCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHhcC
Confidence 4566668899999999999999999999 999999999999988753
No 258
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.57 E-value=2.1e-07 Score=78.74 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++....|++++..+|+++++|||+++ +|+...+...+.++++..
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~ 528 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSA-----LDTESERAIQAALDELQK 528 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHcC
Confidence 4566668899999999999999999999 999999999999988753
No 259
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.57 E-value=1.1e-07 Score=79.45 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=43.1
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+..++ |.++....|++++..+|+++++|||+++ +|+.......+.++++..
T Consensus 383 ~~~LS--GGq~QRv~iAraL~~~p~lLlLDEPT~g-----LD~~~~~~i~~~l~~l~~ 433 (538)
T 3ozx_A 383 VNDLS--GGELQKLYIAATLAKEADLYVLDQPSSY-----LDVEERYIVAKAIKRVTR 433 (538)
T ss_dssp GGGCC--HHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHH
T ss_pred hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHH
Confidence 34455 4455568899999999999999999999 999999999999988753
No 260
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.54 E-value=2.2e-07 Score=71.47 Aligned_cols=101 Identities=12% Similarity=0.044 Sum_probs=69.7
Q ss_pred EeCCCcc-cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhc
Q 027593 67 WDTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK 145 (221)
Q Consensus 67 ~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~ 145 (221)
...||+. .........+..+|+++.|+|+.++.+..+. .+.....++|.++|+||+|+.+.........+....
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~ 78 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQ 78 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTT
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhc
Confidence 3467754 3344455668899999999999999887641 111222589999999999997643333334455556
Q ss_pred CceEEEeecCCCCChHHHHHHHHHHHh
Q 027593 146 NLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 146 ~~~~~~~s~~~~~~i~~~~~~l~~~l~ 172 (221)
+.+++.+|+.++.|+++++..+.+.+.
T Consensus 79 g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 79 GIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 789999999999999999888776553
No 261
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.7e-07 Score=79.37 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=42.2
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
++.++| .++....|++++..+|+++++|||+++ +|+.......+.++++.
T Consensus 465 ~~~LSG--GqkQRv~iAraL~~~p~lLlLDEPT~g-----LD~~~~~~i~~ll~~l~ 514 (608)
T 3j16_B 465 VQHLSG--GELQRVAIVLALGIPADIYLIDEPSAY-----LDSEQRIICSKVIRRFI 514 (608)
T ss_dssp SSSCCH--HHHHHHHHHHHTTSCCSEEEECCTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHH
Confidence 444554 445558899999999999999999999 99999999999998864
No 262
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.49 E-value=1.9e-07 Score=79.07 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=42.5
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
++.++ |.++....|++++..+|+++++|||+++ +|+.......+.++++.
T Consensus 469 ~~~LS--GGe~QRv~iAraL~~~p~lLlLDEPt~~-----LD~~~~~~l~~~l~~l~ 518 (607)
T 3bk7_A 469 VEDLS--GGELQRVAIAATLLRDADIYLLDEPSAY-----LDVEQRLAVSRAIRHLM 518 (607)
T ss_dssp GGGCC--HHHHHHHHHHHHHTSCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred hhhCC--HHHHHHHHHHHHHHhCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHH
Confidence 34444 4455568899999999999999999999 99999999999998874
No 263
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.7e-07 Score=79.30 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
|.+.....|++++..+|+++++|||+++ +|+.......+.++++..+.
T Consensus 224 gGe~Qrv~iAraL~~~p~llllDEPts~-----LD~~~~~~l~~~l~~l~~~g 271 (608)
T 3j16_B 224 GGELQRFAIGMSCVQEADVYMFDEPSSY-----LDVKQRLNAAQIIRSLLAPT 271 (608)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTT-----CCHHHHHHHHHHHHGGGTTT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECcccC-----CCHHHHHHHHHHHHHHHhCC
Confidence 5566678899999999999999999999 99999999999999886653
No 264
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.47 E-value=1.8e-07 Score=74.75 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=78.1
Q ss_pred CcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH----H-HHHHHhc
Q 027593 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----Q-VTFHRKK 145 (221)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~----~-~~~~~~~ 145 (221)
.++.|......++..++++++|+|+++..+ .|...+.....+.|+++|+||+|+.......+ . .......
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~ 131 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL 131 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence 367788888888889999999999998764 23333344445899999999999976433221 1 1234555
Q ss_pred Cc---eEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCC
Q 027593 146 NL---QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA 186 (221)
Q Consensus 146 ~~---~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~ 186 (221)
+. .++.+||++|.|+++++..|.+.+ ....+.+.-.|..+
T Consensus 132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~~-~~~~i~~vG~~nvG 174 (369)
T 3ec1_A 132 GLCPVDVCLVSAAKGIGMAKVMEAINRYR-EGGDVYVVGCTNVG 174 (369)
T ss_dssp TCCCSEEEECBTTTTBTHHHHHHHHHHHH-TTSCEEEECCTTSS
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHhhc-ccCcEEEEcCCCCc
Confidence 65 789999999999999999998754 44556666666655
No 265
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.46 E-value=3.9e-07 Score=73.95 Aligned_cols=90 Identities=14% Similarity=0.044 Sum_probs=53.0
Q ss_pred EEEEEEeCCCccccccc-cc-----ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc
Q 027593 62 IRFYCWDTAGQEKFGGL-RD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (221)
Q Consensus 62 ~~~~~~D~~g~~~~~~~-~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~ 135 (221)
..+.++||+|....... .. ......+.+++|+|+..... .......+... ..+..+|+||.|...+.
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~--~~i~gVIlTKlD~~~~g-- 255 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA--TPIGSIIVTKLDGSAKG-- 255 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS--CTTEEEEEECCSSCSSH--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh--CCCeEEEEECCCCcccc--
Confidence 67899999995432211 00 11235688999999886432 22233333321 34567899999986432
Q ss_pred HHHHHHHHhcCceEEEeecCCCCCh
Q 027593 136 AKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 136 ~~~~~~~~~~~~~~~~~s~~~~~~i 160 (221)
-.........+.|+.+++. |+++
T Consensus 256 G~~ls~~~~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 256 GGALSAVAATGAPIKFIGT--GEKI 278 (443)
T ss_dssp HHHHHHHHTTCCCEEEEEC--SSST
T ss_pred cHHHHHHHHHCCCEEEEEc--CCCh
Confidence 1233444456788877775 5555
No 266
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.45 E-value=8.1e-08 Score=81.29 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++.+..|++++..+|+++++|||+++ +|+...+...+.++++..
T Consensus 482 gGqrQrv~lARal~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~ 527 (587)
T 3qf4_A 482 GGQKQRLSIARALVKKPKVLILDDCTSS-----VDPITEKRILDGLKRYTK 527 (587)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESCCTT-----SCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHhCC
Confidence 5567778999999999999999999999 999999999999887643
No 267
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.44 E-value=8.4e-08 Score=81.39 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++....|++++..+|+++++|||+++ +|+...+...+.++++..
T Consensus 486 gGq~qrv~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~ 531 (595)
T 2yl4_A 486 GGQKQRIAIARALLKNPKILLLDEATSA-----LDAENEYLVQEALDRLMD 531 (595)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCSS-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECcccC-----CCHHHHHHHHHHHHHHhc
Confidence 4566778999999999999999999999 999999999999988754
No 268
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.43 E-value=1.4e-06 Score=67.09 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHH
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAEL 204 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~ 204 (221)
+.+.....|++++..+|+++++|||+++ +|+.....+.+.+
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l 202 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGY-----LDVLTEKEIFESC 202 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCccc-----CCHHHHHHHHHHH
Confidence 4556668899999999999999999999 9999999888753
No 269
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.42 E-value=3.5e-07 Score=76.56 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=42.4
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+..++| .++....|++++..+|+++++|||+.+ +|......+.+.++++.
T Consensus 399 ~~~LSG--Ge~qrv~lAraL~~~p~lLlLDEPt~~-----LD~~~~~~i~~~l~~l~ 448 (538)
T 1yqt_A 399 VNELSG--GELQRVAIAATLLRDADIYLLDEPSAY-----LDVEQRLAVSRAIRHLM 448 (538)
T ss_dssp GGGCCH--HHHHHHHHHHHHTSCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHH
Confidence 344444 455568899999999999999999999 99999999999998874
No 270
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.42 E-value=2e-07 Score=78.05 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
|-++....|++++..+|+++++|||+++ +|+.......+.++++..+
T Consensus 161 gGekQRv~iAraL~~~P~lLlLDEPTs~-----LD~~~~~~l~~~L~~l~~~ 207 (538)
T 1yqt_A 161 GGELQRVAIAAALLRNATFYFFDEPSSY-----LDIRQRLNAARAIRRLSEE 207 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHhc
Confidence 5556668899999999999999999999 9999999999999887543
No 271
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.42 E-value=3.5e-07 Score=77.51 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=43.7
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
++.++ |.+.....|++++..+|+++++|||+++ +|+.......+.++++..+
T Consensus 226 ~~~LS--GGekQRvaIAraL~~~P~lLlLDEPTs~-----LD~~~~~~l~~~L~~l~~~ 277 (607)
T 3bk7_A 226 LHQLS--GGELQRVAIAAALLRKAHFYFFDEPSSY-----LDIRQRLKVARVIRRLANE 277 (607)
T ss_dssp GGGCC--HHHHHHHHHHHHHHSCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred hhhCC--HHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHhc
Confidence 34444 4556668899999999999999999999 9999999999999887543
No 272
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.41 E-value=1.9e-07 Score=78.97 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++....|++++..+|+++++|||+++ +|+...+...+.++++..
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~ 528 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSA-----LDTESERAIQAALDELQK 528 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSS-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECcccc-----CCHHHHHHHHHHHHHHhC
Confidence 5566678899999999999999999999 999999999999988753
No 273
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.40 E-value=7.5e-08 Score=77.18 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
|-++....|++++..+|+++++|||.++ +|+..+.++...++++.
T Consensus 158 GGqrQRvalARAL~~~P~lLLLDEPts~-----LD~~~~~~l~~~l~~~~ 202 (390)
T 3gd7_A 158 HGHKQLMCLARSVLSKAKILLLDEPSAH-----LDPVTYQIIRRTLKQAF 202 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESHHHH-----SCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHh
Confidence 5567778999999999999999999999 99999999999888764
No 274
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.40 E-value=3.5e-08 Score=83.43 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++....|++++..+|+++++|||+++ +|+...+...+.++++..
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~ 525 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSA-----LDLESESIIQEALDVLSK 525 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHcC
Confidence 5567778999999999999999999999 999999999888887644
No 275
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.39 E-value=6e-08 Score=82.31 Aligned_cols=46 Identities=11% Similarity=0.272 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++....|++++..+|+++++|||+++ +|+...+...+.++++..
T Consensus 494 gGq~Qrv~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~ 539 (598)
T 3qf4_B 494 QGQRQLLAITRAFLANPKILILDEATSN-----VDTKTEKSIQAAMWKLME 539 (598)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEECCCCTT-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHcC
Confidence 5567778999999999999999999999 999999999999988753
No 276
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.37 E-value=5.1e-07 Score=75.91 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=40.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCccc-CCceeEeeeEEEE--e-cCeEEEEEEEeCCCccc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFF--T-NCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~~D~~g~~~ 74 (221)
..+.++|+|+|.+|+|||||+|++++....-... .+.+.+....... + ...+..+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3467899999999999999999966544211111 1222222222211 1 23446789999999654
No 277
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.36 E-value=5.2e-07 Score=64.15 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=28.8
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchH
Q 027593 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA 195 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~ 195 (221)
.+.++.+..|++++..+|.++++|||..+ +|+.
T Consensus 85 s~g~~qrv~iAral~~~p~~lllDEPt~~-----Ld~~ 117 (171)
T 4gp7_A 85 ESARKPLIEMAKDYHCFPVAVVFNLPEKV-----CQER 117 (171)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCHHH-----HHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCHHH-----HHHH
Confidence 35567778999999999999999999999 8887
No 278
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.32 E-value=3.3e-07 Score=84.21 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++.+-.|+|++.++|+++++|||++. +|.++.+.+.+.++++..
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSa-----LD~~tE~~Iq~~l~~~~~ 1265 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSA-----LDTESEKVVQEALDRARE 1265 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCS-----TTSHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCcccc-----CCHHHHHHHHHHHHHHcC
Confidence 4467778999999999999999999999 999999999888887643
No 279
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.31 E-value=9.8e-07 Score=75.90 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=44.0
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCC--CccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPN--LHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~--~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
++.++ |-++....|++++..+|+ ++++|||+++ +|+.....+.+.++++..+.
T Consensus 200 ~~~LS--GGe~QRv~iArAL~~~p~~~lLlLDEPtsg-----LD~~~~~~l~~~l~~l~~~g 254 (670)
T 3ux8_A 200 AGTLS--GGEAQRIRLATQIGSRLTGVLYVLDEPSIG-----LHQRDNDRLIATLKSMRDLG 254 (670)
T ss_dssp GGGSC--HHHHHHHHHHHHHHTCCCSCEEEEECTTTT-----CCGGGHHHHHHHHHHHHHTT
T ss_pred cccCC--HHHHHHHHHHHHHhhCCCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHcC
Confidence 34444 555666889999999988 9999999999 99999999999999886543
No 280
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.28 E-value=4.2e-07 Score=83.53 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++.+..|+|++..+|+++++|||++. +|.+..+...+.+.++..
T Consensus 557 GGQkQRiaiARAl~~~~~IliLDE~tSa-----LD~~te~~i~~~l~~~~~ 602 (1321)
T 4f4c_A 557 GGQKQRIAIARALVRNPKILLLDEATSA-----LDAESEGIVQQALDKAAK 602 (1321)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCCEEEEeccccc-----CCHHHHHHHHHHHHHHhC
Confidence 5578889999999999999999999999 999988888888877643
No 281
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.24 E-value=2.2e-06 Score=69.54 Aligned_cols=91 Identities=12% Similarity=0.040 Sum_probs=54.1
Q ss_pred EEEEEEEeCCCccc--ccc-cc---ccc--ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc
Q 027593 61 KIRFYCWDTAGQEK--FGG-LR---DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (221)
Q Consensus 61 ~~~~~~~D~~g~~~--~~~-~~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~ 132 (221)
...+.++||||... ... .. ... ....+.+++|+|+..... .......+... ..+..+++||.|...+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhcc--cCCcEEEEeccccccc
Confidence 46788999999543 111 11 111 124588999999886532 22333444332 3567899999998643
Q ss_pred cccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593 133 QVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i 160 (221)
. -.........+.|+.+++. |+++
T Consensus 254 ~--G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 254 G--GGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp H--HHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred c--hHHHHHHHHHCCCEEEEEC--CCCh
Confidence 2 2234445556888888775 5554
No 282
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.24 E-value=1e-06 Score=71.63 Aligned_cols=86 Identities=16% Similarity=0.053 Sum_probs=49.4
Q ss_pred eEEEEEEEeCCCcccccc-cc-----cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCC-C-EEEEEeCCCCCc
Q 027593 60 GKIRFYCWDTAGQEKFGG-LR-----DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-P-IVLCGNKVDVKN 131 (221)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p-~i~v~nk~D~~~ 131 (221)
....+.++||||...... .. ...+..++.+++|+|+.... +.......+ .... | ..+|+||+|...
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~---~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF---KEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH---HTTSCSCEEEEEECSSSCS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH---hhcccCCeEEEEeCCCCcc
Confidence 346789999999653211 10 01123679999999987552 222222222 2345 6 789999999854
Q ss_pred ccccHHHHHHHHhcCceEEEee
Q 027593 132 RQVKAKQVTFHRKKNLQYYEIS 153 (221)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~s 153 (221)
.. ..........+.++.+++
T Consensus 253 ~~--g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 253 KG--GGALSAVAETKAPIKFIG 272 (432)
T ss_dssp TT--HHHHHHHHHSSCCEEEEC
T ss_pred ch--HHHHHHHHHHCCCEEEee
Confidence 22 223345555666766654
No 283
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.17 E-value=1.3e-06 Score=80.16 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++.+..|++++..+|+++++|||+++ +|....+...+.+++...
T Consensus 1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~-----lD~~~~~~i~~~l~~~~~ 1219 (1284)
T 3g5u_A 1174 GGQKQRIAIARALVRQPHILLLDEATSA-----LDTESEKVVQEALDKARE 1219 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEESCSSS-----CCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHhCC
Confidence 4566778899999999999999999999 999999999999887643
No 284
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.15 E-value=2.6e-06 Score=65.93 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=53.6
Q ss_pred EEEEEEEeCCCccc--ccc-ccc-----ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCc
Q 027593 61 KIRFYCWDTAGQEK--FGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN 131 (221)
Q Consensus 61 ~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~ 131 (221)
...+.++||||... ... ... .....++.+++|+|+... .+.......+.. ..+ ..+++||+|...
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCCc
Confidence 45789999999765 211 111 123468899999998643 222222223322 456 678999999754
Q ss_pred ccccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 161 (221)
+. ..........+.++.+++ .|++++
T Consensus 254 ~~--g~~~~~~~~~~~pi~~i~--~Ge~v~ 279 (297)
T 1j8m_F 254 KG--GGALSAVAATGATIKFIG--TGEKID 279 (297)
T ss_dssp TH--HHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred ch--HHHHHHHHHHCcCEEEEe--CCCChh
Confidence 22 223455566678877766 455554
No 285
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.15 E-value=5.2e-06 Score=65.07 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=50.2
Q ss_pred EEEEEEeCCCcccccccc-ccc-----ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc
Q 027593 62 IRFYCWDTAGQEKFGGLR-DGY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (221)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~-~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~ 135 (221)
..+.++|++|........ ... .-..+-.+++.|+... .++......+... .....+++||.|...+ .
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~--~~it~iilTKlD~~a~--~ 284 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEA--VKIDGIILTKLDADAR--G 284 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHH--SCCCEEEEECGGGCSC--C
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHh--cCCCEEEEeCcCCccc--h
Confidence 345678999964322211 111 1246788889997655 2333333333322 2345788999997432 2
Q ss_pred HHHHHHHHhcCceEEEeecCCCCCh
Q 027593 136 AKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 136 ~~~~~~~~~~~~~~~~~s~~~~~~i 160 (221)
-.........+.++.+++ +|+++
T Consensus 285 G~~l~~~~~~~~pi~~i~--~Ge~v 307 (328)
T 3e70_C 285 GAALSISYVIDAPILFVG--VGQGY 307 (328)
T ss_dssp HHHHHHHHHHTCCEEEEE--CSSST
T ss_pred hHHHHHHHHHCCCEEEEe--CCCCc
Confidence 334455666678887776 45554
No 286
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.12 E-value=3.9e-07 Score=83.48 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|.++.+..|++++..+|+++++|||+++ +|.+..+...+.++.+..
T Consensus 529 gGq~QriaiARal~~~p~iliLDEpts~-----LD~~~~~~i~~~l~~~~~ 574 (1284)
T 3g5u_A 529 GGQKQRIAIARALVRNPKILLLDEATSA-----LDTESEAVVQAALDKARE 574 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTCS-----SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHcC
Confidence 5577779999999999999999999999 999998888888876543
No 287
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.11 E-value=4.8e-06 Score=70.74 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~ 38 (221)
.|+|+|++|||||||++.+. |..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~-Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALS-GVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHH-SCC
T ss_pred eEEEECCCCChHHHHHHHHh-CCC
Confidence 49999999999999999854 443
No 288
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.06 E-value=1.2e-05 Score=71.21 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHH
Q 027593 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAA 206 (221)
Q Consensus 159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~ 206 (221)
|.++....|++++..+|+++++|||+++ +|+...+.+.+.+++
T Consensus 551 GGqkQRvaLArAL~~~P~lLLLDEPTs~-----LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 551 GGWKMKLALARAVLRNADILLLDEPTNH-----LDTVNVAWLVNYLNT 593 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESTTTT-----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHHHHHHHHHh
Confidence 5556668899999999999999999999 999999999999887
No 289
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.93 E-value=5.7e-06 Score=62.86 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=61.5
Q ss_pred CCCccc-ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc
Q 027593 69 TAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (221)
Q Consensus 69 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~ 147 (221)
.||+.. ........+.++|+++.|+|+.++.+..+... . + . ++|.++|+||+|+.+..............+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l--~-l---l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~ 76 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV--D-F---S-RKETIILLNKVDIADEKTTKKWVEFFKKQGK 76 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS--C-C---T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH--H-h---c-CCCcEEEEECccCCCHHHHHHHHHHHHHcCC
Confidence 355432 22344556889999999999999877754211 1 1 1 7899999999999764333333444555677
Q ss_pred eEEEeecCCCCChHHHHHHHHH
Q 027593 148 QYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 148 ~~~~~s~~~~~~i~~~~~~l~~ 169 (221)
++ .+|+.++.|+++++..+..
T Consensus 77 ~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 77 RV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp CE-EECCTTSCHHHHHHHHCCC
T ss_pred eE-EEECCCCcCHHHHHHHHHH
Confidence 77 9999999999887665533
No 290
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.91 E-value=3.3e-07 Score=75.53 Aligned_cols=101 Identities=16% Similarity=-0.020 Sum_probs=53.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc--ccccc--------c
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLR--------D 80 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~--------~ 80 (221)
.....|+++|.+||||||+.++|..... ....++.+...........+......+||..|... ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999998543211 11111111110000000111123345778887632 22222 3
Q ss_pred ccccCccEEEEEEeCCChhhhccHHHHHHHHHh
Q 027593 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 113 (221)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 113 (221)
.++....+.++|+|.++. .+.....|......
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 445556777889998877 44444555554443
No 291
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.90 E-value=0.00027 Score=56.22 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHh------CCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593 159 NFEKPFLYLARKLA------GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 ~i~~~~~~l~~~l~------~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
|.+.....|++++. .+|+++++|||+++ +|+.......+.++++..+
T Consensus 282 gGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~-----LD~~~~~~~~~~l~~l~~~ 334 (365)
T 3qf7_A 282 GGERALISISLAMSLAEVASGRLDAFFIDEGFSS-----LDTENKEKIASVLKELERL 334 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTT-----SCHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhC
Confidence 44555677888887 79999999999999 9999999999999987654
No 292
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.88 E-value=7e-06 Score=58.65 Aligned_cols=43 Identities=5% Similarity=0.029 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHH-----HhCCCCCccccC--CCCCCcccccchHHHHHHHHHHHH
Q 027593 159 NFEKPFLYLARK-----LAGDPNLHFVES--PALAPPEVQIDLAAQQQHEAELAA 206 (221)
Q Consensus 159 ~i~~~~~~l~~~-----l~~~~~~~~~~e--p~~~~~~~~~~~~~~~~~~~~~~~ 206 (221)
+.+.....|+++ +..+|+++++|| |+.+ +|+...+.+.+.+++
T Consensus 79 gG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~-----ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 79 YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL-----FSKKFRDLVRQIMHD 128 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG-----GCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhccccccccCCCEEEEeCCCCccc-----CCHHHHHHHHHHHhc
Confidence 344556677775 788888888899 8888 777777776666654
No 293
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.74 E-value=1.4e-05 Score=58.11 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
-.++|+|++|||||||++.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999854
No 294
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.72 E-value=1.4e-05 Score=61.95 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.++|+|++|||||||+|.+.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHhc
Confidence 3589999999999999999854
No 295
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.70 E-value=1.8e-05 Score=57.81 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
=.++|+|++|||||||++.+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999844
No 296
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.69 E-value=4.2e-05 Score=59.31 Aligned_cols=82 Identities=15% Similarity=0.117 Sum_probs=54.0
Q ss_pred ccccccccCccEEEEEEeCCChhhhcc-HHHHHHHHHhhcCCCCEEEEEeCCCCCcccc----cHHHHHHHHhcCceEEE
Q 027593 77 GLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYE 151 (221)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~----~~~~~~~~~~~~~~~~~ 151 (221)
.+.+..+.++|.+++|+|+.++....+ +..++.... ..++|.++|+||+|+.+... ...........+.+.+.
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~--~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE--ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH--TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 344456789999999999997654433 223332222 24789999999999976532 22333444456778888
Q ss_pred eecCCCCCh
Q 027593 152 ISAKSNYNF 160 (221)
Q Consensus 152 ~s~~~~~~i 160 (221)
+|+.++.|+
T Consensus 156 ~sa~~~~g~ 164 (307)
T 1t9h_A 156 TSSKDQDSL 164 (307)
T ss_dssp CCHHHHTTC
T ss_pred EecCCCCCH
Confidence 888877665
No 297
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.68 E-value=3.9e-05 Score=60.71 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~ 35 (221)
-.++|+|++|||||||+|.+++
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 3689999999999999998553
No 298
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.68 E-value=2e-05 Score=56.54 Aligned_cols=19 Identities=47% Similarity=0.845 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 027593 16 LVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 16 i~v~G~~g~GKStli~~~~ 34 (221)
++|+|++|||||||++.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEESSSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999855
No 299
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.66 E-value=3.1e-05 Score=55.31 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~ 35 (221)
.-.++|+|++|||||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999998553
No 300
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.66 E-value=2.3e-05 Score=56.96 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
--++|+|++|||||||++.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~ 28 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALV 28 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHH
Confidence 468999999999999999854
No 301
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.64 E-value=2.6e-05 Score=54.54 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~ 35 (221)
=.++++|++|||||||++.+.+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998553
No 302
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.63 E-value=9.2e-06 Score=58.36 Aligned_cols=20 Identities=45% Similarity=0.813 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 027593 16 LVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 16 i~v~G~~g~GKStli~~~~~ 35 (221)
|+|+||+|||||||+++++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999664
No 303
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.63 E-value=2.6e-05 Score=57.55 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~ 35 (221)
.--++|+|++|||||||++.+.+
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998543
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.62 E-value=1.5e-05 Score=57.74 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=21.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~ 35 (221)
.++.-.|+|+|++|||||||++.++.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHh
Confidence 34455789999999999999998653
No 305
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.62 E-value=5.6e-05 Score=61.53 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~ 35 (221)
..+..-|+|+|++++|||||+|++++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 55677899999999999999999764
No 306
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.61 E-value=2.9e-05 Score=57.31 Aligned_cols=21 Identities=48% Similarity=0.843 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
-.++|+|++|||||||++.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~ 44 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLL 44 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999854
No 307
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.61 E-value=0.00024 Score=57.78 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=45.6
Q ss_pred EEEEEEEeCCCcccccc-ccc-----ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCccc
Q 027593 61 KIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ 133 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~ 133 (221)
++.+.++||||...... ... ......+.+++|+|+.... +.......+.. ..+ .-+++||+|.....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~---~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNE---ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHH---HSCCCCEEEECTTSSSCC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhc---cCCCeEEEEecCCCCccH
Confidence 46789999999643321 111 1133678899999987542 22222333322 344 34689999986432
Q ss_pred ccHHHHHHHHhcCceEEEe
Q 027593 134 VKAKQVTFHRKKNLQYYEI 152 (221)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~ 152 (221)
..........+.+..++
T Consensus 257 --g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 257 --GAALSIRHITGKPIKFL 273 (433)
T ss_dssp --THHHHHHHHHCCCEEEE
T ss_pred --HHHHHHHHHHCCCeEEE
Confidence 12233444445554443
No 308
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.59 E-value=3.9e-05 Score=56.07 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.+...|+|+|++|||||||++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999743
No 309
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.59 E-value=4.5e-05 Score=54.75 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.|+|+|++|||||||++.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999844
No 310
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.59 E-value=0.00014 Score=56.27 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.++++|++|||||||+|.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999965
No 311
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.56 E-value=0.00037 Score=55.12 Aligned_cols=81 Identities=9% Similarity=0.011 Sum_probs=51.9
Q ss_pred cccCccEEEEEEeCCChhhhc-cHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc---cHHHHHHHHhcCceEEEeecCCC
Q 027593 82 YYIHGQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~ 157 (221)
...++|.+++|... ++.... .+..++..... .++|.++|+||+|+.+... ...........+.+.+.+|+.++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 46788999887554 443222 22233322222 2788899999999976432 11233444566889999999999
Q ss_pred CChHHHHH
Q 027593 158 YNFEKPFL 165 (221)
Q Consensus 158 ~~i~~~~~ 165 (221)
.|++++..
T Consensus 204 ~gl~~L~~ 211 (358)
T 2rcn_A 204 DGLKPLEE 211 (358)
T ss_dssp BTHHHHHH
T ss_pred cCHHHHHH
Confidence 99877653
No 312
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.53 E-value=3.5e-05 Score=56.43 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHh
Q 027593 164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA 207 (221)
Q Consensus 164 ~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~ 207 (221)
...|++++..+|+++++|||+++ ......+.++++
T Consensus 112 rv~lAraL~~~p~lllLDEPts~---------~~~~l~~~l~~l 146 (208)
T 3b85_A 112 PLAYMRGRTLNDAFVILDEAQNT---------TPAQMKMFLTRL 146 (208)
T ss_dssp EGGGGTTCCBCSEEEEECSGGGC---------CHHHHHHHHTTB
T ss_pred HHHHHHHHhcCCCEEEEeCCccc---------cHHHHHHHHHHh
Confidence 36789999999999999999988 444455555544
No 313
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.49 E-value=5.1e-05 Score=54.67 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
+++++|++|+|||||++.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 58999999999999999844
No 314
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.49 E-value=6.2e-05 Score=54.98 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+...|+|+|++|||||||++.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~ 27 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALA 27 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999743
No 315
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.48 E-value=6e-05 Score=55.09 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~ 35 (221)
.--|+|+|++|||||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 34689999999999999998553
No 316
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.44 E-value=7.3e-05 Score=53.64 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.++|+|++|||||||++.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57999999999999999854
No 317
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.42 E-value=8.2e-05 Score=55.80 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
-.|+|+|++|||||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999844
No 318
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.42 E-value=7.5e-05 Score=55.87 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
=-++|+|++|||||||++.++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 358999999999999999865
No 319
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.42 E-value=0.00012 Score=57.01 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
..+...|+|+|++|||||||++.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHH
Confidence 4556789999999999999999743
No 320
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.41 E-value=8.2e-05 Score=52.46 Aligned_cols=20 Identities=30% Similarity=0.503 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 027593 14 FKLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~ 33 (221)
..|+|+|++||||||+.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 36999999999999999974
No 321
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.40 E-value=8.3e-05 Score=56.38 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.=.++|+|++|||||||++.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHH
Confidence 3469999999999999999854
No 322
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.40 E-value=8.2e-05 Score=57.58 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
=.++|+|++|||||||++.+.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 479999999999999999744
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.40 E-value=0.00011 Score=53.43 Aligned_cols=21 Identities=38% Similarity=0.601 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
-.|+|+|++||||||+++.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999854
No 324
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.37 E-value=9.5e-05 Score=53.62 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.|+|+|++|||||||++.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999743
No 325
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.37 E-value=0.00014 Score=51.42 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+.-.|+|+|++||||||+++.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34579999999999999999743
No 326
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.34 E-value=6.4e-05 Score=55.83 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=14.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
-.++|+|++|||||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999855
No 327
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.32 E-value=0.0001 Score=54.41 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~ 35 (221)
=-++|+|++|||||||++.+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998654
No 328
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.32 E-value=0.00014 Score=54.45 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.+...|+|+|++|||||||++.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~ 46 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIM 46 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999754
No 329
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.31 E-value=0.00013 Score=53.11 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
...|+|+|++|||||||++.+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999854
No 330
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.30 E-value=0.00015 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
...|+|.|++||||||+.+.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999843
No 331
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.28 E-value=0.00016 Score=50.89 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 027593 14 FKLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~ 33 (221)
.-|+|+|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999985
No 332
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.28 E-value=0.00014 Score=52.74 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
.+|+|+|++||||||+.+.+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 379999999999999999854
No 333
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.27 E-value=0.00015 Score=53.41 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..|+|+|++||||||+.+.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999743
No 334
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.27 E-value=0.00013 Score=51.96 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.++++|++|+|||||++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999854
No 335
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.27 E-value=0.00017 Score=52.48 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
+.|+|+|++||||||+.+.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999753
No 336
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.26 E-value=0.0024 Score=49.42 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.|+++|++|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 4568999999999999999843
No 337
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.26 E-value=0.00018 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+...|+|+|.+||||||+.+.+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999753
No 338
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.26 E-value=0.00013 Score=58.00 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCCC
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHLTGEF 38 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~~~~~ 38 (221)
.-+++|+|++|||||||++. +.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~-L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNK-LAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHH-HHHHT
T ss_pred hCeEEEECCCCCCHHHHHHH-HHHHh
Confidence 46899999999999999997 44444
No 339
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.25 E-value=0.00017 Score=50.69 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.|+|+|++||||||+.+.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999853
No 340
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.23 E-value=0.00022 Score=55.21 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEF 38 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~ 38 (221)
-.++++|++|||||||+|. +.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~-l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNA-INPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHH-HSTTC
T ss_pred CeEEEECCCCCcHHHHHHH-hcccc
Confidence 4689999999999999998 44433
No 341
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.22 E-value=9.7e-05 Score=52.29 Aligned_cols=20 Identities=45% Similarity=0.718 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.|+|+|++|||||||++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999844
No 342
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.22 E-value=0.00025 Score=55.34 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHH
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~ 33 (221)
....+-|+|+|++|||||||++.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
Confidence 345678999999999999999974
No 343
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.21 E-value=0.00023 Score=50.77 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
...|+++|++||||||+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999854
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.21 E-value=0.00025 Score=51.37 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=21.5
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHh
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.......|+|+|++||||||+.+.+.
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34555789999999999999999753
No 345
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.21 E-value=0.00021 Score=51.68 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
-.|+|+|++||||||+.+.+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999844
No 346
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.21 E-value=0.00025 Score=51.37 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.+.-.|+|+|++||||||+.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999743
No 347
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.20 E-value=0.00025 Score=51.61 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+...|+|.|++||||||+.+.+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 44689999999999999999843
No 348
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.20 E-value=0.00019 Score=50.74 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..|+|+|++||||||+.+.+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 468999999999999999855
No 349
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.19 E-value=0.00019 Score=51.98 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..|+|+|++||||||+.+.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999853
No 350
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.18 E-value=0.00026 Score=50.05 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..|.|+|++||||||+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999844
No 351
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.18 E-value=0.00019 Score=56.93 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.|+|+|++|||||||++.++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999855
No 352
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.17 E-value=0.0002 Score=55.51 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+.--++++|++||||||+++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34579999999999999999843
No 353
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.17 E-value=0.00023 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~ 35 (221)
.-++|+|++|||||||+++++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999663
No 354
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.16 E-value=0.00035 Score=50.67 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.+...|+|+|++|||||||++.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999744
No 355
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.16 E-value=0.0003 Score=50.23 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+...|+|+|++||||||+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999753
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.16 E-value=0.00026 Score=54.96 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.+...|+|+|++|||||||++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999744
No 357
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.15 E-value=0.00021 Score=55.43 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.|+++|++|||||||++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4579999999999999999844
No 358
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.15 E-value=0.00024 Score=51.99 Aligned_cols=20 Identities=30% Similarity=0.528 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999853
No 359
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.15 E-value=0.00027 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+...|+|+|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999743
No 360
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.13 E-value=0.00026 Score=51.83 Aligned_cols=20 Identities=40% Similarity=0.528 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999853
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.12 E-value=0.00029 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+...|+|+|++||||||+.+.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999743
No 362
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.11 E-value=0.00023 Score=55.88 Aligned_cols=23 Identities=30% Similarity=0.681 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~~~ 38 (221)
.++|+|++|||||||++. +.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~-l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKS-IMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHH-GGGGS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCC
Confidence 689999999999999997 44443
No 363
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.11 E-value=0.00042 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=22.4
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHh
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+..++...|+|+|.+||||||+++.+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 345567889999999999999999743
No 364
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.11 E-value=0.00025 Score=50.42 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~ 35 (221)
-.+|+|++|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998543
No 365
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.09 E-value=0.00035 Score=50.77 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
...|+|+|++||||||+++.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999743
No 366
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.09 E-value=0.00035 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.648 Sum_probs=20.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHH
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~ 33 (221)
..+..-|+|.|++||||||+++.+
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHH
Confidence 355678999999999999999973
No 367
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.08 E-value=0.00025 Score=56.31 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
-.++|+|++|||||||++.++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999844
No 368
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.07 E-value=0.00034 Score=50.55 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.|+|.|++||||||+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 58999999999999999743
No 369
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.06 E-value=0.00037 Score=52.44 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=20.2
Q ss_pred CccCCceEEEEEcCCCCcHHHHHHHHh
Q 027593 8 TVDYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
....+.+.|+|.|++||||||+.+.|.
T Consensus 17 ~~~~~~~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 17 PNGGEPFLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHH
Confidence 334456789999999999999999743
No 370
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.06 E-value=0.00046 Score=53.10 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
..+...|+|+|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456889999999999999999743
No 371
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.06 E-value=0.00039 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
...|+|+|++||||||+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999853
No 372
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.05 E-value=0.0003 Score=53.72 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 027593 16 LVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 16 i~v~G~~g~GKStli~~~~ 34 (221)
++++|++|+|||||++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp EEEESSTTSCHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 9999999999999999854
No 373
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.05 E-value=0.00031 Score=56.07 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.=.|+|+|++|||||||++.++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999854
No 374
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.05 E-value=0.00033 Score=50.07 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.|+|.|++||||||+.+.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999843
No 375
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.05 E-value=0.00023 Score=49.18 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.++++|++|+|||||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999854
No 376
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.04 E-value=0.00029 Score=56.97 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~ 35 (221)
.|+|+|++|||||||++.++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998553
No 377
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.04 E-value=0.00019 Score=51.99 Aligned_cols=85 Identities=7% Similarity=-0.043 Sum_probs=52.5
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhh---cCCCCEEEEEeCCCCCcccccHH
Q 027593 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAK 137 (221)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~i~v~nk~D~~~~~~~~~ 137 (221)
.+.+.++|+|+.. .......+..+|.++++...+... ..+......+... .+..++.+|+|+++.... ...+
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~ 149 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNV 149 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHH
Confidence 3678899999865 233345567789999998876543 4555555555443 235677899999996433 2233
Q ss_pred HHHHHHhcCceEE
Q 027593 138 QVTFHRKKNLQYY 150 (221)
Q Consensus 138 ~~~~~~~~~~~~~ 150 (221)
..+.....+.+++
T Consensus 150 ~~~~l~~~~~~vl 162 (206)
T 4dzz_A 150 LKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHTCCBC
T ss_pred HHHHHHHcCCcee
Confidence 3344444555443
No 378
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.03 E-value=0.00047 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+..+|+|+|++||||||+.+.|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999999854
No 379
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.02 E-value=0.00059 Score=49.36 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
....|+|+|++||||||+.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999998754
No 380
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.02 E-value=0.00033 Score=55.46 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+.-.|+++|++||||||+++.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 44579999999999999999843
No 381
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.00028 Score=57.86 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLTGEF 38 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~~~~ 38 (221)
-.++|+|++|||||||++. +.|..
T Consensus 139 e~v~IvGpnGsGKSTLlr~-L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRT-LCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHH-HHHTT
T ss_pred CEEEEECCCCCCHHHHHHH-HhCcc
Confidence 4699999999999999997 44443
No 382
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.01 E-value=0.00046 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.+...|+|+|++||||||+.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999754
No 383
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.00 E-value=0.00036 Score=55.11 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~ 35 (221)
=+++|+|++|+|||||++.+.+
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999998553
No 384
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.00 E-value=0.00042 Score=49.34 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..|+++|++||||||+.+.+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999853
No 385
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.00 E-value=0.00048 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
...|+|.|++||||||+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 3579999999999999999844
No 386
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.99 E-value=0.00041 Score=49.20 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
....|+++|++||||||+.+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34579999999999999999843
No 387
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.98 E-value=0.00038 Score=49.18 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
+|+|+|++||||||+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 59999999999999999743
No 388
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.98 E-value=0.00048 Score=49.42 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
...|+|+|++||||||+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999743
No 389
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.96 E-value=0.00057 Score=52.52 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.+...-|+|+|++||||||+.+.+.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3445789999999999999999864
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.96 E-value=0.00056 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=19.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
++...|+|+|++||||||+.+.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999743
No 391
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.96 E-value=0.00039 Score=57.18 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+.-.|+|+|++|||||||++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHH
Confidence 45679999999999999999854
No 392
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.96 E-value=0.00042 Score=52.10 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 027593 16 LVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 16 i~v~G~~g~GKStli~~~~ 34 (221)
++++|++|+|||||++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999999854
No 393
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.96 E-value=0.00044 Score=50.95 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
-++|+|++|+|||||++.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58899999999999999865
No 394
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.96 E-value=0.0005 Score=47.43 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
-.+|+|++|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999865
No 395
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.94 E-value=0.00046 Score=50.50 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
+|+|+|++||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999854
No 396
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.94 E-value=0.00041 Score=57.66 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
-.++|+|++|||||||++.++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999854
No 397
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.94 E-value=0.00052 Score=50.98 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
..+.|+|.|++||||||+.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999743
No 398
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.92 E-value=0.00053 Score=49.88 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+...|+|.|.+||||||+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 34689999999999999999743
No 399
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.91 E-value=0.00046 Score=56.75 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
=.++|+|++|||||||++.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999854
No 400
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.90 E-value=0.00066 Score=47.80 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..++|+|++|||||||+.+++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999865
No 401
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.90 E-value=0.00061 Score=47.65 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
+|+|.|.+||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999743
No 402
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.90 E-value=0.00083 Score=49.01 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=51.8
Q ss_pred EEEEEEEeCCCc-ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHH
Q 027593 61 KIRFYCWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQ 138 (221)
Q Consensus 61 ~~~~~~~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~ 138 (221)
.+.+.++|+|+. .. ......+..+|.++++...+ ..+...+......+.... +.++.+++|+++... .. ..+.
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~-~~~~ 141 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKD-GDEA 141 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCH-HHHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchH-HHHH
Confidence 467889999886 32 22344567889998888765 445555555555555422 566889999998764 22 2233
Q ss_pred HHHHHhcCceEE
Q 027593 139 VTFHRKKNLQYY 150 (221)
Q Consensus 139 ~~~~~~~~~~~~ 150 (221)
.+.....+.+++
T Consensus 142 ~~~l~~~g~~v~ 153 (209)
T 3cwq_A 142 RQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHTTCCBC
T ss_pred HHHHHHcCCchh
Confidence 333344555543
No 403
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.90 E-value=0.00059 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
...|+|.|.+||||||+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999844
No 404
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.88 E-value=0.00064 Score=49.58 Aligned_cols=20 Identities=45% Similarity=0.552 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.|+|+|+|||||+|...++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999854
No 405
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.87 E-value=0.00038 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.164 Sum_probs=15.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+...|+|.|.+||||||+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999853
No 406
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.87 E-value=0.00071 Score=49.56 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.+.|+|.|++||||||+.+.+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999753
No 407
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.86 E-value=0.00057 Score=51.48 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
-|+|+|++|||||||.+.+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 48999999999999999853
No 408
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.86 E-value=0.00061 Score=50.30 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..|+|+|++||||||+.+.+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999854
No 409
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.85 E-value=0.00042 Score=54.05 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027593 15 KLVIVGDGGTGKTTFVKRHLTG 36 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~~ 36 (221)
-++|+|++|||||||++.++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 5789999999999999997643
No 410
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.85 E-value=0.00056 Score=53.72 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
-.++++|++|+|||||++.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 358999999999999999844
No 411
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.84 E-value=0.00062 Score=48.86 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
-|+|.|++||||||+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999854
No 412
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.84 E-value=0.0006 Score=52.02 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 027593 16 LVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 16 i~v~G~~g~GKStli~~~~ 34 (221)
|+|+|++|+|||||++.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHH
Confidence 9999999999999999854
No 413
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.83 E-value=0.00071 Score=49.89 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.|+|.|++||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999753
No 414
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.82 E-value=0.00058 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=20.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
......|+++|++||||||+.+.+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHH
Confidence 3445789999999999999999853
No 415
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.82 E-value=0.00028 Score=51.49 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
-|+|.|++||||||+++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999843
No 416
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.80 E-value=0.0006 Score=52.47 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~ 35 (221)
-++|+|++|+|||||++.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999998553
No 417
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.79 E-value=0.00078 Score=48.16 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.|+|.|.+||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999753
No 418
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.78 E-value=0.00077 Score=48.45 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..|+|+|++||||||+.+.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999743
No 419
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.78 E-value=0.00069 Score=55.21 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
=+++|+|++|||||||++.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Ia 178 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMA 178 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 378999999999999999754
No 420
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.76 E-value=0.0031 Score=51.24 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=39.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc------C------------CCC---CcccCCceeEeee--EEEEe-cCeEEEEE
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHLT------G------------EFE---KKYEPTIGVEVHP--LDFFT-NCGKIRFY 65 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~~------~------------~~~---~~~~~~~~~~~~~--~~~~~-~~~~~~~~ 65 (221)
..+-.=|+|+|+.++|||+|+|.++. + .|. .....|.|+-.-. ..... ++..+.+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 45677788999999999999996441 1 111 0111233332221 11222 45678999
Q ss_pred EEeCCCccc
Q 027593 66 CWDTAGQEK 74 (221)
Q Consensus 66 ~~D~~g~~~ 74 (221)
++||.|...
T Consensus 144 llDTEG~~d 152 (457)
T 4ido_A 144 LMDTQGTFD 152 (457)
T ss_dssp EEEECCBTC
T ss_pred EEeccCCCC
Confidence 999999553
No 421
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.76 E-value=0.00092 Score=47.38 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.++|.|++|+|||+|++.+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999854
No 422
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.76 E-value=0.00081 Score=47.18 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.|+|.|++||||||+.+.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999743
No 423
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.74 E-value=0.00085 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~ 35 (221)
--++|+|++|+|||||+..+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998664
No 424
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.74 E-value=0.00083 Score=47.74 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.|+|+|++||||||+.+.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999999998743
No 425
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.74 E-value=0.0011 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.+.+.|+|.|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999753
No 426
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.72 E-value=0.00088 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~ 35 (221)
--++++|++|+|||||+..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998664
No 427
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.72 E-value=0.00079 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..|+|+|++||||||+.+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999743
No 428
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.71 E-value=0.00079 Score=50.60 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 027593 13 SFKLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~ 33 (221)
.-.|+|+|++||||||+.+.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 347999999999999999974
No 429
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.71 E-value=0.0012 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..|+|+|++||||||+.+.+.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999753
No 430
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.70 E-value=0.00093 Score=48.98 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..|+|+|++||||||+.+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999743
No 431
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.70 E-value=0.0011 Score=47.76 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.+.|+|+|.+||||||+.+.|.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHH
Confidence 346889999999999999999743
No 432
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.69 E-value=0.0009 Score=50.57 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..|+|+|.+||||||+.+.+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999854
No 433
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.68 E-value=0.0011 Score=46.34 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 027593 15 KLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~ 33 (221)
.|+|.|.+||||||+.+.+
T Consensus 9 ~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6899999999999999974
No 434
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.66 E-value=0.0011 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=18.4
Q ss_pred CCceE-EEEEcCCCCcHHHHHHHHh
Q 027593 11 YPSFK-LVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~-i~v~G~~g~GKStli~~~~ 34 (221)
.++.| |.|+|+|||||+|....+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 34445 4678999999999998754
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.64 E-value=0.0013 Score=48.77 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..|+|+|++||||||+.+.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999743
No 436
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.63 E-value=0.0013 Score=47.54 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 027593 15 KLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~ 33 (221)
.|+|.|++||||||+.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7999999999999999974
No 437
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.62 E-value=0.0011 Score=49.84 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
-.|+++|++|+|||||++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 469999999999999999854
No 438
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.61 E-value=0.00088 Score=59.55 Aligned_cols=49 Identities=22% Similarity=0.150 Sum_probs=40.5
Q ss_pred eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHh
Q 027593 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA 207 (221)
Q Consensus 152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~ 207 (221)
++.++ |.++.+..|++++..+|+++++|||+.+ +|......+.+.+++.
T Consensus 899 ~~~LS--GGQkQRVaLArAL~~~P~LLLLDEPT~g-----LD~~s~~~L~~~L~~~ 947 (986)
T 2iw3_A 899 IRGLS--GGQKVKLVLAAGTWQRPHLIVLDEPTNY-----LDRDSLGALSKALKEF 947 (986)
T ss_dssp GGGCC--HHHHHHHHHHHHHTTCCSEEEEECGGGT-----CCHHHHHHHHHHHHSC
T ss_pred ccccC--HHHHHHHHHHHHHHhCCCEEEEECCccC-----CCHHHHHHHHHHHHHh
Confidence 34455 4456668899999999999999999999 9999999888888754
No 439
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.60 E-value=0.0017 Score=48.13 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+..-|+|.|++||||||+++.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 45679999999999999999844
No 440
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.59 E-value=0.0016 Score=47.47 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHH
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~ 33 (221)
+...|+|+|++||||||+.+.+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3467999999999999999974
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.58 E-value=0.0011 Score=50.50 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~ 35 (221)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999998664
No 442
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.55 E-value=0.0014 Score=48.32 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.++|.|++|+|||||++.+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999854
No 443
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.54 E-value=0.0012 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.++++|++|+|||||++.+.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999854
No 444
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.54 E-value=0.0002 Score=53.07 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 027593 16 LVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 16 i~v~G~~g~GKStli~~~~ 34 (221)
++|+|++|||||||++.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~ 48 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFV 48 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4789999999999999854
No 445
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.54 E-value=0.0011 Score=46.82 Aligned_cols=22 Identities=32% Similarity=0.515 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.++|.|++|+|||+|++.+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999854
No 446
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.54 E-value=0.0015 Score=47.50 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
-.+|+|++|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999854
No 447
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.52 E-value=0.0017 Score=48.22 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=20.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
..+...|+|+|++||||||+.+.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 4456789999999999999999744
No 448
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.52 E-value=0.0016 Score=46.92 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
-.+++.|++|+|||+|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999854
No 449
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.47 E-value=0.0013 Score=54.85 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 027593 15 KLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~ 33 (221)
.++|+|++|||||||++.|
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5899999999999999985
No 450
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.46 E-value=0.0014 Score=50.52 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.|+++|++|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999843
No 451
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.43 E-value=0.0016 Score=47.58 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+.+.|+|+|++||||||+.+.+.
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999998743
No 452
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.42 E-value=0.0021 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
-..+++|+|++||||||+.+.+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 45789999999999999999754
No 453
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.40 E-value=0.0017 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~ 35 (221)
=-++|+|++|+|||||++.+..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998654
No 454
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.37 E-value=0.0019 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027593 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~~ 35 (221)
..|+|+|++||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998653
No 455
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.37 E-value=0.0021 Score=43.87 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
....|++.|++|+|||++.+.+-
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999843
No 456
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.35 E-value=0.002 Score=50.65 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 164 ~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
...+++++..+|+++++|||+.+ +|+.......+.++++..
T Consensus 262 ~l~~a~~l~~~p~~lllDEp~~~-----LD~~~~~~l~~~l~~~~~ 302 (339)
T 3qkt_A 262 RLAMSLYLAGEISLLILDEPTPY-----LDEERRRKLITIMERYLK 302 (339)
T ss_dssp HHHHHHHTTTTTCEEEEECCCTT-----CCHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHhcCCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHh
Confidence 45677888889999999999999 999999999999887644
No 457
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.34 E-value=0.002 Score=47.81 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027593 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~~ 35 (221)
-++|+|++|+|||||+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999877654
No 458
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.31 E-value=0.0019 Score=46.81 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.+++.||+|+||||++.++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999988744
No 459
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.29 E-value=0.0024 Score=49.05 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+.-.+++.|++|+|||++++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHH
Confidence 35689999999999999999854
No 460
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.28 E-value=0.00073 Score=54.57 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 027593 15 KLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~ 33 (221)
.++|+|++|+|||||++.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI 80 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDAL 80 (415)
T ss_dssp EEEEEESHHHHHHHHTHHH
T ss_pred cEEEECCCCCCHHHHHHHH
No 461
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.28 E-value=0.0024 Score=46.92 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.++|.|++|+|||||++.+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999854
No 462
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.26 E-value=0.0023 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.|++.|++|+|||+|++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHH
Confidence 3469999999999999999844
No 463
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.25 E-value=0.0013 Score=50.55 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=16.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.+.|+|.|++||||||+.+.|.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999754
No 464
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.25 E-value=0.0026 Score=48.49 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.++|.|++|+|||+|++.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4569999999999999999854
No 465
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.23 E-value=0.0027 Score=46.05 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.++|.|++|+|||+|++.+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 39999999999999999854
No 466
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.23 E-value=0.003 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+..-+++.|++|+|||+|++.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34567888999999999999843
No 467
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.23 E-value=0.0032 Score=48.51 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=19.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHH
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~ 33 (221)
.+...++|.|++|+|||++++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 44567999999999999999863
No 468
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.23 E-value=0.0026 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.|++.|++|+|||++++.+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999854
No 469
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.22 E-value=0.0025 Score=50.48 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHHh---------CCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 158 YNFEKPFLYLARKLA---------GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~---------~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
.+.++....|+.++. ..|+++++|||.++ +|+.....+.+.+.++.
T Consensus 267 S~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~-----LD~~~~~~l~~~l~~~~ 321 (359)
T 2o5v_A 267 SRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAE-----LDPHRRQYLLDLAASVP 321 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGC-----CCHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCcccc-----CCHHHHHHHHHHHHhcC
Confidence 344566678888888 79999999999999 99999999999988753
No 470
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.22 E-value=0.0018 Score=48.88 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=19.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHH
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~ 33 (221)
..+...|+|.|..||||||+++.+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L 44 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNIL 44 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTT
T ss_pred ccCceEEEEECCCCCCHHHHHHHH
Confidence 345578999999999999999973
No 471
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.19 E-value=0.0041 Score=47.93 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+.-.++++|++|+|||++++.+.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHH
Confidence 44579999999999999999744
No 472
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.19 E-value=0.0019 Score=50.44 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHh----CCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593 159 NFEKPFLYLARKLA----GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 159 ~i~~~~~~l~~~l~----~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+.++....|++++. ..|+++++|||+++ +|+...+.+.+.++++.
T Consensus 222 ~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~-----LD~~~~~~l~~~l~~~~ 270 (322)
T 1e69_A 222 GGEKALVGLALLFALMEIKPSPFYVLDEVDSP-----LDDYNAERFKRLLKENS 270 (322)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS-----CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHhc
Confidence 44566678888875 57889999999999 99999999999998874
No 473
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.18 E-value=0.0045 Score=50.09 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
...-|+++|++||||||+.+++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999999854
No 474
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.16 E-value=0.0037 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
..-|+|+||+|||||||...+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 4568999999999999999854
No 475
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.16 E-value=0.0027 Score=51.62 Aligned_cols=47 Identities=19% Similarity=0.136 Sum_probs=39.2
Q ss_pred CChHHHHHHHHHHHh----CCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593 158 YNFEKPFLYLARKLA----GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~~i~~~~~~l~~~l~----~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.+.++....|+.++. ..|+++++|||.++ +|+.....+.+.++++..
T Consensus 335 S~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~-----LD~~~~~~l~~~l~~~~~ 385 (430)
T 1w1w_A 335 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAA-----LDITNVQRIAAYIRRHRN 385 (430)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTT-----CCHHHHHHHHHHHHHHCB
T ss_pred CcchHHHHHHHHHHHHhcCCCCCEEEeCCCccc-----CCHHHHHHHHHHHHHHhc
Confidence 345666778888887 57889999999999 999999999999988743
No 476
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.12 E-value=0.0029 Score=49.26 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
-.++|.|++|+|||||++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 468999999999999999854
No 477
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.0024 Score=50.28 Aligned_cols=19 Identities=42% Similarity=0.565 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 027593 16 LVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 16 i~v~G~~g~GKStli~~~~ 34 (221)
++++|++|+||||+++.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la 57 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALL 57 (354)
T ss_dssp EEEECSTTSSHHHHHHTHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999999754
No 478
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.11 E-value=0.0044 Score=46.93 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.+...+++.|++|+|||+|++.+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 455689999999999999999854
No 479
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.11 E-value=0.0026 Score=45.91 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=21.7
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHh
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.......|+|+|++|+|||||...|.
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHHHHHH
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHH
Confidence 34456779999999999999999855
No 480
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.07 E-value=0.0025 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+.-.|+|+|++|||||||++.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La 390 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALA 390 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHH
Confidence 45679999999999999999743
No 481
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.06 E-value=0.0032 Score=49.89 Aligned_cols=22 Identities=45% Similarity=0.499 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.++|.|++|+|||||++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~ 66 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVL 66 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999854
No 482
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.04 E-value=0.0033 Score=50.56 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
-++|+|++|+|||||+..+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 58999999999999999765
No 483
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.02 E-value=0.004 Score=49.46 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.++|.|++|+|||||++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~ 65 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLW 65 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999854
No 484
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.99 E-value=0.0038 Score=48.99 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
++++.|++|+||||+++.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 38999999999999999854
No 485
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.99 E-value=0.0038 Score=48.93 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
.-|+|+|++|||||||...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHH
Confidence 469999999999999998744
No 486
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.97 E-value=0.004 Score=48.44 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
..|+|+|++|||||||...+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999998743
No 487
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.96 E-value=0.0021 Score=43.77 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=18.0
Q ss_pred ceEEEEEcCCCCcHHHHHHH
Q 027593 13 SFKLVIVGDGGTGKTTFVKR 32 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~ 32 (221)
...|++.|++|+|||++.+.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGG
T ss_pred CCcEEEECCCCccHHHHHHH
Confidence 35699999999999999997
No 488
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.96 E-value=0.0055 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+.-.|++.|++|+|||+|++.+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 45679999999999999999854
No 489
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.94 E-value=0.0055 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHH
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~ 33 (221)
|+..-|+|.|++||||||+++.+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l 26 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYL 26 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHH
Confidence 56678999999999999999984
No 490
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.93 E-value=0.0037 Score=54.39 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027593 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~g~GKStli~~~~ 34 (221)
.++|+|++|+|||||++.+.
T Consensus 578 i~~I~GpNGsGKSTlLr~ia 597 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTA 597 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 58999999999999999843
No 491
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.92 E-value=0.006 Score=44.94 Aligned_cols=28 Identities=32% Similarity=0.228 Sum_probs=20.8
Q ss_pred CCccCCceEEEEEcCCCCcHHHHHHHHh
Q 027593 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+...++..-|++.|..||||||+++.+.
T Consensus 15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 15 QTQGPGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp ----CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3345566789999999999999999743
No 492
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.91 E-value=0.0044 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027593 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~~ 34 (221)
.-.+++.|++|+|||++++.+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999854
No 493
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.91 E-value=0.0047 Score=43.47 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=22.1
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhc
Q 027593 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 9 ~~~~~~~i~v~G~~g~GKStli~~~~~ 35 (221)
......-|++.|++|+||||+...|+.
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 344556799999999999999998764
No 494
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.91 E-value=0.0042 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027593 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~g~GKStli~~~~ 34 (221)
+.-.|++.|++|+|||+|++.+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHH
Confidence 33579999999999999999854
No 495
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.90 E-value=0.004 Score=54.52 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
=.++|+|++|+|||||++.+.
T Consensus 608 ~i~~ItGpNGsGKSTlLr~ia 628 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTA 628 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 358999999999999999844
No 496
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.89 E-value=0.0057 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.+...|++.|++|+|||++.+.+-
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999843
No 497
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.87 E-value=0.005 Score=49.35 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 027593 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 11 ~~~~~i~v~G~~g~GKStli~~~~~ 35 (221)
....+++|+|++|+||||+++.++.
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccCceEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999998664
No 498
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.87 E-value=0.0058 Score=48.15 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 027593 13 SFKLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 13 ~~~i~v~G~~g~GKStli~~~ 33 (221)
..+|+++|++|+||||+.+.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~l 44 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEEL 44 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHH
Confidence 467999999999999999863
No 499
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.0046 Score=50.10 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027593 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~g~GKStli~~~~ 34 (221)
--|++.||||+|||+|++++-
T Consensus 207 rGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999843
No 500
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.84 E-value=0.0055 Score=45.58 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=20.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 10 ~~~~~~i~v~G~~g~GKStli~~~~ 34 (221)
.|+..-|+|.|++||||||+++.+.
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4556789999999999999999843
Done!