Query 027594
Match_columns 221
No_of_seqs 201 out of 1650
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 12:14:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 100.0 1.8E-31 4E-36 206.8 11.0 167 20-198 3-172 (173)
2 PF06325 PrmA: Ribosomal prote 99.8 1.2E-19 2.6E-24 150.7 13.5 154 19-206 126-282 (295)
3 COG4123 Predicted O-methyltran 99.8 2.1E-19 4.6E-24 144.6 14.1 158 18-205 13-192 (248)
4 PF05175 MTS: Methyltransferas 99.8 6E-19 1.3E-23 136.4 15.8 136 22-185 1-144 (170)
5 COG2264 PrmA Ribosomal protein 99.8 3.5E-19 7.6E-24 146.9 14.5 157 21-208 129-289 (300)
6 KOG2793 Putative N2,N2-dimethy 99.8 9.9E-19 2.1E-23 140.8 13.6 168 31-205 49-226 (248)
7 COG3897 Predicted methyltransf 99.8 3.7E-19 8E-24 136.4 7.5 157 4-186 18-184 (218)
8 KOG3201 Uncharacterized conser 99.8 4.2E-19 9.1E-24 132.0 5.7 154 33-205 4-164 (201)
9 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.6E-18 3.4E-23 137.6 8.3 109 63-187 58-167 (243)
10 PRK15001 SAM-dependent 23S rib 99.7 1.5E-16 3.1E-21 136.6 17.6 150 12-187 188-345 (378)
11 TIGR00537 hemK_rel_arch HemK-r 99.7 1.5E-16 3.3E-21 123.9 16.1 138 42-210 8-168 (179)
12 COG2813 RsmC 16S RNA G1207 met 99.7 2.4E-16 5.3E-21 129.5 16.9 158 18-209 124-290 (300)
13 TIGR00406 prmA ribosomal prote 99.7 2.6E-16 5.5E-21 131.5 15.9 156 20-207 125-283 (288)
14 PF12847 Methyltransf_18: Meth 99.7 4.3E-17 9.3E-22 117.0 9.6 104 64-181 1-111 (112)
15 PLN02396 hexaprenyldihydroxybe 99.7 3.2E-16 6.9E-21 132.2 12.5 109 63-185 130-239 (322)
16 PRK14967 putative methyltransf 99.7 2.9E-15 6.4E-20 120.7 17.5 155 23-208 7-185 (223)
17 PF13847 Methyltransf_31: Meth 99.7 6.3E-16 1.4E-20 117.3 12.7 110 64-187 3-116 (152)
18 KOG1270 Methyltransferases [Co 99.7 2.5E-16 5.3E-21 126.2 7.8 111 63-186 88-200 (282)
19 PRK00517 prmA ribosomal protei 99.7 4.2E-15 9.1E-20 121.8 15.3 150 20-207 85-238 (250)
20 TIGR00138 gidB 16S rRNA methyl 99.6 1.1E-14 2.4E-19 113.7 14.9 127 64-210 42-172 (181)
21 PRK11036 putative S-adenosyl-L 99.6 2.4E-15 5.2E-20 123.6 11.8 108 64-184 44-152 (255)
22 PRK14968 putative methyltransf 99.6 1.4E-14 3E-19 113.3 15.2 143 39-208 9-174 (188)
23 COG2226 UbiE Methylase involve 99.6 8.9E-15 1.9E-19 117.8 13.5 107 64-185 51-160 (238)
24 PF01209 Ubie_methyltran: ubiE 99.6 1.1E-14 2.3E-19 117.9 14.0 109 63-186 46-158 (233)
25 PRK11207 tellurite resistance 99.6 5.8E-15 1.3E-19 116.8 12.0 101 64-180 30-133 (197)
26 PLN02244 tocopherol O-methyltr 99.6 1.4E-14 3E-19 123.8 15.1 105 63-181 117-223 (340)
27 PRK00107 gidB 16S rRNA methylt 99.6 2.5E-14 5.3E-19 112.1 15.0 120 64-206 45-168 (187)
28 TIGR00477 tehB tellurite resis 99.6 1.3E-14 2.8E-19 114.6 12.4 100 64-180 30-132 (195)
29 PF08241 Methyltransf_11: Meth 99.6 4.7E-15 1E-19 102.7 8.7 93 69-179 1-95 (95)
30 PRK09489 rsmC 16S ribosomal RN 99.6 4.4E-14 9.5E-19 120.4 15.7 131 22-182 166-304 (342)
31 PRK15128 23S rRNA m(5)C1962 me 99.6 1.7E-13 3.8E-18 118.8 17.2 141 64-215 220-377 (396)
32 TIGR00452 methyltransferase, p 99.6 4.6E-14 1E-18 118.7 13.2 121 38-181 103-225 (314)
33 TIGR03704 PrmC_rel_meth putati 99.6 1.6E-13 3.4E-18 112.5 15.7 145 41-210 69-243 (251)
34 PF13659 Methyltransf_26: Meth 99.6 1.1E-14 2.3E-19 105.4 7.4 106 65-182 1-116 (117)
35 COG2890 HemK Methylase of poly 99.6 1.9E-13 4.2E-18 113.5 15.7 103 67-186 113-243 (280)
36 PRK15068 tRNA mo(5)U34 methylt 99.6 8.5E-14 1.8E-18 117.9 13.8 105 62-181 120-226 (322)
37 PRK12335 tellurite resistance 99.6 5.4E-14 1.2E-18 117.5 12.2 101 64-181 120-223 (287)
38 PRK08287 cobalt-precorrin-6Y C 99.5 1.3E-13 2.7E-18 108.2 13.3 116 64-201 31-150 (187)
39 PLN02233 ubiquinone biosynthes 99.5 2.2E-13 4.7E-18 112.3 15.1 110 63-184 72-185 (261)
40 COG2263 Predicted RNA methylas 99.5 1.5E-13 3.3E-18 105.4 13.1 77 61-156 42-120 (198)
41 PF02353 CMAS: Mycolic acid cy 99.5 8.7E-14 1.9E-18 115.1 12.1 104 61-181 59-166 (273)
42 PF03848 TehB: Tellurite resis 99.5 1.2E-13 2.6E-18 108.0 11.6 103 62-181 28-133 (192)
43 PTZ00098 phosphoethanolamine N 99.5 1.7E-13 3.8E-18 113.0 13.1 105 62-183 50-158 (263)
44 COG2230 Cfa Cyclopropane fatty 99.5 1.4E-13 3.1E-18 112.9 12.4 105 61-182 69-177 (283)
45 PRK11783 rlmL 23S rRNA m(2)G24 99.5 6.5E-13 1.4E-17 123.2 17.4 139 64-217 538-690 (702)
46 TIGR02752 MenG_heptapren 2-hep 99.5 3E-13 6.4E-18 109.4 13.0 105 63-182 44-152 (231)
47 PF13489 Methyltransf_23: Meth 99.5 1.7E-13 3.8E-18 104.1 11.0 99 62-185 20-119 (161)
48 smart00828 PKS_MT Methyltransf 99.5 4.1E-13 8.9E-18 108.0 13.7 125 66-205 1-142 (224)
49 PRK14966 unknown domain/N5-glu 99.5 8.5E-13 1.8E-17 114.0 16.1 136 40-202 236-400 (423)
50 PRK10258 biotin biosynthesis p 99.5 5.8E-13 1.3E-17 109.1 14.3 100 64-183 42-142 (251)
51 PRK11873 arsM arsenite S-adeno 99.5 5.4E-13 1.2E-17 110.6 14.2 106 62-182 75-184 (272)
52 TIGR03533 L3_gln_methyl protei 99.5 6.6E-13 1.4E-17 110.7 14.7 104 64-182 121-252 (284)
53 PLN02336 phosphoethanolamine N 99.5 6.2E-13 1.4E-17 118.5 14.9 106 63-184 265-372 (475)
54 TIGR03534 RF_mod_PrmC protein- 99.5 1.2E-12 2.6E-17 106.9 15.1 139 39-204 70-238 (251)
55 TIGR00536 hemK_fam HemK family 99.5 1.4E-12 3.1E-17 108.8 15.4 106 66-186 116-249 (284)
56 PF08242 Methyltransf_12: Meth 99.5 1.5E-14 3.3E-19 101.7 2.4 95 69-177 1-99 (99)
57 PRK15451 tRNA cmo(5)U34 methyl 99.5 7E-13 1.5E-17 108.5 12.1 105 64-184 56-167 (247)
58 PRK10909 rsmD 16S rRNA m(2)G96 99.5 6.4E-13 1.4E-17 105.0 11.4 106 64-184 53-162 (199)
59 PRK13168 rumA 23S rRNA m(5)U19 99.5 2.8E-12 6E-17 113.3 16.7 143 42-209 282-426 (443)
60 TIGR00095 RNA methyltransferas 99.5 7.8E-13 1.7E-17 103.9 11.8 109 62-182 47-160 (189)
61 PRK05134 bifunctional 3-demeth 99.5 1.1E-12 2.4E-17 106.2 12.8 118 44-183 35-153 (233)
62 PF08003 Methyltransf_9: Prote 99.5 8.8E-13 1.9E-17 108.6 12.1 106 61-180 112-218 (315)
63 PRK00121 trmB tRNA (guanine-N( 99.5 4.2E-13 9.2E-18 106.5 10.0 125 64-203 40-177 (202)
64 PRK11805 N5-glutamine S-adenos 99.5 1.8E-12 4E-17 109.1 14.2 102 66-182 135-264 (307)
65 PRK09328 N5-glutamine S-adenos 99.5 3.8E-12 8.1E-17 105.5 15.6 136 40-201 91-256 (275)
66 PRK00377 cbiT cobalt-precorrin 99.5 4E-12 8.6E-17 100.6 14.9 124 61-202 37-165 (198)
67 TIGR02469 CbiT precorrin-6Y C5 99.5 4.8E-12 1E-16 92.0 14.3 102 63-181 18-122 (124)
68 PRK14103 trans-aconitate 2-met 99.5 1.4E-12 3E-17 107.2 12.7 96 63-181 28-126 (255)
69 PRK01683 trans-aconitate 2-met 99.4 2.3E-12 5.1E-17 105.9 13.7 98 63-181 30-130 (258)
70 KOG1499 Protein arginine N-met 99.4 3.7E-13 7.9E-18 112.3 8.6 105 60-178 56-164 (346)
71 PLN02490 MPBQ/MSBQ methyltrans 99.4 2.4E-12 5.1E-17 109.3 13.6 101 64-182 113-216 (340)
72 TIGR00080 pimt protein-L-isoas 99.4 2.6E-12 5.7E-17 102.9 13.1 114 41-182 61-178 (215)
73 PRK01544 bifunctional N5-gluta 99.4 3.7E-12 8.1E-17 113.9 15.2 106 64-184 138-272 (506)
74 PF05401 NodS: Nodulation prot 99.4 4.8E-13 1E-17 103.8 8.1 122 66-205 45-178 (201)
75 PRK13944 protein-L-isoaspartat 99.4 5.3E-12 1.1E-16 100.5 14.1 100 63-182 71-174 (205)
76 TIGR00740 methyltransferase, p 99.4 2.7E-12 5.8E-17 104.5 11.7 106 64-185 53-165 (239)
77 COG1092 Predicted SAM-dependen 99.4 7.7E-12 1.7E-16 107.6 14.9 143 63-216 216-375 (393)
78 PRK13942 protein-L-isoaspartat 99.4 5.1E-12 1.1E-16 101.1 12.8 113 41-181 60-176 (212)
79 TIGR03840 TMPT_Se_Te thiopurin 99.4 1.7E-11 3.6E-16 98.1 15.2 158 41-211 19-191 (213)
80 TIGR01177 conserved hypothetic 99.4 8E-12 1.7E-16 106.4 14.1 120 43-184 168-297 (329)
81 PRK00216 ubiE ubiquinone/menaq 99.4 6.1E-12 1.3E-16 101.7 12.8 105 64-182 51-159 (239)
82 PRK08317 hypothetical protein; 99.4 1.2E-11 2.5E-16 99.9 14.3 105 61-181 16-124 (241)
83 PRK04266 fibrillarin; Provisio 99.4 6.5E-11 1.4E-15 95.5 18.4 130 62-207 70-210 (226)
84 PLN02672 methionine S-methyltr 99.4 9.5E-12 2.1E-16 118.3 15.6 159 41-209 101-305 (1082)
85 PRK11705 cyclopropane fatty ac 99.4 1.3E-11 2.8E-16 106.9 15.1 99 62-181 165-267 (383)
86 TIGR01983 UbiG ubiquinone bios 99.4 6.5E-12 1.4E-16 101.0 12.3 127 39-182 23-150 (224)
87 PF13649 Methyltransf_25: Meth 99.4 1.2E-12 2.6E-17 92.4 6.9 92 68-175 1-101 (101)
88 TIGR02716 C20_methyl_CrtF C-20 99.4 1.2E-11 2.6E-16 104.3 14.1 104 63-182 148-255 (306)
89 TIGR00091 tRNA (guanine-N(7)-) 99.4 5.2E-12 1.1E-16 99.7 11.2 126 64-203 16-154 (194)
90 TIGR02085 meth_trns_rumB 23S r 99.4 1.8E-11 3.9E-16 105.9 15.3 125 64-209 233-358 (374)
91 TIGR02021 BchM-ChlM magnesium 99.4 5.8E-12 1.2E-16 101.2 11.1 101 62-179 53-156 (219)
92 TIGR00479 rumA 23S rRNA (uraci 99.4 2.7E-11 5.9E-16 106.7 15.9 128 64-209 292-422 (431)
93 TIGR02072 BioC biotin biosynth 99.4 8.7E-12 1.9E-16 100.7 11.7 101 63-182 33-136 (240)
94 PRK03522 rumB 23S rRNA methylu 99.4 3E-11 6.5E-16 102.3 15.2 125 64-209 173-298 (315)
95 COG2242 CobL Precorrin-6B meth 99.4 6.7E-11 1.4E-15 91.1 15.6 126 62-208 32-162 (187)
96 PRK00312 pcm protein-L-isoaspa 99.4 2.5E-11 5.4E-16 97.0 13.9 114 41-182 62-176 (212)
97 PRK05785 hypothetical protein; 99.4 8.3E-12 1.8E-16 100.8 11.1 88 64-174 51-140 (226)
98 PF10672 Methyltrans_SAM: S-ad 99.3 1.2E-11 2.5E-16 102.6 11.7 122 64-196 123-252 (286)
99 PRK07402 precorrin-6B methylas 99.3 8.1E-11 1.7E-15 93.0 14.9 129 63-209 39-172 (196)
100 PRK13255 thiopurine S-methyltr 99.3 8E-11 1.7E-15 94.5 14.9 156 42-210 23-193 (218)
101 KOG1540 Ubiquinone biosynthesi 99.3 5.6E-11 1.2E-15 95.2 13.4 112 61-184 97-217 (296)
102 PLN02585 magnesium protoporphy 99.3 4.6E-11 1E-15 100.7 13.7 104 63-181 143-249 (315)
103 COG2518 Pcm Protein-L-isoaspar 99.3 2.4E-11 5.1E-16 95.5 11.0 101 61-182 69-170 (209)
104 KOG3191 Predicted N6-DNA-methy 99.3 3.6E-11 7.9E-16 91.6 10.8 150 41-213 24-199 (209)
105 PRK14902 16S rRNA methyltransf 99.3 9.6E-11 2.1E-15 103.6 15.3 107 64-184 250-382 (444)
106 PF03602 Cons_hypoth95: Conser 99.3 3.7E-12 8.1E-17 99.4 5.7 110 63-184 41-156 (183)
107 PRK07580 Mg-protoporphyrin IX 99.3 4.1E-11 8.8E-16 96.7 11.9 96 63-175 62-160 (230)
108 PTZ00146 fibrillarin; Provisio 99.3 2.5E-10 5.4E-15 94.5 16.5 133 33-185 104-241 (293)
109 PRK11188 rrmJ 23S rRNA methylt 99.3 1.1E-10 2.3E-15 93.2 13.9 119 63-205 50-187 (209)
110 KOG1500 Protein arginine N-met 99.3 1.6E-11 3.5E-16 101.7 9.2 105 60-180 173-281 (517)
111 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 1.3E-10 2.8E-15 93.0 14.0 102 64-182 39-144 (223)
112 PRK05031 tRNA (uracil-5-)-meth 99.3 1.7E-10 3.7E-15 99.4 15.5 124 66-209 208-345 (362)
113 PRK06922 hypothetical protein; 99.3 3E-11 6.5E-16 109.1 11.0 106 63-182 417-538 (677)
114 TIGR02143 trmA_only tRNA (urac 99.3 1.5E-10 3.3E-15 99.3 14.9 124 66-209 199-336 (353)
115 KOG2904 Predicted methyltransf 99.3 1.8E-10 4E-15 93.1 14.1 136 42-194 130-300 (328)
116 TIGR03587 Pse_Me-ase pseudamin 99.3 7.6E-11 1.6E-15 93.7 11.6 96 63-181 42-142 (204)
117 PLN02336 phosphoethanolamine N 99.3 5.8E-11 1.3E-15 105.9 11.7 102 64-180 37-141 (475)
118 KOG1271 Methyltransferases [Ge 99.3 1.7E-10 3.7E-15 88.0 12.3 148 40-207 46-206 (227)
119 PRK14901 16S rRNA methyltransf 99.2 3.4E-10 7.4E-15 99.8 16.0 110 63-184 251-387 (434)
120 PLN02781 Probable caffeoyl-CoA 99.2 7.2E-11 1.6E-15 95.8 10.8 102 64-179 68-176 (234)
121 KOG4300 Predicted methyltransf 99.2 5.9E-11 1.3E-15 92.3 9.6 105 67-186 79-187 (252)
122 cd02440 AdoMet_MTases S-adenos 99.2 9.2E-11 2E-15 81.3 9.9 100 67-180 1-103 (107)
123 PRK10901 16S rRNA methyltransf 99.2 1.8E-10 3.8E-15 101.4 13.7 106 63-182 243-373 (427)
124 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.9E-10 6.2E-15 94.0 13.9 108 64-186 71-204 (264)
125 PRK06202 hypothetical protein; 99.2 1.4E-10 3.1E-15 93.9 11.3 102 64-185 60-170 (232)
126 PLN03075 nicotianamine synthas 99.2 2.1E-10 4.5E-15 95.3 12.2 104 64-181 123-233 (296)
127 PHA03412 putative methyltransf 99.2 1.3E-10 2.9E-15 93.2 10.4 92 64-176 49-158 (241)
128 PRK11727 23S rRNA mA1618 methy 99.2 1.2E-10 2.5E-15 98.2 10.6 84 64-158 114-203 (321)
129 PRK14903 16S rRNA methyltransf 99.2 2.8E-10 6.1E-15 100.1 13.4 110 63-186 236-371 (431)
130 COG0742 N6-adenine-specific me 99.2 2E-10 4.4E-15 88.9 10.3 110 62-183 41-156 (187)
131 smart00138 MeTrc Methyltransfe 99.2 8E-11 1.7E-15 97.2 8.6 117 64-183 99-244 (264)
132 PHA03411 putative methyltransf 99.2 2.4E-10 5.1E-15 93.8 11.1 99 65-184 65-186 (279)
133 PRK13943 protein-L-isoaspartat 99.2 4.8E-10 1.1E-14 94.8 12.9 99 62-181 78-180 (322)
134 COG4976 Predicted methyltransf 99.2 3.5E-11 7.6E-16 94.9 5.2 129 65-211 126-269 (287)
135 PRK14121 tRNA (guanine-N(7)-)- 99.2 3.1E-10 6.8E-15 97.5 11.1 107 64-183 122-237 (390)
136 PRK04457 spermidine synthase; 99.2 2.5E-10 5.5E-15 94.1 10.2 122 64-201 66-196 (262)
137 KOG3420 Predicted RNA methylas 99.2 7E-11 1.5E-15 86.9 5.9 81 60-156 44-126 (185)
138 PRK14904 16S rRNA methyltransf 99.1 1.6E-09 3.5E-14 95.9 15.5 123 37-185 233-381 (445)
139 TIGR03438 probable methyltrans 99.1 4.1E-10 8.9E-15 94.7 10.9 109 64-183 63-179 (301)
140 PF01135 PCMT: Protein-L-isoas 99.1 2.4E-10 5.3E-15 91.0 9.0 114 41-182 56-173 (209)
141 TIGR00563 rsmB ribosomal RNA s 99.1 1.4E-09 3E-14 95.8 14.5 120 64-195 238-386 (426)
142 KOG2920 Predicted methyltransf 99.1 1.3E-11 2.9E-16 100.5 1.3 149 29-187 85-240 (282)
143 smart00650 rADc Ribosomal RNA 99.1 9.3E-10 2E-14 84.9 11.6 97 63-179 12-111 (169)
144 PRK11088 rrmA 23S rRNA methylt 99.1 8.5E-10 1.8E-14 91.5 12.0 93 64-183 85-183 (272)
145 TIGR00438 rrmJ cell division p 99.1 3.1E-09 6.6E-14 83.4 14.6 121 61-205 29-168 (188)
146 PRK13256 thiopurine S-methyltr 99.1 8E-09 1.7E-13 83.0 15.0 158 41-209 28-199 (226)
147 COG4106 Tam Trans-aconitate me 99.1 8.9E-10 1.9E-14 86.4 9.1 98 63-181 29-129 (257)
148 PLN02476 O-methyltransferase 99.1 4.3E-09 9.2E-14 87.0 13.3 129 64-206 118-267 (278)
149 PF01596 Methyltransf_3: O-met 99.1 7.7E-10 1.7E-14 87.8 8.5 102 64-179 45-153 (205)
150 COG2519 GCD14 tRNA(1-methylade 99.0 1.1E-08 2.3E-13 82.5 14.1 101 61-181 91-195 (256)
151 PRK04338 N(2),N(2)-dimethylgua 99.0 1.8E-09 3.9E-14 93.4 9.7 98 65-181 58-158 (382)
152 COG4122 Predicted O-methyltran 99.0 3.7E-09 8E-14 84.2 10.7 102 64-180 59-165 (219)
153 COG2265 TrmA SAM-dependent met 99.0 5.6E-09 1.2E-13 91.5 12.7 149 42-218 278-428 (432)
154 PRK00811 spermidine synthase; 99.0 4.8E-09 1E-13 87.5 11.5 128 64-200 76-212 (283)
155 TIGR00478 tly hemolysin TlyA f 99.0 2E-09 4.3E-14 86.7 7.8 113 37-180 55-170 (228)
156 PF02475 Met_10: Met-10+ like- 99.0 2.3E-09 5E-14 84.7 7.9 96 63-177 100-198 (200)
157 PF07021 MetW: Methionine bios 98.9 4E-09 8.7E-14 81.8 8.2 97 64-183 13-111 (193)
158 PF05958 tRNA_U5-meth_tr: tRNA 98.9 3.1E-08 6.7E-13 85.1 14.4 162 18-209 160-335 (352)
159 PTZ00338 dimethyladenosine tra 98.9 1.8E-08 3.8E-13 84.4 11.5 82 61-158 33-115 (294)
160 COG1041 Predicted DNA modifica 98.9 4.1E-08 8.8E-13 82.7 13.0 119 42-182 182-311 (347)
161 PF05185 PRMT5: PRMT5 arginine 98.9 1.4E-08 3.1E-13 89.5 10.7 100 64-178 186-294 (448)
162 PF00891 Methyltransf_2: O-met 98.9 2.7E-08 5.9E-13 81.0 11.6 97 64-184 100-202 (241)
163 PRK14896 ksgA 16S ribosomal RN 98.9 1.5E-08 3.2E-13 83.5 9.8 76 62-156 27-103 (258)
164 TIGR00417 speE spermidine synt 98.9 2.9E-08 6.3E-13 82.3 11.5 107 64-180 72-185 (270)
165 KOG1541 Predicted protein carb 98.9 3.3E-08 7.1E-13 77.9 11.0 118 64-200 50-180 (270)
166 PF05724 TPMT: Thiopurine S-me 98.9 3.7E-08 8E-13 79.0 11.7 156 41-209 22-192 (218)
167 TIGR02081 metW methionine bios 98.9 2.2E-08 4.8E-13 78.9 10.0 89 64-172 13-103 (194)
168 PLN02589 caffeoyl-CoA O-methyl 98.9 2.2E-08 4.8E-13 81.6 10.1 102 64-179 79-188 (247)
169 PRK03612 spermidine synthase; 98.9 3.2E-08 7E-13 89.2 11.9 133 64-203 297-440 (521)
170 PRK00274 ksgA 16S ribosomal RN 98.8 1.3E-08 2.9E-13 84.4 8.6 77 62-156 40-117 (272)
171 TIGR00308 TRM1 tRNA(guanine-26 98.8 2.6E-08 5.5E-13 86.0 10.5 99 65-181 45-147 (374)
172 KOG2361 Predicted methyltransf 98.8 1.4E-08 3E-13 81.0 7.9 107 67-186 74-188 (264)
173 PF08704 GCD14: tRNA methyltra 98.8 7.2E-08 1.6E-12 78.5 12.2 123 61-201 37-165 (247)
174 PRK04148 hypothetical protein; 98.8 6.6E-08 1.4E-12 71.2 10.9 80 44-151 3-84 (134)
175 KOG3010 Methyltransferase [Gen 98.8 1E-08 2.2E-13 81.7 6.1 98 67-179 36-135 (261)
176 PF02527 GidB: rRNA small subu 98.8 5.4E-08 1.2E-12 75.9 10.0 118 67-205 51-173 (184)
177 PF06080 DUF938: Protein of un 98.7 1E-07 2.3E-12 74.9 9.8 103 67-180 28-140 (204)
178 PF05219 DREV: DREV methyltran 98.7 1.2E-07 2.6E-12 76.8 10.2 95 63-181 93-188 (265)
179 KOG2899 Predicted methyltransf 98.7 1.4E-07 3E-12 75.3 9.6 120 61-180 55-208 (288)
180 PF01170 UPF0020: Putative RNA 98.7 7.5E-08 1.6E-12 75.0 8.0 117 43-181 14-150 (179)
181 PRK01581 speE spermidine synth 98.7 1.1E-07 2.4E-12 81.0 9.3 108 64-180 150-267 (374)
182 PLN02366 spermidine synthase 98.7 3E-07 6.4E-12 77.5 11.7 128 64-200 91-227 (308)
183 COG0357 GidB Predicted S-adeno 98.7 1.8E-07 3.8E-12 74.5 9.7 125 65-209 68-197 (215)
184 COG2520 Predicted methyltransf 98.7 4.1E-07 8.9E-12 77.1 12.0 98 64-179 188-287 (341)
185 PF09445 Methyltransf_15: RNA 98.7 4.8E-08 1E-12 74.5 5.7 78 67-155 2-80 (163)
186 PRK11783 rlmL 23S rRNA m(2)G24 98.6 1.1E-06 2.4E-11 81.9 15.1 152 13-182 138-348 (702)
187 PF05971 Methyltransf_10: Prot 98.6 4.1E-07 8.8E-12 75.8 10.3 83 65-158 103-191 (299)
188 TIGR00755 ksgA dimethyladenosi 98.6 5.6E-07 1.2E-11 73.9 10.9 75 62-155 27-105 (253)
189 PF01861 DUF43: Protein of unk 98.6 4.9E-06 1.1E-10 66.9 15.2 151 32-206 20-177 (243)
190 PF03291 Pox_MCEL: mRNA cappin 98.5 7.2E-07 1.6E-11 75.8 10.0 133 38-183 43-188 (331)
191 PF05148 Methyltransf_8: Hypot 98.5 2.7E-06 5.9E-11 66.9 11.7 126 37-204 53-182 (219)
192 PLN02232 ubiquinone biosynthes 98.5 1.4E-06 3E-11 66.6 9.7 84 90-185 1-85 (160)
193 PF02390 Methyltransf_4: Putat 98.5 6.1E-07 1.3E-11 70.8 8.0 124 66-203 19-156 (195)
194 KOG1661 Protein-L-isoaspartate 98.5 1.1E-06 2.5E-11 68.8 9.2 109 61-180 79-192 (237)
195 COG2521 Predicted archaeal met 98.5 7.7E-07 1.7E-11 70.8 8.0 129 63-202 133-272 (287)
196 KOG2187 tRNA uracil-5-methyltr 98.4 2E-06 4.2E-11 75.6 10.2 125 41-185 367-494 (534)
197 COG0116 Predicted N6-adenine-s 98.4 2E-05 4.3E-10 67.5 15.5 148 13-181 140-344 (381)
198 KOG1975 mRNA cap methyltransfe 98.4 1.4E-06 3E-11 72.5 8.1 114 64-183 117-239 (389)
199 COG0220 Predicted S-adenosylme 98.4 3E-06 6.5E-11 68.3 9.3 107 66-184 50-167 (227)
200 COG3963 Phospholipid N-methylt 98.4 4.1E-06 8.9E-11 63.4 9.1 122 37-182 28-157 (194)
201 KOG2940 Predicted methyltransf 98.3 1.6E-06 3.4E-11 69.0 6.7 100 64-180 72-173 (325)
202 PLN02823 spermine synthase 98.3 6.4E-06 1.4E-10 70.2 10.7 126 64-201 103-244 (336)
203 TIGR02987 met_A_Alw26 type II 98.3 1.2E-05 2.7E-10 72.7 12.3 81 64-156 31-124 (524)
204 PF02384 N6_Mtase: N-6 DNA Met 98.3 8.4E-06 1.8E-10 68.8 10.4 128 63-203 45-208 (311)
205 PF05891 Methyltransf_PK: AdoM 98.2 2E-06 4.3E-11 68.2 5.0 126 63-203 54-197 (218)
206 PF08123 DOT1: Histone methyla 98.2 1.6E-06 3.5E-11 68.8 4.4 153 62-219 40-198 (205)
207 COG4076 Predicted RNA methylas 98.2 2.3E-06 5E-11 66.0 4.8 96 66-178 34-132 (252)
208 PRK11933 yebU rRNA (cytosine-C 98.2 5.1E-05 1.1E-09 67.5 13.9 109 63-185 112-246 (470)
209 PRK11760 putative 23S rRNA C24 98.2 6.8E-05 1.5E-09 63.5 13.9 119 39-182 186-306 (357)
210 PRK00536 speE spermidine synth 98.2 3.7E-05 8.1E-10 63.2 11.8 119 64-201 72-193 (262)
211 PRK10611 chemotaxis methyltran 98.2 6.5E-06 1.4E-10 68.6 7.5 117 65-183 116-264 (287)
212 PF01739 CheR: CheR methyltran 98.2 6.1E-06 1.3E-10 65.1 6.7 116 64-182 31-176 (196)
213 KOG1663 O-methyltransferase [S 98.1 5E-05 1.1E-09 60.5 11.6 104 62-179 71-181 (237)
214 KOG1501 Arginine N-methyltrans 98.1 5.4E-06 1.2E-10 71.5 6.5 96 67-176 69-170 (636)
215 COG0030 KsgA Dimethyladenosine 98.1 1.8E-05 3.8E-10 64.8 9.1 80 62-157 28-108 (259)
216 PF12147 Methyltransf_20: Puta 98.1 6.3E-05 1.4E-09 62.1 11.9 113 64-187 135-255 (311)
217 PF03141 Methyltransf_29: Puta 98.1 1E-05 2.2E-10 71.2 7.7 130 33-185 89-223 (506)
218 KOG0820 Ribosomal RNA adenine 98.1 2.5E-05 5.4E-10 63.7 9.2 98 33-154 35-133 (315)
219 KOG3045 Predicted RNA methylas 98.1 4.8E-05 1E-09 61.6 10.4 108 64-204 180-288 (325)
220 TIGR01444 fkbM_fam methyltrans 98.0 1.9E-05 4.1E-10 58.8 7.2 57 67-135 1-60 (143)
221 COG1352 CheR Methylase of chem 98.0 1.5E-05 3.2E-10 65.7 6.7 119 64-185 96-245 (268)
222 COG0144 Sun tRNA and rRNA cyto 98.0 0.00021 4.5E-09 61.6 13.8 114 62-187 154-294 (355)
223 COG1189 Predicted rRNA methyla 98.0 0.00012 2.6E-09 58.8 10.7 117 36-181 58-178 (245)
224 PRK01544 bifunctional N5-gluta 97.9 5.1E-05 1.1E-09 68.3 9.3 107 64-183 347-464 (506)
225 PF04816 DUF633: Family of unk 97.9 0.0003 6.4E-09 55.9 11.7 116 68-202 1-119 (205)
226 PF01269 Fibrillarin: Fibrilla 97.9 0.0007 1.5E-08 54.0 13.4 156 34-209 46-215 (229)
227 PF07942 N2227: N2227-like pro 97.9 0.00026 5.5E-09 58.5 11.3 138 62-204 54-239 (270)
228 COG0293 FtsJ 23S rRNA methylas 97.8 0.0003 6.6E-09 55.5 10.9 131 41-203 29-179 (205)
229 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 2.3E-05 5E-10 64.2 4.7 147 60-206 52-238 (256)
230 PF01728 FtsJ: FtsJ-like methy 97.8 1.5E-05 3.4E-10 61.9 3.5 49 40-95 4-57 (181)
231 PRK10742 putative methyltransf 97.8 0.00012 2.6E-09 59.4 8.4 85 67-156 91-176 (250)
232 PF01564 Spermine_synth: Sperm 97.8 0.0002 4.4E-09 58.6 9.6 128 64-201 76-213 (246)
233 PF00398 RrnaAD: Ribosomal RNA 97.8 7.3E-05 1.6E-09 61.7 7.1 108 42-173 15-123 (262)
234 PHA01634 hypothetical protein 97.8 0.0001 2.3E-09 53.4 6.6 51 60-110 24-76 (156)
235 COG0500 SmtA SAM-dependent met 97.7 0.0011 2.4E-08 48.2 11.9 103 68-185 52-159 (257)
236 KOG2497 Predicted methyltransf 97.7 3E-05 6.4E-10 63.6 3.3 134 22-171 51-190 (262)
237 KOG1709 Guanidinoacetate methy 97.7 0.00034 7.4E-09 55.3 8.4 104 63-181 100-206 (271)
238 PF03059 NAS: Nicotianamine sy 97.6 0.00076 1.6E-08 55.9 10.7 102 65-180 121-229 (276)
239 KOG2730 Methylase [General fun 97.6 4.1E-05 8.9E-10 60.6 2.7 85 64-159 94-180 (263)
240 PRK00050 16S rRNA m(4)C1402 me 97.6 0.00016 3.6E-09 60.5 6.3 45 63-107 18-66 (296)
241 KOG3987 Uncharacterized conser 97.5 2.8E-05 6E-10 61.1 0.0 94 64-181 112-207 (288)
242 PF11968 DUF3321: Putative met 97.4 0.003 6.6E-08 50.2 11.0 133 40-204 30-178 (219)
243 COG0421 SpeE Spermidine syntha 97.4 0.0013 2.8E-08 54.8 9.0 105 66-180 78-189 (282)
244 KOG2915 tRNA(1-methyladenosine 97.4 0.011 2.3E-07 48.6 13.8 104 61-181 102-209 (314)
245 PF13679 Methyltransf_32: Meth 97.4 0.00074 1.6E-08 50.4 6.7 47 63-109 24-77 (141)
246 PF09243 Rsm22: Mitochondrial 97.4 0.0019 4.1E-08 53.7 9.7 105 61-183 30-141 (274)
247 COG1889 NOP1 Fibrillarin-like 97.3 0.023 4.9E-07 44.8 14.2 149 36-205 51-212 (231)
248 TIGR03439 methyl_EasF probable 97.3 0.0021 4.7E-08 54.5 9.3 107 64-182 76-198 (319)
249 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.1 0.0021 4.6E-08 53.7 7.9 146 37-206 68-247 (283)
250 COG2384 Predicted SAM-dependen 97.1 0.018 4E-07 45.8 12.6 115 64-195 16-133 (226)
251 COG1568 Predicted methyltransf 97.0 0.0064 1.4E-07 50.0 9.4 130 60-204 148-285 (354)
252 KOG1269 SAM-dependent methyltr 97.0 0.0028 6.1E-08 54.7 7.8 103 62-179 108-213 (364)
253 COG3129 Predicted SAM-dependen 97.0 0.002 4.3E-08 51.6 6.3 79 64-156 78-165 (292)
254 PF13578 Methyltransf_24: Meth 97.0 0.00013 2.8E-09 51.5 -0.4 98 69-179 1-103 (106)
255 PF02005 TRM: N2,N2-dimethylgu 97.0 0.0024 5.3E-08 55.4 7.3 103 64-182 49-155 (377)
256 KOG2078 tRNA modification enzy 96.7 0.0026 5.7E-08 55.1 4.6 71 32-110 225-296 (495)
257 KOG1596 Fibrillarin and relate 96.6 0.039 8.5E-07 44.6 10.6 149 15-184 111-264 (317)
258 PF06962 rRNA_methylase: Putat 96.6 0.016 3.5E-07 43.1 7.9 104 88-205 1-123 (140)
259 COG4262 Predicted spermidine s 96.6 0.076 1.6E-06 45.6 12.7 109 64-179 289-405 (508)
260 cd00315 Cyt_C5_DNA_methylase C 96.5 0.0058 1.2E-07 50.8 5.6 40 67-106 2-43 (275)
261 COG5459 Predicted rRNA methyla 96.4 0.0064 1.4E-07 51.7 5.3 107 61-183 110-227 (484)
262 KOG2671 Putative RNA methylase 96.4 0.0058 1.3E-07 51.7 4.9 81 62-154 206-294 (421)
263 KOG3178 Hydroxyindole-O-methyl 96.4 0.019 4E-07 48.8 7.9 94 66-182 179-276 (342)
264 COG1867 TRM1 N2,N2-dimethylgua 96.3 0.022 4.7E-07 48.8 7.7 100 65-182 53-155 (380)
265 KOG2798 Putative trehalase [Ca 96.2 0.075 1.6E-06 44.7 10.2 117 63-179 149-294 (369)
266 KOG0024 Sorbitol dehydrogenase 96.1 0.016 3.4E-07 48.9 6.0 98 61-181 166-273 (354)
267 PRK09424 pntA NAD(P) transhydr 96.0 0.092 2E-06 47.4 11.1 42 62-103 162-206 (509)
268 PRK15001 SAM-dependent 23S rib 96.0 0.27 5.8E-06 42.9 13.2 139 19-185 7-146 (378)
269 COG1064 AdhP Zn-dependent alco 95.9 0.043 9.4E-07 46.8 8.0 95 61-182 163-260 (339)
270 KOG1122 tRNA and rRNA cytosine 95.9 0.21 4.4E-06 43.7 11.8 110 63-185 240-375 (460)
271 COG2961 ComJ Protein involved 95.8 0.17 3.8E-06 41.1 10.6 140 37-198 66-212 (279)
272 PF03141 Methyltransf_29: Puta 95.8 0.038 8.3E-07 49.2 7.4 119 67-209 368-493 (506)
273 PF01555 N6_N4_Mtase: DNA meth 95.8 0.028 6E-07 44.6 6.0 55 41-103 176-231 (231)
274 PF10237 N6-adenineMlase: Prob 95.7 0.073 1.6E-06 40.7 7.6 116 41-186 11-128 (162)
275 PF04672 Methyltransf_19: S-ad 95.6 0.052 1.1E-06 44.7 7.2 106 67-185 71-194 (267)
276 KOG4589 Cell division protein 95.6 0.079 1.7E-06 41.3 7.4 33 62-94 67-102 (232)
277 PF04445 SAM_MT: Putative SAM- 95.5 0.06 1.3E-06 43.6 7.1 85 66-156 77-162 (234)
278 KOG2912 Predicted DNA methylas 95.3 0.018 3.9E-07 48.4 3.4 78 69-157 107-191 (419)
279 KOG2352 Predicted spermine/spe 95.3 0.13 2.8E-06 45.6 8.9 97 66-179 50-159 (482)
280 PRK11524 putative methyltransf 95.3 0.07 1.5E-06 44.5 7.0 46 62-107 206-252 (284)
281 PLN02668 indole-3-acetate carb 95.1 0.31 6.7E-06 42.5 10.5 20 64-83 63-82 (386)
282 PRK13699 putative methylase; P 94.9 0.13 2.8E-06 41.6 7.2 46 63-108 162-208 (227)
283 KOG1331 Predicted methyltransf 94.8 0.047 1E-06 45.2 4.5 111 33-179 27-141 (293)
284 PF00145 DNA_methylase: C-5 cy 94.7 0.034 7.4E-07 46.8 3.7 69 67-155 2-72 (335)
285 PF07757 AdoMet_MTase: Predict 94.7 0.059 1.3E-06 38.1 4.1 31 64-94 58-88 (112)
286 KOG3115 Methyltransferase-like 94.7 0.25 5.3E-06 39.1 7.9 115 64-183 60-185 (249)
287 KOG1227 Putative methyltransfe 94.7 0.019 4.1E-07 47.8 1.9 47 64-110 194-243 (351)
288 PRK09880 L-idonate 5-dehydroge 94.6 0.36 7.7E-06 41.1 9.6 94 63-181 168-266 (343)
289 PF03492 Methyltransf_7: SAM d 94.4 0.58 1.3E-05 40.1 10.5 22 63-84 15-36 (334)
290 KOG2198 tRNA cytosine-5-methyl 94.4 1.2 2.6E-05 38.4 12.2 132 62-207 153-326 (375)
291 COG1063 Tdh Threonine dehydrog 94.4 0.11 2.4E-06 44.7 6.1 97 64-182 168-270 (350)
292 COG0270 Dcm Site-specific DNA 94.3 0.15 3.2E-06 43.6 6.7 42 65-106 3-46 (328)
293 KOG3350 Uncharacterized conser 94.3 0.098 2.1E-06 40.3 4.8 90 126-217 116-206 (217)
294 KOG1253 tRNA methyltransferase 94.0 0.047 1E-06 48.4 3.1 105 63-182 108-217 (525)
295 KOG4058 Uncharacterized conser 93.7 0.59 1.3E-05 35.2 7.8 93 66-179 74-170 (199)
296 cd08230 glucose_DH Glucose deh 93.6 0.38 8.3E-06 41.1 8.0 92 63-181 171-269 (355)
297 COG0286 HsdM Type I restrictio 93.5 0.97 2.1E-05 40.8 10.6 108 64-182 186-327 (489)
298 KOG3924 Putative protein methy 92.8 0.34 7.4E-06 42.0 6.3 117 62-182 190-309 (419)
299 PF07091 FmrO: Ribosomal RNA m 92.8 0.46 9.9E-06 38.8 6.7 102 65-185 106-212 (251)
300 PF03686 UPF0146: Uncharacteri 92.5 0.38 8.2E-06 35.1 5.2 43 44-96 3-46 (127)
301 TIGR00006 S-adenosyl-methyltra 92.4 0.57 1.2E-05 39.5 7.1 58 43-107 6-66 (305)
302 PRK12548 shikimate 5-dehydroge 92.4 1.1 2.3E-05 37.6 8.7 81 62-156 123-211 (289)
303 PRK11524 putative methyltransf 92.4 0.21 4.5E-06 41.7 4.4 43 141-183 24-82 (284)
304 TIGR01202 bchC 2-desacetyl-2-h 92.4 0.86 1.9E-05 38.2 8.3 84 64-181 144-231 (308)
305 PF04989 CmcI: Cephalosporin h 92.1 1.4 2.9E-05 35.1 8.5 104 64-181 32-147 (206)
306 KOG1201 Hydroxysteroid 17-beta 92.0 1.1 2.5E-05 37.5 8.2 81 60-154 33-124 (300)
307 TIGR00027 mthyl_TIGR00027 meth 92.0 0.66 1.4E-05 38.3 6.9 107 66-182 83-198 (260)
308 PRK05708 2-dehydropantoate 2-r 91.8 1.1 2.4E-05 37.7 8.3 99 66-181 3-104 (305)
309 cd08283 FDH_like_1 Glutathione 91.6 0.51 1.1E-05 41.0 6.1 42 62-103 182-227 (386)
310 cd08254 hydroxyacyl_CoA_DH 6-h 91.4 1.8 4E-05 36.2 9.2 96 62-180 163-262 (338)
311 TIGR00561 pntA NAD(P) transhyd 91.3 1.5 3.2E-05 39.8 8.8 40 63-102 162-204 (511)
312 COG1748 LYS9 Saccharopine dehy 90.8 0.51 1.1E-05 41.2 5.3 75 66-156 2-80 (389)
313 TIGR03366 HpnZ_proposed putati 90.6 2.9 6.3E-05 34.4 9.5 96 63-181 119-218 (280)
314 PRK05786 fabG 3-ketoacyl-(acyl 90.3 4 8.7E-05 32.3 9.9 78 64-155 4-92 (238)
315 PF02086 MethyltransfD12: D12 90.0 0.55 1.2E-05 38.2 4.6 45 44-95 7-51 (260)
316 TIGR02822 adh_fam_2 zinc-bindi 89.9 3 6.6E-05 35.3 9.3 89 62-181 163-254 (329)
317 TIGR03451 mycoS_dep_FDH mycoth 89.9 0.87 1.9E-05 39.0 6.0 99 62-181 174-276 (358)
318 PRK06249 2-dehydropantoate 2-r 89.8 1.9 4.1E-05 36.4 7.9 98 65-179 5-104 (313)
319 PRK13699 putative methylase; P 89.8 1.2 2.6E-05 36.0 6.3 59 141-202 17-91 (227)
320 COG1893 ApbA Ketopantoate redu 89.7 3.9 8.5E-05 34.6 9.7 99 66-181 1-101 (307)
321 PF01555 N6_N4_Mtase: DNA meth 89.0 1.3 2.8E-05 34.8 6.0 57 145-202 1-78 (231)
322 cd08281 liver_ADH_like1 Zinc-d 88.9 1.5 3.2E-05 37.8 6.7 41 62-102 189-233 (371)
323 COG1255 Uncharacterized protei 88.5 1 2.2E-05 32.3 4.4 31 66-96 15-46 (129)
324 PF10354 DUF2431: Domain of un 88.5 9.5 0.00021 29.2 10.3 46 141-186 72-130 (166)
325 PF07279 DUF1442: Protein of u 88.4 10 0.00022 30.4 10.4 103 64-185 41-152 (218)
326 PLN03154 putative allyl alcoho 88.2 3.4 7.3E-05 35.3 8.4 41 62-102 156-200 (348)
327 PF06859 Bin3: Bicoid-interact 88.0 0.22 4.8E-06 35.3 0.8 39 144-182 1-45 (110)
328 PF00107 ADH_zinc_N: Zinc-bind 87.9 0.22 4.7E-06 35.9 0.8 83 74-182 1-90 (130)
329 PF04378 RsmJ: Ribosomal RNA s 87.8 1.6 3.4E-05 35.7 5.7 113 71-197 62-180 (245)
330 TIGR00675 dcm DNA-methyltransf 87.7 0.9 2E-05 38.5 4.5 38 68-105 1-40 (315)
331 cd08239 THR_DH_like L-threonin 87.6 3.2 6.9E-05 35.0 7.9 40 62-101 161-204 (339)
332 cd05188 MDR Medium chain reduc 87.4 3.7 7.9E-05 32.9 7.9 94 63-182 133-233 (271)
333 PF02737 3HCDH_N: 3-hydroxyacy 87.2 1.8 4E-05 33.5 5.7 104 67-179 1-112 (180)
334 COG4301 Uncharacterized conser 87.1 11 0.00023 31.1 9.9 113 63-186 77-198 (321)
335 PRK06124 gluconate 5-dehydroge 86.8 14 0.0003 29.6 11.0 80 62-154 8-98 (256)
336 PF06460 NSP13: Coronavirus NS 86.6 8 0.00017 31.9 9.0 123 44-204 47-189 (299)
337 COG3392 Adenine-specific DNA m 86.4 0.98 2.1E-05 37.2 3.7 52 43-96 8-59 (330)
338 PF02558 ApbA: Ketopantoate re 86.3 5.3 0.00011 29.5 7.6 98 68-180 1-100 (151)
339 COG4798 Predicted methyltransf 86.2 5.2 0.00011 31.7 7.4 27 157-183 142-168 (238)
340 PLN02586 probable cinnamyl alc 85.9 3.4 7.5E-05 35.5 7.2 32 63-94 182-215 (360)
341 KOG2651 rRNA adenine N-6-methy 85.9 1.7 3.8E-05 37.7 5.1 31 66-96 155-186 (476)
342 PF11599 AviRa: RRNA methyltra 85.8 1.4 3.1E-05 35.2 4.3 44 64-107 51-99 (246)
343 PRK08339 short chain dehydroge 85.4 3.3 7.3E-05 33.7 6.7 80 62-153 5-94 (263)
344 PRK05867 short chain dehydroge 85.3 3.7 7.9E-05 33.1 6.8 80 63-155 7-97 (253)
345 TIGR00518 alaDH alanine dehydr 85.1 1.8 4E-05 37.6 5.1 32 63-94 165-198 (370)
346 PRK12826 3-ketoacyl-(acyl-carr 84.8 6 0.00013 31.4 7.8 80 63-156 4-95 (251)
347 PRK05854 short chain dehydroge 84.8 5.7 0.00012 33.4 7.9 83 61-154 10-103 (313)
348 PRK10309 galactitol-1-phosphat 84.8 3 6.5E-05 35.4 6.3 40 62-101 158-201 (347)
349 cd00755 YgdL_like Family of ac 84.7 6.7 0.00015 31.8 7.9 33 63-95 9-44 (231)
350 PRK08293 3-hydroxybutyryl-CoA 84.7 10 0.00023 31.4 9.4 41 66-106 4-47 (287)
351 PRK06139 short chain dehydroge 84.7 3.6 7.7E-05 35.1 6.7 79 63-154 5-94 (330)
352 KOG0725 Reductases with broad 84.2 18 0.0004 29.9 10.5 86 60-155 3-100 (270)
353 PF08468 MTS_N: Methyltransfer 84.1 3.4 7.4E-05 31.3 5.6 116 61-205 9-127 (155)
354 PRK07063 short chain dehydroge 84.1 3.5 7.5E-05 33.3 6.2 81 63-154 5-96 (260)
355 TIGR02354 thiF_fam2 thiamine b 84.0 13 0.00028 29.4 9.1 34 62-95 18-54 (200)
356 PRK07109 short chain dehydroge 83.7 15 0.00033 31.1 10.2 80 62-154 5-95 (334)
357 PRK06935 2-deoxy-D-gluconate 3 83.6 3.6 7.8E-05 33.2 6.0 79 62-153 12-100 (258)
358 PRK06701 short chain dehydroge 83.5 8.6 0.00019 31.9 8.4 79 62-153 43-133 (290)
359 PRK07819 3-hydroxybutyryl-CoA 83.5 4.9 0.00011 33.6 6.9 102 67-177 7-117 (286)
360 cd08285 NADP_ADH NADP(H)-depen 83.2 4.5 9.8E-05 34.3 6.7 97 62-179 164-264 (351)
361 PRK08862 short chain dehydroge 83.2 5.1 0.00011 32.0 6.7 77 63-152 3-91 (227)
362 TIGR02437 FadB fatty oxidation 83.1 4.3 9.2E-05 38.5 7.0 103 66-177 314-424 (714)
363 PRK08213 gluconate 5-dehydroge 82.9 6.3 0.00014 31.8 7.2 79 62-154 9-99 (259)
364 PRK07326 short chain dehydroge 82.8 12 0.00026 29.5 8.7 76 64-154 5-92 (237)
365 PRK06949 short chain dehydroge 82.5 5.1 0.00011 32.1 6.5 79 62-154 6-96 (258)
366 PRK10458 DNA cytosine methylas 82.4 3.4 7.5E-05 37.1 5.8 42 64-105 87-130 (467)
367 PRK07806 short chain dehydroge 82.4 18 0.0004 28.7 9.8 103 63-179 4-132 (248)
368 PRK06522 2-dehydropantoate 2-r 82.3 14 0.00031 30.5 9.4 95 67-180 2-99 (304)
369 PRK09242 tropinone reductase; 82.0 7.1 0.00015 31.4 7.2 82 62-154 6-98 (257)
370 PRK06125 short chain dehydroge 82.0 7.9 0.00017 31.2 7.5 80 63-154 5-91 (259)
371 PLN02178 cinnamyl-alcohol dehy 81.7 5.7 0.00012 34.4 6.8 31 64-94 178-210 (375)
372 cd01078 NAD_bind_H4MPT_DH NADP 81.6 9.8 0.00021 29.5 7.6 34 61-94 24-60 (194)
373 PRK07062 short chain dehydroge 81.6 11 0.00024 30.3 8.3 82 62-154 5-97 (265)
374 PRK08589 short chain dehydroge 81.4 8.9 0.00019 31.3 7.6 79 63-154 4-92 (272)
375 PLN02514 cinnamyl-alcohol dehy 81.2 8.7 0.00019 32.9 7.8 32 63-94 179-212 (357)
376 PF05206 TRM13: Methyltransfer 81.1 4 8.6E-05 33.7 5.4 32 63-94 17-55 (259)
377 PRK08265 short chain dehydroge 81.1 19 0.00041 29.1 9.5 76 63-154 4-90 (261)
378 PRK08324 short chain dehydroge 80.9 12 0.00025 35.4 9.1 80 62-155 419-509 (681)
379 cd01492 Aos1_SUMO Ubiquitin ac 80.9 6.8 0.00015 30.8 6.4 32 63-94 19-53 (197)
380 PF02636 Methyltransf_28: Puta 80.9 5.4 0.00012 32.5 6.1 41 65-105 19-70 (252)
381 PRK06172 short chain dehydroge 80.6 4 8.6E-05 32.8 5.2 79 63-154 5-94 (253)
382 COG2933 Predicted SAM-dependen 80.6 13 0.00029 30.9 8.0 61 39-99 186-246 (358)
383 PRK05866 short chain dehydroge 80.5 5.7 0.00012 33.0 6.3 80 62-154 37-127 (293)
384 PRK08703 short chain dehydroge 80.4 14 0.00029 29.4 8.3 42 62-104 3-49 (239)
385 PRK07097 gluconate 5-dehydroge 80.2 8.7 0.00019 31.1 7.2 81 62-155 7-98 (265)
386 PRK05876 short chain dehydroge 80.2 8 0.00017 31.8 7.0 79 63-154 4-93 (275)
387 PRK11730 fadB multifunctional 80.1 6.4 0.00014 37.4 7.1 103 66-177 314-424 (715)
388 PRK15116 sulfur acceptor prote 80.1 11 0.00024 31.3 7.7 34 62-95 27-63 (268)
389 PRK12823 benD 1,6-dihydroxycyc 80.0 6.9 0.00015 31.5 6.5 78 62-152 5-92 (260)
390 COG0686 Ald Alanine dehydrogen 79.7 8.9 0.00019 32.6 6.9 96 64-178 167-265 (371)
391 PRK08945 putative oxoacyl-(acy 79.7 12 0.00025 29.9 7.7 45 60-105 7-56 (247)
392 cd08294 leukotriene_B4_DH_like 79.7 10 0.00023 31.5 7.7 95 62-180 141-240 (329)
393 COG0541 Ffh Signal recognition 79.6 15 0.00032 32.6 8.5 106 66-187 101-227 (451)
394 COG1565 Uncharacterized conser 79.6 9 0.0002 33.1 7.1 60 42-105 59-128 (370)
395 PRK07814 short chain dehydroge 79.6 23 0.0005 28.6 9.5 78 62-153 7-96 (263)
396 PRK01438 murD UDP-N-acetylmura 79.5 15 0.00032 32.9 8.9 48 62-109 13-64 (480)
397 PRK12921 2-dehydropantoate 2-r 79.2 14 0.0003 30.7 8.2 97 67-179 2-100 (305)
398 PRK07035 short chain dehydroge 79.2 9.6 0.00021 30.5 7.1 79 62-153 5-94 (252)
399 cd08232 idonate-5-DH L-idonate 79.2 20 0.00044 30.0 9.4 93 64-180 165-261 (339)
400 PF04072 LCM: Leucine carboxyl 79.1 3.1 6.6E-05 32.2 3.9 44 66-109 80-125 (183)
401 PRK07530 3-hydroxybutyryl-CoA 78.8 9.7 0.00021 31.7 7.1 103 66-178 5-116 (292)
402 TIGR02441 fa_ox_alpha_mit fatt 78.8 4.6 0.0001 38.5 5.7 104 66-178 336-447 (737)
403 PRK09291 short chain dehydroge 78.7 8.9 0.00019 30.7 6.7 76 65-153 2-82 (257)
404 cd05285 sorbitol_DH Sorbitol d 78.4 14 0.00031 31.1 8.2 40 62-101 160-203 (343)
405 PRK06181 short chain dehydroge 78.4 17 0.00037 29.2 8.4 75 66-154 2-88 (263)
406 PRK05565 fabG 3-ketoacyl-(acyl 78.4 20 0.00044 28.2 8.7 78 63-154 3-93 (247)
407 PRK07478 short chain dehydroge 78.4 6.7 0.00015 31.5 5.9 79 63-154 4-93 (254)
408 COG4627 Uncharacterized protei 78.3 0.52 1.1E-05 35.8 -0.6 43 140-182 43-87 (185)
409 cd05278 FDH_like Formaldehyde 78.3 7.1 0.00015 32.8 6.3 40 63-102 166-209 (347)
410 PRK08644 thiamine biosynthesis 78.3 16 0.00034 29.1 7.9 34 62-95 25-61 (212)
411 cd00401 AdoHcyase S-adenosyl-L 78.1 8 0.00017 34.2 6.6 89 61-182 198-290 (413)
412 PRK07066 3-hydroxybutyryl-CoA 78.1 10 0.00023 32.3 7.1 102 66-175 8-113 (321)
413 PRK12481 2-deoxy-D-gluconate 3 78.0 12 0.00025 30.2 7.2 79 63-155 6-94 (251)
414 PRK07890 short chain dehydroge 77.8 9.5 0.00021 30.5 6.7 78 64-154 4-92 (258)
415 PRK09489 rsmC 16S ribosomal RN 77.8 43 0.00092 28.8 10.8 44 142-186 74-117 (342)
416 PRK08267 short chain dehydroge 77.6 21 0.00045 28.7 8.6 74 66-154 2-87 (260)
417 PRK06194 hypothetical protein; 77.6 6.2 0.00013 32.3 5.6 79 63-154 4-93 (287)
418 TIGR01963 PHB_DH 3-hydroxybuty 77.5 9.3 0.0002 30.4 6.5 75 66-154 2-88 (255)
419 PRK09260 3-hydroxybutyryl-CoA 77.3 8.8 0.00019 31.9 6.5 39 67-105 3-44 (288)
420 PRK08085 gluconate 5-dehydroge 77.1 12 0.00026 30.0 7.0 79 63-154 7-96 (254)
421 PRK07792 fabG 3-ketoacyl-(acyl 77.0 12 0.00026 31.3 7.2 81 61-154 8-99 (306)
422 cd01080 NAD_bind_m-THF_DH_Cycl 76.8 8.6 0.00019 29.5 5.7 34 61-94 40-76 (168)
423 PRK12937 short chain dehydroge 76.8 29 0.00063 27.4 9.2 79 63-154 3-93 (245)
424 cd08233 butanediol_DH_like (2R 76.7 7.6 0.00016 32.9 6.1 40 62-101 170-213 (351)
425 cd08261 Zn_ADH7 Alcohol dehydr 76.7 9.4 0.0002 32.1 6.6 40 62-101 157-199 (337)
426 cd08237 ribitol-5-phosphate_DH 76.5 5.3 0.00011 34.0 5.0 90 63-181 162-256 (341)
427 PRK11154 fadJ multifunctional 76.4 8.7 0.00019 36.4 6.8 103 66-177 310-421 (708)
428 PRK08303 short chain dehydroge 76.4 12 0.00025 31.5 7.0 33 62-94 5-40 (305)
429 PRK09908 xanthine dehydrogenas 76.3 3.9 8.4E-05 31.1 3.6 46 7-76 2-47 (159)
430 PRK06128 oxidoreductase; Provi 76.3 31 0.00068 28.6 9.5 80 62-154 52-144 (300)
431 COG1179 Dinucleotide-utilizing 76.2 4.1 9E-05 33.3 3.9 102 63-170 28-145 (263)
432 PF03269 DUF268: Caenorhabditi 75.8 34 0.00073 26.3 9.8 120 65-205 2-143 (177)
433 PRK08229 2-dehydropantoate 2-r 75.8 23 0.0005 30.0 8.7 99 66-179 3-105 (341)
434 PRK12475 thiamine/molybdopteri 75.7 10 0.00022 32.5 6.5 33 62-94 21-56 (338)
435 PF01488 Shikimate_DH: Shikima 75.7 11 0.00025 27.5 6.0 76 61-157 8-88 (135)
436 PRK06720 hypothetical protein; 75.7 19 0.00041 27.5 7.4 81 63-156 14-105 (169)
437 TIGR02356 adenyl_thiF thiazole 75.5 8 0.00017 30.5 5.4 34 62-95 18-54 (202)
438 cd08255 2-desacetyl-2-hydroxye 75.4 24 0.00052 28.6 8.5 91 62-180 95-189 (277)
439 COG0863 DNA modification methy 75.4 14 0.0003 30.5 7.2 48 62-109 220-268 (302)
440 cd08231 MDR_TM0436_like Hypoth 75.4 21 0.00046 30.3 8.5 38 64-101 177-218 (361)
441 PRK07791 short chain dehydroge 75.3 15 0.00033 30.3 7.3 80 63-155 4-103 (286)
442 PRK08277 D-mannonate oxidoredu 75.2 8.6 0.00019 31.4 5.8 79 62-153 7-96 (278)
443 PRK07877 hypothetical protein; 75.1 8.4 0.00018 36.6 6.2 34 62-95 104-140 (722)
444 cd08293 PTGR2 Prostaglandin re 75.0 7.9 0.00017 32.6 5.7 37 66-102 156-197 (345)
445 PRK06113 7-alpha-hydroxysteroi 74.9 17 0.00036 29.2 7.4 80 62-154 8-98 (255)
446 TIGR03206 benzo_BadH 2-hydroxy 74.9 9.6 0.00021 30.3 5.9 76 64-153 2-89 (250)
447 PRK07102 short chain dehydroge 74.9 14 0.00031 29.3 7.0 74 66-152 2-84 (243)
448 PRK12749 quinate/shikimate deh 74.6 34 0.00074 28.6 9.2 33 62-94 121-156 (288)
449 PRK07523 gluconate 5-dehydroge 74.6 16 0.00035 29.2 7.2 80 62-155 7-98 (255)
450 COG3315 O-Methyltransferase in 74.5 11 0.00025 31.7 6.4 108 66-182 94-210 (297)
451 PRK07666 fabG 3-ketoacyl-(acyl 73.9 9.7 0.00021 30.2 5.7 77 63-153 5-93 (239)
452 PRK07774 short chain dehydroge 73.8 11 0.00024 29.9 6.1 79 63-155 4-94 (250)
453 PRK08328 hypothetical protein; 73.6 16 0.00036 29.4 6.9 33 62-94 24-59 (231)
454 cd08265 Zn_ADH3 Alcohol dehydr 73.5 14 0.0003 31.9 6.9 33 62-94 201-236 (384)
455 KOG2539 Mitochondrial/chloropl 73.4 9.5 0.00021 34.1 5.7 111 62-183 198-317 (491)
456 PF05050 Methyltransf_21: Meth 73.4 11 0.00025 27.7 5.7 40 70-109 1-49 (167)
457 PF07669 Eco57I: Eco57I restri 73.4 24 0.00053 24.6 7.0 62 144-207 2-80 (106)
458 PRK09186 flagellin modificatio 73.1 11 0.00023 30.2 5.8 78 64-152 3-91 (256)
459 PRK07904 short chain dehydroge 73.0 14 0.00029 29.9 6.4 79 64-154 7-97 (253)
460 PRK07831 short chain dehydroge 72.9 20 0.00044 28.8 7.4 83 61-154 13-107 (262)
461 PLN02545 3-hydroxybutyryl-CoA 72.8 15 0.00032 30.6 6.7 41 66-106 5-48 (295)
462 KOG1099 SAM-dependent methyltr 72.6 3 6.5E-05 33.8 2.3 95 63-179 39-161 (294)
463 PRK05875 short chain dehydroge 72.6 11 0.00025 30.5 5.9 80 63-153 5-95 (276)
464 PRK08416 7-alpha-hydroxysteroi 72.5 21 0.00045 28.8 7.4 79 62-152 5-95 (260)
465 PRK07889 enoyl-(acyl carrier p 72.4 12 0.00027 30.2 6.0 33 62-94 4-41 (256)
466 PRK06718 precorrin-2 dehydroge 72.3 29 0.00062 27.4 7.9 32 62-93 7-40 (202)
467 TIGR01832 kduD 2-deoxy-D-gluco 72.1 25 0.00054 27.9 7.7 78 63-154 3-90 (248)
468 PRK01747 mnmC bifunctional tRN 72.0 35 0.00076 32.0 9.6 59 143-207 165-227 (662)
469 PLN02662 cinnamyl-alcohol dehy 72.0 15 0.00034 30.5 6.7 77 64-152 3-84 (322)
470 cd00757 ThiF_MoeB_HesA_family 72.0 11 0.00023 30.3 5.5 33 62-94 18-53 (228)
471 cd01487 E1_ThiF_like E1_ThiF_l 71.9 36 0.00078 26.1 8.2 28 67-94 1-31 (174)
472 PRK05872 short chain dehydroge 71.9 16 0.00035 30.3 6.7 81 61-155 5-96 (296)
473 cd08279 Zn_ADH_class_III Class 71.8 38 0.00082 28.9 9.2 33 62-94 180-215 (363)
474 PLN02989 cinnamyl-alcohol dehy 71.7 13 0.00028 31.1 6.2 78 64-153 4-86 (325)
475 PLN02253 xanthoxin dehydrogena 71.6 12 0.00025 30.6 5.8 79 61-153 14-103 (280)
476 KOG0822 Protein kinase inhibit 71.6 14 0.00031 33.6 6.4 96 66-178 369-475 (649)
477 PRK06197 short chain dehydroge 71.2 24 0.00051 29.3 7.6 83 61-154 12-105 (306)
478 cd01075 NAD_bind_Leu_Phe_Val_D 71.0 16 0.00035 28.7 6.1 42 61-102 24-68 (200)
479 TIGR03201 dearomat_had 6-hydro 71.0 11 0.00024 32.0 5.6 41 62-102 164-207 (349)
480 PRK12939 short chain dehydroge 71.0 18 0.00038 28.7 6.6 78 62-153 4-93 (250)
481 PF03721 UDPG_MGDP_dh_N: UDP-g 70.9 8.4 0.00018 30.0 4.5 103 67-182 2-121 (185)
482 PRK06130 3-hydroxybutyryl-CoA 70.9 21 0.00045 29.9 7.2 40 66-105 5-47 (311)
483 PRK06138 short chain dehydroge 70.6 13 0.00029 29.5 5.8 78 63-154 3-91 (252)
484 cd08295 double_bond_reductase_ 70.6 33 0.00071 28.8 8.5 41 62-102 149-193 (338)
485 COG1062 AdhC Zn-dependent alco 70.6 9.2 0.0002 32.9 4.8 42 62-103 183-228 (366)
486 PRK08226 short chain dehydroge 70.5 21 0.00045 28.7 7.0 78 63-154 4-92 (263)
487 PRK06114 short chain dehydroge 70.2 27 0.00059 27.9 7.6 80 62-155 5-97 (254)
488 PRK07677 short chain dehydroge 70.1 21 0.00045 28.6 6.9 75 65-152 1-86 (252)
489 PRK07985 oxidoreductase; Provi 70.1 60 0.0013 26.8 9.8 79 62-153 46-137 (294)
490 PRK05650 short chain dehydroge 69.9 12 0.00026 30.4 5.5 76 66-154 1-87 (270)
491 PRK07576 short chain dehydroge 69.7 22 0.00048 28.8 7.0 77 63-152 7-94 (264)
492 cd01483 E1_enzyme_family Super 69.7 40 0.00086 24.6 7.8 28 67-94 1-31 (143)
493 COG0604 Qor NADPH:quinone redu 69.7 21 0.00046 30.4 7.0 99 62-182 140-242 (326)
494 PRK08217 fabG 3-ketoacyl-(acyl 69.7 22 0.00048 28.1 6.9 78 63-153 3-91 (253)
495 PRK06940 short chain dehydroge 69.7 53 0.0012 26.8 9.3 76 65-155 2-87 (275)
496 cd08263 Zn_ADH10 Alcohol dehyd 69.6 24 0.00051 30.2 7.4 97 63-180 186-286 (367)
497 PRK06914 short chain dehydroge 69.4 22 0.00048 28.9 7.0 80 64-154 2-91 (280)
498 TIGR02279 PaaC-3OHAcCoADH 3-hy 69.4 15 0.00033 33.3 6.4 42 66-107 6-50 (503)
499 PLN02740 Alcohol dehydrogenase 69.0 12 0.00026 32.3 5.5 41 62-102 196-240 (381)
500 cd08242 MDR_like Medium chain 68.9 45 0.00098 27.6 8.9 88 62-179 153-243 (319)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.97 E-value=1.8e-31 Score=206.85 Aligned_cols=167 Identities=39% Similarity=0.649 Sum_probs=103.6
Q ss_pred CeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhh
Q 027594 20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEV 97 (221)
Q Consensus 20 ~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~ 97 (221)
+..+.|.++. ..++|.++|+++.+|++||.++.... +.+...++++|||||||+|++|++++++ +++|++||++++
T Consensus 3 ~~~l~i~e~~-~~~~G~~vW~aa~~La~~l~~~~~~~-~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~ 80 (173)
T PF10294_consen 3 NKTLQIEEDW-GDGTGGKVWPAALVLARYLLSHSESE-FNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEV 80 (173)
T ss_dssp ---------------------HHHHHHHHHHH--------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-H
T ss_pred cccccccccc-ccCCcEEEechHHHHHHHHHHhcccc-cchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchh
Confidence 4567788877 44899999999999999999853110 1145778999999999999999999998 568999999779
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeE
Q 027594 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT 176 (221)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~-~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~ 176 (221)
++.++.|++.|+.. ...++.+..++|++..... ....+||+|+++|++|+.+.+++|++++.+++++++.
T Consensus 81 l~~l~~Ni~~N~~~---------~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 81 LELLRRNIELNGSL---------LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp HHHHHHHHHTT-----------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred hHHHHHHHHhcccc---------ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999731 1468999999999853221 2246899999999999999999999999999999999
Q ss_pred EEEEEEecChhHHHHHHHHHhc
Q 027594 177 ILLGYEIRSTSVHEQMLQMWKS 198 (221)
Q Consensus 177 ~~i~~~~r~~~~~~~~~~~~~~ 198 (221)
++++++.|... .+.|++++++
T Consensus 152 vl~~~~~R~~~-~~~F~~~~~k 172 (173)
T PF10294_consen 152 VLLAYKRRRKS-EQEFFDRLKK 172 (173)
T ss_dssp EEEEEE-S-TG-GCHHHHHH--
T ss_pred EEEEeCEecHH-HHHHHHHhhh
Confidence 99999988654 4678888764
No 2
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.83 E-value=1.2e-19 Score=150.74 Aligned_cols=154 Identities=21% Similarity=0.338 Sum_probs=115.5
Q ss_pred cCeEEEEeeCCC-CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-h
Q 027594 19 LGHQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-I 95 (221)
Q Consensus 19 ~~~~~~i~~~~~-~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~ 95 (221)
.+.++.|..+|+ +|++|.+ +++.+..++|.+. ..++++|||+|||||+++++++++||+ |+++|+ +
T Consensus 126 ~~~~~~I~idPg~AFGTG~H--~TT~lcl~~l~~~---------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp 194 (295)
T PF06325_consen 126 PPDEIVIEIDPGMAFGTGHH--PTTRLCLELLEKY---------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDP 194 (295)
T ss_dssp STTSEEEEESTTSSS-SSHC--HHHHHHHHHHHHH---------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSC
T ss_pred CCCcEEEEECCCCcccCCCC--HHHHHHHHHHHHh---------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCH
Confidence 456778888885 5777766 8899999999866 457889999999999999999999995 999998 5
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCe
Q 027594 96 EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT 175 (221)
Q Consensus 96 ~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g 175 (221)
.+++.+++|++.|++ ..++.+. .... ....+||+|++| -..+.+..++..+.++++|||
T Consensus 195 ~Av~~a~~N~~~N~~-----------~~~~~v~-----~~~~--~~~~~~dlvvAN---I~~~vL~~l~~~~~~~l~~~G 253 (295)
T PF06325_consen 195 LAVEAARENAELNGV-----------EDRIEVS-----LSED--LVEGKFDLVVAN---ILADVLLELAPDIASLLKPGG 253 (295)
T ss_dssp HHHHHHHHHHHHTT------------TTCEEES-----CTSC--TCCS-EEEEEEE---S-HHHHHHHHHHCHHHEEEEE
T ss_pred HHHHHHHHHHHHcCC-----------CeeEEEE-----Eecc--cccccCCEEEEC---CCHHHHHHHHHHHHHhhCCCC
Confidence 699999999999997 3445432 1111 124799999998 333446678888888999999
Q ss_pred EEEEEEEecChhHHHHHHHHHhcCCeEEEec
Q 027594 176 TILLGYEIRSTSVHEQMLQMWKSNFNVKLVP 206 (221)
Q Consensus 176 ~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~ 206 (221)
.++++....... +.+.+.++++|++.+..
T Consensus 254 ~lIlSGIl~~~~--~~v~~a~~~g~~~~~~~ 282 (295)
T PF06325_consen 254 YLILSGILEEQE--DEVIEAYKQGFELVEER 282 (295)
T ss_dssp EEEEEEEEGGGH--HHHHHHHHTTEEEEEEE
T ss_pred EEEEccccHHHH--HHHHHHHHCCCEEEEEE
Confidence 999988776653 55666666688875544
No 3
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.82 E-value=2.1e-19 Score=144.63 Aligned_cols=158 Identities=23% Similarity=0.286 Sum_probs=125.7
Q ss_pred EcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-
Q 027594 18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ- 94 (221)
Q Consensus 18 ~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~- 94 (221)
..++.+.|.|++....+|.. +++|++|.... ..++|||||||+|++++++|++ . ++++++|+
T Consensus 13 ~~~~~~~I~q~~~~~~~~~D----aiLL~~~~~~~-----------~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq 77 (248)
T COG4123 13 FTFKQFFIIQDRCGFRYGTD----AILLAAFAPVP-----------KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQ 77 (248)
T ss_pred ccccceEEEeCCCccccccH----HHHHHhhcccc-----------cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeC
Confidence 35788999999987777766 99999999632 3679999999999999999976 4 78999997
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc----------------
Q 027594 95 IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------------- 158 (221)
Q Consensus 95 ~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~---------------- 158 (221)
+++.+.|++|++.|.+ .+++++.+.|..+..... ...+||+|++|||+|...
T Consensus 78 ~~~a~~A~~nv~ln~l-----------~~ri~v~~~Di~~~~~~~-~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~ 145 (248)
T COG4123 78 EEAAEMAQRNVALNPL-----------EERIQVIEADIKEFLKAL-VFASFDLIICNPPYFKQGSRLNENPLRAIARHEI 145 (248)
T ss_pred HHHHHHHHHHHHhCcc-----------hhceeEehhhHHHhhhcc-cccccCEEEeCCCCCCCccccCcChhhhhhhhhh
Confidence 5699999999999987 688999997776554332 234799999999998522
Q ss_pred --CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhc-CCeEEEe
Q 027594 159 --LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLV 205 (221)
Q Consensus 159 --~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~-~f~v~~v 205 (221)
.++.+++...++|+|+|.++++++.. -...+++.++. +|.+.++
T Consensus 146 ~~~le~~i~~a~~~lk~~G~l~~V~r~e---rl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 146 TLDLEDLIRAAAKLLKPGGRLAFVHRPE---RLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred cCCHHHHHHHHHHHccCCCEEEEEecHH---HHHHHHHHHHhcCCCceEE
Confidence 47889999999999999999987642 24566676665 6665433
No 4
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.82 E-value=6e-19 Score=136.44 Aligned_cols=136 Identities=26% Similarity=0.335 Sum_probs=105.6
Q ss_pred EEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhH
Q 027594 22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVL 98 (221)
Q Consensus 22 ~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~--v~~~D~-~~~l 98 (221)
++++.+.|+.+..+ .+=.++.+|++++..+ ++++|||||||+|.+|+.+++.+.. |+++|. ++++
T Consensus 1 ~~~~~~~~gvFs~~-~~d~~t~lL~~~l~~~-----------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~ 68 (170)
T PF05175_consen 1 ELEFITHPGVFSPP-RLDAGTRLLLDNLPKH-----------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL 68 (170)
T ss_dssp EEEEEEETTSTTTT-SHHHHHHHHHHHHHHH-----------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH
T ss_pred CEEEEECCCeeCCC-CCCHHHHHHHHHHhhc-----------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence 47888889877632 3345688999999865 5679999999999999999998765 999998 6699
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc-----CHHHHHHHHHHhcCC
Q 027594 99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGP 173 (221)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~-----~~~~l~~~~~~ll~~ 173 (221)
+.+++|++.|+. +++++...|+.+.. ...+||+|++|+|++... ....++....++|+|
T Consensus 69 ~~a~~n~~~n~~------------~~v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~ 132 (170)
T PF05175_consen 69 ELAKRNAERNGL------------ENVEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP 132 (170)
T ss_dssp HHHHHHHHHTTC------------TTEEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHhcCc------------cccccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccC
Confidence 999999999986 23777776654332 257999999999987643 378889999999999
Q ss_pred CeEEEEEEEecC
Q 027594 174 KTTILLGYEIRS 185 (221)
Q Consensus 174 ~g~~~i~~~~r~ 185 (221)
||.++++.....
T Consensus 133 ~G~l~lv~~~~~ 144 (170)
T PF05175_consen 133 GGRLFLVINSHL 144 (170)
T ss_dssp EEEEEEEEETTS
T ss_pred CCEEEEEeecCC
Confidence 999998776433
No 5
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.5e-19 Score=146.89 Aligned_cols=157 Identities=24% Similarity=0.320 Sum_probs=117.8
Q ss_pred eEEEEeeCCC-CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhh
Q 027594 21 HQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEV 97 (221)
Q Consensus 21 ~~~~i~~~~~-~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~ 97 (221)
.++.|..+|| .+++|++ +.+.+..++|.+. ..++++|||+|||+|+++++++++||+ |+++|+ |.+
T Consensus 129 ~~~~i~lDPGlAFGTG~H--pTT~lcL~~Le~~---------~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~A 197 (300)
T COG2264 129 DELNIELDPGLAFGTGTH--PTTSLCLEALEKL---------LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQA 197 (300)
T ss_pred CceEEEEccccccCCCCC--hhHHHHHHHHHHh---------hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHH
Confidence 5778888985 4666655 8888999999865 448899999999999999999999996 999998 559
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
++.++.|+++|+.. ..++... ...... ....+||+|++|= --+-+..|...+.++++|||.+
T Consensus 198 V~aa~eNa~~N~v~-----------~~~~~~~---~~~~~~-~~~~~~DvIVANI---LA~vl~~La~~~~~~lkpgg~l 259 (300)
T COG2264 198 VEAARENARLNGVE-----------LLVQAKG---FLLLEV-PENGPFDVIVANI---LAEVLVELAPDIKRLLKPGGRL 259 (300)
T ss_pred HHHHHHHHHHcCCc-----------hhhhccc---ccchhh-cccCcccEEEehh---hHHHHHHHHHHHHHHcCCCceE
Confidence 99999999999862 1111111 111111 1246999999982 2344668888899999999999
Q ss_pred EEEEEecChhHHHHHHHHH-hcCCeEEEecCC
Q 027594 178 LLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA 208 (221)
Q Consensus 178 ~i~~~~r~~~~~~~~~~~~-~~~f~v~~v~~~ 208 (221)
+++....... +...+.+ +.+|.+.++...
T Consensus 260 IlSGIl~~q~--~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 260 ILSGILEDQA--ESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred EEEeehHhHH--HHHHHHHHhCCCeEeEEEec
Confidence 9988766553 5666666 569988766554
No 6
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.80 E-value=9.9e-19 Score=140.76 Aligned_cols=168 Identities=32% Similarity=0.480 Sum_probs=128.7
Q ss_pred CCcccceecchHHHHHHHHhhcccCCCCCCCCC-----CCCeEEEeCCCccHHHHHHHH-hCCEEEEecchhhHHHHHHH
Q 027594 31 SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKL-----KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRN 104 (221)
Q Consensus 31 ~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~-----~~~~vLelGcG~G~~~l~~a~-~ga~v~~~D~~~~l~~~~~n 104 (221)
.-.....+|+++..++.++..+...... .... +.++|||||+|||++|+.+|. .++.|+.+|.++.+..++.|
T Consensus 49 ~~~~~~~~w~~~~~la~~~~~~~~~~~~-~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~ 127 (248)
T KOG2793|consen 49 EQGISAYLWSCATTLAQPLWERRRDSEL-TATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFN 127 (248)
T ss_pred ccceeeEEeehhhccchhhhhhhcCchh-hhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHh
Confidence 3567889999999999999877431000 0011 345699999999999999998 57899999999988888888
Q ss_pred HHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC-ccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 105 VEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 105 ~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~-fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
...|+....+. ...+.+..++|+.........+. ||+|+++|++|.++..+.++.+++.++..++.++++++.
T Consensus 128 ~~~~~~~l~~~------g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 128 RDKNNIALNQL------GGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred hhhhhhhhhhc------CCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 77776543211 24789999999998876554555 999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHh---cCCeEEEe
Q 027594 184 RSTSVHEQMLQMWK---SNFNVKLV 205 (221)
Q Consensus 184 r~~~~~~~~~~~~~---~~f~v~~v 205 (221)
|.....+.+.-.++ ..|++...
T Consensus 202 r~~~~~~~~~~~~~~~~~~~~v~~~ 226 (248)
T KOG2793|consen 202 RRDAAWEIEVLLFKKDLKIFDVVQE 226 (248)
T ss_pred ccchHHHHHHHHhhhhhccceeeeE
Confidence 98754444333332 35555433
No 7
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.78 E-value=3.7e-19 Score=136.39 Aligned_cols=157 Identities=23% Similarity=0.375 Sum_probs=121.5
Q ss_pred CCCCCCCcceEEEEEcCeEEEEeeCCC--------CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCc
Q 027594 4 DRLNSPSTSVINLEVLGHQLQFSQDPN--------SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC 75 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~ 75 (221)
++...|.-.++.+...+..-...+... ...++...|.++..+|+|+..+ |...+||+|||+|+|+
T Consensus 18 ~~~p~p~~Pe~rl~la~~~~~l~~~~~e~l~~ig~pPpfwa~~WagG~~lAR~i~~~-------PetVrgkrVLd~gags 90 (218)
T COG3897 18 GLLPPPHVPEIRLHLADEAHELWDRAKEELRLIGLPPPFWAFAWAGGQVLARYIDDH-------PETVRGKRVLDLGAGS 90 (218)
T ss_pred ccCCCCCCchhheeecccccchHhHhHHHHHhcCCCchHHHHHHhhhHHHHHHHhcC-------ccccccceeeeccccc
Confidence 344455555566655443322222211 2347889999999999999999 8899999999999999
Q ss_pred cHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEccc
Q 027594 76 GVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV 153 (221)
Q Consensus 76 G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~ 153 (221)
|++++++++.|++ |+++|+ +..++.++.|++.|+. .+.+...|... .+..||+|+++|+
T Consensus 91 gLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-------------~i~~~~~d~~g------~~~~~Dl~LagDl 151 (218)
T COG3897 91 GLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-------------SILFTHADLIG------SPPAFDLLLAGDL 151 (218)
T ss_pred ChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-------------eeEEeeccccC------CCcceeEEEeece
Confidence 9999999999996 999998 6689999999999985 45555533322 3678999999999
Q ss_pred ccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 154 VYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 154 ~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
+|+......++.+..++...|-.+++..+.|..
T Consensus 152 fy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 152 FYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred ecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 999999999999777777777778777777664
No 8
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=4.2e-19 Score=131.99 Aligned_cols=154 Identities=26% Similarity=0.370 Sum_probs=118.1
Q ss_pred cccc-eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCC-ccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHH
Q 027594 33 HLGT-TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAG-CGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 33 ~~g~-~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG-~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~ 107 (221)
++|. .+||++.+||.++.++ +..++|++|||||.| ||+.|+.+|... ..|..||. .++++..++-.-.
T Consensus 4 ntgnvciwpseeala~~~l~~-------~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~ 76 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRD-------PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNS 76 (201)
T ss_pred CCCcEEecccHHHHHHHHHhc-------hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhc
Confidence 3454 5999999999999988 678899999999999 499999998654 46999997 5589888887777
Q ss_pred hhhccccCCCCCCCCCceEEEEEEecCCCC-ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 108 NTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 108 n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
|... ....+. .+.|..... .......||+|+++||+|..+..+.|++++.++|+|.|..++..+.|..
T Consensus 77 n~~s---------~~tsc~--vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 77 NMAS---------SLTSCC--VLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred cccc---------ccceeh--hhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 6431 012232 333332221 2233568999999999999999999999999999999998887776655
Q ss_pred hHHHHHHHHHh-cCCeEEEe
Q 027594 187 SVHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 187 ~~~~~~~~~~~-~~f~v~~v 205 (221)
..++|.+..+ .+|.+..-
T Consensus 146 -sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 146 -SLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred -hHHHHHHHHHhceeEEEec
Confidence 5788998886 48888643
No 9
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.76 E-value=1.6e-18 Score=137.62 Aligned_cols=109 Identities=21% Similarity=0.265 Sum_probs=92.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++|++|||+|||-|+++..+|++|++||++|. +++++.++..+.++++ .+.+... ..+++...
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv-------------~i~y~~~---~~edl~~~ 121 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV-------------NIDYRQA---TVEDLASA 121 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc-------------cccchhh---hHHHHHhc
Confidence 68999999999999999999999999999998 5599999999998876 2333331 11222223
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 187 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~ 187 (221)
.++||+|++.+++.|.++.+.+++.|.+++||||.++++..+|+..
T Consensus 122 ~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 122 GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 4799999999999999999999999999999999999999998853
No 10
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.74 E-value=1.5e-16 Score=136.64 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=109.4
Q ss_pred ceEEEEEcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEE
Q 027594 12 SVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNV 89 (221)
Q Consensus 12 ~~~~~~~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g--a~v 89 (221)
..++..+.+..+++...++.+..+ .+=.++.+|.+++.. . .+.+|||||||+|.+++.+++.+ ++|
T Consensus 188 ~~~~~~~~~~~~~~~~~~gVFs~~-~LD~GtrllL~~lp~----------~-~~~~VLDLGCGtGvi~i~la~~~P~~~V 255 (378)
T PRK15001 188 QTVSWKLEGTDWTIHNHANVFSRT-GLDIGARFFMQHLPE----------N-LEGEIVDLGCGNGVIGLTLLDKNPQAKV 255 (378)
T ss_pred ceeEEEEcCceEEEEecCCccCCC-CcChHHHHHHHhCCc----------c-cCCeEEEEeccccHHHHHHHHhCCCCEE
Confidence 356777889999999999877633 455666666666632 2 23599999999999999999874 689
Q ss_pred EEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC-----cCHHHH
Q 027594 90 ITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----HLLEPL 163 (221)
Q Consensus 90 ~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~-----~~~~~l 163 (221)
+++|.+ .+++.+++|++.|+.. ...++++...|. ... ....+||+|++|++++.. .....+
T Consensus 256 ~~vD~S~~Av~~A~~N~~~n~~~---------~~~~v~~~~~D~---l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l 322 (378)
T PRK15001 256 VFVDESPMAVASSRLNVETNMPE---------ALDRCEFMINNA---LSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEM 322 (378)
T ss_pred EEEECCHHHHHHHHHHHHHcCcc---------cCceEEEEEccc---ccc-CCCCCEEEEEECcCcccCccCCHHHHHHH
Confidence 999985 5999999999988641 012455554332 111 123589999999997653 235678
Q ss_pred HHHHHHhcCCCeEEEEEEEecChh
Q 027594 164 LQTIFALSGPKTTILLGYEIRSTS 187 (221)
Q Consensus 164 ~~~~~~ll~~~g~~~i~~~~r~~~ 187 (221)
+..+.++|+|||.++++. .|...
T Consensus 323 ~~~a~~~LkpGG~L~iV~-nr~l~ 345 (378)
T PRK15001 323 FHHARRCLKINGELYIVA-NRHLD 345 (378)
T ss_pred HHHHHHhcccCCEEEEEE-ecCcC
Confidence 888999999999999985 44443
No 11
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.74 E-value=1.5e-16 Score=123.92 Aligned_cols=138 Identities=20% Similarity=0.224 Sum_probs=103.3
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
+.+|.+++.. .++++|||+|||+|..++.++..+.+|+++|. +++++.+++|++.++.
T Consensus 8 ~~~l~~~l~~-----------~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------- 66 (179)
T TIGR00537 8 SLLLEANLRE-----------LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV---------- 66 (179)
T ss_pred HHHHHHHHHh-----------cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC----------
Confidence 4566666642 35678999999999999999998889999998 6699999999988763
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC---------------------HHHHHHHHHHhcCCCeEEEE
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------LEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~---------------------~~~l~~~~~~ll~~~g~~~i 179 (221)
++.+...|+.+. ...+||+|+++++++.... ...+++.+.++|+|||.+++
T Consensus 67 ---~~~~~~~d~~~~-----~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 67 ---GLDVVMTDLFKG-----VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred ---ceEEEEcccccc-----cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 466666665432 2358999999988764321 46688899999999999988
Q ss_pred EEEecChhHHHHHHHHHh-cCCeEEEecCCCC
Q 027594 180 GYEIRSTSVHEQMLQMWK-SNFNVKLVPKAKE 210 (221)
Q Consensus 180 ~~~~r~~~~~~~~~~~~~-~~f~v~~v~~~~~ 210 (221)
........ ..+++.++ .+|.++.+....+
T Consensus 139 ~~~~~~~~--~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 139 IQSSLNGE--PDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred EEeccCCh--HHHHHHHHhCCCeEEEEEEeec
Confidence 77654422 44555554 5898887766554
No 12
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=2.4e-16 Score=129.49 Aligned_cols=158 Identities=22% Similarity=0.278 Sum_probs=111.7
Q ss_pred EcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecch
Q 027594 18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQI 95 (221)
Q Consensus 18 ~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~~ 95 (221)
..+.++++...|+.+..+ .+-.++.+|.+-+. ....+ +|||||||.|.+|+.+++... ++|++|.+
T Consensus 124 ~~~~~~~~~t~pGVFS~~-~lD~GS~lLl~~l~----------~~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn 191 (300)
T COG2813 124 LLGHELTFKTLPGVFSRD-KLDKGSRLLLETLP----------PDLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVN 191 (300)
T ss_pred hccCceEEEeCCCCCcCC-CcChHHHHHHHhCC----------ccCCC-cEEEeCCCccHHHHHHHHhCCCCeEEEEecC
Confidence 348899999999877644 44455666666553 33344 999999999999999999864 79999986
Q ss_pred h-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC-----HHHHHHHHHH
Q 027594 96 E-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----LEPLLQTIFA 169 (221)
Q Consensus 96 ~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~-----~~~l~~~~~~ 169 (221)
. +++.+++|+..|+. ++..+... +.. .. ...+||.||+|||++.-.. ...++....+
T Consensus 192 ~~Av~~ar~Nl~~N~~------------~~~~v~~s---~~~-~~-v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~ 254 (300)
T COG2813 192 ARAVESARKNLAANGV------------ENTEVWAS---NLY-EP-VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAAR 254 (300)
T ss_pred HHHHHHHHHhHHHcCC------------CccEEEEe---ccc-cc-ccccccEEEeCCCccCCcchhHHHHHHHHHHHHH
Confidence 5 99999999999986 22222221 111 11 2348999999999996322 3368888899
Q ss_pred hcCCCeEEEEEEEecChhHHHHHHHHHhcCC-eEEEecCCC
Q 027594 170 LSGPKTTILLGYEIRSTSVHEQMLQMWKSNF-NVKLVPKAK 209 (221)
Q Consensus 170 ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f-~v~~v~~~~ 209 (221)
.|++||.++|+.. +...... .+++.| .++.+....
T Consensus 255 ~L~~gGeL~iVan-~~l~y~~----~L~~~Fg~v~~la~~~ 290 (300)
T COG2813 255 HLKPGGELWIVAN-RHLPYEK----KLKELFGNVEVLAKNG 290 (300)
T ss_pred hhccCCEEEEEEc-CCCChHH----HHHHhcCCEEEEEeCC
Confidence 9999999999876 5544333 334444 356555544
No 13
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.72 E-value=2.6e-16 Score=131.50 Aligned_cols=156 Identities=20% Similarity=0.301 Sum_probs=111.7
Q ss_pred CeEEEEeeCCC-CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hh
Q 027594 20 GHQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IE 96 (221)
Q Consensus 20 ~~~~~i~~~~~-~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~ 96 (221)
...+.|..+|+ .+++|.+ +.+.+..+++... ..++++|||+|||+|.+++.++++|+ +|+++|+ +.
T Consensus 125 ~~~~~i~ldpg~aFgtG~h--~tt~l~l~~l~~~---------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~ 193 (288)
T TIGR00406 125 EDALIIMLDPGLAFGTGTH--PTTSLCLEWLEDL---------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPL 193 (288)
T ss_pred CCcEEEEECCCCcccCCCC--HHHHHHHHHHHhh---------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHH
Confidence 45567777884 3556544 7777777777643 33678999999999999999999887 6999998 56
Q ss_pred hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeE
Q 027594 97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT 176 (221)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~ 176 (221)
+++.+++|+..|+. ..++.+...+ . ......+||+|+++-+ ...+..++..+.++|+|||.
T Consensus 194 al~~a~~n~~~n~~-----------~~~~~~~~~~---~--~~~~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~ 254 (288)
T TIGR00406 194 AVESARKNAELNQV-----------SDRLQVKLIY---L--EQPIEGKADVIVANIL---AEVIKELYPQFSRLVKPGGW 254 (288)
T ss_pred HHHHHHHHHHHcCC-----------CcceEEEecc---c--ccccCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcE
Confidence 99999999999875 2344444322 1 1123568999998743 34456788999999999999
Q ss_pred EEEEEEecChhHHHHHHHHHhcCCeEEEecC
Q 027594 177 ILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK 207 (221)
Q Consensus 177 ~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~ 207 (221)
++++...... ...+.+.++++|++..+..
T Consensus 255 li~sgi~~~~--~~~v~~~~~~~f~~~~~~~ 283 (288)
T TIGR00406 255 LILSGILETQ--AQSVCDAYEQGFTVVEIRQ 283 (288)
T ss_pred EEEEeCcHhH--HHHHHHHHHccCceeeEec
Confidence 9997765443 3555666665687765543
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.72 E-value=4.3e-17 Score=117.04 Aligned_cols=104 Identities=23% Similarity=0.286 Sum_probs=83.5
Q ss_pred CCCeEEEeCCCccHHHHHHHH--hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~--~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||||||+|..++.+++ .+++|+++|+ +++++.+++++..... .+++++...|+ .. ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~i~~~~~d~-~~--~~~ 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----------SDRITFVQGDA-EF--DPD 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----------TTTEEEEESCC-HG--GTT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECcc-cc--Ccc
Confidence 468999999999999999998 6889999998 6699999999966554 57899999777 11 112
Q ss_pred cCCCccEEEEcc-cccC---CcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 141 VAPPFDYIIGTD-VVYA---EHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 141 ~~~~fD~Vi~~d-~~y~---~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
...+||+|+++. +..+ .+....+++.+.++|+|||++++..
T Consensus 67 ~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 356799999988 3321 2456788999999999999998864
No 15
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.69 E-value=3.2e-16 Score=132.23 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=89.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||||||+|.++..+++.|++|+++|. +++++.+++++..+.. ..++.+...+. ..+...
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----------~~~i~~~~~da---e~l~~~ 195 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV-----------TSTIEYLCTTA---EKLADE 195 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-----------ccceeEEecCH---HHhhhc
Confidence 46789999999999999999999999999998 6699999988765442 24567766433 233334
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
.++||+|++.+++++..+...+++.+.++|+|||.+++....+.
T Consensus 196 ~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 196 GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred cCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 57899999999999999999999999999999999999876543
No 16
>PRK14967 putative methyltransferase; Provisional
Probab=99.69 E-value=2.9e-15 Score=120.71 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=107.7
Q ss_pred EEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHH
Q 027594 23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL 100 (221)
Q Consensus 23 ~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~ 100 (221)
+++.+.++.+.... .+.++++++... ...++.+|||+|||+|..++.+++.++ +|+++|. +.+++.
T Consensus 7 ~~~~~~~g~~~p~~----ds~~l~~~l~~~--------~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~ 74 (223)
T PRK14967 7 DALLRAPGVYRPQE----DTQLLADALAAE--------GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS 74 (223)
T ss_pred ceeecCCCCcCCCC----cHHHHHHHHHhc--------ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 34555554333222 367788887643 234578999999999999999998876 8999998 569999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC---------------------
Q 027594 101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------- 159 (221)
Q Consensus 101 ~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~--------------------- 159 (221)
+++|++.++. ++.+...|+.+. ....+||+|+++++++....
T Consensus 75 a~~n~~~~~~-------------~~~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (223)
T PRK14967 75 ARLNALLAGV-------------DVDVRRGDWARA----VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAV 137 (223)
T ss_pred HHHHHHHhCC-------------eeEEEECchhhh----ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHH
Confidence 9999988764 356666665432 12468999999987654321
Q ss_pred HHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEecCC
Q 027594 160 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKA 208 (221)
Q Consensus 160 ~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~~~ 208 (221)
+..+++.+.++|+|||++++....... ...+++.++ .+|.++.+...
T Consensus 138 ~~~~l~~a~~~Lk~gG~l~~~~~~~~~--~~~~~~~l~~~g~~~~~~~~~ 185 (223)
T PRK14967 138 LDRLCDAAPALLAPGGSLLLVQSELSG--VERTLTRLSEAGLDAEVVASQ 185 (223)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecccC--HHHHHHHHHHCCCCeEEEEee
Confidence 456778888999999999887655432 234555554 46776665443
No 17
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.69 E-value=6.3e-16 Score=117.30 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=91.8
Q ss_pred CCCeEEEeCCCccHHHHHHH-Hh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMA-LL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a-~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||||||+|..+..++ .. +++++++|+ +++++.++++++.++. +++++...|+.+....
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------------~ni~~~~~d~~~l~~~- 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------------DNIEFIQGDIEDLPQE- 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------------TTEEEEESBTTCGCGC-
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------------cccceEEeehhccccc-
Confidence 56899999999999999999 44 678999998 6699999999998875 4899999777652211
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 187 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~ 187 (221)
. ..+||+|+++.++++......+++.+.++|+++|.+++........
T Consensus 70 ~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 70 L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE 116 (152)
T ss_dssp S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence 2 2799999999999999999999999999999999999988774433
No 18
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.66 E-value=2.5e-16 Score=126.17 Aligned_cols=111 Identities=19% Similarity=0.300 Sum_probs=85.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEE-EEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-ELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~-~~dw~~~~~~~~ 140 (221)
+.|++|||+|||+|+++..+|++|+.|+++|. ++|++.|++....+-.. ...+.+. ..+-...+ .
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~----------~~~~~y~l~~~~~~~E---~ 154 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL----------EGAIAYRLEYEDTDVE---G 154 (282)
T ss_pred cCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh----------ccccceeeehhhcchh---h
Confidence 45789999999999999999999999999998 66999999874332210 1122111 11111212 1
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
..++||.|++++++.|..+...++..+.++|+|+|.++++...|.-
T Consensus 155 ~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 155 LTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred cccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 2456999999999999999999999999999999999999887763
No 19
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.66 E-value=4.2e-15 Score=121.80 Aligned_cols=150 Identities=22% Similarity=0.338 Sum_probs=107.2
Q ss_pred CeEEEEeeCCC-CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hh
Q 027594 20 GHQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IE 96 (221)
Q Consensus 20 ~~~~~i~~~~~-~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~ 96 (221)
...+.|..+|+ ++++|. ++.+..+.+++... ..++++|||+|||+|.+++.+++.|+. |+++|+ +.
T Consensus 85 ~~~~~i~i~p~~afgtg~--h~tt~~~l~~l~~~---------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~ 153 (250)
T PRK00517 85 PDEINIELDPGMAFGTGT--HPTTRLCLEALEKL---------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQ 153 (250)
T ss_pred CCeEEEEECCCCccCCCC--CHHHHHHHHHHHhh---------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHH
Confidence 44556777774 455554 67777877777643 346789999999999999999988875 999998 56
Q ss_pred hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeE
Q 027594 97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT 176 (221)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~ 176 (221)
+++.+++|++.|++ ...+.+.. + +.+||+|+++-. .+.+..++..+.++|+|||.
T Consensus 154 ~l~~A~~n~~~~~~-----------~~~~~~~~---~--------~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~ 208 (250)
T PRK00517 154 AVEAARENAELNGV-----------ELNVYLPQ---G--------DLKADVIVANIL---ANPLLELAPDLARLLKPGGR 208 (250)
T ss_pred HHHHHHHHHHHcCC-----------CceEEEcc---C--------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcE
Confidence 99999999998875 12232221 0 127999998732 34467788899999999999
Q ss_pred EEEEEEecChhHHHHHHHHHh-cCCeEEEecC
Q 027594 177 ILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 207 (221)
Q Consensus 177 ~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~~ 207 (221)
++++...... ...+.+.++ .+|.+..+..
T Consensus 209 lilsgi~~~~--~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 209 LILSGILEEQ--ADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred EEEEECcHhh--HHHHHHHHHHCCCEEEEEEE
Confidence 9987654433 244555554 4788766544
No 20
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.64 E-value=1.1e-14 Score=113.67 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=92.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++++|||+|||+|..++.++..+ ++|+++|. +++++.+++|++.++. +++++...|+.+. .
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------------~~i~~i~~d~~~~---~- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------------NNVEIVNGRAEDF---Q- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------------CCeEEEecchhhc---c-
Confidence 57899999999999999988764 57999998 5699999999988764 4588888776543 1
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-hcCCeEEEecCCCC
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE 210 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-~~~f~v~~v~~~~~ 210 (221)
..++||+|+++. ...++.+++.+.++|+|||.+++..............+.+ ..+|+......-..
T Consensus 106 ~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 106 HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCC
Confidence 256899999865 2457788899999999999988865433332222333332 24777666554443
No 21
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.64 E-value=2.4e-15 Score=123.56 Aligned_cols=108 Identities=22% Similarity=0.263 Sum_probs=89.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..++.+++.|.+|+++|. +++++.+++++...+. .+++++...+..+... ...
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~-----------~~~v~~~~~d~~~l~~--~~~ 110 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV-----------SDNMQFIHCAAQDIAQ--HLE 110 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccceEEEEcCHHHHhh--hcC
Confidence 4579999999999999999999999999998 6699999999887764 3567777765544321 235
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
++||+|+++.++++..+...+++.+.++|+|||.+++.....
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 689999999999998888999999999999999998876543
No 22
>PRK14968 putative methyltransferase; Provisional
Probab=99.63 E-value=1.4e-14 Score=113.26 Aligned_cols=143 Identities=20% Similarity=0.261 Sum_probs=102.5
Q ss_pred cchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCC
Q 027594 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (221)
Q Consensus 39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (221)
++.+.++++++.. .++++|||+|||+|..++.++..+++|+++|. +++++.+++|+..++..
T Consensus 9 ~~~~~~l~~~~~~-----------~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------ 71 (188)
T PRK14968 9 AEDSFLLAENAVD-----------KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR------ 71 (188)
T ss_pred chhHHHHHHhhhc-----------cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC------
Confidence 4567777777753 36789999999999999999988999999998 56999999999887641
Q ss_pred CCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC---------------------cCHHHHHHHHHHhcCCCeE
Q 027594 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------------------HLLEPLLQTIFALSGPKTT 176 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~---------------------~~~~~l~~~~~~ll~~~g~ 176 (221)
...+.+...|+.+.. ...+||+|+++++++.. .....+++.+.++|+|+|.
T Consensus 72 ----~~~~~~~~~d~~~~~----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~ 143 (188)
T PRK14968 72 ----NNGVEVIRSDLFEPF----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGR 143 (188)
T ss_pred ----CcceEEEeccccccc----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence 111666666664422 23489999999886641 1245688999999999999
Q ss_pred EEEEEEecChhHHHHHHHHHh-cCCeEEEecCC
Q 027594 177 ILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKA 208 (221)
Q Consensus 177 ~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~~~ 208 (221)
+++....... .+.+.+.+. .+|++..+...
T Consensus 144 ~~~~~~~~~~--~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 144 ILLLQSSLTG--EDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred EEEEEcccCC--HHHHHHHHHHCCCeeeeeeec
Confidence 8876653322 234455554 47877665443
No 23
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=8.9e-15 Score=117.83 Aligned_cols=107 Identities=14% Similarity=0.202 Sum_probs=92.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+|.+|||+|||||-.++.+++.. ++|+++|+ +.|++.+++.+..-+. ..+.++. ++.+.++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~------------~~i~fv~---~dAe~LPf 115 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV------------QNVEFVV---GDAENLPF 115 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc------------cceEEEE---echhhCCC
Confidence 78999999999999999999875 68999998 5599999998876543 2377777 56677788
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
++++||+|.++-.+.+..+.+..++++.|+|||||++++....+.
T Consensus 116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 899999999999999999999999999999999999887665543
No 24
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.62 E-value=1.1e-14 Score=117.94 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=82.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+|.+|||+|||||..+..+++. + .+|+++|. ++|++.+++++...+. .+|++.. ++.+.+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------------~~i~~v~---~da~~l 110 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------------QNIEFVQ---GDAEDL 110 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE----BTTB-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------------CCeeEEE---cCHHHh
Confidence 36789999999999999999875 3 47999998 5699999999987664 4788887 555566
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
+..+++||+|+++-.+.+..+....++++.++|||||++.+....+..
T Consensus 111 p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 111 PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 667899999999999999899999999999999999999887766554
No 25
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=5.8e-15 Score=116.81 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=82.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..++.+|+.|.+|+++|. +++++.++++++.++. .++++...|+... .. .
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~---~~-~ 93 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL------------DNLHTAVVDLNNL---TF-D 93 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CcceEEecChhhC---Cc-C
Confidence 5679999999999999999999999999998 5699999999887764 3466666555432 12 4
Q ss_pred CCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEE
Q 027594 143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.+||+|+++.++++. .....+++.+.++|+|||.+++.
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 579999999998763 36789999999999999996543
No 26
>PLN02244 tocopherol O-methyltransferase
Probab=99.62 E-value=1.4e-14 Score=123.75 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=88.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||||||+|..+..+++. |++|+++|+ +.+++.++++++.++. .+++.+...|..+ .+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----------~~~v~~~~~D~~~---~~~ 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----------SDKVSFQVADALN---QPF 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcCccc---CCC
Confidence 46789999999999999999875 889999998 5599999999887764 3568887765533 334
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..++||+|++..++++..+...+++.+.++|+|||.++++.
T Consensus 183 ~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 183 EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 46799999999999998889999999999999999998865
No 27
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.62 E-value=2.5e-14 Score=112.07 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=89.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|..++.+++. +++|+++|. +++++.+++|++.++. +++++...+..+. ..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------------~~i~~~~~d~~~~---~~ 109 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------------KNVTVVHGRAEEF---GQ 109 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------------CCEEEEeccHhhC---CC
Confidence 3789999999999999998864 568999998 5699999999999875 3488887665442 22
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP 206 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~ 206 (221)
.++||+|+++. ...++.+++.+.++|+|||++++....... ..+.+..+ .++.++.+.
T Consensus 110 -~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~---~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 110 -EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRDPE---EEIAELPKALGGKVEEVI 168 (187)
T ss_pred -CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCChH---HHHHHHHHhcCceEeeeE
Confidence 56899999874 256789999999999999999887654332 23333322 367665443
No 28
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.60 E-value=1.3e-14 Score=114.63 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=79.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..++.+++.|.+|+++|. +.+++.++++++.+++ ++.....|.... . ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~---~-~~ 92 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL-------------PLRTDAYDINAA---A-LN 92 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC-------------CceeEeccchhc---c-cc
Confidence 4579999999999999999999999999998 5699999998887664 244444443221 1 13
Q ss_pred CCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEE
Q 027594 143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
++||+|+++.++++. +....+++.+.++|+|||.+++.
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 579999999988764 46788999999999999996654
No 29
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.60 E-value=4.7e-15 Score=102.70 Aligned_cols=93 Identities=17% Similarity=0.287 Sum_probs=76.1
Q ss_pred EEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCcc
Q 027594 69 IELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146 (221)
Q Consensus 69 LelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD 146 (221)
||+|||+|..+..+++. +.+|+++|. +++++.++++....+ +.+... +....+.++++||
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~---------------~~~~~~---d~~~l~~~~~sfD 62 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG---------------VSFRQG---DAEDLPFPDNSFD 62 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST---------------EEEEES---BTTSSSS-TT-EE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC---------------chheee---hHHhCcccccccc
Confidence 89999999999999998 789999998 558999888766543 345553 3444556688999
Q ss_pred EEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 147 ~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
+|+++.++++.++...+++.+.++|||||.+++
T Consensus 63 ~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 63 VVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 999999999999999999999999999999875
No 30
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.60 E-value=4.4e-14 Score=120.42 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=94.5
Q ss_pred EEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecch-hhH
Q 027594 22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVL 98 (221)
Q Consensus 22 ~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~~-~~l 98 (221)
.+++...|+.+..+ .+-.++.+|.+.+.. . ...+|||||||+|.+++.+++.+ .+|+++|.+ .++
T Consensus 166 ~l~i~~~pgvFs~~-~lD~gt~lLl~~l~~----------~-~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al 233 (342)
T PRK09489 166 GLTVKTLPGVFSRD-GLDVGSQLLLSTLTP----------H-TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL 233 (342)
T ss_pred CEEEEeCCCCCCCC-CCCHHHHHHHHhccc----------c-CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 46777778765532 233445555555532 1 23489999999999999999875 479999984 599
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC-----CcCHHHHHHHHHHhcCC
Q 027594 99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-----EHLLEPLLQTIFALSGP 173 (221)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~-----~~~~~~l~~~~~~ll~~ 173 (221)
+.+++|++.|++ ...+...|. .. ...++||+|+++++++. ......+++.+.++|+|
T Consensus 234 ~~A~~nl~~n~l-------------~~~~~~~D~---~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp 295 (342)
T PRK09489 234 ESSRATLAANGL-------------EGEVFASNV---FS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS 295 (342)
T ss_pred HHHHHHHHHcCC-------------CCEEEEccc---cc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc
Confidence 999999999875 123333222 11 12568999999999875 23468899999999999
Q ss_pred CeEEEEEEE
Q 027594 174 KTTILLGYE 182 (221)
Q Consensus 174 ~g~~~i~~~ 182 (221)
||.++++..
T Consensus 296 gG~L~iVan 304 (342)
T PRK09489 296 GGELRIVAN 304 (342)
T ss_pred CCEEEEEEe
Confidence 999998764
No 31
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.57 E-value=1.7e-13 Score=118.78 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=97.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-ccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~ 140 (221)
++++|||+|||||.+++.++..|+ +|+++|. +.+++.+++|++.|++. .+++++...|..+... ...
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----------~~~v~~i~~D~~~~l~~~~~ 289 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----------LSKAEFVRDDVFKLLRTYRD 289 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------CCcEEEEEccHHHHHHHHHh
Confidence 678999999999999998887776 7999998 56999999999999861 1367888766543211 111
Q ss_pred cCCCccEEEEcccccCCc---------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-----hcCCeEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLVP 206 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~---------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-----~~~f~v~~v~ 206 (221)
...+||+|++++|.+..+ .+..++....++|+|||.++.+.....-. .+.|.+.. +.+-++..+.
T Consensus 290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~-~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT-SDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC-HHHHHHHHHHHHHHcCCeEEEEE
Confidence 245899999998876543 35566667788999999988765433222 23333333 2355666665
Q ss_pred CCCCCcccC
Q 027594 207 KAKESTMWG 215 (221)
Q Consensus 207 ~~~~~~~~~ 215 (221)
.....+.+.
T Consensus 369 ~~~~~~DhP 377 (396)
T PRK15128 369 QFRQAADHP 377 (396)
T ss_pred EcCCCCCCC
Confidence 555555544
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.57 E-value=4.6e-14 Score=118.69 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=86.7
Q ss_pred ecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecch-hhHHHHHHHHHHhhhccccC
Q 027594 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQM 115 (221)
Q Consensus 38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~ 115 (221)
-|.+.....+.+..- ...+|++|||+|||+|..+..++..|+ +|+++|.+ .++..++........
T Consensus 103 e~~s~~~~~~~l~~l--------~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~----- 169 (314)
T TIGR00452 103 EWRSDIKWDRVLPHL--------SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN----- 169 (314)
T ss_pred HHHHHHHHHHHHHhc--------CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-----
Confidence 466555545444321 456789999999999999999988887 59999974 477654332221110
Q ss_pred CCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 116 ~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..++.+..++..+. +. ..+||+|+++.++|+..+...+++.+.++|+|||.+++..
T Consensus 170 ------~~~v~~~~~~ie~l---p~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 170 ------DKRAILEPLGIEQL---HE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred ------CCCeEEEECCHHHC---CC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 23456665444332 22 3489999999999999999999999999999999998753
No 33
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.56 E-value=1.6e-13 Score=112.46 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=99.8
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (221)
.+..|.+++..... ....+.+|||+|||+|.+++.+++. +.+|+++|. +.+++.+++|+..|+
T Consensus 69 ~Te~Lv~~~l~~~~------~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-------- 134 (251)
T TIGR03704 69 RTEFLVDEAAALAR------PRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-------- 134 (251)
T ss_pred cHHHHHHHHHHhhc------ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------
Confidence 35666666654321 1113458999999999999999865 458999998 669999999998775
Q ss_pred CCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc--------------------------CHHHHHHHHHHhc
Q 027594 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALS 171 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~--------------------------~~~~l~~~~~~ll 171 (221)
+++...|+.+.... ....+||+|++++|+.... .+..++..+.++|
T Consensus 135 -------~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L 206 (251)
T TIGR03704 135 -------GTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL 206 (251)
T ss_pred -------CEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 25566666432211 1135799999999865321 1346777788999
Q ss_pred CCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEecCCCC
Q 027594 172 GPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKAKE 210 (221)
Q Consensus 172 ~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~~~~~ 210 (221)
+|||.+++.+..... ......++ .+|....+..+++
T Consensus 207 ~~gG~l~l~~~~~~~---~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 207 APGGHLLVETSERQA---PLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CCCCEEEEEECcchH---HHHHHHHHHCCCCceeeEcccc
Confidence 999999987654332 34555554 5788877776665
No 34
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.56 E-value=1.1e-14 Score=105.40 Aligned_cols=106 Identities=21% Similarity=0.230 Sum_probs=84.1
Q ss_pred CCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 65 GKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
|.+|||+|||+|..++.+++.+ .+++++|+ +.+++.+++|+..++. .+++++...|+.+... ....
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----------~~~~~~~~~D~~~~~~-~~~~ 68 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----------DDRVEVIVGDARDLPE-PLPD 68 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----------TTTEEEEESHHHHHHH-TCTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----------CceEEEEECchhhchh-hccC
Confidence 4689999999999999999998 78999998 6699999999999875 4678888877654431 1346
Q ss_pred CCccEEEEcccccCCc--------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 143 PPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~--------~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+||+|++++++.... ....+++.+.++|+|+|.+++..+
T Consensus 69 ~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 69 GKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp T-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8999999999987531 356789999999999999988654
No 35
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.9e-13 Score=113.48 Aligned_cols=103 Identities=22% Similarity=0.316 Sum_probs=79.9
Q ss_pred eEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
+|||||||||.+++.+++.+. +|+++|+ +++++.|++|+..|++ .++.+...||-... .+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------------~~~~~~~~dlf~~~-----~~ 175 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------------VRVLVVQSDLFEPL-----RG 175 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------------ccEEEEeeeccccc-----CC
Confidence 899999999999999998875 8999998 6799999999999985 34555555775432 34
Q ss_pred CccEEEEcccccCCc-------------------------CHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 144 PFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~-------------------------~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
+||+|++|+|+-..+ ....++..+...|+|+|.+++-......
T Consensus 176 ~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~ 243 (280)
T COG2890 176 KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG 243 (280)
T ss_pred ceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH
Confidence 999999999965432 2455777778889999988775554443
No 36
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.56 E-value=8.5e-14 Score=117.93 Aligned_cols=105 Identities=20% Similarity=0.219 Sum_probs=80.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++++|||||||+|..++.++..|++ |+++|.+ .++...+......+. ..++.+...+..+. +
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-----------~~~i~~~~~d~e~l---p 185 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-----------DQRAHLLPLGIEQL---P 185 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCCHHHC---C
Confidence 457899999999999999999998874 9999974 365443322211111 23577777555333 3
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. .++||+|++..++|+..+...+++.+.+.|+|||.+++..
T Consensus 186 ~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 3 5789999999999999999999999999999999998753
No 37
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.55 E-value=5.4e-14 Score=117.51 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=81.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++++|||+|||+|..++.+++.|.+|+++|. +.+++.++++++.+++ ++.+...|.... . ..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-------------~v~~~~~D~~~~---~-~~ 182 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-------------NIRTGLYDINSA---S-IQ 182 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEechhcc---c-cc
Confidence 4569999999999999999999999999998 5699999999887764 455555444322 1 25
Q ss_pred CCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
++||+|+++.++++. +....+++.+.++|+|||.+++..
T Consensus 183 ~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 183 EEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 689999999988763 468889999999999999966643
No 38
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.55 E-value=1.3e-13 Score=108.21 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=84.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|.+++.+++.+ .+|+++|. +++++.+++|++.++. .++++...+.. . .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------------~~i~~~~~d~~---~--~ 93 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------------GNIDIIPGEAP---I--E 93 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------------CCeEEEecCch---h--h
Confidence 67799999999999999999874 57999998 6699999999998764 35666654321 1 1
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCe
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFN 201 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~ 201 (221)
...+||+|+++... ..+..+++.+.+.|+|||.+++....... ...+.+.++ .+|.
T Consensus 94 ~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~--~~~~~~~l~~~g~~ 150 (187)
T PRK08287 94 LPGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFILLEN--LHSALAHLEKCGVS 150 (187)
T ss_pred cCcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEecHhh--HHHHHHHHHHCCCC
Confidence 23579999987542 34678899999999999999875533222 244444453 3553
No 39
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.55 E-value=2.2e-13 Score=112.33 Aligned_cols=110 Identities=19% Similarity=0.134 Sum_probs=85.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++.+|||+|||||..+..+++. + .+|+++|. ++|++.++++...... ....++++...|. ..+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---------~~~~~i~~~~~d~---~~l 139 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---------SCYKNIEWIEGDA---TDL 139 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---------ccCCCeEEEEccc---ccC
Confidence 35789999999999999988865 4 48999998 5699999876542110 0024677777554 334
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
+..+++||+|+++.++++..+...+++.+.++|+|||.+++....+
T Consensus 140 p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 4456789999999999998899999999999999999998876544
No 40
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.5e-13 Score=105.42 Aligned_cols=77 Identities=34% Similarity=0.483 Sum_probs=66.1
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+.+|++|+|||||||.+|+.++.+|++ |+++|. +++++.+++|+.+.. .++.+...|..+.
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-------------g~v~f~~~dv~~~--- 105 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-------------GDVEFVVADVSDF--- 105 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-------------CceEEEEcchhhc---
Confidence 6789999999999999999999999985 999998 789999999999843 5788888655433
Q ss_pred cccCCCccEEEEcccccC
Q 027594 139 KAVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~ 156 (221)
..++|.++.|+|+-.
T Consensus 106 ---~~~~dtvimNPPFG~ 120 (198)
T COG2263 106 ---RGKFDTVIMNPPFGS 120 (198)
T ss_pred ---CCccceEEECCCCcc
Confidence 678999999999754
No 41
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.54 E-value=8.7e-14 Score=115.10 Aligned_cols=104 Identities=18% Similarity=0.241 Sum_probs=81.7
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
...+|.+|||||||.|.+++.+|+. |++|+++.. ++-.+.+++.++..++ .+++++...||.+.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----------~~~v~v~~~D~~~~--- 124 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----------EDRVEVRLQDYRDL--- 124 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----------SSTEEEEES-GGG----
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEeecccc---
Confidence 5668999999999999999999987 999999998 4588999999998876 56788888777544
Q ss_pred cccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..+||.|++-+++.+. ...+.+++.+.++|+|||.+++-.
T Consensus 125 ---~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 125 ---PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp -----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred ---CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3399999999999885 678999999999999999998643
No 42
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.53 E-value=1.2e-13 Score=107.95 Aligned_cols=103 Identities=24% Similarity=0.293 Sum_probs=79.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.++||||||.|..++.+|++|.+|+++|.+ .+++.+++-++..++ .|+....|.....
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l-------------~i~~~~~Dl~~~~---- 90 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL-------------DIRTRVADLNDFD---- 90 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT--------------TEEEEE-BGCCBS----
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc-------------eeEEEEecchhcc----
Confidence 3466799999999999999999999999999985 499998887777765 3677776654432
Q ss_pred cCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
....||+|++.-++++ .+..+.+++.+++.++|||+.++..
T Consensus 91 ~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 91 FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 2468999998655554 6778899999999999999987744
No 43
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.53 E-value=1.7e-13 Score=113.04 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=82.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||||||+|..+..++. .+++|+++|. +.+++.++++.... +++.+...|.. ..+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~i~~~~~D~~---~~~ 112 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--------------NKIEFEANDIL---KKD 112 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--------------CceEEEECCcc---cCC
Confidence 45778999999999999988875 4779999998 56999888765431 35677765543 223
Q ss_pred ccCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.+.++||+|++.+++++.. +...+++.+.++|+|||.+++....
T Consensus 113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 3467899999999887753 7889999999999999999987653
No 44
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=1.4e-13 Score=112.91 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=91.1
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
...+|++|||||||.|.+++.+|+. |++|++++.+ +..+.+++.++..++ ..++++...||.+.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----------~~~v~v~l~d~rd~--- 134 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----------EDNVEVRLQDYRDF--- 134 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----------CcccEEEecccccc---
Confidence 5678999999999999999999976 8999999984 599999999998887 46899999899766
Q ss_pred cccCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.++||-|++-+.+.+.. ..+.+++.+.++|+|||.+++-..
T Consensus 135 ---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 135 ---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred ---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 34599999999998754 499999999999999999887443
No 45
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.52 E-value=6.5e-13 Score=123.16 Aligned_cols=139 Identities=19% Similarity=0.145 Sum_probs=104.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++++|||||||||..++.+++.|+ +|+++|. +.+++.+++|++.|++. ..++++...|..+.. ...
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----------~~~v~~i~~D~~~~l--~~~ 605 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----------GRQHRLIQADCLAWL--KEA 605 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----------ccceEEEEccHHHHH--HHc
Confidence 578999999999999999999888 4999998 55999999999999861 146888887653321 112
Q ss_pred CCCccEEEEcccccCCc-----------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-hcCCeEEEecCCC
Q 027594 142 APPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAK 209 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~-----------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-~~~f~v~~v~~~~ 209 (221)
..+||+|++++|.+... ....++..+.++|+|||.++++...+..... .+.+ +.++.+..+....
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~~ 682 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAKT 682 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecCC
Confidence 46899999998876421 3467888889999999999887655443322 2333 4589999998888
Q ss_pred CCcccCCC
Q 027594 210 ESTMWGNP 217 (221)
Q Consensus 210 ~~~~~~~~ 217 (221)
.+..|...
T Consensus 683 ~~~Dhp~~ 690 (702)
T PRK11783 683 LPPDFARN 690 (702)
T ss_pred CCCCCCCC
Confidence 87777543
No 46
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.51 E-value=3e-13 Score=109.38 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=84.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++++|||+|||+|..+..++.. + .+|+++|. +++++.+++++..++. +++.+...|... .
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~---~ 108 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------------HNVELVHGNAME---L 108 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------------CceEEEEechhc---C
Confidence 35789999999999999998865 3 58999998 5699999999876653 457776655433 2
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+...++||+|+++.++.+.+....+++.+.++|+|||.+++...
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 109 PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 23457899999998888888899999999999999999887653
No 47
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.51 E-value=1.7e-13 Score=104.05 Aligned_cols=99 Identities=24% Similarity=0.264 Sum_probs=79.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++++|||+|||+|..+..+++.|.+|+++|. +.+++. .+ +.....+ ......
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~----------------~~~~~~~---~~~~~~ 74 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN----------------VVFDNFD---AQDPPF 74 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT----------------SEEEEEE---CHTHHC
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh----------------hhhhhhh---hhhhhc
Confidence 457889999999999999999999999999998 456665 11 1111211 112223
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
..++||+|++++++++..+...+++.+.++|+|||.+++....+.
T Consensus 75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 467999999999999999999999999999999999999998765
No 48
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.51 E-value=4.1e-13 Score=108.05 Aligned_cols=125 Identities=17% Similarity=0.148 Sum_probs=95.3
Q ss_pred CeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++|||+|||+|..+..+++. +.+|+++|. +++++.+++++...+. .+++++...|..... ..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----------~~~i~~~~~d~~~~~----~~ 65 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----------QGRIRIFYRDSAKDP----FP 65 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC----CC
Confidence 47999999999999998876 368999998 5699999999887765 457788776654331 13
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC-------------hhHHHHHHHHHh-cCCeEEEe
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS-------------TSVHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~-------------~~~~~~~~~~~~-~~f~v~~v 205 (221)
.+||+|++..++++..+...+++.+.++|+|||.+++...... ......+.+.++ .+|++...
T Consensus 66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 5899999999999988899999999999999999998754211 001244555554 47887544
No 49
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.51 E-value=8.5e-13 Score=113.97 Aligned_cols=136 Identities=16% Similarity=0.154 Sum_probs=94.9
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
+.+..+.+.+.+.. .++.+|||+|||+|.+++.+++. +++|+++|+ +++++.+++|++.++.
T Consensus 236 peTE~LVe~aL~~l---------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~------ 300 (423)
T PRK14966 236 PETEHLVEAVLARL---------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA------ 300 (423)
T ss_pred ccHHHHHHHhhhcc---------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------
Confidence 34667777776542 14569999999999999998865 568999998 5699999999988752
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc-------------------------CHHHHHHHHHHhc
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALS 171 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~-------------------------~~~~l~~~~~~ll 171 (221)
++++...||..... + ...+||+|++|+|+.... ....+++.+.++|
T Consensus 301 -------rV~fi~gDl~e~~l-~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L 371 (423)
T PRK14966 301 -------RVEFAHGSWFDTDM-P-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL 371 (423)
T ss_pred -------cEEEEEcchhcccc-c-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc
Confidence 67888877754321 1 135799999999854211 1346777778899
Q ss_pred CCCeEEEEEEEecChhHHHHHHHHHh-cCCeE
Q 027594 172 GPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV 202 (221)
Q Consensus 172 ~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v 202 (221)
+|+|.+++....... +...+.++ .+|..
T Consensus 372 kpgG~lilEiG~~Q~---e~V~~ll~~~Gf~~ 400 (423)
T PRK14966 372 AEGGFLLLEHGFDQG---AAVRGVLAENGFSG 400 (423)
T ss_pred CCCcEEEEEECccHH---HHHHHHHHHCCCcE
Confidence 999998775544333 33334443 46644
No 50
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=5.8e-13 Score=109.09 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=80.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..+..++..|.+|+++|. +++++.++++... ..+...|+.. .+...
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~-----------------~~~~~~d~~~---~~~~~ 101 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAA-----------------DHYLAGDIES---LPLAT 101 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCC-----------------CCEEEcCccc---CcCCC
Confidence 4679999999999999999988999999998 5699888875321 2334444432 33345
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++||+|+++.++++..+...++..+.++|+|||.++++...
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 68999999999998889999999999999999999987543
No 51
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.50 E-value=5.4e-13 Score=110.57 Aligned_cols=106 Identities=21% Similarity=0.210 Sum_probs=85.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..++.+++. +. +|+++|. +++++.+++|.+.++. +++++...++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------------~~v~~~~~d~~~--- 139 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------------TNVEFRLGEIEA--- 139 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------------CCEEEEEcchhh---
Confidence 347889999999999988877754 54 6999998 6699999999887664 467777655533
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
++...++||+|+++.++++..+...+++.+.++|+|||++++...
T Consensus 140 l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 140 LPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 233456899999998888888889999999999999999998643
No 52
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.50 E-value=6.6e-13 Score=110.69 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=81.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|.+++.+++. +++|+++|+ +.+++.+++|++.++. .+++.+...|+... .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----------~~~i~~~~~D~~~~--~-- 185 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIQSDLFAA--L-- 185 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhc--c--
Confidence 3468999999999999999986 468999998 5699999999999875 35688888776432 1
Q ss_pred cCCCccEEEEcccccCCc-------------------------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~-------------------------~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
...+||+|++++|+.... ....++..+.++|+|||.+++-..
T Consensus 186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 186 PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 235799999998854321 135677888889999999887554
No 53
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.50 E-value=6.2e-13 Score=118.46 Aligned_cols=106 Identities=20% Similarity=0.271 Sum_probs=86.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||+|||+|..++.+++. +++|+++|+ +++++.+++|.... ..++.+...|+... +.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------------~~~v~~~~~d~~~~---~~ 328 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------------KCSVEFEVADCTKK---TY 328 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------------CCceEEEEcCcccC---CC
Confidence 35779999999999999988864 789999998 56999998876532 24677777666443 22
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
+.++||+|++.+++++..+...+++.+.++|+|||.+++....+
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 35689999999999999999999999999999999999876543
No 54
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.49 E-value=1.2e-12 Score=106.88 Aligned_cols=139 Identities=19% Similarity=0.228 Sum_probs=97.7
Q ss_pred cchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccC
Q 027594 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM 115 (221)
Q Consensus 39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~ 115 (221)
++.+..+.+.+.+.. ...+++|||+|||+|..++.++.. +.+++++|. +.+++.+++|+..++.
T Consensus 70 ~~~~~~l~~~~l~~~--------~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----- 136 (251)
T TIGR03534 70 RPDTEELVEAALERL--------KKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL----- 136 (251)
T ss_pred CCChHHHHHHHHHhc--------ccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----
Confidence 455666666666542 124569999999999999999986 558999998 5699999999998764
Q ss_pred CCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC--------------------------HHHHHHHHHH
Q 027594 116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTIFA 169 (221)
Q Consensus 116 ~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~--------------------------~~~l~~~~~~ 169 (221)
+++.+...|+... ...++||+|++++++..... ...++..+.+
T Consensus 137 -------~~~~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~ 205 (251)
T TIGR03534 137 -------DNVTFLQSDWFEP----LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR 205 (251)
T ss_pred -------CeEEEEECchhcc----CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH
Confidence 3577777666442 13568999999988664221 2367788889
Q ss_pred hcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEE
Q 027594 170 LSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKL 204 (221)
Q Consensus 170 ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~ 204 (221)
+|+|||.+++....... +.+.+.++ .+|....
T Consensus 206 ~L~~gG~~~~~~~~~~~---~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 206 LLKPGGWLLLEIGYDQG---EAVRALFEAAGFADVE 238 (251)
T ss_pred hcccCCEEEEEECccHH---HHHHHHHHhCCCCceE
Confidence 99999999886644332 23333333 4675433
No 55
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.48 E-value=1.4e-12 Score=108.78 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=82.2
Q ss_pred CeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
.+|||+|||+|.+++.++... ++|+++|+ +++++.+++|+..++. .+++.+...||.+.. ..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----------~~~v~~~~~d~~~~~----~~ 180 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----------EHRVEFIQSNLFEPL----AG 180 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhccC----cC
Confidence 689999999999999999864 58999998 5699999999998875 345888887775431 23
Q ss_pred CCccEEEEcccccCCc-------------------------CHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 143 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~-------------------------~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
.+||+|++++|+.... ....++..+.++|+|||.+++.......
T Consensus 181 ~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~ 249 (284)
T TIGR00536 181 QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ 249 (284)
T ss_pred CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 3799999998764322 2456778888899999998876654433
No 56
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.48 E-value=1.5e-14 Score=101.69 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=61.0
Q ss_pred EEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc-cCCC
Q 027594 69 IELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPP 144 (221)
Q Consensus 69 LelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~-~~~~ 144 (221)
||+|||+|..+..++.. +.+++++|+ +.|++.+++++..... .+.. ...+...+.... ..++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~ 66 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------------DNFE--RLRFDVLDLFDYDPPES 66 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------------EE--EEE--SSS---CCC---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------------ccee--EEEeecCChhhcccccc
Confidence 79999999999999887 678999998 5599888887777542 1222 223333322211 1259
Q ss_pred ccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 145 fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
||+|+++.++++.++...+++.+.++|+|||.+
T Consensus 67 fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 67 FDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999985
No 57
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=7e-13 Score=108.49 Aligned_cols=105 Identities=16% Similarity=0.253 Sum_probs=82.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~----ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++.+|||||||+|..++.+++. +++|+++|. ++|++.+++++..++. ..++++...+..+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----------~~~v~~~~~d~~~~--- 121 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDI--- 121 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCChhhC---
Confidence 5679999999999999888762 568999998 6699999999987654 34677777554332
Q ss_pred cccCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 139 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
+ ...+|+|+++-++++.+ ....+++.+.+.|+|||.++++....
T Consensus 122 ~--~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 122 A--IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred C--CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 1 24699999988876643 35689999999999999999987543
No 58
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.47 E-value=6.4e-13 Score=104.98 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=82.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||||||+|.+++.++..+ ++|+++|. +++++.+++|++.++. .++.+...|+.... ...
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------------~~v~~~~~D~~~~l--~~~ 118 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------------GNARVVNTNALSFL--AQP 118 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEEchHHHHH--hhc
Confidence 56799999999999999765554 57999997 6699999999999875 46788877664322 112
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHh--cCCCeEEEEEEEec
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILLGYEIR 184 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~l--l~~~g~~~i~~~~r 184 (221)
..+||+|++++| |.....+.++..+... ++|++.+|+.+..+
T Consensus 119 ~~~fDlV~~DPP-y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 119 GTPHNVVFVDPP-FRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CCCceEEEECCC-CCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 346999999888 6667778888888774 78999999876643
No 59
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.47 E-value=2.8e-12 Score=113.33 Aligned_cols=143 Identities=13% Similarity=0.117 Sum_probs=101.1
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
+..+.+.+.+.+ ...++.+|||+|||+|.+++.+|+.+++|+++|. ++|++.+++|++.|+.
T Consensus 282 ~e~l~~~vl~~l-------~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~---------- 344 (443)
T PRK13168 282 NQKMVARALEWL-------DPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL---------- 344 (443)
T ss_pred HHHHHHHHHHHh-------cCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC----------
Confidence 455666665542 2346689999999999999999999999999998 5699999999999875
Q ss_pred CCCceEEEEEEecCCCC-ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcC
Q 027594 121 LLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSN 199 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~-~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~ 199 (221)
+++++...|+.+... ......+||+|+++++.-. ....+..+.+ ++|++.+|++...... -+.+....+.+
T Consensus 345 --~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp~tl--aRDl~~L~~~g 416 (443)
T PRK13168 345 --DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNPATL--ARDAGVLVEAG 416 (443)
T ss_pred --CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeChHHh--hccHHHHhhCC
Confidence 468888888754321 1122457999999877433 3455566666 5899999997744322 23433334678
Q ss_pred CeEEEecCCC
Q 027594 200 FNVKLVPKAK 209 (221)
Q Consensus 200 f~v~~v~~~~ 209 (221)
|+++.+.--+
T Consensus 417 Y~l~~i~~~D 426 (443)
T PRK13168 417 YRLKRAGMLD 426 (443)
T ss_pred cEEEEEEEec
Confidence 9988775544
No 60
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.47 E-value=7.8e-13 Score=103.90 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=79.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++++||||+||+|.+|+.++.+|+ +|+++|. +.+++.+++|++.|+. .+++++...|........
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----------~~~~~~~~~D~~~~l~~~ 115 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----------GEQAEVVRNSALRALKFL 115 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------cccEEEEehhHHHHHHHh
Confidence 45788999999999999999999998 6999998 5699999999999975 346777775553221101
Q ss_pred ccCCC-ccEEEEcccccCCcCHHHHHHHHHH--hcCCCeEEEEEEE
Q 027594 140 AVAPP-FDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~-fD~Vi~~d~~y~~~~~~~l~~~~~~--ll~~~g~~~i~~~ 182 (221)
....+ ||+|+ .||.|.......++..+.. +++++|.+++-+.
T Consensus 116 ~~~~~~~dvv~-~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 116 AKKPTFDNVIY-LDPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred hccCCCceEEE-ECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 11223 55555 5666777778888877755 5788887766544
No 61
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.46 E-value=1.1e-12 Score=106.16 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=91.9
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCC
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL 122 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 122 (221)
...+|+.... ...++++|||||||+|..+..+++.+++|+++|. +.++..+++++..++.
T Consensus 35 ~~~~~l~~~~-------~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------ 95 (233)
T PRK05134 35 LRLNYIREHA-------GGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL------------ 95 (233)
T ss_pred HHHHHHHHhc-------cCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC------------
Confidence 4456666552 3457889999999999999999999999999998 5688999988876542
Q ss_pred CceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 123 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 123 ~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++.+...++..... ....+||+|+++.++.+......+++.+.++|+|+|.++++...
T Consensus 96 -~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 96 -KIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred -ceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 35555544443321 12468999999999999888999999999999999999987643
No 62
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.46 E-value=8.8e-13 Score=108.60 Aligned_cols=106 Identities=23% Similarity=0.262 Sum_probs=75.9
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.+++|++|||||||.|..+..++..||+ |+++|.. .+-.++-.+.+.-+. ....+....+.. +.++
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~-~lf~~QF~~i~~~lg---------~~~~~~~lplgv---E~Lp 178 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPS-PLFYLQFEAIKHFLG---------QDPPVFELPLGV---EDLP 178 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCC-hHHHHHHHHHHHHhC---------CCccEEEcCcch---hhcc
Confidence 4679999999999999999999999996 9999952 122222222222210 011233332222 2233
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. .+.||+|++..++||..+.-..+..++..|+|||.+++-
T Consensus 179 ~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 179 N-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred c-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 3 578999999999999999999999999999999998863
No 63
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.46 E-value=4.2e-13 Score=106.55 Aligned_cols=125 Identities=14% Similarity=-0.022 Sum_probs=89.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEe-cCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw-~~~~~~~ 139 (221)
.+.+|||+|||+|..+..+++. +.+|+++|. +++++.+++|+..++. .++.+...|+ ..... .
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~l~~-~ 106 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------------TNLRLLCGDAVEVLLD-M 106 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------------CCEEEEecCHHHHHHH-H
Confidence 5679999999999999999876 357999998 6699999999988764 4678888666 32211 1
Q ss_pred ccCCCccEEEEcccccCCc--------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEE
Q 027594 140 AVAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK 203 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~--------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~ 203 (221)
....+||+|+++.+..+.. ....+++.+.++|+|||.++++.... .....+++.++ .++.++
T Consensus 107 ~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 107 FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--HHHHHHHHHHHhCccccc
Confidence 2356899999874322111 25789999999999999999876443 33455556554 466554
No 64
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=1.8e-12 Score=109.07 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=80.0
Q ss_pred CeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++|||+|||+|.+++.+++. +++|+++|+ +.+++.+++|++.++. .+++.+...|+.+. . ..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----------~~~i~~~~~D~~~~--l--~~ 199 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIESDLFAA--L--PG 199 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCcEEEEECchhhh--C--CC
Confidence 68999999999999999976 468999998 5699999999999875 35688888776432 1 23
Q ss_pred CCccEEEEcccccCCc-------------------------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 143 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~-------------------------~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+||+|++++|+.... ....+++.+.++|+|||.+++-..
T Consensus 200 ~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 200 RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 5799999998854321 135678888889999999887543
No 65
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=3.8e-12 Score=105.51 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=94.1
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
+.+..+.+++... ....++.+|||+|||+|.+++.++... .+|+++|. +.+++.+++|+. +..
T Consensus 91 ~~te~l~~~~~~~-------~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~------ 156 (275)
T PRK09328 91 PETEELVEWALEA-------LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL------ 156 (275)
T ss_pred CCcHHHHHHHHHh-------ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC------
Confidence 3455666666533 123456799999999999999999875 67999998 569999999998 222
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc--------------------------CHHHHHHHHHHh
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFAL 170 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~--------------------------~~~~l~~~~~~l 170 (221)
..++.+...|+.... ...+||+|++++++.... ....++..+.++
T Consensus 157 -----~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~ 227 (275)
T PRK09328 157 -----GARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY 227 (275)
T ss_pred -----CCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh
Confidence 356888887774321 146899999998865321 135577777899
Q ss_pred cCCCeEEEEEEEecChhHHHHHHHHHh-cCCe
Q 027594 171 SGPKTTILLGYEIRSTSVHEQMLQMWK-SNFN 201 (221)
Q Consensus 171 l~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~ 201 (221)
|+|||.+++....... +.+.+.++ .+|.
T Consensus 228 Lk~gG~l~~e~g~~~~---~~~~~~l~~~gf~ 256 (275)
T PRK09328 228 LKPGGWLLLEIGYDQG---EAVRALLAAAGFA 256 (275)
T ss_pred cccCCEEEEEECchHH---HHHHHHHHhCCCc
Confidence 9999999885543322 33334443 4664
No 66
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.45 E-value=4e-12 Score=100.65 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=88.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...++.+|||+|||+|.+++.+++. +.+|+++|. +++++.+++|+..+++ .+++.+...|..+.
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----------~~~v~~~~~d~~~~- 104 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----------LNNIVLIKGEAPEI- 104 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CCCeEEEEechhhh-
Confidence 3457889999999999999998864 357999998 6699999999998874 25677766554321
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV 202 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v 202 (221)
......+||.|+++. .......+++.+.++|+|||++++... ..+......+.++ .+|.+
T Consensus 105 -l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 105 -LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNL 165 (198)
T ss_pred -HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCe
Confidence 112236899999853 335678899999999999999876332 2223345555553 35544
No 67
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.45 E-value=4.8e-12 Score=91.99 Aligned_cols=102 Identities=25% Similarity=0.306 Sum_probs=77.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++++|||+|||+|..+..+++. +.+|+++|. +.+++.+++|++.++. .++.+...+.... ..
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~~~~~~--~~ 83 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------------SNIVIVEGDAPEA--LE 83 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------------CceEEEecccccc--Ch
Confidence 35679999999999999999976 357999998 5599999999988764 3566655443221 11
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
....+||+|++... ......+++.+.++|+|||.+++..
T Consensus 84 ~~~~~~D~v~~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 DSLPEPDRVFIGGS---GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhcCCCCEEEECCc---chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 12458999998653 2346789999999999999998754
No 68
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.45 E-value=1.4e-12 Score=107.20 Aligned_cols=96 Identities=20% Similarity=0.195 Sum_probs=77.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||||||+|..+..+++. +.+|+++|. +.|++.++++ ++.+...|..+ ..
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~d~~~---~~ 85 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------------GVDARTGDVRD---WK 85 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------------CCcEEEcChhh---CC
Confidence 46789999999999999999887 678999998 5588888652 13455544322 21
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..++||+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 86 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 86 -PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred -CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 24689999999999998889999999999999999998854
No 69
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.45 E-value=2.3e-12 Score=105.90 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=77.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||||||+|..+..++.. +.+|+++|. +.+++.++++.. ++.+...|... ..
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------------~~~~~~~d~~~---~~ 89 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------------DCQFVEADIAS---WQ 89 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------------CCeEEECchhc---cC
Confidence 46789999999999999999876 568999998 569998887531 24454433322 11
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
...+||+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 90 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 -PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 24589999999999988889999999999999999988864
No 70
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.44 E-value=3.7e-13 Score=112.31 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=86.5
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+.+++|.|||+|||||.+|+.+|+.||+ |+++|.+++.+.+++.+..|++ .+.|++......+.
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~-----------~~ii~vi~gkvEdi--- 121 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGL-----------EDVITVIKGKVEDI--- 121 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCc-----------cceEEEeecceEEE---
Confidence 56889999999999999999999999995 9999999988999999999987 45678877444333
Q ss_pred cccCCCccEEEEccc---ccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 139 KAVAPPFDYIIGTDV---VYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~---~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
..+.++.|+|++-.. ++.++.+..++-.=.+-|+|||.+|
T Consensus 122 ~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 122 ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 333689999988654 4457788888888888899999766
No 71
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.44 E-value=2.4e-12 Score=109.31 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=80.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||||||+|..++.+++. +.+|+++|. +++++.++++...+ ++.+...|..+ .+.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~---------------~i~~i~gD~e~---lp~ 174 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---------------ECKIIEGDAED---LPF 174 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc---------------CCeEEeccHHh---CCC
Confidence 5679999999999999988764 467999998 56999998875422 35566644432 333
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
..++||+|+++.++++..+...+++.+.++|+|||.+++...
T Consensus 175 ~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 457899999999999888889999999999999999887654
No 72
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.44 E-value=2.6e-12 Score=102.95 Aligned_cols=114 Identities=14% Similarity=0.122 Sum_probs=82.2
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
.+..+...+.+.+ ...++.+|||+|||+|..+..+++... +|+++|. +++++.+++|++.++.
T Consensus 61 ~~p~~~~~~~~~l-------~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------ 127 (215)
T TIGR00080 61 SAPHMVAMMTELL-------ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------ 127 (215)
T ss_pred chHHHHHHHHHHh-------CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------
Confidence 3444445555442 344788999999999999999998743 4999997 6799999999998874
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+++++...|..... ....+||+|+++.... .+...+.+.|+|||++++...
T Consensus 128 ------~~v~~~~~d~~~~~---~~~~~fD~Ii~~~~~~------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 128 ------DNVIVIVGDGTQGW---EPLAPYDRIYVTAAGP------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ------CCeEEEECCcccCC---cccCCCCEEEEcCCcc------cccHHHHHhcCcCcEEEEEEc
Confidence 46777775543321 1246899999875432 334567788999999887543
No 73
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.43 E-value=3.7e-12 Score=113.94 Aligned_cols=106 Identities=21% Similarity=0.307 Sum_probs=80.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|.+++.+++. +++|+++|+ +.+++.+++|+..+++ .+++.+...||....
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----------~~~v~~~~~D~~~~~---- 202 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----------TDRIQIIHSNWFENI---- 202 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----------ccceeeeecchhhhC----
Confidence 3468999999999999988864 568999998 5699999999998875 356888887764321
Q ss_pred cCCCccEEEEcccccCCc--------------------------CHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~--------------------------~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
...+||+|++|+|+...+ .+..++..+.++|+|||.+++.....
T Consensus 203 ~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~ 272 (506)
T PRK01544 203 EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK 272 (506)
T ss_pred cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc
Confidence 245899999998865321 13346677788999999998865433
No 74
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.43 E-value=4.8e-13 Score=103.79 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=85.1
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
.++||+|||.|.++..+|.++.+++++|. +.+++.+++.+.. .++|.+...+.-.. .+.++
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~--------------~~~V~~~~~dvp~~----~P~~~ 106 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG--------------LPHVEWIQADVPEF----WPEGR 106 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---------------SSEEEEES-TTT-------SS-
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC--------------CCCeEEEECcCCCC----CCCCC
Confidence 48999999999999999999989999998 5599999987664 24688887555332 24689
Q ss_pred ccEEEEcccccCCcC---HHHHHHHHHHhcCCCeEEEEEEEecCh-------hHHHHHHHHHhcCC-eEEEe
Q 027594 145 FDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWKSNF-NVKLV 205 (221)
Q Consensus 145 fD~Vi~~d~~y~~~~---~~~l~~~~~~ll~~~g~~~i~~~~r~~-------~~~~~~~~~~~~~f-~v~~v 205 (221)
||+|+.+.++|+.+. +..+++.+...|+|||.+++++..... ..-+...+++.+.+ +|+.+
T Consensus 107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~ 178 (201)
T PF05401_consen 107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERV 178 (201)
T ss_dssp EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEE
T ss_pred eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEE
Confidence 999999999998654 556788888899999999998763211 11345556665543 45444
No 75
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.43 E-value=5.3e-12 Score=100.49 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=75.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++.+|||+|||+|..+..+++. +.+|+++|. +++++.+++|+..++. .+++++...|.....
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----------~~~v~~~~~d~~~~~-- 137 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----------WGVVEVYHGDGKRGL-- 137 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEECCcccCC--
Confidence 46789999999999999888865 358999998 6699999999988764 245777775543221
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+||+|+++..+.+ +...+.+.|+|||++++...
T Consensus 138 -~~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 138 -EKHAPFDAIIVTAAAST------IPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred -ccCCCccEEEEccCcch------hhHHHHHhcCcCcEEEEEEc
Confidence 12468999998866542 33567788999999887653
No 76
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.41 E-value=2.7e-12 Score=104.49 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=83.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~----ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++.+|||||||+|..+..+++. +++|+++|. ++|++.+++++..... ..++++...|+....
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRHVE-- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhCC--
Confidence 6679999999999999988864 568999998 6699999999876442 246777776664332
Q ss_pred cccCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 139 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
...+|+|+++.++++.. ....+++.+.+.|+|||.++++...+.
T Consensus 120 ---~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 120 ---IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred ---CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 24689999988877643 467899999999999999999876543
No 77
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.41 E-value=7.7e-12 Score=107.59 Aligned_cols=143 Identities=20% Similarity=0.126 Sum_probs=103.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-cc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~ 139 (221)
.+|++||++-|-||..|+.+|..|| +||.+|.+. +++.+++|++.|++. ..++.++..|.-.... ..
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----------~~~~~~i~~Dvf~~l~~~~ 285 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----------GDRHRFIVGDVFKWLRKAE 285 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----------ccceeeehhhHHHHHHHHH
Confidence 3599999999999999999999999 799999865 999999999999972 2445565533211110 11
Q ss_pred ccCCCccEEEEcccccCC---------cCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-----hcCCeEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLV 205 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~---------~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-----~~~f~v~~v 205 (221)
....+||+||..||-|-. .++..++..+.++|+|||.++++...+.-. .+.|.+++ ..+..+..+
T Consensus 286 ~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~-~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 286 RRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS-SDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred hcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC-HHHHHHHHHHHHHhcCCcEEEe
Confidence 224599999999998852 356778899999999999999877665543 23333332 235677777
Q ss_pred cCCCCCcccCC
Q 027594 206 PKAKESTMWGN 216 (221)
Q Consensus 206 ~~~~~~~~~~~ 216 (221)
......+++..
T Consensus 365 ~~~~~~~D~p~ 375 (393)
T COG1092 365 EGEGQPPDHPR 375 (393)
T ss_pred eccCCCCCccc
Confidence 77777776643
No 78
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.41 E-value=5.1e-12 Score=101.09 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=81.2
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
++..+..++.... ...++.+|||+|||+|..+..+++. + .+|+++|. +++++.+++|++.++.
T Consensus 60 ~~p~~~~~~~~~l-------~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------ 126 (212)
T PRK13942 60 SAIHMVAIMCELL-------DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------ 126 (212)
T ss_pred CcHHHHHHHHHHc-------CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------
Confidence 4555555665542 3447889999999999999988876 3 58999997 6699999999998764
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
+++++...|- ........+||+|++.... ..+...+.+.|+|||++++..
T Consensus 127 ------~~v~~~~gd~---~~~~~~~~~fD~I~~~~~~------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 127 ------DNVEVIVGDG---TLGYEENAPYDRIYVTAAG------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ------CCeEEEECCc---ccCCCcCCCcCEEEECCCc------ccchHHHHHhhCCCcEEEEEE
Confidence 4677777443 2222235689999886433 233456677899999988754
No 79
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.40 E-value=1.7e-11 Score=98.05 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=98.8
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccC---C
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQM---N 116 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---~ 116 (221)
....|.+++... ...++.+|||+|||.|.-++.+|.+|.+||++|+ +.+++.+.. .++...... .
T Consensus 19 p~~~l~~~~~~l--------~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~ 87 (213)
T TIGR03840 19 VNPLLVKHWPAL--------GLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGE 87 (213)
T ss_pred CCHHHHHHHHhh--------CCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceecccc
Confidence 456777777642 1125679999999999999999999999999998 458886532 222210000 0
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEE-EEecC-----hh-
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLG-YEIRS-----TS- 187 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~-~~~r~-----~~- 187 (221)
.......+|++...|..+... ....+||.|+-..++.+ .+..+..++.+.++|+|||.+++. ..... +.
T Consensus 88 ~~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~ 165 (213)
T TIGR03840 88 FTRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPF 165 (213)
T ss_pred ceeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCC
Confidence 000012457777755544321 11357999998766554 455677999999999999975543 32211 11
Q ss_pred -H-HHHHHHHHhcCCeEEEecCCCCC
Q 027594 188 -V-HEQMLQMWKSNFNVKLVPKAKES 211 (221)
Q Consensus 188 -~-~~~~~~~~~~~f~v~~v~~~~~~ 211 (221)
+ ...+.+.+...|+++.+......
T Consensus 166 ~~~~~eL~~~f~~~~~i~~~~~~~~~ 191 (213)
T TIGR03840 166 SVSPAEVEALYGGHYEIELLESRDVL 191 (213)
T ss_pred CCCHHHHHHHhcCCceEEEEeecccc
Confidence 1 24455555667888777665544
No 80
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.40 E-value=8e-12 Score=106.38 Aligned_cols=120 Identities=17% Similarity=0.125 Sum_probs=89.7
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCC
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDL 121 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~ 121 (221)
..++..+.... ...++.+|||+|||||.+.+.++..+++++++|. +.|++.++.|++.++.
T Consensus 168 ~~la~~~~~l~-------~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~----------- 229 (329)
T TIGR01177 168 PKLARAMVNLA-------RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGI----------- 229 (329)
T ss_pred HHHHHHHHHHh-------CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCC-----------
Confidence 34566655431 2346789999999999999999999999999998 5699999999998775
Q ss_pred CCceEEEEEEecCCCCccccCCCccEEEEcccccCC---------cCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 122 ~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~---------~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
.++.+...|..+ .+....+||+|++++|+-.. .....++..+.+.|+|||.+++..+..
T Consensus 230 -~~i~~~~~D~~~---l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 230 -EDFFVKRGDATK---LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred -CCCeEEecchhc---CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 235666644433 33335689999998775321 225788999999999999988877654
No 81
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.39 E-value=6.1e-12 Score=101.75 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=85.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||+|||+|..+..++..+ .+++++|. +.+++.+++++..++. ..++.+...|+.+..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~--- 116 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----------SGNVEFVQGDAEALP--- 116 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----------ccCeEEEecccccCC---
Confidence 56899999999999999998776 67999998 5699999998876543 245777776654432
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+||+|+++.++++......+++.+.++|+|||.+++...
T Consensus 117 ~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 2356899999998888888999999999999999999887654
No 82
>PRK08317 hypothetical protein; Provisional
Probab=99.39 E-value=1.2e-11 Score=99.88 Aligned_cols=105 Identities=19% Similarity=0.131 Sum_probs=82.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...++.+|||+|||+|..+..++... .+|+++|. +.+++.++++.... ..++.+...|....
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------------~~~~~~~~~d~~~~- 81 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------------GPNVEFVRGDADGL- 81 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------------CCceEEEecccccC-
Confidence 34467899999999999999888653 57999998 56888888873321 24567766554332
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
+....+||+|+++.++.+..+...+++.+.++|+|||.+++..
T Consensus 82 --~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 82 --PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred --CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 2335789999999999988889999999999999999998765
No 83
>PRK04266 fibrillarin; Provisional
Probab=99.39 E-value=6.5e-11 Score=95.47 Aligned_cols=130 Identities=17% Similarity=0.127 Sum_probs=83.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++.+|||+|||+|..++.+++.. .+|+++|. ++|++.+.++++.. .++.+...|-......
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------------~nv~~i~~D~~~~~~~ 135 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------------KNIIPILADARKPERY 135 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------------CCcEEEECCCCCcchh
Confidence 4477899999999999999999763 47999998 56998887776542 2455555443321101
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh-------hHHHHHHHHHh-cCCeEEEecC
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWK-SNFNVKLVPK 207 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~-------~~~~~~~~~~~-~~f~v~~v~~ 207 (221)
.....+||+|++.-. .+.....++..+.++|+|||.++++.+.|.- ...+...+.++ .+|++.....
T Consensus 136 ~~l~~~~D~i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 136 AHVVEKVDVIYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred hhccccCCEEEECCC--ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 112356999986411 1222345688999999999999995433221 11223334443 4898866544
No 84
>PLN02672 methionine S-methyltransferase
Probab=99.39 E-value=9.5e-12 Score=118.30 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=102.5
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhcccc---
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQ--- 114 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~--- 114 (221)
.+..|.+.+.... ...+++++|||||||+|.+++.+++.. ++|+++|+ +++++.+++|++.|++....
T Consensus 101 eTE~lve~L~~~~------~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 101 WSFTFYEGLNRHP------DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred hHHHHHHHHHhcc------cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence 3556777754321 123467899999999999999999764 57999998 66999999999998642000
Q ss_pred -CCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC----------------------------------
Q 027594 115 -MNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------------------- 159 (221)
Q Consensus 115 -~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~---------------------------------- 159 (221)
........+++++...||.... .....+||+|++|+|+-...+
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~--~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d 252 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYC--RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF 252 (1082)
T ss_pred cccccccccccEEEEECchhhhc--cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc
Confidence 0000011246888888886542 111236999999998532110
Q ss_pred ----HHHHHHHHHHhcCCCeEEEEEEEecChhHHH-HHHHHHhcCCeEEEecCCC
Q 027594 160 ----LEPLLQTIFALSGPKTTILLGYEIRSTSVHE-QMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 160 ----~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~-~~~~~~~~~f~v~~v~~~~ 209 (221)
+..++....++|+|||.+++-...+..+... .+++. .+|+...+-..+
T Consensus 253 GL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~--~gf~~~~~~~~~ 305 (1082)
T PLN02672 253 GLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFER--RGFRITKLWQTK 305 (1082)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHH--CCCCeeEEeeeh
Confidence 2556777788899999998877665554333 23332 467665444433
No 85
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.39 E-value=1.3e-11 Score=106.92 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=78.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||||||+|..++.+++. |++|+++|. +++++.++++++ +. .+++...|+...
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-------------~v~~~~~D~~~l---- 225 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-------------PVEIRLQDYRDL---- 225 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-------------eEEEEECchhhc----
Confidence 447789999999999999988864 889999998 569999998774 21 255555454321
Q ss_pred ccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.++||.|++..++.+. ...+.+++.+.++|+|||.+++..
T Consensus 226 --~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 226 --NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred --CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4689999999888774 346789999999999999998854
No 86
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.39 E-value=6.5e-12 Score=100.96 Aligned_cols=127 Identities=20% Similarity=0.222 Sum_probs=94.4
Q ss_pred cchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCC
Q 027594 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (221)
Q Consensus 39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (221)
|........|+....... .....+.+|||+|||+|..+..+++.+++++++|. +.+++.+++++..++.
T Consensus 23 ~~~~~~~~~~i~~~~~~~---~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------- 92 (224)
T TIGR01983 23 HKMNPLRLDYIRDTIRKN---KKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL------- 92 (224)
T ss_pred HHhhHHHHHHHHHHHHhc---ccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-------
Confidence 334445556766554211 11245789999999999999999988889999998 5699999998887653
Q ss_pred CCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.++.+...+...... ....+||+|+++.++++......+++.+.++|+|+|.++++..
T Consensus 93 -----~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 93 -----LKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred -----CceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 245655544432221 1136899999999999999999999999999999999888654
No 87
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.38 E-value=1.2e-12 Score=92.41 Aligned_cols=92 Identities=25% Similarity=0.325 Sum_probs=70.8
Q ss_pred EEEeCCCccHHHHHHHHhC-----CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 68 VIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 68 vLelGcG~G~~~l~~a~~g-----a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
|||||||+|.....+++.. .+++++|+ +++++.++++....+. ++++...|..+ ++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-------------~~~~~~~D~~~---l~~~ 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-------------KVRFVQADARD---LPFS 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-------------TSEEEESCTTC---HHHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-------------ceEEEECCHhH---Cccc
Confidence 7999999999999998764 68999998 5699999998876442 57777755533 4445
Q ss_pred CCCccEEEEccc-ccC--CcCHHHHHHHHHHhcCCCe
Q 027594 142 APPFDYIIGTDV-VYA--EHLLEPLLQTIFALSGPKT 175 (221)
Q Consensus 142 ~~~fD~Vi~~d~-~y~--~~~~~~l~~~~~~ll~~~g 175 (221)
.++||+|+++.. +.+ .+....+++.+.++++|||
T Consensus 65 ~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 65 DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 679999999544 443 4578999999999999987
No 88
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.38 E-value=1.2e-11 Score=104.30 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=84.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||+|||+|..++.+++.. .+++++|.+.+++.+++|++..+. .+++++...|..+..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl-----------~~rv~~~~~d~~~~~---- 212 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKES---- 212 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCc-----------cceEEEEecCccCCC----
Confidence 356799999999999999999875 579999998899999999998775 467888886543321
Q ss_pred cCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+.+|+|+.+.++|+.. ....+++.+.+.|+|||++++...
T Consensus 213 -~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 213 -YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred -CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 13479999998888654 346799999999999999999865
No 89
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.38 E-value=5.2e-12 Score=99.67 Aligned_cols=126 Identities=12% Similarity=0.008 Sum_probs=88.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
...++||||||+|..++.+|+.. +.|+++|. +++++.+++++..+++ .++.+...|..+......
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------------~ni~~i~~d~~~~~~~~~ 83 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------------KNLHVLCGDANELLDKFF 83 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------------CCEEEEccCHHHHHHhhC
Confidence 45699999999999999999874 47999998 5699999999988765 478888866643221112
Q ss_pred cCCCccEEEEcccccCCc--------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhc--CCeEE
Q 027594 141 VAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS--NFNVK 203 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~--------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~--~f~v~ 203 (221)
....+|.|+.+-+.-+.. ..+.+++.+.++|+|||.+++..... ...+.+.+.+.+ .|+..
T Consensus 84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~--~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE--PLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHhCCCeEec
Confidence 245899998874322211 12679999999999999998866443 233455555544 25543
No 90
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.38 E-value=1.8e-11 Score=105.90 Aligned_cols=125 Identities=11% Similarity=0.086 Sum_probs=91.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
.+.+|||||||+|.+++.+|..+.+|+++|. +++++.+++|++.|+. +++++...|..+... ...
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~------------~~~~~~~~d~~~~~~--~~~ 298 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL------------DNLSFAALDSAKFAT--AQM 298 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHHHH--hcC
Confidence 5679999999999999999998889999998 6699999999999875 467887766543221 112
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEecCCC
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~~~ 209 (221)
.+||+|+.++| |. .....++..+.+ ++|++.+|++...... -+.+. .+ .+|+++.+.--+
T Consensus 299 ~~~D~vi~DPP-r~-G~~~~~l~~l~~-~~p~~ivyvsc~p~Tl--aRDl~-~L-~gy~l~~~~~~D 358 (374)
T TIGR02085 299 SAPELVLVNPP-RR-GIGKELCDYLSQ-MAPKFILYSSCNAQTM--AKDIA-EL-SGYQIERVQLFD 358 (374)
T ss_pred CCCCEEEECCC-CC-CCcHHHHHHHHh-cCCCeEEEEEeCHHHH--HHHHH-Hh-cCceEEEEEEec
Confidence 46999999888 43 455667777754 6899999987643222 23332 33 678887775544
No 91
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.37 E-value=5.8e-12 Score=101.17 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=78.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++++|||+|||+|..+..++..+.+|+++|. ++++..+++++..++. ..++.+...|+...
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~~----- 116 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV-----------AGNVEFEVNDLLSL----- 116 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChhhC-----
Confidence 346789999999999999999998999999998 5699999998877653 24577777555332
Q ss_pred cCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEE
Q 027594 141 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.++||+|++++++++. .....+++.+.+++++++.+.+
T Consensus 117 -~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 -CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2689999999998763 3466778888888876655443
No 92
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.36 E-value=2.7e-11 Score=106.74 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=90.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-cccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~~ 141 (221)
++.+|||+|||+|..++.+|+.+.+|+++|. +++++.+++|+..|+. .++++...|+.+... ....
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~------------~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI------------ANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC------------CceEEEeCCHHHHHHHHHhc
Confidence 4579999999999999999998889999998 6699999999999875 578888866643211 1112
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-hcCCeEEEecCCC
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAK 209 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-~~~f~v~~v~~~~ 209 (221)
..+||+|+.+++-. .....+++.+.+ ++|++.+|++... .+...-++.+ +.+|+++.+.--+
T Consensus 360 ~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc~p---~tlard~~~l~~~gy~~~~~~~~D 422 (431)
T TIGR00479 360 GQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVSCNP---ATLARDLEFLCKEGYGITWVQPVD 422 (431)
T ss_pred CCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEcCCH---HHHHHHHHHHHHCCeeEEEEEEec
Confidence 35799999877732 334666666665 7888888886542 2232223333 5578887765544
No 93
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.36 E-value=8.7e-12 Score=100.73 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=79.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++++|||||||+|..+..+++.+. +++++|. ++++..++.+.. +++.+...|.... +
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------------~~~~~~~~d~~~~---~ 93 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------------ENVQFICGDAEKL---P 93 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------------CCCeEEecchhhC---C
Confidence 3457999999999999999998764 5899998 557777765433 2355666554432 2
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
...++||+|+++.++++..+...++..+.++|+|||.++++..
T Consensus 94 ~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 94 LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3457899999999999988899999999999999999988653
No 94
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.36 E-value=3e-11 Score=102.26 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=89.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..++.+|+.+++|+++|. +++++.+++|++.|++ +++++...|..+... ...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l------------~~v~~~~~D~~~~~~--~~~ 238 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL------------TNVQFQALDSTQFAT--AQG 238 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEcCHHHHHH--hcC
Confidence 5679999999999999999999999999998 6699999999999875 468888766543221 123
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEecCCC
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~~~ 209 (221)
.+||+|+.+++-. .....+++.+.+ ++|+..+|++....... +.+ +.+ .+|+++.+.--+
T Consensus 239 ~~~D~Vv~dPPr~--G~~~~~~~~l~~-~~~~~ivyvsc~p~t~~--rd~-~~l-~~y~~~~~~~~D 298 (315)
T PRK03522 239 EVPDLVLVNPPRR--GIGKELCDYLSQ-MAPRFILYSSCNAQTMA--KDL-AHL-PGYRIERVQLFD 298 (315)
T ss_pred CCCeEEEECCCCC--CccHHHHHHHHH-cCCCeEEEEECCcccch--hHH-hhc-cCcEEEEEEEec
Confidence 4799999988822 334455555544 57888888866543322 333 333 578887765444
No 95
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.36 E-value=6.7e-11 Score=91.14 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=91.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..+|.+++|+|||||.+++.++..+. +|+++|. +++++.+++|+++.+. +++.++.. +....
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------------~n~~vv~g---~Ap~~ 96 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------------DNLEVVEG---DAPEA 96 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------------CcEEEEec---cchHh
Confidence 45788999999999999999996654 7999997 6699999999999885 68888773 33322
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCC-eEEEecCC
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNF-NVKLVPKA 208 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f-~v~~v~~~ 208 (221)
......||.|+.... ..++.+++++...|+|||++++-... - +.....++.++ .++ ++.++.-.
T Consensus 97 L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nait-l-E~~~~a~~~~~~~g~~ei~~v~is 162 (187)
T COG2242 97 LPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAIT-L-ETLAKALEALEQLGGREIVQVQIS 162 (187)
T ss_pred hcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeec-H-HHHHHHHHHHHHcCCceEEEEEee
Confidence 112237999988754 66889999999999999998774432 1 22233444443 466 66555433
No 96
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.36 E-value=2.5e-11 Score=97.02 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=82.4
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (221)
++..+..++...+ ...++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++|+..++.
T Consensus 62 ~~p~~~~~l~~~l-------~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~--------- 125 (212)
T PRK00312 62 SQPYMVARMTELL-------ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL--------- 125 (212)
T ss_pred CcHHHHHHHHHhc-------CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC---------
Confidence 3445555555442 3446789999999999999988888779999997 6699999999988764
Q ss_pred CCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 120 ~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.++.+...|.... . ....+||+|++.... ..+...+.+.|+|||.+++...
T Consensus 126 ---~~v~~~~~d~~~~--~-~~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 126 ---HNVSVRHGDGWKG--W-PAYAPFDRILVTAAA------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ---CceEEEECCcccC--C-CcCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEEEEc
Confidence 3577766543221 1 124689999987543 2345667889999999888665
No 97
>PRK05785 hypothetical protein; Provisional
Probab=99.35 E-value=8.3e-12 Score=100.82 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=70.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||||||||..+..+++. +.+|+++|. ++|++.++.+. .....+ ...++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------------~~~~~d---~~~lp~~ 107 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------------DKVVGS---FEALPFR 107 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------------ceEEec---hhhCCCC
Confidence 3679999999999999999887 679999998 56999887531 112222 2334455
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCC
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK 174 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~ 174 (221)
+++||+|+++..+++..+.+.+++++.++|+|.
T Consensus 108 d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 108 DKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 789999999999999999999999999999994
No 98
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.35 E-value=1.2e-11 Score=102.59 Aligned_cols=122 Identities=24% Similarity=0.182 Sum_probs=85.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+|++||++-|-||..|+.+++.|| +|+.+|.+. +++.+++|++.|++. .+++++...|.-+.......
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----------~~~~~~~~~Dvf~~l~~~~~ 192 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----------LDRHRFIQGDVFKFLKRLKK 192 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----------CTCEEEEES-HHHHHHHHHH
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHHHHHHhc
Confidence 689999999999999999999998 599999855 999999999999972 25677777554332111112
Q ss_pred CCCccEEEEcccccCC------cCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH
Q 027594 142 APPFDYIIGTDVVYAE------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW 196 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~------~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~ 196 (221)
..+||+||+.||-|-. .++..|+..+.++++|||.++++.....-. .+.|++.+
T Consensus 193 ~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~-~~~l~~~~ 252 (286)
T PF10672_consen 193 GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS-PDFLLEAV 252 (286)
T ss_dssp TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS--HHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC-HHHHHHHH
Confidence 4689999999998753 246678888899999999988776654432 23445544
No 99
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.32 E-value=8.1e-11 Score=92.97 Aligned_cols=129 Identities=18% Similarity=0.223 Sum_probs=87.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.++. .++++...|..+. ..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------------~~v~~~~~d~~~~--~~ 104 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------------KNVEVIEGSAPEC--LA 104 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CCeEEEECchHHH--Hh
Confidence 36789999999999999999865 468999998 6799999999998764 4577766444221 11
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh-HHHHHHHHHh-cCCeEEEecCCC
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS-VHEQMLQMWK-SNFNVKLVPKAK 209 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~-~~~~~~~~~~-~~f~v~~v~~~~ 209 (221)
.....+|.++.. .......++..+.++|+|||.+++........ .....++..+ .++++.++...+
T Consensus 105 ~~~~~~d~v~~~----~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (196)
T PRK07402 105 QLAPAPDRVCIE----GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNR 172 (196)
T ss_pred hCCCCCCEEEEE----CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhh
Confidence 112345666542 12456889999999999999988876543221 1122333333 367777765544
No 100
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.32 E-value=8e-11 Score=94.49 Aligned_cols=156 Identities=17% Similarity=0.112 Sum_probs=97.0
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCC--
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG-- 118 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~-- 118 (221)
...|.+|+... ...++.+|||+|||.|..++.+|.+|.+|+++|+ +.+++.+.. ++++.......+
T Consensus 23 ~~~L~~~~~~~--------~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~ 91 (218)
T PRK13255 23 NPLLQKYWPAL--------ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEF 91 (218)
T ss_pred CHHHHHHHHhh--------CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccc
Confidence 55677777532 1225679999999999999999999999999998 558887632 333211000000
Q ss_pred -CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEEecC------hh--
Q 027594 119 -SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIRS------TS-- 187 (221)
Q Consensus 119 -~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~~r~------~~-- 187 (221)
.....+|++...|.-.... .....||.|+-..++.+ .+.....++.+.++|+|||++++...... +.
T Consensus 92 ~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~ 169 (218)
T PRK13255 92 EHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFS 169 (218)
T ss_pred cccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCC
Confidence 0013456666655443321 12357999998776554 45678899999999999997544222111 10
Q ss_pred -HHHHHHHHHhcCCeEEEecCCCC
Q 027594 188 -VHEQMLQMWKSNFNVKLVPKAKE 210 (221)
Q Consensus 188 -~~~~~~~~~~~~f~v~~v~~~~~ 210 (221)
..+.+.+.+...|+++.+.....
T Consensus 170 ~~~~el~~~~~~~~~i~~~~~~~~ 193 (218)
T PRK13255 170 VSDEEVEALYAGCFEIELLERQDV 193 (218)
T ss_pred CCHHHHHHHhcCCceEEEeeeccc
Confidence 13445555555688877765543
No 101
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.32 E-value=5.6e-11 Score=95.19 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=89.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh--------CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEE
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL--------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD 131 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~--------ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~d 131 (221)
....+.+|||++||||-+++.+.+. +.+|+..|+ ++|+...++...+-.+. ...++.++.
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---------~~~~~~w~~-- 165 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---------ASSRVEWVE-- 165 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---------cCCceEEEe--
Confidence 3446799999999999999988754 257999998 77999999888764441 123466666
Q ss_pred ecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 132 WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 132 w~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
++.+.++.++..||....+--+.+..++...+++..++|||||++++..-..
T Consensus 166 -~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 166 -GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred -CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 4556677788999999999888999999999999999999999988655443
No 102
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.31 E-value=4.6e-11 Score=100.71 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||||||+|.+++.+++.|.+|+++|+ +.|++.+++|+....... ....++.+...|+.. .
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~-------~~~~~~~f~~~Dl~~------l 209 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAAL-------PPEVLPKFEANDLES------L 209 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccccc-------ccccceEEEEcchhh------c
Confidence 46789999999999999999999999999998 559999999887642100 001345666555422 2
Q ss_pred CCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.++||+|++.+++++... ...+++.+.++ .+++. ++..
T Consensus 210 ~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~ 249 (315)
T PLN02585 210 SGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEKRL-IISF 249 (315)
T ss_pred CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCCEE-EEEe
Confidence 468999999999876432 44566666653 45444 4544
No 103
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.4e-11 Score=95.52 Aligned_cols=101 Identities=21% Similarity=0.283 Sum_probs=78.5
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
...++.+|||||||+|..+..+|++..+|+.+|. ++..+.|++|++..+. .+|.+.. ++...-.
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~------------~nV~v~~---gDG~~G~ 133 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY------------ENVTVRH---GDGSKGW 133 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC------------CceEEEE---CCcccCC
Confidence 4557899999999999999999999889999996 7799999999999885 4577776 4443322
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+||.|+..-. .+.+-..+.+.|++||++++-..
T Consensus 134 ~~~aPyD~I~Vtaa------a~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 PEEAPYDRIIVTAA------APEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCcCEEEEeec------cCCCCHHHHHhcccCCEEEEEEc
Confidence 34579999987633 33444566778999999887554
No 104
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3.6e-11 Score=91.58 Aligned_cols=150 Identities=18% Similarity=0.227 Sum_probs=103.6
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
.+.+|.+.|.+...+- .....+-|||||||+|+++-.+++. + +.+.+||+ +++++..++.+..|+.
T Consensus 24 DTFlLlDaLekd~~eL----~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~------ 93 (209)
T KOG3191|consen 24 DTFLLLDALEKDAAEL----KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV------ 93 (209)
T ss_pred hhhHHHHHHHHHHHHH----hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC------
Confidence 4667777776543110 0012468999999999999998865 3 45889998 7799999999999875
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC---------------------cCHHHHHHHHHHhcCCCe
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------------------HLLEPLLQTIFALSGPKT 175 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~---------------------~~~~~l~~~~~~ll~~~g 175 (221)
++.++..|....- .+++.|+++.|+++--. +-...|+..+..+|+|.|
T Consensus 94 -------~~~~V~tdl~~~l----~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~G 162 (209)
T KOG3191|consen 94 -------HIDVVRTDLLSGL----RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRG 162 (209)
T ss_pred -------ccceeehhHHhhh----ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCc
Confidence 3455554433221 24789999999885421 125667888888999999
Q ss_pred EEEEEEEecChhHHHHHHHHH-hcCCeEEEecCCCCCcc
Q 027594 176 TILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKESTM 213 (221)
Q Consensus 176 ~~~i~~~~r~~~~~~~~~~~~-~~~f~v~~v~~~~~~~~ 213 (221)
.+|+....++.. +...+.+ +++|.+.....++...+
T Consensus 163 v~Ylv~~~~N~p--~ei~k~l~~~g~~~~~~~~Rk~~~E 199 (209)
T KOG3191|consen 163 VFYLVALRANKP--KEILKILEKKGYGVRIAMQRKAGGE 199 (209)
T ss_pred eEEeeehhhcCH--HHHHHHHhhcccceeEEEEEecCCc
Confidence 999988777764 5555555 35787766665555443
No 105
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.30 E-value=9.6e-11 Score=103.63 Aligned_cols=107 Identities=18% Similarity=0.108 Sum_probs=79.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||+|||+|..++.++++ ..+|+++|. +++++.+++|++.++. .++.+...|......
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~~-- 315 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------------TNIETKALDARKVHE-- 315 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCCcccccc--
Confidence 5789999999999999998875 358999998 5699999999998875 347777766544321
Q ss_pred ccCCCccEEEEcccccCCc---------------C-------HHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 140 AVAPPFDYIIGTDVVYAEH---------------L-------LEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~---------------~-------~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
...++||+|++..+.+... . ...++..+.++|+|||.++.+...-
T Consensus 316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1126899999876643211 1 2357888889999999988765443
No 106
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.30 E-value=3.7e-12 Score=99.43 Aligned_cols=110 Identities=25% Similarity=0.305 Sum_probs=78.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-cc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~ 139 (221)
.+|.+||||.||||.+|+.++.+|| +|+++|. ++++..+++|++..+. .+++.+...|...... ..
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----------~~~~~v~~~d~~~~l~~~~ 109 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----------EDKIRVIKGDAFKFLLKLA 109 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------------GGGEEEEESSHHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----------CcceeeeccCHHHHHHhhc
Confidence 5899999999999999999999998 5999998 6699999999998775 3456666644322111 11
Q ss_pred ccCCCccEEEEcccccCCcC-HHHHHHHHH--HhcCCCeEEEEEEEec
Q 027594 140 AVAPPFDYIIGTDVVYAEHL-LEPLLQTIF--ALSGPKTTILLGYEIR 184 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~-~~~l~~~~~--~ll~~~g~~~i~~~~r 184 (221)
....+||+|++.|| |.... ...++..+. .+|+++|.+++-+..+
T Consensus 110 ~~~~~fDiIflDPP-Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 110 KKGEKFDIIFLDPP-YAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HCTS-EEEEEE--S-TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ccCCCceEEEECCC-cccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 23679999998666 55554 588888887 5799999988866554
No 107
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.29 E-value=4.1e-11 Score=96.66 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||+|||+|..+..+++.+.+|+++|. +.+++.++++....+. .+++.+...|+. ..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~------~~ 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGL-----------AGNITFEVGDLE------SL 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccCcEEEEcCch------hc
Confidence 46789999999999999999999999999998 5699999998876553 245777765532 12
Q ss_pred CCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCe
Q 027594 142 APPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKT 175 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g 175 (221)
.++||+|++++++++ ......+++.+.+++++++
T Consensus 125 ~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 125 LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 468999999999865 3345667777777654433
No 108
>PTZ00146 fibrillarin; Provisional
Probab=99.29 E-value=2.5e-10 Score=94.52 Aligned_cols=133 Identities=13% Similarity=0.077 Sum_probs=84.5
Q ss_pred cccceecchHH-HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHH
Q 027594 33 HLGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 33 ~~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~ 107 (221)
..-.++|+--. .||..|..-+.. ....++.+|||||||+|..+..++.. + .+|+++|+ +.+++.+...+..
T Consensus 104 ~~eyR~w~p~rSKlaa~i~~g~~~----l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~ 179 (293)
T PTZ00146 104 KIEYRVWNPFRSKLAAAIIGGVAN----IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK 179 (293)
T ss_pred cceeeeeCCcccHHHHHHHCCcce----eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh
Confidence 34588997632 455455433211 13457889999999999999999976 3 36999997 4455444432221
Q ss_pred hhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 108 NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 108 n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
..+|.++..|.............||+|++.- ..++....++..+.++|+|+|.+++..+.+.
T Consensus 180 --------------r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv--a~pdq~~il~~na~r~LKpGG~~vI~ika~~ 241 (293)
T PTZ00146 180 --------------RPNIVPIIEDARYPQKYRMLVPMVDVIFADV--AQPDQARIVALNAQYFLKNGGHFIISIKANC 241 (293)
T ss_pred --------------cCCCEEEECCccChhhhhcccCCCCEEEEeC--CCcchHHHHHHHHHHhccCCCEEEEEEeccc
Confidence 1245555544432211112235799998754 2455566777789999999999999766544
No 109
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.29 E-value=1.1e-10 Score=93.21 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=81.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC---CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~- 138 (221)
.++.+|||||||||..+..+++.. .+|+++|+.++ +. ..++.+.+.|+.+....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~------------~~~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DP------------IVGVDFLQGDFRDELVLK 107 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cC------------CCCcEEEecCCCChHHHH
Confidence 467899999999999999888763 47999998552 11 12477888777654211
Q ss_pred ----cccCCCccEEEEcccccCCcC-----------HHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEE
Q 027594 139 ----KAVAPPFDYIIGTDVVYAEHL-----------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK 203 (221)
Q Consensus 139 ----~~~~~~fD~Vi~~d~~y~~~~-----------~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~ 203 (221)
.....+||+|+++...+.... ...++..+.++|+|||.+++..... . ....++..++..|.-.
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~-~-~~~~~l~~l~~~f~~v 185 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG-E-GFDEYLREIRSLFTKV 185 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC-c-CHHHHHHHHHhCceEE
Confidence 123568999999764443221 2568889999999999998865332 2 2456777777777554
Q ss_pred Ee
Q 027594 204 LV 205 (221)
Q Consensus 204 ~v 205 (221)
++
T Consensus 186 ~~ 187 (209)
T PRK11188 186 KV 187 (209)
T ss_pred EE
Confidence 44
No 110
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.29 E-value=1.6e-11 Score=101.70 Aligned_cols=105 Identities=23% Similarity=0.334 Sum_probs=84.5
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++.++.|||+|||+|++++.+|..||+ |++++.++|.+.+++-++.|++ .++|.++.. ..+++
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~-----------~~rItVI~G---KiEdi 238 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNL-----------ADRITVIPG---KIEDI 238 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCc-----------cceEEEccC---ccccc
Confidence 46889999999999999999999999985 9999999999999999999977 578999884 44443
Q ss_pred cccCCCccEEEEccc---ccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 139 KAVAPPFDYIIGTDV---VYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~---~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. .+++.|+||+-+. ++++..++.-+-. ++.|+|.|.++-.
T Consensus 239 e-LPEk~DviISEPMG~mL~NERMLEsYl~A-rk~l~P~GkMfPT 281 (517)
T KOG1500|consen 239 E-LPEKVDVIISEPMGYMLVNERMLESYLHA-RKWLKPNGKMFPT 281 (517)
T ss_pred c-CchhccEEEeccchhhhhhHHHHHHHHHH-HhhcCCCCcccCc
Confidence 3 3678999998775 4456666655443 3789999987743
No 111
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.28 E-value=1.3e-10 Score=93.00 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=81.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||+|||+|..+..+++.+. +++++|. +.+++.++++.. . ..++.+...+..+..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~------------~~~i~~~~~d~~~~~--- 101 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L------------PLNIEFIQADAEALP--- 101 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c------------CCCceEEecchhcCC---
Confidence 678999999999999999887654 7999998 568888888765 1 235666665554322
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
...++||+|+++..+.+......+++.+.++|+|||.+++...
T Consensus 102 ~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 2346899999998888888899999999999999999988664
No 112
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.28 E-value=1.7e-10 Score=99.39 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=87.1
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-ccc---
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA--- 140 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~--- 140 (221)
.+||||+||+|.+|+.+++...+|+++|. +.+++.+++|+..|++ +++++...|..+... ...
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~------------~~v~~~~~d~~~~l~~~~~~~~ 275 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI------------DNVQIIRMSAEEFTQAMNGVRE 275 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEECCHHHHHHHHhhccc
Confidence 57999999999999999988778999998 5699999999999985 467887766544211 000
Q ss_pred ---------cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEecCCC
Q 027594 141 ---------VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 141 ---------~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~~~ 209 (221)
...+||+|+..+| + ....+.+++.+.+ |++.+|++.... ..-+.+. .+.++|+++.+.--+
T Consensus 276 ~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC~p~--tlarDl~-~L~~gY~l~~v~~~D 345 (362)
T PRK05031 276 FNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISCNPE--TLCENLE-TLSQTHKVERFALFD 345 (362)
T ss_pred ccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEeCHH--HHHHHHH-HHcCCcEEEEEEEcc
Confidence 0125899999887 4 3455666666654 788888876542 2223333 333489888775544
No 113
>PRK06922 hypothetical protein; Provisional
Probab=99.27 E-value=3e-11 Score=109.07 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=78.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||+|||+|..+..+++. +.+|+++|++ .|++.++++...++ .++.+...|..+... .
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-------------~~ie~I~gDa~dLp~-~ 482 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-------------RSWNVIKGDAINLSS-S 482 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------------CCeEEEEcchHhCcc-c
Confidence 35789999999999998888764 5689999985 59999998876543 245555544332211 1
Q ss_pred ccCCCccEEEEcccccCC-------------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~-------------~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
..+++||+|+++.++++. .....+++.+.++|+|||.+++...
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 235789999999877632 3567889999999999999999764
No 114
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.27 E-value=1.5e-10 Score=99.32 Aligned_cols=124 Identities=11% Similarity=0.040 Sum_probs=86.4
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-----
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK----- 139 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~----- 139 (221)
.+|||||||+|.+|+.+++...+|+++|. +++++.+++|+..|++ +++++...|..+.....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~------------~~v~~~~~d~~~~~~~~~~~~~ 266 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI------------DNVQIIRMSAEEFTQAMNGVRE 266 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEEcCHHHHHHHHhhccc
Confidence 47999999999999999988778999997 6699999999999985 46788776654422100
Q ss_pred c---c-----CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEecCCC
Q 027594 140 A---V-----APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 140 ~---~-----~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~~~ 209 (221)
. . ...||+|+..+| .....+.+++.+.+ |++.+|++...... .+.+. .+.++|+++.+.--+
T Consensus 267 ~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~ivYvsC~p~tl--aRDl~-~L~~~Y~l~~v~~~D 336 (353)
T TIGR02143 267 FRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YERILYISCNPETL--KANLE-QLSETHRVERFALFD 336 (353)
T ss_pred cccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCcEEEEEcCHHHH--HHHHH-HHhcCcEEEEEEEcc
Confidence 0 0 124899999887 34556666666654 78899887654322 23333 333458887765444
No 115
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.27 E-value=1.8e-10 Score=93.07 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=93.0
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEecchh-hHHHHHHHHHHhhhccccCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
+..+.+++....+. ...+++..+||+|||+|.+++.++.. + ..|+++|.++ ++.++.+|++++.+
T Consensus 130 TEE~V~~Vid~~~~----~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-------- 197 (328)
T KOG2904|consen 130 TEEWVEAVIDALNN----SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-------- 197 (328)
T ss_pred HHHHHHHHHHHHhh----hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh--------
Confidence 34445555443321 23445668999999999999998753 3 4699999855 99999999999987
Q ss_pred CCCCCceEEEEE----EecCCCCccccCCCccEEEEcccccCCcC--------------------------HHHHHHHHH
Q 027594 119 SDLLGSIQAVEL----DWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTIF 168 (221)
Q Consensus 119 ~~~~~~v~~~~~----dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~--------------------------~~~l~~~~~ 168 (221)
.+.+.+.+. +|..... ....++|++++|+++-..++ +..+..-..
T Consensus 198 ---~g~i~v~~~~me~d~~~~~~--l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~ 272 (328)
T KOG2904|consen 198 ---SGRIEVIHNIMESDASDEHP--LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLAT 272 (328)
T ss_pred ---cCceEEEecccccccccccc--cccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhH
Confidence 567777644 4444332 34689999999998653322 333555567
Q ss_pred HhcCCCeEEEEEEEe--cChhHHHHHHH
Q 027594 169 ALSGPKTTILLGYEI--RSTSVHEQMLQ 194 (221)
Q Consensus 169 ~ll~~~g~~~i~~~~--r~~~~~~~~~~ 194 (221)
++|+|||.+++.... +++...+.+..
T Consensus 273 R~Lq~gg~~~le~~~~~~~~~lv~~~m~ 300 (328)
T KOG2904|consen 273 RMLQPGGFEQLELVERKEHSYLVRIWMI 300 (328)
T ss_pred hhcccCCeEEEEecccccCcHHHHHHHH
Confidence 789999999998874 33433444443
No 116
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.26 E-value=7.6e-11 Score=93.74 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=68.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||+|||+|..+..+++. +.+++++|+ +++++.++++.. ++.+...+..+ +
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------------~~~~~~~d~~~----~ 100 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------------NINIIQGSLFD----P 100 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------------CCcEEEeeccC----C
Confidence 35678999999999999999876 578999998 569999987532 23444544332 2
Q ss_pred ccCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
...++||+|+++.++++.+ ....+++.+.+++ ++.++++.
T Consensus 101 ~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 101 FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 3467899999999998753 4566666666665 34555544
No 117
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.25 E-value=5.8e-11 Score=105.86 Aligned_cols=102 Identities=22% Similarity=0.188 Sum_probs=78.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++++|||||||+|..+..+++.+.+|+++|. +++++.+++ .+.. .+++.+...|..... .+.+.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~-----------~~~i~~~~~d~~~~~-~~~~~ 101 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGH-----------YKNVKFMCADVTSPD-LNISD 101 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhcc-----------CCceEEEEecccccc-cCCCC
Confidence 5679999999999999999999889999998 558765443 2221 246777776664321 22345
Q ss_pred CCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEE
Q 027594 143 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~ 180 (221)
++||+|+++.++++... ...+++.+.++|+|||.+++.
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 78999999999887544 678999999999999998875
No 118
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.25 E-value=1.7e-10 Score=88.03 Aligned_cols=148 Identities=22% Similarity=0.308 Sum_probs=98.7
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecchh-hHHHHHHHHHHhhhccccCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~ 116 (221)
++...+.+|+..++...+. .....+|||||||.|.+-..+++.|. +.+++|+++ ++++|+.-++.+++
T Consensus 46 ~ae~riv~wl~d~~~~~rv---~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~------ 116 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRV---SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF------ 116 (227)
T ss_pred cHHHHHHHHHHhhhhhhhh---cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC------
Confidence 3456778888877531111 11223999999999999999998875 489999955 99997776677765
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEccccc----C----CcCHHHHHHHHHHhcCCCeEEEEEEEecChhH
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY----A----EHLLEPLLQTIFALSGPKTTILLGYEIRSTSV 188 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y----~----~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~ 188 (221)
.+.|++.++|...+.. ...+||+|+--..+= + ..-+.--+..+.++|+|+|+++|...+...
T Consensus 117 -----~n~I~f~q~DI~~~~~---~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~-- 186 (227)
T KOG1271|consen 117 -----SNEIRFQQLDITDPDF---LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK-- 186 (227)
T ss_pred -----CcceeEEEeeccCCcc---cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH--
Confidence 4559999998877632 356777775322211 0 111234567788999999999998776554
Q ss_pred HHHHHHHHhc-CCeE-EEecC
Q 027594 189 HEQMLQMWKS-NFNV-KLVPK 207 (221)
Q Consensus 189 ~~~~~~~~~~-~f~v-~~v~~ 207 (221)
+.+.+.+.. +|.+ .+|+.
T Consensus 187 -dELv~~f~~~~f~~~~tvp~ 206 (227)
T KOG1271|consen 187 -DELVEEFENFNFEYLSTVPT 206 (227)
T ss_pred -HHHHHHHhcCCeEEEEeecc
Confidence 455555543 5765 44443
No 119
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=3.4e-10 Score=99.82 Aligned_cols=110 Identities=19% Similarity=0.120 Sum_probs=79.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+|.+|||+|||+|..++.++.+ ..+|+++|. +.+++.+++|++.++. .++.+...|.......
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------------~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------------KSIKILAADSRNLLEL 318 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CeEEEEeCChhhcccc
Confidence 36789999999999999988875 247999998 5699999999999875 4577776554332211
Q ss_pred -cccCCCccEEEEccccc------CCcC----------------HHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 139 -KAVAPPFDYIIGTDVVY------AEHL----------------LEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 139 -~~~~~~fD~Vi~~d~~y------~~~~----------------~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
....++||.|++..+.. ...+ ...++..+.++|+|||+++.+...-
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 01246899999865422 1111 3577888899999999987765443
No 120
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.24 E-value=7.2e-11 Score=95.79 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=77.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
+.++|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.+++ .+++++...|..+... +
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----------~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----------DHKINFIQSDALSALDQL 136 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEccHHHHHHHH
Confidence 6789999999999988877753 358999998 6699999999999987 4678888866644311 1
Q ss_pred c--ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 139 K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 ~--~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
. ....+||+|+... .......++..+.++++|||.+++
T Consensus 137 ~~~~~~~~fD~VfiDa---~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 137 LNNDPKPEFDFAFVDA---DKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HhCCCCCCCCEEEECC---CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 0 1146899998752 234566788888999999999776
No 121
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.24 E-value=5.9e-11 Score=92.28 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=81.5
Q ss_pred eEEEeCCCccHHHHHH-HHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceE-EEEEEecCCCCcc-ccC
Q 027594 67 RVIELGAGCGVAGFGM-ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ-AVELDWGNEDHIK-AVA 142 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~-a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~-~~~~dw~~~~~~~-~~~ 142 (221)
.|||+|||||..=-.. -..+.+||++|. +.|-+.+.+.++++.. .++. ++. ...+.++ ..+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~------------~~~~~fvv---a~ge~l~~l~d 143 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP------------LQVERFVV---ADGENLPQLAD 143 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC------------cceEEEEe---echhcCccccc
Confidence 5799999999532222 345788999997 5599999999998853 3444 444 3333333 357
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
.++|.|++.-++....+....++.+.++|+|||++++..+.+..
T Consensus 144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 89999999999999999999999999999999999987776654
No 122
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.24 E-value=9.2e-11 Score=81.25 Aligned_cols=100 Identities=22% Similarity=0.270 Sum_probs=77.8
Q ss_pred eEEEeCCCccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 67 RVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
+++|+|||+|..+..++. .+.+++++|. ++++..++++...+. ..++.+...++.+... ....+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~ 66 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------------ADNVEVLKGDAEELPP--EADES 66 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------------ccceEEEEcChhhhcc--ccCCc
Confidence 589999999999998887 4568999998 457777775433332 2456777766655432 13568
Q ss_pred ccEEEEcccccC-CcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 145 FDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 145 fD~Vi~~d~~y~-~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
||+|+++.+++. ......+++.+.+.++|+|.+++.
T Consensus 67 ~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 999999999888 888999999999999999998875
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=1.8e-10 Score=101.45 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=77.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.+|.+|||+|||+|..++.++..+ .+|+++|. +.+++.+++|++.++. .+++...|.......
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------------~~~~~~~D~~~~~~~- 308 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------------KATVIVGDARDPAQW- 308 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CeEEEEcCcccchhh-
Confidence 367899999999999999998764 48999998 5699999999998874 245555444322111
Q ss_pred ccCCCccEEEEcccccCC---------------c-------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAE---------------H-------LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~---------------~-------~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+||.|+++.+.... . ....++..+.++|+|||.++++..
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 124579999987764321 1 123678888999999999887764
No 124
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.23 E-value=2.9e-10 Score=93.96 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=79.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
+|.+|||+|||+|..++.++.+ ...|+++|. +.+++.+++|++.++. .++.+...|.... .
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~---~ 135 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------------LNVAVTNFDGRVF---G 135 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEecCCHHHh---h
Confidence 6789999999999999988764 247999998 5699999999999875 4567766554322 1
Q ss_pred ccCCCccEEEEcccccCCc----------------------CHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 140 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~----------------------~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
....+||.|+...+..... ....+++...++|+|||+++.+...-..
T Consensus 136 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 136 AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1235699999876644221 1245888888899999998876654443
No 125
>PRK06202 hypothetical protein; Provisional
Probab=99.22 E-value=1.4e-10 Score=93.89 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=72.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALL----G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~----g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
++.+|||||||+|..+..+++. | .+|+++|. ++|++.++++...++ +.+...+-..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---------------~~~~~~~~~~-- 122 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---------------VTFRQAVSDE-- 122 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---------------CeEEEEeccc--
Confidence 5679999999999998888752 3 48999998 669999988765432 2333322222
Q ss_pred CccccCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
....+++||+|+++.++++..+ ...+++.+.++++ |.+++....|.
T Consensus 123 -l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 123 -LVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred -ccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 2223578999999999998655 4578899988887 55555554444
No 126
>PLN03075 nicotianamine synthase; Provisional
Probab=99.21 E-value=2.1e-10 Score=95.28 Aligned_cols=104 Identities=12% Similarity=0.021 Sum_probs=80.4
Q ss_pred CCCeEEEeCCCcc-HHHHHHHH-h--CCEEEEecc-hhhHHHHHHHHHH-hhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 64 KGKRVIELGAGCG-VAGFGMAL-L--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 64 ~~~~vLelGcG~G-~~~l~~a~-~--ga~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++|+|||||.| +.++.+++ + +.+++++|. +++++.+++++.. .++ .+++++...|..+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----------~~rV~F~~~Da~~~~- 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----------SKRMFFHTADVMDVT- 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----------cCCcEEEECchhhcc-
Confidence 6789999999965 55666653 3 457999998 6699999999865 443 467899887665431
Q ss_pred ccccCCCccEEEEcccccC-CcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~-~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
....+||+|++.-++|+ ......+++.+.+.|+|||.+++..
T Consensus 191 --~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 191 --ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred --cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 12468999999955555 4789999999999999999998865
No 127
>PHA03412 putative methyltransferase; Provisional
Probab=99.21 E-value=1.3e-10 Score=93.23 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=66.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-----CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-----ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+.+|||+|||+|.+++.+++. ..+|+++|+ +.+++.+++|... +.+...|.....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-----------------~~~~~~D~~~~~- 110 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-----------------ATWINADALTTE- 110 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-----------------CEEEEcchhccc-
Confidence 3679999999999999998864 347999998 5599999987532 344444432211
Q ss_pred ccccCCCccEEEEcccccCCc------------CHHHHHHHHHHhcCCCeE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEH------------LLEPLLQTIFALSGPKTT 176 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~------------~~~~l~~~~~~ll~~~g~ 176 (221)
...+||+||+|+|++... ....++....+++++|+.
T Consensus 111 ---~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 111 ---FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ---ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 245899999999988321 245578888886777665
No 128
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.21 E-value=1.2e-10 Score=98.19 Aligned_cols=84 Identities=18% Similarity=0.116 Sum_probs=59.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHh-hhccccCCCCCCCCCceEEEEE-EecCCC-C
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVEL-DWGNED-H 137 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~~-dw~~~~-~ 137 (221)
++.+|||||||+|.+...++.. +.+++++|+ +.+++.|++|++.| ++ .++|.+... +-.... .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----------~~~I~~~~~~~~~~i~~~ 182 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----------NGAIRLRLQKDSKAIFKG 182 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----------cCcEEEEEccchhhhhhc
Confidence 4679999999999777666543 678999998 56999999999999 66 356666431 111111 0
Q ss_pred ccccCCCccEEEEcccccCCc
Q 027594 138 IKAVAPPFDYIIGTDVVYAEH 158 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~ 158 (221)
.......||+|++|+|+|...
T Consensus 183 i~~~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 183 IIHKNERFDATLCNPPFHASA 203 (321)
T ss_pred ccccCCceEEEEeCCCCcCcc
Confidence 111356899999999988643
No 129
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=2.8e-10 Score=100.14 Aligned_cols=110 Identities=17% Similarity=0.132 Sum_probs=81.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+|.+|||+|||+|..++.++.+ +.+|+++|. +.+++.+++|++..++ .++.+...|......
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------------~~v~~~~~Da~~l~~- 302 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------------SSIEIKIADAERLTE- 302 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhhhhh-
Confidence 36789999999999999988865 468999998 5699999999998775 357777766543321
Q ss_pred cccCCCccEEEEcccccCCc----------------------CHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 139 KAVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~----------------------~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
...++||.|++..+..... ....++..+.++|+|||.++.+...-..
T Consensus 303 -~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 303 -YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred -hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 1246799999865553211 1255688888999999998887665443
No 130
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.19 E-value=2e-10 Score=88.88 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=78.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++|.+||||-+|+|.+|+.++.+||. ++++|. ..++..+++|++.-+. ..+..+...|-.......
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----------~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----------EGEARVLRNDALRALKQL 109 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----------ccceEEEeecHHHHHHhc
Confidence 478999999999999999999999985 999998 5699999999988764 345566554433111111
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHH----HhcCCCeEEEEEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIF----ALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~----~ll~~~g~~~i~~~~ 183 (221)
...++||+|+..|| |.....+.....+. ..|+|++.+++-+..
T Consensus 110 ~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 110 GTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 11235999998655 66665544444443 459999998885544
No 131
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.19 E-value=8e-11 Score=97.23 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=77.5
Q ss_pred CCCeEEEeCCCccH----HHHHHHHh-------CCEEEEecc-hhhHHHHHHHHHHh----hhcc----ccCCCCC----
Q 027594 64 KGKRVIELGAGCGV----AGFGMALL-------GCNVITTDQ-IEVLPLLKRNVEWN----TSRI----SQMNPGS---- 119 (221)
Q Consensus 64 ~~~~vLelGcG~G~----~~l~~a~~-------ga~v~~~D~-~~~l~~~~~n~~~n----~~~~----~~~~~~~---- 119 (221)
++.+|+|+|||||- +++.++.. +.+|+++|+ +.|++.|++++-.. +++. ..+....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999995 45555543 347999998 55999999865211 1100 0000000
Q ss_pred ---CCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 120 ---DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 120 ---~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
....+|.+...|..+. +.+.++||+|++..++.+. +....+++.+.++|+|||.+++....
T Consensus 179 v~~~ir~~V~F~~~dl~~~---~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 179 VKPELKERVRFAKHNLLAE---SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred EChHHhCcCEEeeccCCCC---CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 0123567776555433 2235789999999887664 35668999999999999999986643
No 132
>PHA03411 putative methyltransferase; Provisional
Probab=99.19 E-value=2.4e-10 Score=93.76 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=72.2
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+.+|||+|||+|.+++.++.. +.+|+++|+ +.+++.+++|.. ++.+...|.... . .
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------------~v~~v~~D~~e~---~-~ 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------------EAEWITSDVFEF---E-S 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------------CCEEEECchhhh---c-c
Confidence 458999999999999988775 468999998 569999887631 244555433222 1 2
Q ss_pred CCCccEEEEcccccCCcC--------------------HHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 142 APPFDYIIGTDVVYAEHL--------------------LEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--------------------~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
..+||+|++++++++... +.+++.....+|+|+|.+++++..+
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 458999999999886211 3566677788899999988887553
No 133
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.17 E-value=4.8e-10 Score=94.77 Aligned_cols=99 Identities=22% Similarity=0.196 Sum_probs=72.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..++.+++.. .+|+++|. +++++.+++|++.++. +++.+...|....
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------------~nV~~i~gD~~~~-- 143 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------------ENVIFVCGDGYYG-- 143 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCChhhc--
Confidence 3467899999999999999998754 25999997 6699999999998774 4577666443221
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.....+||+|+++.. ...+...+.+.|+|||++++..
T Consensus 144 -~~~~~~fD~Ii~~~g------~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 -VPEFAPYDVIFVTVG------VDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred -ccccCCccEEEECCc------hHHhHHHHHHhcCCCCEEEEEe
Confidence 112357999998632 2233455677899999987754
No 134
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.17 E-value=3.5e-11 Score=94.92 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=88.6
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
=+++||||||||+.|..+-.+-.+.+++|+++ |++.+.+.=--..+.. .+-+. +.. ....+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~---------Aea~~-----Fl~----~~~~e 187 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYV---------AEAVL-----FLE----DLTQE 187 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHH---------HHHHH-----Hhh----hccCC
Confidence 36899999999999999999999999999965 8887764321111100 00010 111 02357
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe-------------cChhHHHHHHHHHh-cCCeEEEecCCC
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI-------------RSTSVHEQMLQMWK-SNFNVKLVPKAK 209 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~-------------r~~~~~~~~~~~~~-~~f~v~~v~~~~ 209 (221)
+||+|.+.|++-....++.++.....+|+|||.+.++... |...........+. .+|++..+....
T Consensus 188 r~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 188 RFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred cccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 8999999999999999999999999999999998886542 11111122234443 588887776655
Q ss_pred CC
Q 027594 210 ES 211 (221)
Q Consensus 210 ~~ 211 (221)
..
T Consensus 268 iR 269 (287)
T COG4976 268 IR 269 (287)
T ss_pred ch
Confidence 44
No 135
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.16 E-value=3.1e-10 Score=97.52 Aligned_cols=107 Identities=16% Similarity=0.080 Sum_probs=82.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+..+||||||+|...+.+|+.. ..++++|+ +.++..+.+++..+++ +++.+...|...... ..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------------~NV~~i~~DA~~ll~-~~ 188 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------------KNLLIINYDARLLLE-LL 188 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHhhh-hC
Confidence 45699999999999999999874 46999997 5699999999988875 578888866543221 23
Q ss_pred cCCCccEEEEcccccCCc------CHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~------~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.++++|.|+.+-+..+.. ..+.++..+.++|+|||.+.+....
T Consensus 189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 467899999874443322 1268999999999999999886643
No 136
>PRK04457 spermidine synthase; Provisional
Probab=99.16 E-value=2.5e-10 Score=94.11 Aligned_cols=122 Identities=12% Similarity=0.174 Sum_probs=85.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+.++|||||||+|.++..+++. +.+|+++|+ +++++.+++++..+.. .+++++...|..+. +..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----------~~rv~v~~~Da~~~--l~~ 132 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----------GERFEVIEADGAEY--IAV 132 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----------CCceEEEECCHHHH--HHh
Confidence 4578999999999999988765 467999998 6799999988765431 35677777554322 112
Q ss_pred cCCCccEEEEcccccCCc------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCe
Q 027594 141 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 201 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~ 201 (221)
...+||+|+.. . |... ....+++.+.++|+|||++++....+.. ....+++.+++.|.
T Consensus 133 ~~~~yD~I~~D-~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~ 196 (262)
T PRK04457 133 HRHSTDVILVD-G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE 196 (262)
T ss_pred CCCCCCEEEEe-C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence 24689999974 3 3221 2368999999999999998885443433 24555666666663
No 137
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=7e-11 Score=86.87 Aligned_cols=81 Identities=22% Similarity=0.314 Sum_probs=66.5
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
-.+++|++++|||||+|.+++.++..+.+ |++.|+ +++++..++|++..-+ ++.+.+.+..+...
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-------------qidlLqcdildle~ 110 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-------------QIDLLQCDILDLEL 110 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-------------hhheeeeeccchhc
Confidence 46789999999999999999999988886 999998 7799999999998754 45666766655443
Q ss_pred ccccCCCccEEEEcccccC
Q 027594 138 IKAVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~ 156 (221)
. ...||.++.++++--
T Consensus 111 ~---~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 111 K---GGIFDTAVINPPFGT 126 (185)
T ss_pred c---CCeEeeEEecCCCCc
Confidence 2 478999999998754
No 138
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=1.6e-09 Score=95.88 Aligned_cols=123 Identities=18% Similarity=0.104 Sum_probs=86.3
Q ss_pred eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhcc
Q 027594 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (221)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (221)
.+++.+..++..+.. ..+|.+|||+|||+|..++.++.+ +.+|+++|. +.+++.+++|++.+++
T Consensus 233 ~vqd~~s~l~~~~l~----------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-- 300 (445)
T PRK14904 233 SVQNPTQALACLLLN----------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-- 300 (445)
T ss_pred EEeCHHHHHHHHhcC----------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--
Confidence 566655555544432 346789999999999999888764 358999998 5699999999998875
Q ss_pred ccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC------C---------c-------CHHHHHHHHHHh
Q 027594 113 SQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA------E---------H-------LLEPLLQTIFAL 170 (221)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~------~---------~-------~~~~l~~~~~~l 170 (221)
.++.+...|..... ...+||.|+...+.-. . . ....++..+.++
T Consensus 301 ----------~~v~~~~~Da~~~~----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 366 (445)
T PRK14904 301 ----------TIIETIEGDARSFS----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL 366 (445)
T ss_pred ----------CeEEEEeCcccccc----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 45777775554321 2457999997533211 0 1 123578888999
Q ss_pred cCCCeEEEEEEEecC
Q 027594 171 SGPKTTILLGYEIRS 185 (221)
Q Consensus 171 l~~~g~~~i~~~~r~ 185 (221)
|+|||+++++...-.
T Consensus 367 lkpgG~lvystcs~~ 381 (445)
T PRK14904 367 LKPGGVLVYATCSIE 381 (445)
T ss_pred cCCCcEEEEEeCCCC
Confidence 999999988765443
No 139
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.14 E-value=4.1e-10 Score=94.74 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=75.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||||||+|..+..+++. +.+|+++|+ ++|++.+++++..... .-++..+..|..+.....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----------~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----------QLEVHGICADFTQPLALP 131 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----------CceEEEEEEcccchhhhh
Confidence 5679999999999999988866 578999998 5599999998775431 124555665554322111
Q ss_pred cc--CCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 140 AV--APPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~~--~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.. .....++++..++++ .+....+++.+.+.|+|||.+++....
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 11 112334454456665 445778999999999999999886543
No 140
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.14 E-value=2.4e-10 Score=90.96 Aligned_cols=114 Identities=22% Similarity=0.263 Sum_probs=77.0
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
+++.+...+.+.+ ...+|.+|||||||+|..+..++.+ |. +|+.+|. ++.++.+++|++..+.
T Consensus 56 s~P~~~a~~l~~L-------~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------ 122 (209)
T PF01135_consen 56 SAPSMVARMLEAL-------DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------ 122 (209)
T ss_dssp --HHHHHHHHHHT-------TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------
T ss_pred hHHHHHHHHHHHH-------hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------
Confidence 3444444555443 4568899999999999999999986 43 5999997 6799999999999875
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+|.+...|-.. ......+||.|+.+-... .+-..+.+.|++||++++...
T Consensus 123 ------~nv~~~~gdg~~---g~~~~apfD~I~v~~a~~------~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 123 ------DNVEVVVGDGSE---GWPEEAPFDRIIVTAAVP------EIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ------HSEEEEES-GGG---TTGGG-SEEEEEESSBBS------S--HHHHHTEEEEEEEEEEES
T ss_pred ------CceeEEEcchhh---ccccCCCcCEEEEeeccc------hHHHHHHHhcCCCcEEEEEEc
Confidence 478887754222 112356899999875543 223456677899999887554
No 141
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.14 E-value=1.4e-09 Score=95.80 Aligned_cols=120 Identities=15% Similarity=0.064 Sum_probs=80.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+|.+|||+|||+|..++.++.. + ++|+++|. +++++.+++|++.++. ...+.....|...... ..
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-----------~~~v~~~~~d~~~~~~-~~ 305 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-----------TIKAETKDGDGRGPSQ-WA 305 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------CeEEEEeccccccccc-cc
Confidence 6789999999999999998875 3 68999998 5699999999998875 1122223322211111 01
Q ss_pred cCCCccEEEEccc------ccCCcC----------------HHHHHHHHHHhcCCCeEEEEEEEecC----hhHHHHHHH
Q 027594 141 VAPPFDYIIGTDV------VYAEHL----------------LEPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQ 194 (221)
Q Consensus 141 ~~~~fD~Vi~~d~------~y~~~~----------------~~~l~~~~~~ll~~~g~~~i~~~~r~----~~~~~~~~~ 194 (221)
...+||.|++..+ +...+. ...++..+.++|+|||.++++...-. ..+.+.|++
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 2467999997543 222111 35688888999999999888765432 333445554
Q ss_pred H
Q 027594 195 M 195 (221)
Q Consensus 195 ~ 195 (221)
.
T Consensus 386 ~ 386 (426)
T TIGR00563 386 E 386 (426)
T ss_pred h
Confidence 3
No 142
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=99.13 E-value=1.3e-11 Score=100.49 Aligned_cols=149 Identities=22% Similarity=0.276 Sum_probs=98.5
Q ss_pred CCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHH-HHHH
Q 027594 29 PNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLL-KRNV 105 (221)
Q Consensus 29 ~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~-~~n~ 105 (221)
|+....|.++|.++..|..++.+.. .+ .-.+.+|+|||||||+|++++.+...| .++.+.|+ .+.++.. -.|+
T Consensus 85 p~vyEGg~k~wecS~dl~~~l~~e~-~~---~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~ 160 (282)
T KOG2920|consen 85 PGVYEGGLKLWECSVDLLPYLKEEI-GA---QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNI 160 (282)
T ss_pred CceeecceEEeecHHHHHHHHHHHh-hh---heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccce
Confidence 4456789999999999999998663 11 234689999999999999999999998 56999997 4455222 1222
Q ss_pred HHhhhccccCCCCCCCCCceEEEEE---EecCCCCccccCCCccEEEEcccccCCcCHHHH-HHHHHHhcCCCeEEEEEE
Q 027594 106 EWNTSRISQMNPGSDLLGSIQAVEL---DWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL-LQTIFALSGPKTTILLGY 181 (221)
Q Consensus 106 ~~n~~~~~~~~~~~~~~~~v~~~~~---dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l-~~~~~~ll~~~g~~~i~~ 181 (221)
..|.....+.+ +...-..+..- ||..... ..-.||+|+++..+|.....+.+ ......+++++|++|++.
T Consensus 161 ~~~~~~~~~~~---e~~~~~~i~~s~l~dg~~~~t---~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 161 LVNSHAGVEEK---ENHKVDEILNSLLSDGVFNHT---ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ecchhhhhhhh---hcccceeccccccccchhhhc---cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 22221100000 00001111122 5521110 01389999999999999998888 667777889999999988
Q ss_pred EecChh
Q 027594 182 EIRSTS 187 (221)
Q Consensus 182 ~~r~~~ 187 (221)
+..+..
T Consensus 235 K~~yFg 240 (282)
T KOG2920|consen 235 KKLYFG 240 (282)
T ss_pred HhhccC
Confidence 765543
No 143
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.13 E-value=9.3e-10 Score=84.89 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=66.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||||||+|.++..+++.+.+|+++|. +.+++.+++|+... +++++...|..+.. ..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~--------------~~v~ii~~D~~~~~---~~ 74 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA--------------DNLTVIHGDALKFD---LP 74 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC--------------CCEEEEECchhcCC---cc
Confidence 35679999999999999999988889999998 55999999887531 35777776554432 22
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHH-h-cCCCeEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFA-L-SGPKTTILL 179 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~-l-l~~~g~~~i 179 (221)
..+||.|+++.+++.. .+++..+.+ . +.++|.+++
T Consensus 75 ~~~~d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 75 KLQPYKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred ccCCCEEEECCCcccH---HHHHHHHHhcCCCcceEEEEE
Confidence 3469999998775432 233333333 2 235555544
No 144
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.13 E-value=8.5e-10 Score=91.52 Aligned_cols=93 Identities=12% Similarity=0.087 Sum_probs=66.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-----CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-----ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+.+|||+|||+|..+..+++. +.+|+++|+ +++++.++++. .++.+...|.. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------------~~~~~~~~d~~---~ 144 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------------PQVTFCVASSH---R 144 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------------CCCeEEEeecc---c
Confidence 4468999999999999888764 236899998 55888886541 23555554433 2
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++..+++||+|++.. .+ ..++.+.++|+|||.++++.+.
T Consensus 145 lp~~~~sfD~I~~~~---~~----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 145 LPFADQSLDAIIRIY---AP----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred CCCcCCceeEEEEec---CC----CCHHHHHhhccCCCEEEEEeCC
Confidence 334467899999753 22 3457889999999999887653
No 145
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.13 E-value=3.1e-09 Score=83.39 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=76.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...++.+|||+|||+|..+..+++.. .+|+++|.+++. . ..++.+...|..+...
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~------------~~~i~~~~~d~~~~~~ 86 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------P------------IENVDFIRGDFTDEEV 86 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------c------------CCCceEEEeeCCChhH
Confidence 44578899999999999998887653 369999985422 1 1235666666544321
Q ss_pred c-----cccCCCccEEEEccccc--C---Cc------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCe
Q 027594 138 I-----KAVAPPFDYIIGTDVVY--A---EH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 201 (221)
Q Consensus 138 ~-----~~~~~~fD~Vi~~d~~y--~---~~------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~ 201 (221)
. .....+||+|+++.+.+ . .. ..+.++..+.++|+|||++++...... ....++..+++.|.
T Consensus 87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~--~~~~~l~~l~~~~~ 164 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE--EIDEYLNELRKLFE 164 (188)
T ss_pred HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc--cHHHHHHHHHhhhc
Confidence 0 12245799999864321 1 11 136788999999999999988543221 13455566555554
Q ss_pred EEEe
Q 027594 202 VKLV 205 (221)
Q Consensus 202 v~~v 205 (221)
-..+
T Consensus 165 ~~~~ 168 (188)
T TIGR00438 165 KVKV 168 (188)
T ss_pred eEEE
Confidence 3333
No 146
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.07 E-value=8e-09 Score=83.00 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=101.9
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhcc--ccCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRI--SQMNP 117 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~--~~~~~ 117 (221)
....|.+|+.+. ...++.+||..|||.|.-.+.+|.+|.+|+++|+++ +++.+.+ +|++.- .+.+.
T Consensus 28 pnp~L~~~~~~l--------~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~ 96 (226)
T PRK13256 28 PNEFLVKHFSKL--------NINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS---QNTINYEVIHGND 96 (226)
T ss_pred CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH---HcCCCcceecccc
Confidence 366777777543 122567999999999999999999999999999854 8887754 222110 00000
Q ss_pred C-CCCCCceEEEEEEecCCCCccccCCCccEEEEccccc--CCcCHHHHHHHHHHhcCCCeEEEEEEEecC-----hh--
Q 027594 118 G-SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRS-----TS-- 187 (221)
Q Consensus 118 ~-~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y--~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~-----~~-- 187 (221)
. --....+++...|+-+.........+||+|+-.-++. .++.....++.+.++|+|||.+++..-... +.
T Consensus 97 ~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~ 176 (226)
T PRK13256 97 YKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYS 176 (226)
T ss_pred cceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCc
Confidence 0 0012467888766654432112236899987554443 467788899999999999998765443211 11
Q ss_pred -HHHHHHHHHhcCCeEEEecCCC
Q 027594 188 -VHEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 188 -~~~~~~~~~~~~f~v~~v~~~~ 209 (221)
..+.+...+...|+++.+....
T Consensus 177 v~~~e~~~lf~~~~~i~~l~~~~ 199 (226)
T PRK13256 177 VTQAELIKNFSAKIKFELIDSKQ 199 (226)
T ss_pred CCHHHHHHhccCCceEEEeeecc
Confidence 1345566667888888777543
No 147
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.07 E-value=8.9e-10 Score=86.37 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=77.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.+-.+|.|||||+|..+-.++++ ++.++++|. ++|++.+++.. .++++...|....
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------------p~~~f~~aDl~~w---- 87 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----------------PDATFEEADLRTW---- 87 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------------CCCceecccHhhc----
Confidence 34569999999999999999877 678999997 66998885421 3456655443332
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.+..++|++++|-++.+..++..++..+-..|.|||.+-+=.
T Consensus 88 ~p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 88 KPEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred CCCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence 235789999999999999999999999999999999976633
No 148
>PLN02476 O-methyltransferase
Probab=99.06 E-value=4.3e-09 Score=86.98 Aligned_cols=129 Identities=12% Similarity=0.202 Sum_probs=90.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
+.++|||||+|+|..++.+|.. +.+|+.+|. ++.++.+++|++.++. .++|++...+..+... +
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----------~~~I~li~GdA~e~L~~l 186 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----------SHKVNVKHGLAAESLKSM 186 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence 5689999999999999999863 457999998 6699999999999987 4678887754433211 1
Q ss_pred --cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHhc--CCeE
Q 027594 139 --KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFNV 202 (221)
Q Consensus 139 --~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------------~~~~~~~~~~~~--~f~v 202 (221)
.....+||+|+... ........+..+.++|+|||.+++-....+. ...+.|.+.+.. .|+.
T Consensus 187 ~~~~~~~~FD~VFIDa---~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~ 263 (278)
T PLN02476 187 IQNGEGSSYDFAFVDA---DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSI 263 (278)
T ss_pred HhcccCCCCCEEEECC---CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 01135899999762 3566788889999999999998763221111 124666666643 4655
Q ss_pred EEec
Q 027594 203 KLVP 206 (221)
Q Consensus 203 ~~v~ 206 (221)
..++
T Consensus 264 ~llP 267 (278)
T PLN02476 264 SMVP 267 (278)
T ss_pred EEEE
Confidence 5554
No 149
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.06 E-value=7.7e-10 Score=87.83 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=79.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
+.++||||||++|.-++.+|.. +++|+.+|. ++..+.+++|++..++ .++|++...+..+... +
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----------~~~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----------DDRIEVIEGDALEVLPEL 113 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----------GGGEEEEES-HHHHHHHH
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----------CCcEEEEEeccHhhHHHH
Confidence 5679999999999999999964 678999997 6699999999999887 4688888855543211 1
Q ss_pred c--ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 139 K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 ~--~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
. ...++||+|+.. .........+..+.++|+|||.+++
T Consensus 114 ~~~~~~~~fD~VFiD---a~K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 114 ANDGEEGQFDFVFID---ADKRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp HHTTTTTSEEEEEEE---STGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred HhccCCCceeEEEEc---ccccchhhHHHHHhhhccCCeEEEE
Confidence 1 113589999986 3566777888888899999999876
No 150
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.1e-08 Score=82.46 Aligned_cols=101 Identities=16% Similarity=0.057 Sum_probs=80.2
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHH-hCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMAL-LGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~-~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+|||.|.|+|.++.++|+ .|. +|+..|+ ++..+.|++|+...++ .++++....|..+..
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----------~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----------GDRVTLKLGDVREGI 159 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----------ccceEEEeccccccc
Confidence 567899999999999999999996 454 6999998 6799999999999876 455777775554433
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. ...||.|+.. ..+....+..+..+|+|||.+.+-.
T Consensus 160 ~----~~~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 160 D----EEDVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred c----ccccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEc
Confidence 2 3489999863 3567788999999999999876633
No 151
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.01 E-value=1.8e-09 Score=93.43 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=74.0
Q ss_pred CCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~-ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+.+|||++||+|..|+.+|.. ++ +|+++|. +++++.+++|++.|++ +++.+...|..... ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------------~~~~v~~~Da~~~l--~~- 122 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------------ENEKVFNKDANALL--HE- 122 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CceEEEhhhHHHHH--hh-
Confidence 468999999999999999865 43 7999998 6699999999999986 34555554442211 11
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..+||+|+..+ | ....+++....+.++++|.++++.
T Consensus 123 ~~~fD~V~lDP--~--Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 123 ERKFDVVDIDP--F--GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred cCCCCEEEECC--C--CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 35799999854 2 445678888667789999999973
No 152
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.01 E-value=3.7e-09 Score=84.24 Aligned_cols=102 Identities=19% Similarity=0.167 Sum_probs=81.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEE-EEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-LDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~-~dw~~~~~~ 138 (221)
..++|||||++.|.-++.+|.. ..++|.+|. ++..+.|++|+++.+. .++|.... +|+.+....
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----------~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----------DDRIELLLGGDALDVLSR 127 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------cceEEEEecCcHHHHHHh
Confidence 6789999999999999999864 347999998 6799999999999887 45577766 355443221
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
...++||+|+.. ......+.++..+.++|+|||.+++-
T Consensus 128 -~~~~~fDliFID---adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 128 -LLDGSFDLVFID---ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred -ccCCCccEEEEe---CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 346899999986 55677889999999999999998763
No 153
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=5.6e-09 Score=91.52 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=101.2
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
+..|.++..+.+ ...++.+|||+-||.|.+|+.+|+...+|+++|+ +++++.|++|++.|+.
T Consensus 278 ~ekl~~~a~~~~-------~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i---------- 340 (432)
T COG2265 278 AEKLYETALEWL-------ELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI---------- 340 (432)
T ss_pred HHHHHHHHHHHH-------hhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC----------
Confidence 445555665553 3346679999999999999999999999999997 7799999999999996
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-hcC
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSN 199 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-~~~ 199 (221)
.++++...+-.+..........+|.|+..+|=- ..-+.+++.+.+ ++|..++|++.-. .++.+-+..+ ..+
T Consensus 341 --~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~--G~~~~~lk~l~~-~~p~~IvYVSCNP---~TlaRDl~~L~~~g 412 (432)
T COG2265 341 --DNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRA--GADREVLKQLAK-LKPKRIVYVSCNP---ATLARDLAILASTG 412 (432)
T ss_pred --CcEEEEeCCHHHHhhhccccCCCCEEEECCCCC--CCCHHHHHHHHh-cCCCcEEEEeCCH---HHHHHHHHHHHhCC
Confidence 568888754433322211235789999876632 223456666655 5677788886643 3444444444 557
Q ss_pred CeEEEecCCCCCcccCCCC
Q 027594 200 FNVKLVPKAKESTMWGNPL 218 (221)
Q Consensus 200 f~v~~v~~~~~~~~~~~~~ 218 (221)
+.++++.--+ +|.+..
T Consensus 413 y~i~~v~~~D---mFP~T~ 428 (432)
T COG2265 413 YEIERVQPFD---MFPHTH 428 (432)
T ss_pred eEEEEEEEec---cCCCcc
Confidence 7777665444 555443
No 154
>PRK00811 spermidine synthase; Provisional
Probab=99.00 E-value=4.8e-09 Score=87.51 Aligned_cols=128 Identities=14% Similarity=0.026 Sum_probs=81.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+.++||+||||+|..+..+++. + .+|+++|+ +++++.+++++....... ...+++++...|-.... ..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-------~~d~rv~v~~~Da~~~l--~~ 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-------YDDPRVELVIGDGIKFV--AE 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-------ccCCceEEEECchHHHH--hh
Confidence 4579999999999999988876 4 47999998 569999999876432100 01356777765433221 12
Q ss_pred cCCCccEEEEc--ccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHhcCC
Q 027594 141 VAPPFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF 200 (221)
Q Consensus 141 ~~~~fD~Vi~~--d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~--r~~~~~~~~~~~~~~~f 200 (221)
..++||+|++. ++..... .-..+++.+.+.|+|||.+++-... ..........+.+++.|
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F 212 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVF 212 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHC
Confidence 35689999984 2321111 1267788999999999997763221 12233444445555544
No 155
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.97 E-value=2e-09 Score=86.72 Aligned_cols=113 Identities=19% Similarity=0.117 Sum_probs=73.8
Q ss_pred eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHH-HHHHHHHhhhccc
Q 027594 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL-LKRNVEWNTSRIS 113 (221)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~-~~~n~~~n~~~~~ 113 (221)
.+++++..|...+... ...+++++|||+|||||.++..+++.|+ +|+++|. +.++.. ++.+.+--...
T Consensus 55 ~vsr~~~kL~~~l~~~-------~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~-- 125 (228)
T TIGR00478 55 FVSRGGEKLKEALEEF-------NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLE-- 125 (228)
T ss_pred hhhhhHHHHHHHHHhc-------CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEee--
Confidence 5678899999888865 3457899999999999999999999987 5999998 445543 44332210000
Q ss_pred cCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 114 ~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
..+++ ..+|.+... .-..+|+++.| +..++..+.++|+| |.+++-
T Consensus 126 --------~~ni~--~~~~~~~~~---d~~~~DvsfiS--------~~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 126 --------RTNIR--YVTPADIFP---DFATFDVSFIS--------LISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred --------cCCcc--cCCHhHcCC---CceeeeEEEee--------hHhHHHHHHHHhCc-CeEEEE
Confidence 11222 344544321 12367777766 33357788888888 665543
No 156
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.97 E-value=2.3e-09 Score=84.65 Aligned_cols=96 Identities=21% Similarity=0.166 Sum_probs=70.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHH--hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~--~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.+|.+|||+.||.|..++.+|+ .++.|++.|. |++++.+++|++.|++ .+++.+...|..+...
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----------~~~i~~~~~D~~~~~~-- 166 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----------ENRIEVINGDAREFLP-- 166 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------------TTTEEEEES-GGG-----
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----------CCeEEEEcCCHHHhcC--
Confidence 4678999999999999999998 5667999998 7899999999999987 5678888866554432
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
...||-|+++.+- ....++..+..+++++|.+
T Consensus 167 --~~~~drvim~lp~----~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 167 --EGKFDRVIMNLPE----SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp --TT-EEEEEE--TS----SGGGGHHHHHHHEEEEEEE
T ss_pred --ccccCEEEECChH----HHHHHHHHHHHHhcCCcEE
Confidence 6789999997553 3345777788888888875
No 157
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.94 E-value=4e-09 Score=81.84 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=69.2
Q ss_pred CCCeEEEeCCCccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+|.+|||||||.|.+--.+.. ++.+.+++|+ ++.+..+. .++ +.+++.|....-. ..+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv----~rG---------------v~Viq~Dld~gL~-~f~ 72 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV----ARG---------------VSVIQGDLDEGLA-DFP 72 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH----HcC---------------CCEEECCHHHhHh-hCC
Confidence 678999999999977666654 6888999997 44443333 233 4667776655422 246
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
+.+||+||.+.++......+.++.++.++ |..++++.++
T Consensus 73 d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred CCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecC
Confidence 78999999999999888788887777655 4466666543
No 158
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.94 E-value=3.1e-08 Score=85.10 Aligned_cols=162 Identities=16% Similarity=0.152 Sum_probs=94.7
Q ss_pred EcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hh
Q 027594 18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IE 96 (221)
Q Consensus 18 ~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~ 96 (221)
+.+..+++...++++.-. -+.....|.+++.+.+ ...++ ++|||-||+|.+|+.+|....+|+++|. ++
T Consensus 160 ~~~~~~~~~~~~~sFfQv--N~~~~~~l~~~~~~~l-------~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~ 229 (352)
T PF05958_consen 160 IQDKGLSFRISPGSFFQV--NPEQNEKLYEQALEWL-------DLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEE 229 (352)
T ss_dssp ECCCTEEEEEETTS---S--BHHHHHHHHHHHHHHC-------TT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HH
T ss_pred eeccceEEEECCCcCccC--cHHHHHHHHHHHHHHh-------hcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHH
Confidence 344455666666543222 2234556666666553 22233 8999999999999999999999999997 67
Q ss_pred hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC----------c---cccCCCccEEEEcccccCCcCHHHH
Q 027594 97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH----------I---KAVAPPFDYIIGTDVVYAEHLLEPL 163 (221)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~----------~---~~~~~~fD~Vi~~d~~y~~~~~~~l 163 (221)
+++.|++|+..|++ +++++...+-.+... . ......+|+|+..||=-. .-+.+
T Consensus 230 av~~A~~Na~~N~i------------~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G--~~~~~ 295 (352)
T PF05958_consen 230 AVEDARENAKLNGI------------DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAG--LDEKV 295 (352)
T ss_dssp HHHHHHHHHHHTT--------------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT---SCHHH
T ss_pred HHHHHHHHHHHcCC------------CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCC--chHHH
Confidence 99999999999997 678887754433211 0 011236899998766332 22445
Q ss_pred HHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEecCCC
Q 027594 164 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 164 ~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~~~ 209 (221)
++.+.+ +.-.+|++.-...- .+.+ ..+.++|+++.+.--+
T Consensus 296 ~~~~~~---~~~ivYvSCnP~tl--aRDl-~~L~~~y~~~~v~~~D 335 (352)
T PF05958_consen 296 IELIKK---LKRIVYVSCNPATL--ARDL-KILKEGYKLEKVQPVD 335 (352)
T ss_dssp HHHHHH---SSEEEEEES-HHHH--HHHH-HHHHCCEEEEEEEEE-
T ss_pred HHHHhc---CCeEEEEECCHHHH--HHHH-HHHhhcCEEEEEEEee
Confidence 555543 35677776543221 2333 3445689887765444
No 159
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.91 E-value=1.8e-08 Score=84.41 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=64.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
...++.+|||||||+|.++..++..+.+|+++|+ +++++.+++++..++. .+++++...|+....
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-----------~~~v~ii~~Dal~~~--- 98 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-----------ASKLEVIEGDALKTE--- 98 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-----------CCcEEEEECCHhhhc---
Confidence 3446789999999999999999998889999998 5699999999887543 256888886654432
Q ss_pred ccCCCccEEEEcccccCCc
Q 027594 140 AVAPPFDYIIGTDVVYAEH 158 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~ 158 (221)
...||.|++|.+++-..
T Consensus 99 --~~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 99 --FPYFDVCVANVPYQISS 115 (294)
T ss_pred --ccccCEEEecCCcccCc
Confidence 24689999988866543
No 160
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.89 E-value=4.1e-08 Score=82.71 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=88.7
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
.+.||+.+..- ....+|..|||=-||||-+-+.+...|++++++|+.. |+.-++.|++.-++
T Consensus 182 ~P~lAR~mVNL-------a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i---------- 244 (347)
T COG1041 182 DPRLARAMVNL-------ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI---------- 244 (347)
T ss_pred CHHHHHHHHHH-------hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc----------
Confidence 45677776544 3566889999999999999999999999999999855 99999999998764
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc----------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH----------LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~----------~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+... .+...++...+.+|.|+.. +.|..+ ....++..+.++|++||++.++.+
T Consensus 245 --~~~~~~~~--~Da~~lpl~~~~vdaIatD-PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 245 --EDYPVLKV--LDATNLPLRDNSVDAIATD-PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred --CceeEEEe--cccccCCCCCCccceEEec-CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 22222222 2333344445569999875 446432 367788888999999999888777
No 161
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.89 E-value=1.4e-08 Score=89.47 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=70.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC------CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g------a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
+++.|||+|||+|.++..+++.+ .+|++++- +.++..+++.+..|+. .++|+++..|..+..
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----------~~~V~vi~~d~r~v~ 254 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----------GDKVTVIHGDMREVE 254 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----------TTTEEEEES-TTTSC
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----------CCeEEEEeCcccCCC
Confidence 57899999999999998887765 36999997 5577777777677776 578999995544332
Q ss_pred CccccCCCccEEEEccc--ccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 137 HIKAVAPPFDYIIGTDV--VYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~--~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
. +.++|+||+--+ +-..+..+..+....+.|+|+|.++
T Consensus 255 ---l-pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 255 ---L-PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---H-SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ---C-CCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 2 459999987432 2234467778888899999998765
No 162
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.88 E-value=2.7e-08 Score=80.97 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=76.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+.++|||||+|+|..++.+++. +.+++..|.|++++.+++ . ++|++...|+- +..
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~------~------------~rv~~~~gd~f--~~~--- 156 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE------A------------DRVEFVPGDFF--DPL--- 156 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH------T------------TTEEEEES-TT--TCC---
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc------c------------cccccccccHH--hhh---
Confidence 4468999999999999999876 457999999998888887 1 57899886664 111
Q ss_pred CCCccEEEEcccccCC--cCHHHHHHHHHHhcCCC--eEEEEEEEec
Q 027594 142 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPK--TTILLGYEIR 184 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~--g~~~i~~~~r 184 (221)
+. +|+++.+.++++. +....+++.+.+.|+|| |+++|.....
T Consensus 157 P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 157 PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 23 9999999999874 45778999999999988 9999988763
No 163
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.87 E-value=1.5e-08 Score=83.49 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=59.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|.++..+++.+.+|+++|. +.+++.+++++... +++++...|.....
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~--------------~~v~ii~~D~~~~~---- 88 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA--------------GNVEIIEGDALKVD---- 88 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC--------------CCEEEEEeccccCC----
Confidence 446789999999999999999999889999998 45999998877541 36777776664432
Q ss_pred cCCCccEEEEcccccC
Q 027594 141 VAPPFDYIIGTDVVYA 156 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~ 156 (221)
...||.|++|.+++.
T Consensus 89 -~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 89 -LPEFNKVVSNLPYQI 103 (258)
T ss_pred -chhceEEEEcCCccc
Confidence 235899999988664
No 164
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.87 E-value=2.9e-08 Score=82.28 Aligned_cols=107 Identities=13% Similarity=-0.003 Sum_probs=71.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++||+||||+|..+..+++.. .+|+++|+ +++++.+++++....... ...++++...|.... +..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~--------~~~~v~i~~~D~~~~--l~~ 141 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSY--------DDPRVDLQIDDGFKF--LAD 141 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccc--------cCCceEEEECchHHH--HHh
Confidence 34599999999999888877664 46999998 568999998875432100 123566555322111 111
Q ss_pred cCCCccEEEEcccccC--CcC--HHHHHHHHHHhcCCCeEEEEE
Q 027594 141 VAPPFDYIIGTDVVYA--EHL--LEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~--~~~--~~~l~~~~~~ll~~~g~~~i~ 180 (221)
..++||+|++..+... ... ...+++.+.++|+|||.+++.
T Consensus 142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 2468999998543211 111 467788999999999998875
No 165
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.87 E-value=3.3e-08 Score=77.88 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=83.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
...-|||||||+|+.+-.+...|...+++|+ +.|++.+.+. +..+ .+...|.+.. +++.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-e~eg----------------dlil~DMG~G--lpfrp 110 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-ELEG----------------DLILCDMGEG--LPFRP 110 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-hhhc----------------CeeeeecCCC--CCCCC
Confidence 5568999999999999999999988999998 6699999862 1112 3445666643 45567
Q ss_pred CCccEEEEcccccC---------C--cCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHH-HhcCC
Q 027594 143 PPFDYIIGTDVVYA---------E--HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM-WKSNF 200 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~---------~--~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~-~~~~f 200 (221)
..||-+|+-..+.+ . .-+..++.++..+|+++++.++-+...+....+.+... .+.+|
T Consensus 111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 89998877554432 1 12445788888999999998887766665544444433 34554
No 166
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.87 E-value=3.7e-08 Score=79.05 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=100.0
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHH-HHHHHhhh-ccccCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLK-RNVEWNTS-RISQMNP 117 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~-~n~~~n~~-~~~~~~~ 117 (221)
.+..|.+|+.+. ...++.+||..|||.|.-.+.+|.+|.+|+++|+++ +++.+. +|-..... .......
T Consensus 22 ~~p~L~~~~~~l--------~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~ 93 (218)
T PF05724_consen 22 PNPALVEYLDSL--------ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKR 93 (218)
T ss_dssp STHHHHHHHHHH--------TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEE
T ss_pred CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceee
Confidence 378888898763 233567999999999999999999999999999854 888773 22211110 0000000
Q ss_pred CCCCCCceEEEEEEecCCCCccc-cCCCccEEEEccccc--CCcCHHHHHHHHHHhcCCCeEEEE-EEEec-----Chh-
Q 027594 118 GSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILL-GYEIR-----STS- 187 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~~~~-~~~~fD~Vi~~d~~y--~~~~~~~l~~~~~~ll~~~g~~~i-~~~~r-----~~~- 187 (221)
...++|++...|. ..+.. ..++||+|+=.-++. .++..+..++.+.++|+|+|.+++ +.... .+.
T Consensus 94 --~~~~~i~~~~gDf---F~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf 168 (218)
T PF05724_consen 94 --YQAGRITIYCGDF---FELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPF 168 (218)
T ss_dssp --ETTSSEEEEES-T---TTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-
T ss_pred --ecCCceEEEEccc---ccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCC
Confidence 1134677777444 33322 224799998665544 478899999999999999999443 33211 111
Q ss_pred -H-HHHHHHHHhcCCeEEEecCCC
Q 027594 188 -V-HEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 188 -~-~~~~~~~~~~~f~v~~v~~~~ 209 (221)
+ .+.+.+.+..+|+++.+....
T Consensus 169 ~v~~~ev~~l~~~~f~i~~l~~~~ 192 (218)
T PF05724_consen 169 SVTEEEVRELFGPGFEIEELEEED 192 (218)
T ss_dssp ---HHHHHHHHTTTEEEEEEEEEE
T ss_pred CCCHHHHHHHhcCCcEEEEEeccc
Confidence 1 355566778899988776544
No 167
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.86 E-value=2.2e-08 Score=78.87 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=63.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++++|||+|||+|..+..++.. +..++++|. +++++.+++ + ++.+...+..... ....
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~---------------~~~~~~~d~~~~l-~~~~ 72 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R---------------GVNVIQGDLDEGL-EAFP 72 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c---------------CCeEEEEEhhhcc-cccC
Confidence 5679999999999998888754 567899998 557776643 1 1344554443211 1123
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcC
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSG 172 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~ 172 (221)
+++||+|+++.++++..+...+++.+.+.++
T Consensus 73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 73 DKSFDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 5689999999999998888888887777655
No 168
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.86 E-value=2.2e-08 Score=81.62 Aligned_cols=102 Identities=16% Similarity=0.038 Sum_probs=78.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~- 138 (221)
+.++|||||+++|.-++.+|.. +.+|+.+|. ++..+.|++|++..++ .++|++...+..+....
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----------~~~I~~~~G~a~e~L~~l 147 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----------AHKIDFREGPALPVLDQM 147 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeccHHHHHHHH
Confidence 4579999999999999998864 568999997 6688999999999886 57888887654332111
Q ss_pred cc---cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 139 KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 ~~---~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.. ..++||+|+.. .+.......+..+.++|+|||.+++
T Consensus 148 ~~~~~~~~~fD~iFiD---adK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 148 IEDGKYHGTFDFIFVD---ADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HhccccCCcccEEEec---CCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 00 13689999975 3456677788888899999999775
No 169
>PRK03612 spermidine synthase; Provisional
Probab=98.85 E-value=3.2e-08 Score=89.16 Aligned_cols=133 Identities=14% Similarity=0.053 Sum_probs=83.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+.++|||||||+|..+..+++.. .+|+++|+ +++++.+++|...+..... .-..+++++...|-.+. ...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-----~~~dprv~vi~~Da~~~--l~~ 369 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG-----ALDDPRVTVVNDDAFNW--LRK 369 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc-----ccCCCceEEEEChHHHH--HHh
Confidence 46799999999999998888775 47999998 6699999986432221000 00124677776443221 112
Q ss_pred cCCCccEEEEcccccCCc-----CHHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHhc-CCeEE
Q 027594 141 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKS-NFNVK 203 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~-----~~~~l~~~~~~ll~~~g~~~i~~~~--r~~~~~~~~~~~~~~-~f~v~ 203 (221)
..++||+|+++.+-.... .-+++++.+.++|+|||.+++-... ...+......+.+++ +|.+.
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 346899999863322111 1245888999999999998774321 112334445555555 47443
No 170
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.84 E-value=1.3e-08 Score=84.43 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=58.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|.++..+++.+.+|+++|. +++++.+++++.. +++++...|+.+...
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---------------~~v~~i~~D~~~~~~--- 101 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---------------DNLTIIEGDALKVDL--- 101 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---------------CceEEEEChhhcCCH---
Confidence 346789999999999999999999889999998 5699999876532 357788876654421
Q ss_pred cCCCccEEEEcccccC
Q 027594 141 VAPPFDYIIGTDVVYA 156 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~ 156 (221)
....++.|++|.+++-
T Consensus 102 ~~~~~~~vv~NlPY~i 117 (272)
T PRK00274 102 SELQPLKVVANLPYNI 117 (272)
T ss_pred HHcCcceEEEeCCccc
Confidence 1111589999988554
No 171
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.84 E-value=2.6e-08 Score=85.97 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=76.3
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 65 GKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~--ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+.+|||+.||+|..|+.+++. |+ +|++.|. +++++.+++|++.|+. .++.+...|..... ..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------------~~~~v~~~Da~~~l--~~ 110 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------------ENIEVPNEDAANVL--RY 110 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEchhHHHHH--HH
Confidence 468999999999999999987 55 5999998 6799999999999975 35666664443321 11
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
...+||+|.. |+ |. ...+++..+.+.++++|.++++.
T Consensus 111 ~~~~fDvIdl-DP-fG--s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 111 RNRKFHVIDI-DP-FG--TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred hCCCCCEEEe-CC-CC--CcHHHHHHHHHhcccCCEEEEEe
Confidence 2357999988 56 43 33578888889999999999874
No 172
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=1.4e-08 Score=80.99 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=77.8
Q ss_pred eEEEeCCCccHHHHHHHHhC----CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC-Cccc
Q 027594 67 RVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA 140 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~g----a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~-~~~~ 140 (221)
++||+|||.|.....+.+-. -+|.+.|. +.+++..++|...+- .++.....|..... ..+.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-------------~~~~afv~Dlt~~~~~~~~ 140 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-------------SRVEAFVWDLTSPSLKEPP 140 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-------------hhhcccceeccchhccCCC
Confidence 79999999998888777643 46999997 679999998877653 23343344443333 2233
Q ss_pred cCCCccEEEEccccc--CCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 141 VAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y--~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
..+++|+|.+-=++- +++.....+..+.++|||||.+++.+..++.
T Consensus 141 ~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 141 EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred CcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 467899987654433 4677889999999999999999998765554
No 173
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.83 E-value=7.2e-08 Score=78.53 Aligned_cols=123 Identities=16% Similarity=0.127 Sum_probs=80.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+|||-|.|+|.+++++++. | .+|+..|. ++-.+.|++|++.+++ .++|++...|....-
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----------~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----------DDNVTVHHRDVCEEG 105 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----------CTTEEEEES-GGCG-
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----------CCCceeEecceeccc
Confidence 5668999999999999999999974 4 47999998 6699999999999987 568999887775322
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhc-CCCeEEEEEEEecChhHHHHHHHHHh-cCCe
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTILLGYEIRSTSVHEQMLQMWK-SNFN 201 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll-~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~ 201 (221)
........+|.|+.. + ......+..+.+.| ++||.+.+-.+. -.. ..+..+.++ .+|.
T Consensus 106 ~~~~~~~~~DavfLD-l----p~Pw~~i~~~~~~L~~~gG~i~~fsP~-ieQ-v~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 106 FDEELESDFDAVFLD-L----PDPWEAIPHAKRALKKPGGRICCFSPC-IEQ-VQKTVEALREHGFT 165 (247)
T ss_dssp -STT-TTSEEEEEEE-S----SSGGGGHHHHHHHE-EEEEEEEEEESS-HHH-HHHHHHHHHHTTEE
T ss_pred ccccccCcccEEEEe-C----CCHHHHHHHHHHHHhcCCceEEEECCC-HHH-HHHHHHHHHHCCCe
Confidence 211224689999873 3 33445667777888 788886553322 122 234444444 3663
No 174
>PRK04148 hypothetical protein; Provisional
Probab=98.83 E-value=6.6e-08 Score=71.21 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=56.8
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCC
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDL 121 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~-~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~ 121 (221)
.+++||.++. ...+++++||+|||+|. ++..+++.|.+|+++|. +++++.++.+ +
T Consensus 3 ~i~~~l~~~~-------~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~------------ 59 (134)
T PRK04148 3 TIAEFIAENY-------EKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G------------ 59 (134)
T ss_pred HHHHHHHHhc-------ccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C------------
Confidence 3678887763 33467899999999996 99999999999999998 5577766543 2
Q ss_pred CCceEEEEEEecCCCCccccCCCccEEEEc
Q 027594 122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGT 151 (221)
Q Consensus 122 ~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~ 151 (221)
+.+...|+.+... ..-..+|+|.+.
T Consensus 60 ---~~~v~dDlf~p~~--~~y~~a~liysi 84 (134)
T PRK04148 60 ---LNAFVDDLFNPNL--EIYKNAKLIYSI 84 (134)
T ss_pred ---CeEEECcCCCCCH--HHHhcCCEEEEe
Confidence 3556655544322 123567888775
No 175
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.80 E-value=1e-08 Score=81.69 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=67.7
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCc
Q 027594 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~f 145 (221)
.++|+|||+|..++.+|.+--+|++||. +.|++.+++.-...-. . ...+... .+...+...+++.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~-----~------t~~~ms~---~~~v~L~g~e~SV 101 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYC-----H------TPSTMSS---DEMVDLLGGEESV 101 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccc-----c------CCccccc---cccccccCCCcce
Confidence 8999999999889999988778999998 5599977753221110 0 0001100 0111122237899
Q ss_pred cEEEEcccccCCcCHHHHHHHHHHhcCCCe-EEEE
Q 027594 146 DYIIGTDVVYAEHLLEPLLQTIFALSGPKT-TILL 179 (221)
Q Consensus 146 D~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g-~~~i 179 (221)
|+|++..++|+.+ ++.+.+.+.++|++.| .+.+
T Consensus 102 DlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 102 DLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred eeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEEE
Confidence 9999999988866 7899999999999776 4444
No 176
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.79 E-value=5.4e-08 Score=75.94 Aligned_cols=118 Identities=21% Similarity=0.319 Sum_probs=79.5
Q ss_pred eEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 67 RVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
+++|+|+|.|.+|+.+|-.- .+++++|. ..=+..++.-+..-++ +++++.+....+ .....
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------------~nv~v~~~R~E~----~~~~~ 114 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------------SNVEVINGRAEE----PEYRE 114 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------------SSEEEEES-HHH----TTTTT
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------------CCEEEEEeeecc----cccCC
Confidence 79999999999999999764 46999996 4455666665555554 468888755544 23467
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh-hHHHHHHHHHhc-CCeEEEe
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQMWKS-NFNVKLV 205 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~-~~~~~~~~~~~~-~f~v~~v 205 (221)
+||+|++--+ ..+..++..+..+++++|.+++ ++.+.. +..+.....++. +..+..+
T Consensus 115 ~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~-~KG~~~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 115 SFDVVTARAV----APLDKLLELARPLLKPGGRLLA-YKGPDAEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp -EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEE-EESS--HHHHHTHHHHHHCCCEEEEEE
T ss_pred CccEEEeehh----cCHHHHHHHHHHhcCCCCEEEE-EcCCChHHHHHHHHhHHHHhCCEEeee
Confidence 9999998654 6788999999999999999765 544332 223333444443 4444444
No 177
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.73 E-value=1e-07 Score=74.91 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=72.6
Q ss_pred eEEEeCCCccHHHHHHHHhCCE--EEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-----
Q 027594 67 RVIELGAGCGVAGFGMALLGCN--VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI----- 138 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~--v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~----- 138 (221)
+|||||||||--+..+|+.=.+ -.-+|.++ .+..++..+...+.. +-.....+|.......
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-----------Nv~~P~~lDv~~~~w~~~~~~ 96 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-----------NVRPPLALDVSAPPWPWELPA 96 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-----------ccCCCeEeecCCCCCcccccc
Confidence 6999999999999999987554 45688744 556666666665431 1112234444433111
Q ss_pred cccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.....+||.|++..+++- .+..+.|++...++|++||.+++=
T Consensus 97 ~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 97 PLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 123568999999999886 567889999999999999998773
No 178
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.72 E-value=1.2e-07 Score=76.83 Aligned_cols=95 Identities=24% Similarity=0.190 Sum_probs=74.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.+..++||||+|.|-++..++.+-.+|++|+.+. |...++ +-+. .-+ ...+|.+.
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~----~kg~------------~vl--~~~~w~~~------ 148 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLS----KKGF------------TVL--DIDDWQQT------ 148 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHH----hCCC------------eEE--ehhhhhcc------
Confidence 3567899999999999999999989999999854 544443 3332 111 23345432
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
+.+||+|.+-.++=.......|++.+.+.|+|+|+++++.
T Consensus 149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 4589999999999888889999999999999999999874
No 179
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.70 E-value=1.4e-07 Score=75.35 Aligned_cols=120 Identities=17% Similarity=0.368 Sum_probs=77.2
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHH-hCCE-EEEecchh-hHHHHHHHHHHhhhcc---c---------cCCCCC------
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQIE-VLPLLKRNVEWNTSRI---S---------QMNPGS------ 119 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~-~ga~-v~~~D~~~-~l~~~~~n~~~n~~~~---~---------~~~~~~------ 119 (221)
..+.++.+|||||-+|.+++.+|+ .|++ |+++|++. .++.|++|++.-.-.. . +..|-+
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 567889999999999999999996 4775 99999954 8999999887422110 0 000000
Q ss_pred -----CCCCceEEEEEEe--cCCCCccccCCCccEEEEcccc------cCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 120 -----DLLGSIQAVELDW--GNEDHIKAVAPPFDYIIGTDVV------YAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 120 -----~~~~~v~~~~~dw--~~~~~~~~~~~~fD~Vi~~d~~------y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
...+++.+..... ...+.+....+.||+|+|-.+- ++.+-+..+++.+.++|.|||++++-
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0011111111100 1111122346789999886553 23566889999999999999998874
No 180
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.69 E-value=7.5e-08 Score=75.01 Aligned_cols=117 Identities=17% Similarity=0.157 Sum_probs=75.8
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-----------EEEecc-hhhHHHHHHHHHHhhh
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-----------VITTDQ-IEVLPLLKRNVEWNTS 110 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~-----------v~~~D~-~~~l~~~~~n~~~n~~ 110 (221)
..+|.-|..-. ...++..|||--||+|.+.+.+|..+.. +++.|+ +++++.+++|+...+.
T Consensus 14 ~~lA~~ll~la-------~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 14 PTLAAALLNLA-------GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV 86 (179)
T ss_dssp HHHHHHHHHHT-------T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHh-------CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence 34555555442 3346779999999999999999876543 679998 6699999999998776
Q ss_pred ccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC--------cCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--------HLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~--------~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
...+.+...|..... .....+|+|++++|+-.. .....+++.+.+++++ ..+++..
T Consensus 87 -----------~~~i~~~~~D~~~l~---~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 87 -----------EDYIDFIQWDARELP---LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp -----------CGGEEEEE--GGGGG---GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred -----------CCceEEEecchhhcc---cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 356777765554433 345689999999886542 2344567777778888 4444433
No 181
>PRK01581 speE spermidine synthase; Validated
Probab=98.68 E-value=1.1e-07 Score=81.04 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=69.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++||+||||+|.....+.+.. .+|+++|+ +++++.+++....... +.+.-..+++++...|-... +..
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~-----~~~~~~DpRV~vvi~Da~~f--L~~ 222 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSL-----NKSAFFDNRVNVHVCDAKEF--LSS 222 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchh-----ccccCCCCceEEEECcHHHH--HHh
Confidence 45699999999999877777764 47999998 5699999962111000 00000135777776544332 122
Q ss_pred cCCCccEEEEcccccCCc-------CHHHHHHHHHHhcCCCeEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEH-------LLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~-------~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
..++||+|++.-+ .+. .-..+++.+.+.|+|||++++-
T Consensus 223 ~~~~YDVIIvDl~--DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 223 PSSLYDVIIIDFP--DPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cCCCccEEEEcCC--CccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 3568999997621 111 1256889999999999997664
No 182
>PLN02366 spermidine synthase
Probab=98.68 E-value=3e-07 Score=77.49 Aligned_cols=128 Identities=15% Similarity=0.067 Sum_probs=81.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+.++||+||||.|.....+++.. .+|+++|+ +++++.+++.+...... -..++++++..|-..... ..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--------~~dpRv~vi~~Da~~~l~-~~ 161 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--------FDDPRVNLHIGDGVEFLK-NA 161 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--------cCCCceEEEEChHHHHHh-hc
Confidence 46799999999999998888763 46999998 55999999987642210 013578777754221111 11
Q ss_pred cCCCccEEEEcc--cccCCc--CHHHHHHHHHHhcCCCeEEEEEEE--ecChhHHHHHHHHHhcCC
Q 027594 141 VAPPFDYIIGTD--VVYAEH--LLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNF 200 (221)
Q Consensus 141 ~~~~fD~Vi~~d--~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~--~r~~~~~~~~~~~~~~~f 200 (221)
..++||+|++.- +..... .-..+++.+.++|+|+|.+.+-.. .........+.+.+++.|
T Consensus 162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 246899999742 111111 135688999999999999764211 222334455566666666
No 183
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.68 E-value=1.8e-07 Score=74.48 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=80.5
Q ss_pred CCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+++++|||+|.|++|+.+|-.. .+||.+|. ..=+..++.-...-++ +++++.+.. .+....
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------------~nv~i~~~R---aE~~~~- 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------------ENVEIVHGR---AEEFGQ- 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------------CCeEEehhh---Hhhccc-
Confidence 6899999999999999998553 45999995 4455555555555444 467777733 333221
Q ss_pred CCC-ccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-hcCCeEEEecCCC
Q 027594 142 APP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAK 209 (221)
Q Consensus 142 ~~~-fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-~~~f~v~~v~~~~ 209 (221)
..+ ||+|.+--+ ..+..+...+..++++||.++........+......... ..++.++.+..-.
T Consensus 132 ~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~ 197 (215)
T COG0357 132 EKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLT 197 (215)
T ss_pred ccccCcEEEeehc----cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEee
Confidence 123 999998544 778899999999999999865432222223233333333 3366665554433
No 184
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.66 E-value=4.1e-07 Score=77.08 Aligned_cols=98 Identities=21% Similarity=0.168 Sum_probs=77.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.|.+|||+-||.|.+++.+|+.|+. |+++|+ |++++.+++|+.+|+. .+.+....+|-..... .
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----------~~~v~~i~gD~rev~~---~ 253 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----------EGRVEPILGDAREVAP---E 253 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----------cceeeEEeccHHHhhh---c
Confidence 5889999999999999999999986 999998 7899999999999997 4557777755443322 2
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
...+|-|+++-+- ....++....++++++|.+..
T Consensus 254 ~~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 254 LGVADRIIMGLPK----SAHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred cccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEE
Confidence 2689999997553 344566677777888888665
No 185
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.66 E-value=4.8e-08 Score=74.47 Aligned_cols=78 Identities=21% Similarity=0.037 Sum_probs=56.4
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCc
Q 027594 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~f 145 (221)
.|+|+.||.|--++.+|+.+.+|+++|+ +.-++.++.|++.-+. .++|.++..||.+..........|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv-----------~~~I~~i~gD~~~~~~~~~~~~~~ 70 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGV-----------ADNIDFICGDFFELLKRLKSNKIF 70 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT------------GGGEEEEES-HHHHGGGB------
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCCHHHHHhhccccccc
Confidence 6999999999999999999999999998 6699999999999876 478999999987753221112228
Q ss_pred cEEEEccccc
Q 027594 146 DYIIGTDVVY 155 (221)
Q Consensus 146 D~Vi~~d~~y 155 (221)
|+|+++||.-
T Consensus 71 D~vFlSPPWG 80 (163)
T PF09445_consen 71 DVVFLSPPWG 80 (163)
T ss_dssp SEEEE---BS
T ss_pred cEEEECCCCC
Confidence 9999998753
No 186
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.63 E-value=1.1e-06 Score=81.94 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=98.1
Q ss_pred eEEEEEcCeEEEEeeCCCCCcccceec-----c--hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027594 13 VINLEVLGHQLQFSQDPNSKHLGTTVW-----D--ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL 85 (221)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W-----~--~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ 85 (221)
.+.+.+.....+|..+........+-| + --..||.-|.... ....++..++|-+||+|.+.+.+|..
T Consensus 138 ~i~~~~~~~~~~l~ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a------~w~~~~~~l~DP~CGSGTilIEAa~~ 211 (702)
T PRK11783 138 RINARLNKGEATISLDLSGESLHQRGYRQATGEAPLKENLAAAILLRS------GWPQEGTPLLDPMCGSGTLLIEAAMM 211 (702)
T ss_pred EEEEEEeCCEEEEEEECCCCchhhccCccCCCCCCCcHHHHHHHHHHc------CCCCCCCeEEccCCCccHHHHHHHHH
Confidence 466666777787777653222211222 2 2335666555432 12235679999999999999988763
Q ss_pred C--------------------------------------------CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 86 G--------------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 86 g--------------------------------------------a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
+ .+++++|+ +.+++.+++|+..+++
T Consensus 212 ~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~---------- 281 (702)
T PRK11783 212 AADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGV---------- 281 (702)
T ss_pred HhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCC----------
Confidence 1 25899998 6699999999999987
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccCC----cCHHHHHHHHHHhcC---CCeEEEEEEE
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSG---PKTTILLGYE 182 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~----~~~~~l~~~~~~ll~---~~g~~~i~~~ 182 (221)
.+.+.+...|+.+.... ...++||+|++|+|+... ..+..+...+.+.++ +|+.+++...
T Consensus 282 -~~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 282 -AELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred -CcceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 45678877776554321 123479999999886542 234445555544443 7888776554
No 187
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.60 E-value=4.1e-07 Score=75.78 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=49.3
Q ss_pred CCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHh-hhccccCCCCCCCCCceEEEEEEecCC--CCc
Q 027594 65 GKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNE--DHI 138 (221)
Q Consensus 65 ~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~~dw~~~--~~~ 138 (221)
..++||||||. .+..|..++ .|-++++||+ +.+++.|++|++.| .+ .++|++....=... ..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----------~~~I~l~~~~~~~~i~~~i 171 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----------ESRIELRKQKNPDNIFDGI 171 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------------TTTEEEEE--ST-SSTTTS
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----------ccceEEEEcCCccccchhh
Confidence 56899999998 566777765 4789999998 55999999999999 76 57788765321111 111
Q ss_pred cccCCCccEEEEcccccCCc
Q 027594 139 KAVAPPFDYIIGTDVVYAEH 158 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~ 158 (221)
....+.||+.+||+|+|...
T Consensus 172 ~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 172 IQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp TT--S-EEEEEE-----SS-
T ss_pred hcccceeeEEecCCccccCh
Confidence 22346899999999999744
No 188
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.60 E-value=5.6e-07 Score=73.89 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=55.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|.++..+++.+.+|+++|. +.+++.++.+... .+++++...|......
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--------------~~~v~v~~~D~~~~~~--- 89 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--------------YERLEVIEGDALKVDL--- 89 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--------------CCcEEEEECchhcCCh---
Confidence 346789999999999999999999989999998 5588888877643 1357777755543321
Q ss_pred cCCCcc---EEEEccccc
Q 027594 141 VAPPFD---YIIGTDVVY 155 (221)
Q Consensus 141 ~~~~fD---~Vi~~d~~y 155 (221)
..|| +|++|.+++
T Consensus 90 --~~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 90 --PDFPKQLKVVSNLPYN 105 (253)
T ss_pred --hHcCCcceEEEcCChh
Confidence 2455 888877644
No 189
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.57 E-value=4.9e-06 Score=66.88 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=93.1
Q ss_pred CcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecchh-hHHHHHHHHHHh
Q 027594 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWN 108 (221)
Q Consensus 32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~-~l~~~~~n~~~n 108 (221)
.+-+...++.++.=+.|+.++ .+..|++||=||=. =+.|+++|.. .++|+.+|+++ .++.+++.+++.
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~--------gdL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~ 90 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAER--------GDLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEE 90 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHT--------T-STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhc--------CcccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc
Confidence 455777888889989999887 78899999999833 3667776654 46799999966 999999999998
Q ss_pred hhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCC-CeEEEEEEEecCh-
Q 027594 109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGP-KTTILLGYEIRST- 186 (221)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~-~g~~~i~~~~r~~- 186 (221)
++ ++++...|..+.... ...++||+++. ||.|-.+.+.-++....+.|+. |+..|+++..+..
T Consensus 91 gl-------------~i~~~~~DlR~~LP~-~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s 155 (243)
T PF01861_consen 91 GL-------------PIEAVHYDLRDPLPE-ELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS 155 (243)
T ss_dssp T---------------EEEE---TTS---T-TTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--
T ss_pred CC-------------ceEEEEecccccCCH-HHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc
Confidence 86 378887777655332 23579999996 5558888888999988888885 4478888877763
Q ss_pred -hHHHHHHHHH-hcCCeEEEec
Q 027594 187 -SVHEQMLQMW-KSNFNVKLVP 206 (221)
Q Consensus 187 -~~~~~~~~~~-~~~f~v~~v~ 206 (221)
..+..+.+.+ +.+|.++.+-
T Consensus 156 ~~~~~~~Q~~l~~~gl~i~dii 177 (243)
T PF01861_consen 156 PDKWLEVQRFLLEMGLVITDII 177 (243)
T ss_dssp HHHHHHHHHHHHTS--EEEEEE
T ss_pred HHHHHHHHHHHHHCCcCHHHHH
Confidence 2233444444 4588887653
No 190
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.53 E-value=7.2e-07 Score=75.85 Aligned_cols=133 Identities=15% Similarity=0.058 Sum_probs=78.3
Q ss_pred ecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccC
Q 027594 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQM 115 (221)
Q Consensus 38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~ 115 (221)
=|--+.++..|+.... ...++.+|||||||-|---.=+...+ ..++++|+ .++++.|++..........
T Consensus 43 NwvKs~LI~~~~~~~~-------~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~-- 113 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVK-------QNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNN-- 113 (331)
T ss_dssp HHHHHHHHHHHCHCCC-------CTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT--
T ss_pred HHHHHHHHHHHHHhhh-------ccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccc--
Confidence 3666777777775331 22377899999999876555555455 46999998 4589999887743221000
Q ss_pred CCCCCCCCceEEEEE-EecCCCC------ccccCCCccEEEEcccccC----CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 116 NPGSDLLGSIQAVEL-DWGNEDH------IKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 116 ~~~~~~~~~v~~~~~-dw~~~~~------~~~~~~~fD~Vi~~d~~y~----~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
....+..+... -..+... ......+||+|-+--.+|. .+....++..+..+|+|||+++.+.+.
T Consensus 114 ----~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 114 ----SKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp -----HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ----cccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 00011112111 1122211 1111359999988766654 455777999999999999999887764
No 191
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.50 E-value=2.7e-06 Score=66.94 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=75.8
Q ss_pred eecchHHH--HHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccc
Q 027594 37 TVWDASVV--FVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS 113 (221)
Q Consensus 37 ~~W~~~~~--la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~ 113 (221)
..||..++ +.+||.+. .++..|-|+|||-+.++-.+ ..+.+|...|. +. |
T Consensus 53 ~~WP~nPvd~iI~~l~~~----------~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n----- 105 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKR----------PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------N----- 105 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS-----------TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S-----
T ss_pred hcCCCCcHHHHHHHHHhc----------CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------C-----
Confidence 46887664 55566532 24579999999999888443 23456888885 21 1
Q ss_pred cCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHH
Q 027594 114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQML 193 (221)
Q Consensus 114 ~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~ 193 (221)
+.| ...|. ...+..++..|+++.+=.+-. .++..++.+..|+|+|||.++|+.....-.-.+.|.
T Consensus 106 ---------~~V--tacdi---a~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~ 170 (219)
T PF05148_consen 106 ---------PRV--TACDI---ANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFI 170 (219)
T ss_dssp ---------TTE--EES-T---TS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHH
T ss_pred ---------CCE--EEecC---ccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHH
Confidence 223 33333 334456789999998866555 458899999999999999999988765544567888
Q ss_pred HHHhc-CCeEEE
Q 027594 194 QMWKS-NFNVKL 204 (221)
Q Consensus 194 ~~~~~-~f~v~~ 204 (221)
+.++. ||.+..
T Consensus 171 ~~~~~~GF~~~~ 182 (219)
T PF05148_consen 171 KALKKLGFKLKS 182 (219)
T ss_dssp HHHHCTTEEEEE
T ss_pred HHHHHCCCeEEe
Confidence 88865 898864
No 192
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.49 E-value=1.4e-06 Score=66.65 Aligned_cols=84 Identities=12% Similarity=-0.006 Sum_probs=62.4
Q ss_pred EEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHH
Q 027594 90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIF 168 (221)
Q Consensus 90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~ 168 (221)
+++|. ++|++.++++...... ....++++...|. ..++..+++||+|+++.++++..+...+++.+.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---------~~~~~i~~~~~d~---~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~ 68 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---------SCYKCIEWIEGDA---IDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMY 68 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---------cCCCceEEEEech---hhCCCCCCCeeEEEecchhhcCCCHHHHHHHHH
Confidence 47898 5699999876543221 0023577777544 344455678999999999988889999999999
Q ss_pred HhcCCCeEEEEEEEecC
Q 027594 169 ALSGPKTTILLGYEIRS 185 (221)
Q Consensus 169 ~ll~~~g~~~i~~~~r~ 185 (221)
++|+|||.+++......
T Consensus 69 rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 69 RVLKPGSRVSILDFNKS 85 (160)
T ss_pred HHcCcCeEEEEEECCCC
Confidence 99999999988765443
No 193
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.49 E-value=6.1e-07 Score=70.81 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=82.2
Q ss_pred CeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
..+||||||.|-..+.+|.... .++++|. ...+..+.+.+...++ .|+.+...|..........+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------------~Nv~~~~~da~~~l~~~~~~ 86 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL------------KNVRFLRGDARELLRRLFPP 86 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT------------SSEEEEES-CTTHHHHHSTT
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc------------cceEEEEccHHHHHhhcccC
Confidence 3899999999999999987754 5999997 5678888777777765 68888885543322112235
Q ss_pred CCccEEEEc--ccccCCc------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhc---CCeEE
Q 027594 143 PPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS---NFNVK 203 (221)
Q Consensus 143 ~~fD~Vi~~--d~~y~~~------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~---~f~v~ 203 (221)
+++|-|..+ ||..... .-+.++..+.++|+|||.+.+..-. ....+..++.+.+ .|+..
T Consensus 87 ~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 87 GSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--EEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp TSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHHHHHSTTEEEE
T ss_pred CchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHhcCcCeEEc
Confidence 788888654 4433222 3567999999999999999886543 3344455555544 46554
No 194
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.1e-06 Score=68.79 Aligned_cols=109 Identities=19% Similarity=0.258 Sum_probs=74.2
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CCE---EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-GCN---VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-ga~---v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
+..+|.+.||+|+|+|.++-.++++ |+. ++++|. ++.++..++|++.....-.. ...-...++.+.. ++.
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~--~~~~~~~~l~ivv---GDg 153 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSES--SSKLKRGELSIVV---GDG 153 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchh--hhhhccCceEEEe---CCc
Confidence 3568999999999999999888854 543 489995 89999999999875421000 0000134555555 444
Q ss_pred CCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 136 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 136 ~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
........+||.|.+. .....+.+.+-..|+++|.+++-
T Consensus 154 r~g~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 154 RKGYAEQAPYDAIHVG------AAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cccCCccCCcceEEEc------cCccccHHHHHHhhccCCeEEEe
Confidence 4344456899999776 44455666677778899888774
No 195
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.47 E-value=7.7e-07 Score=70.84 Aligned_cols=129 Identities=19% Similarity=0.165 Sum_probs=85.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+|.+|||-..|.|..++.+++.|| +|+.++. +.++++++-|-=..++. ...+.++..|--+.- ...
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~----------~~~i~iilGD~~e~V-~~~ 201 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF----------EIAIKIILGDAYEVV-KDF 201 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc----------ccccEEecccHHHHH-hcC
Confidence 3789999999999999999999999 7888886 66888877553221110 124566553332211 123
Q ss_pred cCCCccEEEEcccccCCc---CHHHHHHHHHHhcCCCeEEEEE--EE---ecChhHHHHHHHHHhc-CCeE
Q 027594 141 VAPPFDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTTILLG--YE---IRSTSVHEQMLQMWKS-NFNV 202 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~---~~~~l~~~~~~ll~~~g~~~i~--~~---~r~~~~~~~~~~~~~~-~f~v 202 (221)
.+.+||+||-.++=+..+ .-+.|-+.+.++|+|||.++-- .+ -|..+......+.+.+ +|.+
T Consensus 202 ~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 202 DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCcee
Confidence 467899999877766532 3567889999999999997531 11 1333444555566654 8874
No 196
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=2e-06 Score=75.57 Aligned_cols=125 Identities=12% Similarity=0.109 Sum_probs=90.8
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (221)
++.+|-.++.+++ ....++.+||+-||||.+|+++|+.-.+|+++++ +++++-|+.|+..|++
T Consensus 367 ~aevLys~i~e~~-------~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi--------- 430 (534)
T KOG2187|consen 367 AAEVLYSTIGEWA-------GLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI--------- 430 (534)
T ss_pred HHHHHHHHHHHHh-------CCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc---------
Confidence 5778888888774 4556789999999999999999999899999997 7899999999999997
Q ss_pred CCCCceEEEEEEecCCCC-c-cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 120 DLLGSIQAVELDWGNEDH-I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 120 ~~~~~v~~~~~dw~~~~~-~-~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
.+.+++...-.+... + ...-.+-++|...|+-. ......+++.+...-++.-.+|++...+.
T Consensus 431 ---sNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 431 ---SNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred ---cceeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCHHH
Confidence 677777742112111 1 01112345554455544 45667788888888778888888776543
No 197
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.40 E-value=2e-05 Score=67.55 Aligned_cols=148 Identities=13% Similarity=0.052 Sum_probs=99.1
Q ss_pred eEEEEEcCeEEEEeeCCCCCcccceecch-------HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027594 13 VINLEVLGHQLQFSQDPNSKHLGTTVWDA-------SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL 85 (221)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~~-------~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ 85 (221)
.|.+.+.....+|..+.+......+=|+- -.-||.-|..- ..-..+..++|-=||+|.+.|.+|.+
T Consensus 140 ~i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~l-------agw~~~~pl~DPmCGSGTi~IEAAl~ 212 (381)
T COG0116 140 RINVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLL-------AGWKPDEPLLDPMCGSGTILIEAALI 212 (381)
T ss_pred EEEEEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHH-------cCCCCCCccccCCCCccHHHHHHHHh
Confidence 35566777788887776544433333432 12344444333 23345578999999999999999988
Q ss_pred CC-----------------------------------------EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCC
Q 027594 86 GC-----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLG 123 (221)
Q Consensus 86 ga-----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 123 (221)
++ .+++.|+ +.+++.|+.|++..+. .+
T Consensus 213 ~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv-----------~d 281 (381)
T COG0116 213 AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGV-----------GD 281 (381)
T ss_pred ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC-----------Cc
Confidence 74 3779998 6699999999999987 57
Q ss_pred ceEEEEEEecCCCCccccCCCccEEEEcccccC----CcC----HHHHHHHHHHhcCCCeEEEEEE
Q 027594 124 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EHL----LEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 124 ~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~----~~~----~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.|.+.+.|..+.... .+.+|+||+|+|+-. ... ...+.+++++.++.-+..+++.
T Consensus 282 ~I~f~~~d~~~l~~~---~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 282 LIEFKQADATDLKEP---LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred eEEEEEcchhhCCCC---CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 888888666554322 268999999998532 222 3344555556666666655543
No 198
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.40 E-value=1.4e-06 Score=72.46 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=73.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC---Cc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~---~~ 138 (221)
++..+++||||-|---+-.-+.|. +++++|+.+ .++.+++.-+.....-.. ..+ .+.+...|-.... ..
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~-----~~f-~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKK-----FIF-TAVFIAADCFKERLMDLL 190 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhc-----ccc-eeEEEEeccchhHHHHhc
Confidence 567899999999988777777776 499999977 899998766643210000 000 1333332221111 11
Q ss_pred cccCCCccEEEEcccccC----CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 139 KAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~----~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
...+++||+|-+-=++|. .+...-+++.+.++|+|||+++-..+.
T Consensus 191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 122345999977655553 455777899999999999998776654
No 199
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.37 E-value=3e-06 Score=68.26 Aligned_cols=107 Identities=12% Similarity=0.001 Sum_probs=76.7
Q ss_pred CeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
..+||||||.|-.-+.+|+...+ ++++|+ ...+..+.+.+.+.++ .|+.+...|-......-.++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------------~Nlri~~~DA~~~l~~~~~~ 117 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------------KNLRLLCGDAVEVLDYLIPD 117 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------------CcEEEEcCCHHHHHHhcCCC
Confidence 58999999999999999998875 899997 5677777776766654 36777765443332222334
Q ss_pred CCccEEEEc--ccccCCc------CHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 143 PPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 143 ~~fD~Vi~~--d~~y~~~------~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
++.|-|..+ ||-.-.. ..+.+++.+.+.|+|||.+.++....
T Consensus 118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 478877554 4543222 25679999999999999999977543
No 200
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.35 E-value=4.1e-06 Score=63.44 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=84.0
Q ss_pred eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhhcc
Q 027594 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRI 112 (221)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga---~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (221)
.+=|+|..+|+-+.+.. ....|+-|||+|.|||.++-++.++|. .++++++ ++-+..+.+..
T Consensus 28 aI~PsSs~lA~~M~s~I-------~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------- 93 (194)
T COG3963 28 AILPSSSILARKMASVI-------DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------- 93 (194)
T ss_pred eecCCcHHHHHHHHhcc-------CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------
Confidence 45678888888887663 344788999999999999999998875 4899997 67776666532
Q ss_pred ccCCCCCCCCCceEEEEEEecCCCC-c-cccCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEE
Q 027594 113 SQMNPGSDLLGSIQAVELDWGNEDH-I-KAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~dw~~~~~-~-~~~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+.++++++|--+... + ......||.|+++=++-+.+. --.+++.+...|.+||.++....
T Consensus 94 ----------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 94 ----------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred ----------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 223344433222210 1 123568999999987776443 34577778888889888775443
No 201
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.33 E-value=1.6e-06 Score=69.00 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=76.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
..+.++|||||.|.++-.+...|. +++.+|.+. |++.++..-. + .+.... -.++.+.+...
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p---------------~i~~~~-~v~DEE~Ldf~ 134 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-P---------------SIETSY-FVGDEEFLDFK 134 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-C---------------ceEEEE-Eecchhccccc
Confidence 346899999999999888877776 599999854 8887764211 1 122221 12455556667
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
++++|+||++-.+++.++++..+..|+..|||+|.++-+
T Consensus 135 ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 135 ENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred ccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 889999999999999999999999999999999987643
No 202
>PLN02823 spermine synthase
Probab=98.32 E-value=6.4e-06 Score=70.23 Aligned_cols=126 Identities=16% Similarity=0.183 Sum_probs=79.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++||.||+|.|..+..+.+.. .+|+++|+ +++++.+++.+..+... -..+++++...|-... +..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--------~~dprv~v~~~Da~~~--L~~ 172 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--------FCDKRLELIINDARAE--LEK 172 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--------ccCCceEEEEChhHHH--Hhh
Confidence 45799999999999988777653 46999998 66999999887654310 0135677766433222 122
Q ss_pred cCCCccEEEEcccccCC-----c---CHHHHHH-HHHHhcCCCeEEEEEEEe----cChhHHHHHHHHHhcCCe
Q 027594 141 VAPPFDYIIGTDVVYAE-----H---LLEPLLQ-TIFALSGPKTTILLGYEI----RSTSVHEQMLQMWKSNFN 201 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~-----~---~~~~l~~-~~~~ll~~~g~~~i~~~~----r~~~~~~~~~~~~~~~f~ 201 (221)
..++||+|+.. +. .+ . .-..+++ .+.+.|+|+|.+++-... ..........+.+++.|.
T Consensus 173 ~~~~yDvIi~D-~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~ 244 (336)
T PLN02823 173 RDEKFDVIIGD-LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFK 244 (336)
T ss_pred CCCCccEEEec-CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCC
Confidence 35689999974 21 11 0 1235676 889999999997653221 122334445555555553
No 203
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.28 E-value=1.2e-05 Score=72.70 Aligned_cols=81 Identities=15% Similarity=0.049 Sum_probs=51.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC----------CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEe
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG----------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW 132 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g----------a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw 132 (221)
.+.+|||.+||+|.+.+.++... ..+++.|+ +.+++.++.|+...+. ..+.+...+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------------~~~~i~~~d~ 98 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------------LEINVINFNS 98 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------------CCceeeeccc
Confidence 45699999999999888776431 34899998 5699999999876541 1122222221
Q ss_pred cCCCC--ccccCCCccEEEEcccccC
Q 027594 133 GNEDH--IKAVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 133 ~~~~~--~~~~~~~fD~Vi~~d~~y~ 156 (221)
..... .....++||+||+|||+-.
T Consensus 99 l~~~~~~~~~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 99 LSYVLLNIESYLDLFDIVITNPPYGR 124 (524)
T ss_pred ccccccccccccCcccEEEeCCCccc
Confidence 11100 0112358999999999653
No 204
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.27 E-value=8.4e-06 Score=68.82 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=76.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHH---------hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEe
Q 027594 63 LKGKRVIELGAGCGVAGFGMAL---------LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW 132 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~---------~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw 132 (221)
.++.+|+|-.||+|.+-+.+.. ...++++.|+ +.++..++.|+..++.. .....+..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----------~~~~~i~~--- 111 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----------NSNINIIQ--- 111 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----------CBGCEEEE---
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----------cccccccc---
Confidence 3567899999999988777765 2456999998 55999999998876642 12223333
Q ss_pred cCCCCccc--cCCCccEEEEcccccCC--c-------------------CHHHHHHHHHHhcCCCeEEEEEEEecC---h
Q 027594 133 GNEDHIKA--VAPPFDYIIGTDVVYAE--H-------------------LLEPLLQTIFALSGPKTTILLGYEIRS---T 186 (221)
Q Consensus 133 ~~~~~~~~--~~~~fD~Vi~~d~~y~~--~-------------------~~~~l~~~~~~ll~~~g~~~i~~~~r~---~ 186 (221)
++...... ...+||+|++++|+-.. . .--.++..+.+.|+++|++.+..+... .
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~ 191 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSS 191 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGS
T ss_pred cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhcc
Confidence 33222111 14689999999986432 0 012367777888999999877766422 1
Q ss_pred hHHHHHHHHHhcCCeEE
Q 027594 187 SVHEQMLQMWKSNFNVK 203 (221)
Q Consensus 187 ~~~~~~~~~~~~~f~v~ 203 (221)
.....+.+.+-+...++
T Consensus 192 ~~~~~iR~~ll~~~~i~ 208 (311)
T PF02384_consen 192 SSEKKIRKYLLENGYIE 208 (311)
T ss_dssp THHHHHHHHHHHHEEEE
T ss_pred chHHHHHHHHHhhchhh
Confidence 12344555544444443
No 205
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.21 E-value=2e-06 Score=68.18 Aligned_cols=126 Identities=15% Similarity=0.116 Sum_probs=77.6
Q ss_pred CCCCeEEEeCCCccHHHHHH-HHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGM-ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~-a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
....++||.|||.|.++--+ .....+|-++|. +..++.|++.+..... ....+.+....+.. .
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~------------~v~~~~~~gLQ~f~---P 118 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP------------RVGEFYCVGLQDFT---P 118 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC------------CEEEEEES-GGG------
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC------------CcceEEecCHhhcc---C
Confidence 34569999999999999755 455667999997 6688888865544221 12333433222221 2
Q ss_pred cCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEEecCh-------------hHHHHHHHHHh-cCCeEE
Q 027594 141 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVK 203 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~-------------~~~~~~~~~~~-~~f~v~ 203 (221)
...+||+|+...|+-+ .+++-.+++.|...|+|+|.+++=.-.-.. ...+.|.+.++ .++++.
T Consensus 119 ~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 119 EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp -TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEE
Confidence 2468999999999877 556888999999999999998873211100 12466667665 588774
No 206
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.21 E-value=1.6e-06 Score=68.84 Aligned_cols=153 Identities=17% Similarity=0.227 Sum_probs=69.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHH-HhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMA-LLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a-~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++...+|||||.|-+-+.+| ..+.+ ++++++ +...+.++.+.+.......... ....++.+...|..+.+..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g---~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYG---KRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT---B---EEEEECS-TTTHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh---cccccceeeccCccccHhH
Confidence 4467899999999998877766 45665 999997 5555555554433221100000 0023455554333221111
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHH---HHHHHHhcCCeEEEecCCCCCcccC
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHE---QMLQMWKSNFNVKLVPKAKESTMWG 215 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~---~~~~~~~~~f~v~~v~~~~~~~~~~ 215 (221)
...-...|+|+++...|.++....| ..+..-|++|.+++ +...-.+...+ .-...+..-+++++........-|.
T Consensus 117 ~~~~s~AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G~~II-s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~vSWt 194 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTCFDPDLNLAL-AELLLELKPGARII-STKPFCPRRRSINSRNLDDIFAILKVEELEYVEGSVSWT 194 (205)
T ss_dssp HHHGHC-SEEEE--TTT-HHHHHHH-HHHHTTS-TT-EEE-ESS-SS-TT----TTSTTSGGGCEEEEEEE--TT-BTTC
T ss_pred hhhhcCCCEEEEeccccCHHHHHHH-HHHHhcCCCCCEEE-ECCCcCCCCcccchhhccChhhEEEEeecccCCCceeec
Confidence 1112357999999999987766666 44445578887764 43322221111 0011122345666666655555555
Q ss_pred CCCC
Q 027594 216 NPLG 219 (221)
Q Consensus 216 ~~~~ 219 (221)
+..|
T Consensus 195 ~~~~ 198 (205)
T PF08123_consen 195 SNSG 198 (205)
T ss_dssp SSB-
T ss_pred CCCc
Confidence 5444
No 207
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.19 E-value=2.3e-06 Score=66.01 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=73.0
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
..+-|||+|+|.+|+.+|...-+|++++. |....++++|+..++. .++.++..|-.+.+ -..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~------------~n~evv~gDA~~y~-----fe~ 96 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD------------VNWEVVVGDARDYD-----FEN 96 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC------------cceEEEeccccccc-----ccc
Confidence 58999999999999999998667999996 7788999999987774 78888885544432 246
Q ss_pred ccEEEEc--ccccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 145 FDYIIGT--DVVYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 145 fD~Vi~~--d~~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
.|+|+|- |...-.+..-+++..+.+.|+.++.++
T Consensus 97 ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 97 ADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred cceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 7888864 444444555677777777888777654
No 208
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.19 E-value=5.1e-05 Score=67.51 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=74.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+|.+|||++||.|.=+..+|.+ + ..|++.|+ +.-++.+++|+++.++ .++.+...|-....
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------------~nv~v~~~D~~~~~-- 177 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------------SNVALTHFDGRVFG-- 177 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCchhhhh--
Confidence 37789999999999888887754 2 36999998 5589999999999875 45655553322111
Q ss_pred cccCCCccEEEEccccc------CCc----------------CHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 139 KAVAPPFDYIIGTDVVY------AEH----------------LLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y------~~~----------------~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
......||.|+...+.- ... .-..++....++|+|||+++.+...-.
T Consensus 178 ~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 178 AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 11245799999643321 111 124577777888999999876655433
No 209
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.19 E-value=6.8e-05 Score=63.52 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=69.1
Q ss_pred cchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCC
Q 027594 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
-+++..|.+.+..............+|++||||||++|-.+-.+.+.|++|+++|...+-+.+ ..
T Consensus 186 SRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L----~~----------- 250 (357)
T PRK11760 186 SRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSL----MD----------- 250 (357)
T ss_pred ChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhh----hC-----------
Confidence 456777777765432111111134689999999999999999999999999999964333222 11
Q ss_pred CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCC--eEEEEEEE
Q 027594 119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK--TTILLGYE 182 (221)
Q Consensus 119 ~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~--g~~~i~~~ 182 (221)
.++|.....+=-.. .+ ...++|++++ |+.-.+... ...+.+-+..| ..+++..+
T Consensus 251 ---~~~V~h~~~d~fr~--~p-~~~~vDwvVc-Dmve~P~rv---a~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 251 ---TGQVEHLRADGFKF--RP-PRKNVDWLVC-DMVEKPARV---AELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred ---CCCEEEEeccCccc--CC-CCCCCCEEEE-ecccCHHHH---HHHHHHHHhcCcccEEEEEEE
Confidence 23555554321111 11 1568999986 666554433 33333433332 34444443
No 210
>PRK00536 speE spermidine synthase; Provisional
Probab=98.17 E-value=3.7e-05 Score=63.22 Aligned_cols=119 Identities=8% Similarity=-0.111 Sum_probs=80.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
..++||=+|.|-|...-.+.+...+|+++|++ ++++.+++-+...... -..+++++.. |-. ....
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~--------~~DpRv~l~~--~~~----~~~~ 137 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEV--------KNNKNFTHAK--QLL----DLDI 137 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHh--------hcCCCEEEee--hhh----hccC
Confidence 45799999999999999999887799999994 5999998844432211 0135666654 211 1123
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE--EecChhHHHHHHHHHhcCCe
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY--EIRSTSVHEQMLQMWKSNFN 201 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~--~~r~~~~~~~~~~~~~~~f~ 201 (221)
++||+||. |..+. +.+.+.+.+.|+|+|.+..=. +.-..+......+.+++.|.
T Consensus 138 ~~fDVIIv-Ds~~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~ 193 (262)
T PRK00536 138 KKYDLIIC-LQEPD----IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS 193 (262)
T ss_pred CcCCEEEE-cCCCC----hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence 68999996 55444 567788999999999976621 22223344555566666776
No 211
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.17 E-value=6.5e-06 Score=68.61 Aligned_cols=117 Identities=22% Similarity=0.249 Sum_probs=74.9
Q ss_pred CCeEEEeCCCcc----HHHHHHHHh------CCEEEEecc-hhhHHHHHHHHHHh----hhcc----ccCCCC-------
Q 027594 65 GKRVIELGAGCG----VAGFGMALL------GCNVITTDQ-IEVLPLLKRNVEWN----TSRI----SQMNPG------- 118 (221)
Q Consensus 65 ~~~vLelGcG~G----~~~l~~a~~------ga~v~~~D~-~~~l~~~~~n~~~n----~~~~----~~~~~~------- 118 (221)
..+|+-.||.|| .+++.+... ..+|++||+ +.+++.|++.+-.. +++. ..+.+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 334444432 136999998 45999998753211 1100 011110
Q ss_pred ----CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 119 ----SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 119 ----~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
......|.+...+..+.. . ....+||+|++.+++.+ .+....+++.+.+.|+|||.+++.+..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~-~-~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQ-W-AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEEChHHHccCEEEcccCCCCC-C-ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 012345677776654421 1 12468999999887644 466889999999999999998886643
No 212
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.16 E-value=6.1e-06 Score=65.10 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=66.6
Q ss_pred CCCeEEEeCCCccH----HHHHHHHh-----C--CEEEEecch-hhHHHHHHHHHHh----hhcc----ccC-C-CC---
Q 027594 64 KGKRVIELGAGCGV----AGFGMALL-----G--CNVITTDQI-EVLPLLKRNVEWN----TSRI----SQM-N-PG--- 118 (221)
Q Consensus 64 ~~~~vLelGcG~G~----~~l~~a~~-----g--a~v~~~D~~-~~l~~~~~n~~~n----~~~~----~~~-~-~~--- 118 (221)
+..+|+-.||+||- +++.+... + .+|++||++ .+++.|++-+-.. +++. ..+ . .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999993 34444441 1 369999984 5988887632110 0000 001 0 00
Q ss_pred ---CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 119 ---SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 119 ---~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.....+|++..++..+ ......+||+|+|-.++-. .+....+++.+.+.|+|||.+++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~---~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD---PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCC---CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 0123468888877665 1223578999999988533 56678899999999999999999654
No 213
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.15 E-value=5e-05 Score=60.50 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=75.7
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
....+++||||.=||.-++..|.. +.+|++.|+ .++.+...+-.+..+. ..+|+++..+-.+.-+
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----------~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----------DHKITFIEGPALESLD 139 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----------cceeeeeecchhhhHH
Confidence 346789999999999888887754 678999998 5588888777777766 5678887743222211
Q ss_pred -c--cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 138 -I--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 138 -~--~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
+ ....+.||+++.. .+..........+.+++++||.+++
T Consensus 140 ~l~~~~~~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFVD---ADKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred HHHhcCCCCceeEEEEc---cchHHHHHHHHHHHhhcccccEEEE
Confidence 1 1235789999986 4444455777888899999999876
No 214
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=98.14 E-value=5.4e-06 Score=71.53 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=65.4
Q ss_pred eEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc-cCC
Q 027594 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAP 143 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~-~~~ 143 (221)
.|||+|+|||++|+.+++.|+. ||+++. ..|.+++++-...|+. .++|++++- ...+... ...
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----------SdkI~vInk---rStev~vg~~~ 134 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----------SDKINVINK---RSTEVKVGGSS 134 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----------ccceeeecc---ccceeeecCcc
Confidence 6999999999999999999985 999996 6799999999999987 567777652 2222211 123
Q ss_pred CccEEEEccccc---CCcCHHHHHHHHHHhcCCCeE
Q 027594 144 PFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTT 176 (221)
Q Consensus 144 ~fD~Vi~~d~~y---~~~~~~~l~~~~~~ll~~~g~ 176 (221)
..|+++..+..- .+..++.+-....++++++..
T Consensus 135 RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~ 170 (636)
T KOG1501|consen 135 RADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCK 170 (636)
T ss_pred hhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCe
Confidence 456665543321 233455555556666776543
No 215
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1.8e-05 Score=64.77 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=59.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||||+|.|.++..+++.+++|++++++ .+++.+++.... .++++++..|....+....
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~--------------~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP--------------YDNLTVINGDALKFDFPSL 93 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc--------------ccceEEEeCchhcCcchhh
Confidence 3457899999999999999999999999999984 588888876552 3567888765544432111
Q ss_pred cCCCccEEEEcccccCC
Q 027594 141 VAPPFDYIIGTDVVYAE 157 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~ 157 (221)
. .++.|++|=|++-.
T Consensus 94 ~--~~~~vVaNlPY~Is 108 (259)
T COG0030 94 A--QPYKVVANLPYNIS 108 (259)
T ss_pred c--CCCEEEEcCCCccc
Confidence 1 68999998776643
No 216
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.11 E-value=6.3e-05 Score=62.11 Aligned_cols=113 Identities=11% Similarity=-0.012 Sum_probs=85.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-G---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
+..+||||-||.|..=+-+... . .+|++.|+ +..++..++-++.+++ .+.+++.+.|-.+....
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----------~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----------EDIARFEQGDAFDRDSL 203 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----------ccceEEEecCCCCHhHh
Confidence 5569999999999776555432 2 35999998 5599999999999987 34558888766555555
Q ss_pred cccCCCccEEEEcccccCCcC---HHHHHHHHHHhcCCCeEEEEEEEecChh
Q 027594 139 KAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRSTS 187 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~---~~~l~~~~~~ll~~~g~~~i~~~~r~~~ 187 (221)
......+++++.|.++-..++ +...++-+..++.|||+++.+.+..++.
T Consensus 204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 555677899999988654443 5667778888899999988877666664
No 217
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.11 E-value=1e-05 Score=71.21 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=78.9
Q ss_pred cccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEe---cchh-hHHHHHHHHHHh
Q 027594 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITT---DQIE-VLPLLKRNVEWN 108 (221)
Q Consensus 33 ~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~---D~~~-~l~~~~~n~~~n 108 (221)
+.|+....++....+.|.+-+... .....=..+||+|||+|.+|..+..++-.+..+ |..+ .++.|.+ -
T Consensus 89 gggt~F~~Ga~~Yid~i~~~~~~~---~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----R 161 (506)
T PF03141_consen 89 GGGTMFPHGADHYIDQIAEMIPLI---KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----R 161 (506)
T ss_pred CCCccccCCHHHHHHHHHHHhhcc---ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----c
Confidence 345555556666666666553110 000111369999999999999999888764333 3222 2333321 1
Q ss_pred hhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC-HHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-LEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~-~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
+++ .-+.+ .....++.+.+.||+|-++.|+-.... -.-++-.+.++|+|||+++++.+.-+
T Consensus 162 Gvp-----------a~~~~-----~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 162 GVP-----------AMIGV-----LGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred Ccc-----------hhhhh-----hccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 221 01111 112345667889999999988765332 24578889999999999999877644
No 218
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.10 E-value=2.5e-05 Score=63.70 Aligned_cols=98 Identities=19% Similarity=0.268 Sum_probs=69.7
Q ss_pred cccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhc
Q 027594 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSR 111 (221)
Q Consensus 33 ~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~ 111 (221)
+.|.++=....++..-+... ...++..|||+|-|||.++..+...|++|++++. +-|+..+++..+---
T Consensus 35 d~GQHilkNp~v~~~I~~ka--------~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp-- 104 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIVEKA--------DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP-- 104 (315)
T ss_pred ccchhhhcCHHHHHHHHhcc--------CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC--
Confidence 45666666655555555433 4557779999999999999999999999999998 558888777654321
Q ss_pred cccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccc
Q 027594 112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV 154 (221)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~ 154 (221)
...+.++...|.-.. ....||++|+|-++
T Consensus 105 ---------~~~kLqV~~gD~lK~-----d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 105 ---------KSGKLQVLHGDFLKT-----DLPRFDGCVSNLPY 133 (315)
T ss_pred ---------ccceeeEEecccccC-----CCcccceeeccCCc
Confidence 135677777555333 24679999986553
No 219
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.08 E-value=4.8e-05 Score=61.63 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=74.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
....|-|+|||-+-++. ..-.+|...|.-. . +-++...|..+ .+..++
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------~----------------~~~V~~cDm~~---vPl~d~ 227 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------V----------------NERVIACDMRN---VPLEDE 227 (325)
T ss_pred CceEEEecccchhhhhh---ccccceeeeeeec----------C----------------CCceeeccccC---CcCccC
Confidence 45689999999886654 3334588888511 0 11334444444 445678
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEE
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKL 204 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~ 204 (221)
+.|+++.+-.+.. .++..++..+.++|++||.+||+...........|...+. -+|.+..
T Consensus 228 svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 228 SVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKH 288 (325)
T ss_pred cccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeee
Confidence 9999998766554 5588999999999999999999886544443556777774 4887754
No 220
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.05 E-value=1.9e-05 Score=58.76 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=46.8
Q ss_pred eEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
++||+|||.|..++.+++.+. +|+++|. +++.+.+++|++.|+. .++.+....+++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------------~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------------PNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------------CcEEEEEeeeeCC
Confidence 489999999999999998876 5999996 7799999999999875 3466666665544
No 221
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.02 E-value=1.5e-05 Score=65.73 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=76.9
Q ss_pred CCCeEEEeCCCcc----HHHHHHHHhC-------CEEEEecchh-hHHHHHHHHHH-----hhhcc----ccCCCC----
Q 027594 64 KGKRVIELGAGCG----VAGFGMALLG-------CNVITTDQIE-VLPLLKRNVEW-----NTSRI----SQMNPG---- 118 (221)
Q Consensus 64 ~~~~vLelGcG~G----~~~l~~a~~g-------a~v~~~D~~~-~l~~~~~n~~~-----n~~~~----~~~~~~---- 118 (221)
+..+|.-.||+|| .+++.+.... .+|++||++. +++.|+.-+-. -+++. ..+...
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4579999999999 3444444432 3699999954 99988753322 11111 011111
Q ss_pred ----CCCCCceEEEEEEecCCCCccccCCCccEEEEcccc-cC-CcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 119 ----SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV-YA-EHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 119 ----~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~-y~-~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
......|.+..++...... ..+.||+|+|-+++ |. .+.-..++..+...|+|||.+++.+...-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETI 245 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCccc
Confidence 1123456666655443322 35789999998874 43 66778899999999999999999776544
No 222
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=0.00021 Score=61.59 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=76.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh----CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL----GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~----ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+|.+|||+.++.|-=+..+|.+ |..|++.|.+ .=++.++.|+.+.+. .++.+...|-....
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------------~nv~~~~~d~~~~~ 221 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------------RNVIVVNKDARRLA 221 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CceEEEeccccccc
Confidence 347889999999998766655543 3457999984 589999999999886 44555554433222
Q ss_pred CccccCCCccEEEEccccc------C-C---------------cCHHHHHHHHHHhcCCCeEEEEEEEecChh
Q 027594 137 HIKAVAPPFDYIIGTDVVY------A-E---------------HLLEPLLQTIFALSGPKTTILLGYEIRSTS 187 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y------~-~---------------~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~ 187 (221)
.......+||.|+...+-- . + .....++....++++|||.++.+.....+.
T Consensus 222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 2222233699998854421 1 1 124457777888899999988877655543
No 223
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=0.00012 Score=58.76 Aligned_cols=117 Identities=19% Similarity=0.119 Sum_probs=78.6
Q ss_pred ceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecch--hhHHHHHHHHHHhhhcc
Q 027594 36 TTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI--EVLPLLKRNVEWNTSRI 112 (221)
Q Consensus 36 ~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~~--~~l~~~~~n~~~n~~~~ 112 (221)
..+-+++..|...+... .-+.+|+.|||+|+-||-++-.+.+.||+ |+++|.. ..-.-+|.
T Consensus 58 ~yVSRG~~KL~~ale~F-------~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~--------- 121 (245)
T COG1189 58 PYVSRGGLKLEKALEEF-------ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN--------- 121 (245)
T ss_pred CccccHHHHHHHHHHhc-------CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---------
Confidence 34556789999999876 56789999999999999999999999985 9999963 33333332
Q ss_pred ccCCCCCCCCCceEEEE-EEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 113 SQMNPGSDLLGSIQAVE-LDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 113 ~~~~~~~~~~~~v~~~~-~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.++|.+.. .+....... ...+..|++++. + ..-++..++..+..+++|++.++.-.
T Consensus 122 ---------d~rV~~~E~tN~r~l~~~-~~~~~~d~~v~D-v--SFISL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 122 ---------DPRVIVLERTNVRYLTPE-DFTEKPDLIVID-V--SFISLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred ---------CCcEEEEecCChhhCCHH-HcccCCCeEEEE-e--ehhhHHHHHHHHHHhcCCCceEEEEe
Confidence 13343322 121111111 123467888864 3 22457788888899999988766543
No 224
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.95 E-value=5.1e-05 Score=68.32 Aligned_cols=107 Identities=12% Similarity=0.051 Sum_probs=73.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+..+||||||.|-..+.+|....+ ++++|. ...+..+.+.+...++ .|+.+...+...... ..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------------~N~~~~~~~~~~~~~-~~ 413 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------------TNFLLFPNNLDLILN-DL 413 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------------CeEEEEcCCHHHHHH-hc
Confidence 4678999999999999999988664 899997 4455555555555443 466666544321111 12
Q ss_pred cCCCccEEEEc--ccccCCc------CHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VAPPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~~~fD~Vi~~--d~~y~~~------~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.++++|-|..+ ||..-.. ..+.++..+.++|+|||.++++.-.
T Consensus 414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 35678888665 4543222 2567999999999999999986543
No 225
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.89 E-value=0.0003 Score=55.94 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=70.8
Q ss_pred EEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 68 VIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 68 vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
|.|+||--|.+++.|.+.|. +++++|+ +..++.++.|++.+++ .+++.+.. ++....-.+.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----------~~~i~~rl---gdGL~~l~~~e~ 66 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----------EDRIEVRL---GDGLEVLKPGED 66 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------------TTTEEEEE----SGGGG--GGG-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------cccEEEEE---CCcccccCCCCC
Confidence 68999999999999999986 5999998 5599999999999887 56787776 332221112234
Q ss_pred ccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeE
Q 027594 145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 202 (221)
Q Consensus 145 fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v 202 (221)
.|.|+.+.+=- ..+..++......++....+ +..+.......++|+. +.+|.+
T Consensus 67 ~d~ivIAGMGG--~lI~~ILe~~~~~~~~~~~l-ILqP~~~~~~LR~~L~--~~gf~I 119 (205)
T PF04816_consen 67 VDTIVIAGMGG--ELIIEILEAGPEKLSSAKRL-ILQPNTHAYELRRWLY--ENGFEI 119 (205)
T ss_dssp --EEEEEEE-H--HHHHHHHHHTGGGGTT--EE-EEEESS-HHHHHHHHH--HTTEEE
T ss_pred CCEEEEecCCH--HHHHHHHHhhHHHhccCCeE-EEeCCCChHHHHHHHH--HCCCEE
Confidence 68887665422 23444444444445444444 4467666655666554 356766
No 226
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.87 E-value=0.0007 Score=53.98 Aligned_cols=156 Identities=15% Similarity=0.160 Sum_probs=87.8
Q ss_pred ccceecchHH-HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hC--CEEEEecc-hhhHHHHHHHHHHh
Q 027594 34 LGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LG--CNVITTDQ-IEVLPLLKRNVEWN 108 (221)
Q Consensus 34 ~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~-~g--a~v~~~D~-~~~l~~~~~n~~~n 108 (221)
...++|+--. .||..+...... ....+|.+||-||+.+|..--.++- .| ..|++++. +...+.+-. ++..
T Consensus 46 ~eYR~W~P~RSKLaAai~~Gl~~----~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~-la~~ 120 (229)
T PF01269_consen 46 VEYRVWNPFRSKLAAAILKGLEN----IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLN-LAKK 120 (229)
T ss_dssp EEEEEE-TTT-HHHHHHHTT-S------S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH-HHHH
T ss_pred cceeecCchhhHHHHHHHcCccc----cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHH-Hhcc
Confidence 3677887632 455555433211 2456789999999999976666654 34 35999997 444333332 2221
Q ss_pred hhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh-
Q 027594 109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS- 187 (221)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~- 187 (221)
..||-.+-.|-..+..-...-+..|+|++ |+. .++..+-++......||+||.++++.+.|+-+
T Consensus 121 -------------R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~ 185 (229)
T PF01269_consen 121 -------------RPNIIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGGHLIISIKARSIDS 185 (229)
T ss_dssp -------------STTEEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-S
T ss_pred -------------CCceeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccC
Confidence 13455554333333222222457888885 554 45667788888889999999999998875532
Q ss_pred ------HHHHHHHHHhc-CCeE-EEecCCC
Q 027594 188 ------VHEQMLQMWKS-NFNV-KLVPKAK 209 (221)
Q Consensus 188 ------~~~~~~~~~~~-~f~v-~~v~~~~ 209 (221)
++..-.+.+++ +|++ +.+.-+.
T Consensus 186 t~~p~~vf~~e~~~L~~~~~~~~e~i~LeP 215 (229)
T PF01269_consen 186 TADPEEVFAEEVKKLKEEGFKPLEQITLEP 215 (229)
T ss_dssp SSSHHHHHHHHHHHHHCTTCEEEEEEE-TT
T ss_pred cCCHHHHHHHHHHHHHHcCCChheEeccCC
Confidence 23444445554 7888 4444333
No 227
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.86 E-value=0.00026 Score=58.45 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=81.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhh------cc----------------------
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTS------RI---------------------- 112 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~------~~---------------------- 112 (221)
...+.+||=-|||.|.++..+|++|..|.+.|.+. |+= ..|.-.|.. .+
T Consensus 54 ~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll--~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 54 DRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLL--ASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHH--HHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 44567999999999999999999999999999865 532 223333321 11
Q ss_pred ccCCCCC--CCCCceEEEEEEecCCCCccccCCCccEEEEcccccC---CcCHHHHHHHHHHhcCCCeEEEEEEEe----
Q 027594 113 SQMNPGS--DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILLGYEI---- 183 (221)
Q Consensus 113 ~~~~~~~--~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~---~~~~~~l~~~~~~ll~~~g~~~i~~~~---- 183 (221)
.+..|.+ ....++.....|+..........++||.|+.+ |. ...+-..+++|.++|||||..+=..+.
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~ 208 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHF 208 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEEecCCccccC
Confidence 0111111 12334444443333322221124799999987 43 344667888899999999954422221
Q ss_pred cCh---------hHHHHHHHHHh-cCCeEEE
Q 027594 184 RST---------SVHEQMLQMWK-SNFNVKL 204 (221)
Q Consensus 184 r~~---------~~~~~~~~~~~-~~f~v~~ 204 (221)
... -..+.+....+ .+|++..
T Consensus 209 ~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 209 EPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 111 01455555554 4888753
No 228
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.0003 Score=55.50 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=81.3
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecchhhHHHHHHHHHHhhhccccCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQIEVLPLLKRNVEWNTSRISQMNP 117 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-ga--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~ 117 (221)
++..|.+...++ .-..++.+|+||||-.|-.+-++++. ++ +|+++|+.++-.
T Consensus 29 Aa~KL~el~~k~-------~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~------------------ 83 (205)
T COG0293 29 AAYKLLELNEKF-------KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP------------------ 83 (205)
T ss_pred HHHHHHHHHHhc-------CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc------------------
Confidence 455555544444 22346789999999999999999876 43 399999633110
Q ss_pred CCCCCCceEEEEEEecCCCCcc-----ccCCCccEEEEcccccCC------------cCHHHHHHHHHHhcCCCeEEEEE
Q 027594 118 GSDLLGSIQAVELDWGNEDHIK-----AVAPPFDYIIGTDVVYAE------------HLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~~~-----~~~~~fD~Vi~~d~~y~~------------~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
...|.+.+.|..+..... ....++|+|++ |+.-+. ......+......|+|+|.+++-
T Consensus 84 ----~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K 158 (205)
T COG0293 84 ----IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK 158 (205)
T ss_pred ----CCCceEEeeeccCccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence 234788888877665432 22345799985 443321 12233444555678999998764
Q ss_pred EEecChhHHHHHHHHHhcCCeEE
Q 027594 181 YEIRSTSVHEQMLQMWKSNFNVK 203 (221)
Q Consensus 181 ~~~r~~~~~~~~~~~~~~~f~v~ 203 (221)
.-... ..+.++..+++.|+.-
T Consensus 159 ~fqg~--~~~~~l~~~~~~F~~v 179 (205)
T COG0293 159 VFQGE--DFEDLLKALRRLFRKV 179 (205)
T ss_pred EEeCC--CHHHHHHHHHHhhcee
Confidence 43322 2467778888777553
No 229
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.84 E-value=2.3e-05 Score=64.16 Aligned_cols=147 Identities=16% Similarity=0.251 Sum_probs=81.4
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhh-cc-------ccCCCCCC--------C
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTS-RI-------SQMNPGSD--------L 121 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~-~~-------~~~~~~~~--------~ 121 (221)
+...+|.++||+|||+-+..+..|..- .+|+++|+ +...+.+++=++.-+. .+ +....... .
T Consensus 52 ~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 52 SGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp TSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred ccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 567788999999999977655555444 46999998 5466655543332111 11 00011000 0
Q ss_pred CCceE-EEEEEecCCCCccc---cCCCccEEEEccccc----CCcCHHHHHHHHHHhcCCCeEEEEEEEecCh-------
Q 027594 122 LGSIQ-AVELDWGNEDHIKA---VAPPFDYIIGTDVVY----AEHLLEPLLQTIFALSGPKTTILLGYEIRST------- 186 (221)
Q Consensus 122 ~~~v~-~~~~dw~~~~~~~~---~~~~fD~Vi~~d~~y----~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------- 186 (221)
...|+ +...|......+.. .+++||+|+++-|+- ..+.....++.+.++|||||.++++......
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~ 211 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGH 211 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCE
Confidence 11233 44555544443322 133599999987664 3456777888888999999999987643321
Q ss_pred -----hHHHHHH-HHHh-cCCeEEEec
Q 027594 187 -----SVHEQML-QMWK-SNFNVKLVP 206 (221)
Q Consensus 187 -----~~~~~~~-~~~~-~~f~v~~v~ 206 (221)
.+.+.+. +.++ .+|.+....
T Consensus 212 ~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 212 KFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp EEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ecccccCCHHHHHHHHHHcCCEEEecc
Confidence 1223443 4444 589988776
No 230
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.83 E-value=1.5e-05 Score=61.89 Aligned_cols=49 Identities=29% Similarity=0.195 Sum_probs=36.5
Q ss_pred chHHHHHHHHhhcccCCCCCC-CCC-CCCeEEEeCCCccHHHHHHHHhC---CEEEEecch
Q 027594 40 DASVVFVKYLEKNCRKGRFCP-SKL-KGKRVIELGAGCGVAGFGMALLG---CNVITTDQI 95 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~-~~~-~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~~ 95 (221)
+++..|.+.+.+. . ... ++.+||||||++|-.+-++.+.+ .+|+++|..
T Consensus 4 Ra~~KL~ei~~~~-------~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~ 57 (181)
T PF01728_consen 4 RAAFKLYEIDEKF-------KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLG 57 (181)
T ss_dssp THHHHHHHHHHTT-------SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESS
T ss_pred HHHHHHHHHHHHC-------CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecc
Confidence 4667777777655 2 112 45899999999999999999887 579999974
No 231
>PRK10742 putative methyltransferase; Provisional
Probab=97.81 E-value=0.00012 Score=59.42 Aligned_cols=85 Identities=18% Similarity=0.209 Sum_probs=55.6
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCc
Q 027594 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~f 145 (221)
+|||+-+|+|..|+.++.+|++|+++|. +.+...++.|++..... ..... ....++++...|-.... ......|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~-~~~~~--~~~~ri~l~~~da~~~L--~~~~~~f 165 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYAD-AEIGG--WLQERLQLIHASSLTAL--TDITPRP 165 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhc-cccch--hhhceEEEEeCcHHHHH--hhCCCCC
Confidence 8999999999999999999999999997 56888889998874210 00000 00134555553322221 1123479
Q ss_pred cEEEEcccccC
Q 027594 146 DYIIGTDVVYA 156 (221)
Q Consensus 146 D~Vi~~d~~y~ 156 (221)
|+|+..+++-+
T Consensus 166 DVVYlDPMfp~ 176 (250)
T PRK10742 166 QVVYLDPMFPH 176 (250)
T ss_pred cEEEECCCCCC
Confidence 99997554433
No 232
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.79 E-value=0.0002 Score=58.55 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=81.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+.++||=||-|.|...-.+.+.. .+|+++|+ +.+++.+++-+....... ..+++++...|-... +..
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~--------~d~r~~i~~~Dg~~~--l~~ 145 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGL--------DDPRVRIIIGDGRKF--LKE 145 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTG--------GSTTEEEEESTHHHH--HHT
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcccc--------CCCceEEEEhhhHHH--HHh
Confidence 56899999999999988888765 57999998 568999988666543210 135777766322111 112
Q ss_pred cCC-CccEEEEc--ccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEecC--hhHHHHHHHHHhcCCe
Q 027594 141 VAP-PFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKSNFN 201 (221)
Q Consensus 141 ~~~-~fD~Vi~~--d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r~--~~~~~~~~~~~~~~f~ 201 (221)
..+ +||+|+.. |+..... .-..+++.+.++|+|+|.+++-..... ........+.++..|.
T Consensus 146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 146 TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence 234 89999973 2111111 246889999999999999877543322 2334445556666654
No 233
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.79 E-value=7.3e-05 Score=61.74 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=71.0
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
..-+++.+.+.+ ...++..|||+|+|+|.++..++..+.+|+++|. ++..+.+++....
T Consensus 15 ~~~~~~~Iv~~~-------~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~------------- 74 (262)
T PF00398_consen 15 DPNIADKIVDAL-------DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS------------- 74 (262)
T ss_dssp HHHHHHHHHHHH-------TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT-------------
T ss_pred CHHHHHHHHHhc-------CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh-------------
Confidence 344555555553 2337889999999999999999999999999998 5588888775542
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCC
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGP 173 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~ 173 (221)
.++++++..|................|++|-+++. -.+++..+...-+.
T Consensus 75 -~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 75 -NPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNI---SSPILRKLLELYRF 123 (262)
T ss_dssp -CSSEEEEES-TTTSCGGGHCSSSEEEEEEEETGTG---HHHHHHHHHHHGGG
T ss_pred -cccceeeecchhccccHHhhcCCceEEEEEecccc---hHHHHHHHhhcccc
Confidence 35788888665544322212345678888866432 23455555443333
No 234
>PHA01634 hypothetical protein
Probab=97.77 E-value=0.0001 Score=53.38 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=45.4
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhh
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS 110 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~ 110 (221)
..++++++|+|+|++.|--+|.++..||+ |++.+. +...+..+.|++.|.+
T Consensus 24 ~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 24 MLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred heeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 35679999999999999999999999996 999997 5588999999998865
No 235
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.72 E-value=0.0011 Score=48.25 Aligned_cols=103 Identities=24% Similarity=0.306 Sum_probs=64.0
Q ss_pred EEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC-
Q 027594 68 VIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA- 142 (221)
Q Consensus 68 vLelGcG~G~~~l~~a~~g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~- 142 (221)
++|+|||+|... .++... ..++++|. +.++...+..... .. ...+.+...++... ..+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~-~~~~~~~ 117 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG-----------LGLVDFVVADALGG-VLPFEDS 117 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC-----------CCceEEEEeccccC-CCCCCCC
Confidence 999999999877 444443 37888997 4466664433322 11 01145555444331 122223
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
..||++......+... ...++..+.+.++|+|.+++......
T Consensus 118 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 118 ASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred CceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4799994444444444 88899999999999999888766543
No 236
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=97.70 E-value=3e-05 Score=63.62 Aligned_cols=134 Identities=22% Similarity=0.173 Sum_probs=81.3
Q ss_pred EEEEeeCCC----CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hh
Q 027594 22 QLQFSQDPN----SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IE 96 (221)
Q Consensus 22 ~~~i~~~~~----~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~ 96 (221)
...+.|... ...+|..+|++++.|++++.++ +....++++.++|||.++....+++..--|...|. ..
T Consensus 51 ~~v~~~~~~~~~~~~~tg~~~w~~al~L~~~l~~~-------~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~ 123 (262)
T KOG2497|consen 51 TKVILQSHSLRFLLARTGLSVWESALSLEADLRDK-------PDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRC 123 (262)
T ss_pred CeeeecchHHHHHHHHhccccchHHHHHHHHHhhC-------cccccccchHhhccCHHHHHHHHHhcccceecCCccCc
Confidence 344555543 3568999999999999999988 45578899999999999998666665544444443 22
Q ss_pred hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc-cCCCccEEEEcccccCCcCHHHHHHHHHHhc
Q 027594 97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALS 171 (221)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~-~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll 171 (221)
+.-+...+...+..... ...-+.-..+|......+. ....+|+|+++|++|. ....+++.....+|
T Consensus 124 ~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL 190 (262)
T KOG2497|consen 124 AGLLLEEIILLSRDLSL--------EVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL 190 (262)
T ss_pred HHHHHHHHHhccccccc--------cccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence 33333333332221100 0111111222222111110 1234899999999999 77888888887764
No 237
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.65 E-value=0.00034 Score=55.33 Aligned_cols=104 Identities=18% Similarity=0.119 Sum_probs=76.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+|.+||++|=|.|++.-.+..... +-+.++. +++++.++.+.-.. ..+|.+....|.+.... .
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------------k~nViil~g~WeDvl~~-L 165 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------------KENVIILEGRWEDVLNT-L 165 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------------ccceEEEecchHhhhcc-c
Confidence 3688999999999998888876654 3556664 78998888764332 36788999999877543 3
Q ss_pred cCCCccEEEEcccc-cCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 141 VAPPFDYIIGTDVV-YAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~-y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
+++.||-|+- |.+ -..+++..+-+.+.++|||+|++-.+.
T Consensus 166 ~d~~FDGI~y-DTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 166 PDKHFDGIYY-DTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred cccCcceeEe-echhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 4677999874 443 234667788889999999999865543
No 238
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.64 E-value=0.00076 Score=55.87 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=62.5
Q ss_pred CCeEEEeCCCc-cHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHH-HhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 65 GKRVIELGAGC-GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 65 ~~~vLelGcG~-G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++|+=||||. -+.++.+++. ++.|+.+|+ +++++.+++-+. ..++ ..++++...|-.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----------~~~m~f~~~d~~~~--- 186 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----------SKRMSFITADVLDV--- 186 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------------SSEEEEES-GGGG---
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----------cCCeEEEecchhcc---
Confidence 35999999997 8888988854 457999998 669999988777 4454 46788887554332
Q ss_pred cccCCCccEEEEcccccC-CcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~-~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
......||+|+.+-.+.. ...-..++..+.+.++||..+++=
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 222468999988877763 567889999999999999988773
No 239
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.60 E-value=4.1e-05 Score=60.59 Aligned_cols=85 Identities=18% Similarity=0.122 Sum_probs=68.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-cccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~~ 141 (221)
.-..|+|--||.|--.+..|..|+.|+++|+ +.-+..++.|++--|+ .++|++++.||-+... ++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI-----------~~rItFI~GD~ld~~~~lq~~ 162 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV-----------PDRITFICGDFLDLASKLKAD 162 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC-----------CceeEEEechHHHHHHHHhhh
Confidence 3458999999999999999999999999998 5689999999999887 5699999999977643 2233
Q ss_pred CCCccEEEEcccccCCcC
Q 027594 142 APPFDYIIGTDVVYAEHL 159 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~ 159 (221)
...+|.|+.+++.-.++.
T Consensus 163 K~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 163 KIKYDCVFLSPPWGGPSY 180 (263)
T ss_pred hheeeeeecCCCCCCcch
Confidence 345789998887654443
No 240
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.59 E-value=0.00016 Score=60.50 Aligned_cols=45 Identities=11% Similarity=0.002 Sum_probs=38.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHH
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~-~~~l~~~~~n~~~ 107 (221)
.++..+||.+||.|-.+..+++.. .+|+++|. +++++.+++++..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 356799999999999999998763 57999997 6799999887654
No 241
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.46 E-value=2.8e-05 Score=61.06 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=70.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
+.+++||||+|-|-++..++..-.+|++|+.+. |...+++. +. +| ....+|... +
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk----~y-------------nV-l~~~ew~~t------~ 167 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK----NY-------------NV-LTEIEWLQT------D 167 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc----CC-------------ce-eeehhhhhc------C
Confidence 457999999999999999888777899999765 66655531 11 11 123456443 3
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCC-CeEEEEEE
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGP-KTTILLGY 181 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~-~g~~~i~~ 181 (221)
-+||+|.+-.++=...+.-.|++.+..+++| +|+++++.
T Consensus 168 ~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred ceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 4799999888877777778899999999998 88888764
No 242
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.41 E-value=0.003 Score=50.16 Aligned_cols=133 Identities=18% Similarity=0.160 Sum_probs=81.5
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecchhhHHHHHHHHHHhhhccccCCCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQIEVLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
+++.++.+||....... .......++||+||=+.-..+. ..+ -+|+.+|...
T Consensus 30 dSSK~lv~wL~~~~~~~---~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns---------------------- 82 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRP---KNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNS---------------------- 82 (219)
T ss_pred chhHHHHHHhhhhcccc---ccccccceEEeecccCCCCccc--ccCceeeEEeecCC----------------------
Confidence 37999999998763211 0111236999999864322221 222 2599999621
Q ss_pred CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc---CHHHHHHHHHHhcCCCeE-----EEEEEEe------c
Q 027594 119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTT-----ILLGYEI------R 184 (221)
Q Consensus 119 ~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~---~~~~l~~~~~~ll~~~g~-----~~i~~~~------r 184 (221)
....+.+.|+-+........++||+|.+|=++-..+ ..-..+..+.++|+|+|. ++++.+. |
T Consensus 83 ----~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSR 158 (219)
T PF11968_consen 83 ----QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSR 158 (219)
T ss_pred ----CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccc
Confidence 112344555555433233467999999998876644 345678888889999999 8887764 2
Q ss_pred ChhHHHHHHHHHhc-CCeEEE
Q 027594 185 STSVHEQMLQMWKS-NFNVKL 204 (221)
Q Consensus 185 ~~~~~~~~~~~~~~-~f~v~~ 204 (221)
+. ..+.|.+.+.. +|....
T Consensus 159 y~-~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 159 YM-TEERLREIMESLGFTRVK 178 (219)
T ss_pred cc-CHHHHHHHHHhCCcEEEE
Confidence 22 23556666543 776643
No 243
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.0013 Score=54.77 Aligned_cols=105 Identities=13% Similarity=0.043 Sum_probs=70.3
Q ss_pred CeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++||-||-|.|...-.+.+.. .+++++|+ +.+++.+++=+..-... ...+++.+...|=... +....
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~--------~~dpRv~i~i~Dg~~~--v~~~~ 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG--------ADDPRVEIIIDDGVEF--LRDCE 147 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc--------cCCCceEEEeccHHHH--HHhCC
Confidence 699999999999999999886 47999998 56899988755543210 0025666655332211 12223
Q ss_pred CCccEEEEccccc-CCc---CHHHHHHHHHHhcCCCeEEEEE
Q 027594 143 PPFDYIIGTDVVY-AEH---LLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 143 ~~fD~Vi~~d~~y-~~~---~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.+||+||..-.=. .+. .-..+.+.++++|+++|.+..-
T Consensus 148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 4899999742111 110 1367999999999999997653
No 244
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.011 Score=48.60 Aligned_cols=104 Identities=12% Similarity=-0.000 Sum_probs=67.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+|||-|+|+|-+|.++++.- .+++-.|+.+ -.+.+++-.+..+. .+++++..-|....-
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----------~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----------GDNVTVTHRDVCGSG 170 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----------CcceEEEEeecccCC
Confidence 34589999999999999999999864 3588888743 45555566666665 578898887775543
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
... ....+|.|+..-+ --+. .+..+..+|+.+|.-+++.
T Consensus 171 F~~-ks~~aDaVFLDlP-aPw~----AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 171 FLI-KSLKADAVFLDLP-APWE----AIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred ccc-cccccceEEEcCC-Chhh----hhhhhHHHhhhcCceEEec
Confidence 321 1457888886422 2222 2333344677666544444
No 245
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.36 E-value=0.00074 Score=50.38 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=37.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHH------hCCEEEEecc-hhhHHHHHHHHHHhh
Q 027594 63 LKGKRVIELGAGCGVAGFGMAL------LGCNVITTDQ-IEVLPLLKRNVEWNT 109 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~------~ga~v~~~D~-~~~l~~~~~n~~~n~ 109 (221)
.+..+|+|+|||-|.+|..++. .+.+|+++|. +..++.+.+..+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4567999999999999999998 3568999997 557777777666544
No 246
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.36 E-value=0.0019 Score=53.75 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=58.7
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+..++|||+|||+|....++... + .+++++|. +.|++.++.-++. .. ... ...|....
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~-~~-------------~~~--~~~~~~~~ 93 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA-GP-------------NNR--NAEWRRVL 93 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc-cc-------------ccc--cchhhhhh
Confidence 3567789999999999766555432 2 35999997 4588877764432 21 000 00111110
Q ss_pred C-ccccCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 137 H-IKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 137 ~-~~~~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
. ......+.|+|+++.++-.... ...+++.+...+++ .++++.+.
T Consensus 94 ~~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 94 YRDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hcccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 0 0011223499999988876444 34455555444544 55555443
No 247
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.023 Score=44.80 Aligned_cols=149 Identities=16% Similarity=0.182 Sum_probs=86.0
Q ss_pred ceecchHH-HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hC-CEEEEecc-hhhH-HHHHHHHHHhhh
Q 027594 36 TTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LG-CNVITTDQ-IEVL-PLLKRNVEWNTS 110 (221)
Q Consensus 36 ~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~-~g-a~v~~~D~-~~~l-~~~~~n~~~n~~ 110 (221)
.+.|+.-. .||..+..-+. .....+|.+||=||+-+|...--.+. .| ..+++++. +.+. +++.-.-+++
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~----~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~-- 124 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLK----NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP-- 124 (231)
T ss_pred eeeeCcchhHHHHHHHcCcc----cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC--
Confidence 57887622 34444443321 12456889999999999976555554 34 35999997 4433 3332222222
Q ss_pred ccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh---
Q 027594 111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS--- 187 (221)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~--- 187 (221)
|+..+..|-..+..-...-++.|+|+. |+ -.++..+-+.......|+++|.++++.+.|+-+
T Consensus 125 -------------Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-DV-AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~ 189 (231)
T COG1889 125 -------------NIIPILEDARKPEKYRHLVEKVDVIYQ-DV-AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTA 189 (231)
T ss_pred -------------CceeeecccCCcHHhhhhcccccEEEE-ec-CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccC
Confidence 334444333322211122345677664 33 234567778888899999999999999988732
Q ss_pred ----HHHHHHHHHh-cCCeEEEe
Q 027594 188 ----VHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 188 ----~~~~~~~~~~-~~f~v~~v 205 (221)
+++.-.+.++ .+|++.++
T Consensus 190 dp~~vf~~ev~kL~~~~f~i~e~ 212 (231)
T COG1889 190 DPEEVFKDEVEKLEEGGFEILEV 212 (231)
T ss_pred CHHHHHHHHHHHHHhcCceeeEE
Confidence 3443334443 47877443
No 248
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.28 E-value=0.0021 Score=54.46 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=67.2
Q ss_pred CCCeEEEeCCCccHH-HHHHHHh-----CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEE--EEEEecC
Q 027594 64 KGKRVIELGAGCGVA-GFGMALL-----GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA--VELDWGN 134 (221)
Q Consensus 64 ~~~~vLelGcG~G~~-~l~~a~~-----ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~--~~~dw~~ 134 (221)
++..++|||||.|.= .+.+..+ ..+++.+|++ ++++.+..++..... +.+.+ +..|..+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~------------p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF------------SHVRCAGLLGTYDD 143 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC------------CCeEEEEEEecHHH
Confidence 456899999999963 3333222 3568999995 589888888873221 33444 4444433
Q ss_pred CCC-ccc--cCCCccEEEE-cccccC--CcCHHHHHHHHHH-hcCCCeEEEEEEE
Q 027594 135 EDH-IKA--VAPPFDYIIG-TDVVYA--EHLLEPLLQTIFA-LSGPKTTILLGYE 182 (221)
Q Consensus 135 ~~~-~~~--~~~~fD~Vi~-~d~~y~--~~~~~~l~~~~~~-ll~~~g~~~i~~~ 182 (221)
... ++. ......+++. ...+.+ +.....+++.+++ .|+|++.+++..-
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 221 111 1223455543 345555 5567789999999 9999999998654
No 249
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.15 E-value=0.0021 Score=53.70 Aligned_cols=146 Identities=21% Similarity=0.239 Sum_probs=91.5
Q ss_pred eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhcc
Q 027594 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (221)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (221)
.+++.+-.++..+.. ..++.+|||+.|+.|-=+..+|.+ + ..|++.|. ..-+..++.|+.+.+.
T Consensus 68 ~vQd~sS~l~~~~L~----------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-- 135 (283)
T PF01189_consen 68 YVQDESSQLVALALD----------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-- 135 (283)
T ss_dssp EEHHHHHHHHHHHHT----------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---
T ss_pred Eeccccccccccccc----------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--
Confidence 466666666665553 237788999999999877777754 3 47999998 5688999999998775
Q ss_pred ccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEccccc------CC---------c-------CHHHHHHHHHHh
Q 027594 113 SQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY------AE---------H-------LLEPLLQTIFAL 170 (221)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y------~~---------~-------~~~~l~~~~~~l 170 (221)
.++.+...|-..... ......||.|+...+-- .. . .-..+++...++
T Consensus 136 ----------~~v~~~~~D~~~~~~-~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 204 (283)
T PF01189_consen 136 ----------FNVIVINADARKLDP-KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKL 204 (283)
T ss_dssp ----------SSEEEEESHHHHHHH-HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHC
T ss_pred ----------ceEEEEeeccccccc-cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHh
Confidence 456655522222111 11234699998854321 11 1 134477778888
Q ss_pred c----CCCeEEEEEEEe----cChhHHHHHHHHHhcCCeEEEec
Q 027594 171 S----GPKTTILLGYEI----RSTSVHEQMLQMWKSNFNVKLVP 206 (221)
Q Consensus 171 l----~~~g~~~i~~~~----r~~~~~~~~~~~~~~~f~v~~v~ 206 (221)
+ +|||+++.+... -+..+.+.|++.. ..|++..+.
T Consensus 205 ~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~-~~~~l~~~~ 247 (283)
T PF01189_consen 205 LNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH-PDFELVPIP 247 (283)
T ss_dssp EHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS-TSEEEECCE
T ss_pred hcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC-CCcEEEecc
Confidence 9 999998776643 2233455555532 245555444
No 250
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.14 E-value=0.018 Score=45.83 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=74.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+.++.|+||=-|.+++++.+.+. .+++.|. +-.++.+.+|+..+++ .+++++..+ +....-.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----------~~~i~vr~~---dgl~~l~ 81 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----------SERIDVRLG---DGLAVLE 81 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----------cceEEEecc---CCccccC
Confidence 345699999999999999987754 5899998 4599999999999987 466777663 3322222
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHH
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM 195 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~ 195 (221)
.+..+|+|+-+.+ .-..+..++..-..-++.--++++ .+..+....+.|+..
T Consensus 82 ~~d~~d~ivIAGM--GG~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~LR~~L~~ 133 (226)
T COG2384 82 LEDEIDVIVIAGM--GGTLIREILEEGKEKLKGVERLIL-QPNIHTYELREWLSA 133 (226)
T ss_pred ccCCcCEEEEeCC--cHHHHHHHHHHhhhhhcCcceEEE-CCCCCHHHHHHHHHh
Confidence 3457898876643 122344444444444543334433 565555555666543
No 251
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.05 E-value=0.0064 Score=50.03 Aligned_cols=130 Identities=17% Similarity=0.161 Sum_probs=87.0
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.++..|+.|+=+| ---+.|++++..|. +|..+|+++ .+....+-+++-+. +++.....|..++.
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~------------~~ie~~~~Dlr~pl 214 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY------------NNIEAFVFDLRNPL 214 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc------------cchhheeehhcccC
Confidence 4788999999999 56788888887654 699999976 88999988888775 56777777776654
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCC-C--eEEEEEEEecChhHHHHHHHHH-h-cCCeEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGP-K--TTILLGYEIRSTSVHEQMLQMW-K-SNFNVKL 204 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~-~--g~~~i~~~~r~~~~~~~~~~~~-~-~~f~v~~ 204 (221)
... ..++||+.+. ||.+-...+..++..=-..|+. | |++.+.....+-.-+..+...+ . -+|.++.
T Consensus 215 pe~-~~~kFDvfiT-DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITd 285 (354)
T COG1568 215 PED-LKRKFDVFIT-DPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITD 285 (354)
T ss_pred hHH-HHhhCCeeec-CchhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHh
Confidence 322 3578999886 5556666677777665556664 3 5666655443333344444433 2 2555543
No 252
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.04 E-value=0.0028 Score=54.66 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHH-HHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLK-RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~-~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++.+++|+|||.|-+....+..+ +.+++.|. +.-+.... .++.. .+ ..+..++..+. ...
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~-~l-----------~~k~~~~~~~~---~~~ 172 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKA-YL-----------DNKCNFVVADF---GKM 172 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHH-Hh-----------hhhcceehhhh---hcC
Confidence 3456689999999999999998765 67999987 33222222 22221 11 11222222222 222
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
+..++.||.+-+.+...+......++.++.+.++|||.+..
T Consensus 173 ~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 173 PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence 34578999999999999999999999999999999999765
No 253
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.04 E-value=0.002 Score=51.63 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=52.0
Q ss_pred CCCeEEEeCCCcc-HHHHHH-HHhCCEEEEecch-hhHHHHHHHHHHh-hhccccCCCCCCCCCceEEEEEEecCCC-C-
Q 027594 64 KGKRVIELGAGCG-VAGFGM-ALLGCNVITTDQI-EVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNED-H- 137 (221)
Q Consensus 64 ~~~~vLelGcG~G-~~~l~~-a~~ga~v~~~D~~-~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~~dw~~~~-~- 137 (221)
++.+.||||.|.- +..+.- -..|-+.|++|++ .+++.|+.++..| ++ ...++... .... .
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l-----------~~~I~lr~---qk~~~~i 143 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL-----------ERAIRLRR---QKDSDAI 143 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch-----------hhheeEEe---ccCcccc
Confidence 5668999988753 222222 2347789999985 5999999999998 44 23344432 1111 1
Q ss_pred ---ccccCCCccEEEEcccccC
Q 027594 138 ---IKAVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 138 ---~~~~~~~fD~Vi~~d~~y~ 156 (221)
.-..++.||..++|+++|.
T Consensus 144 f~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 144 FNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred ccccccccceeeeEecCCCcch
Confidence 1123678999999999885
No 254
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.03 E-value=0.00013 Score=51.47 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=36.5
Q ss_pred EEeCCCccHHHHHHHHh---C--CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 69 IELGAGCGVAGFGMALL---G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 69 LelGcG~G~~~l~~a~~---g--a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
||+|+..|..++.+++. . .+++++|.....+..+++++..+. .+++++...+-.+... .....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~-----------~~~~~~~~g~s~~~l~-~~~~~ 68 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGL-----------SDRVEFIQGDSPDFLP-SLPDG 68 (106)
T ss_dssp --------------------------EEEESS------------GGG------------BTEEEEES-THHHHH-HHHH-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCC-----------CCeEEEEEcCcHHHHH-HcCCC
Confidence 79999999888776642 2 369999963323344444444443 3467777633221110 11246
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
+||+|+.. .-+..+....-+..+...|+|||.+++
T Consensus 69 ~~dli~iD-g~H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 69 PIDLIFID-GDHSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp -EEEEEEE-S---HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CEEEEEEC-CCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 89999864 434445566677777888999998765
No 255
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.01 E-value=0.0024 Score=55.40 Aligned_cols=103 Identities=24% Similarity=0.200 Sum_probs=71.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--C-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.+.+|||-=||||+=|+-.++. + .+|++-|+ +++++.+++|++.|++. .+.+.+...|-.... .
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~----------~~~~~v~~~DAn~ll--~ 116 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE----------DERIEVSNMDANVLL--Y 116 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S----------GCCEEEEES-HHHHH--C
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc----------CceEEEehhhHHHHh--h
Confidence 3458999999999999999876 3 36999998 66999999999999972 124666553332211 1
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.....||+|=. |++ .+..++++...+.++.||.+.++..
T Consensus 117 ~~~~~fD~IDl-DPf---GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 117 SRQERFDVIDL-DPF---GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp HSTT-EEEEEE---S---S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred hccccCCEEEe-CCC---CCccHhHHHHHHHhhcCCEEEEecc
Confidence 24678999954 443 3356899999999999999998764
No 256
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.66 E-value=0.0026 Score=55.11 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=54.7
Q ss_pred CcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhh
Q 027594 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS 110 (221)
Q Consensus 32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~ 110 (221)
+.+|..-|.+-+..-+--.+ .-...|..|-|+.||.|..++.+++.++.|++-|. +++++.++.|+..|.+
T Consensus 225 ~DfskVYWnsRL~~Eherls--------g~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv 296 (495)
T KOG2078|consen 225 FDFSKVYWNSRLSHEHERLS--------GLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKV 296 (495)
T ss_pred EecceEEeeccchhHHHHHh--------hccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcccccc
Confidence 45677789943322221111 11235678999999999999999999999999996 8899999999999987
No 257
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.60 E-value=0.039 Score=44.65 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=75.0
Q ss_pred EEEEcCeEEEEeeCCCCCcccceecchHH-HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHH-HhCCE--EE
Q 027594 15 NLEVLGHQLQFSQDPNSKHLGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMA-LLGCN--VI 90 (221)
Q Consensus 15 ~~~~~~~~~~i~~~~~~~~~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a-~~ga~--v~ 90 (221)
.-.+.+.+=...+.+ ....-.++|..-. .||.-|.--.. +.+..+|.+||=||+++|..---.+ -.|.+ |+
T Consensus 111 ge~vYgEkRisv~~~-~~kvEyRVWnPfrSKLAA~I~gGvd----nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VY 185 (317)
T KOG1596|consen 111 GESVYGEKRISVENE-DGKVEYRVWNPFRSKLAAGILGGVD----NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVY 185 (317)
T ss_pred cccccCceEEEeecC-CCcEEEEEeChHHHHHHHHhhcCcc----ceeecCCceEEEeeccCCceeehhhcccCCCceEE
Confidence 334455443344444 3367789998632 34444432111 1356789999999999996433333 34554 88
Q ss_pred Eecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHH
Q 027594 91 TTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFA 169 (221)
Q Consensus 91 ~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ 169 (221)
+++.+. +=..+ -|++... .||..+.-|-..+..-...-.-.|+|++ |+- .++....+.-..+.
T Consensus 186 AVEfs~rsGRdL-~nmAkkR-------------tNiiPIiEDArhP~KYRmlVgmVDvIFa-Dva-qpdq~RivaLNA~~ 249 (317)
T KOG1596|consen 186 AVEFSHRSGRDL-INMAKKR-------------TNIIPIIEDARHPAKYRMLVGMVDVIFA-DVA-QPDQARIVALNAQY 249 (317)
T ss_pred EEEecccchHHH-HHHhhcc-------------CCceeeeccCCCchheeeeeeeEEEEec-cCC-Cchhhhhhhhhhhh
Confidence 888643 21111 1222111 2333322111111100111223455553 332 23445555566677
Q ss_pred hcCCCeEEEEEEEec
Q 027594 170 LSGPKTTILLGYEIR 184 (221)
Q Consensus 170 ll~~~g~~~i~~~~r 184 (221)
.|+++|.++++.+..
T Consensus 250 FLk~gGhfvisikan 264 (317)
T KOG1596|consen 250 FLKNGGHFVISIKAN 264 (317)
T ss_pred hhccCCeEEEEEecc
Confidence 899999999877643
No 258
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.60 E-value=0.016 Score=43.06 Aligned_cols=104 Identities=18% Similarity=0.095 Sum_probs=61.2
Q ss_pred EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC-CCccEEEEcccccCCc-------
Q 027594 88 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA-PPFDYIIGTDVVYAEH------- 158 (221)
Q Consensus 88 ~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~-~~fD~Vi~~d~~y~~~------- 158 (221)
+|++.|+ +++++.+++.++.++. .+++++..-....... ... .++|.++.|=- |-+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----------~~~v~li~~sHe~l~~--~i~~~~v~~~iFNLG-YLPggDk~i~T 66 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----------EDRVTLILDSHENLDE--YIPEGPVDAAIFNLG-YLPGGDKSITT 66 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------------GSGEEEEES-GGGGGG--T--S--EEEEEEEES-B-CTS-TTSB-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----------CCcEEEEECCHHHHHh--hCccCCcCEEEEECC-cCCCCCCCCCc
Confidence 5899997 7799999999999876 3578877643333222 123 48999987633 3221
Q ss_pred ---CHHHHHHHHHHhcCCCeEEEEEEEecChh------HHHHHHHHHh-cCCeEEEe
Q 027594 159 ---LLEPLLQTIFALSGPKTTILLGYEIRSTS------VHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 159 ---~~~~l~~~~~~ll~~~g~~~i~~~~r~~~------~~~~~~~~~~-~~f~v~~v 205 (221)
.--..++.+.++|+|||.+.++....++. ....|++.+. +.|.|...
T Consensus 67 ~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~ 123 (140)
T PF06962_consen 67 KPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKY 123 (140)
T ss_dssp -HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred CcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEE
Confidence 12234555566789999988776655542 2344554443 47877544
No 259
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.58 E-value=0.076 Score=45.60 Aligned_cols=109 Identities=16% Similarity=0.072 Sum_probs=71.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.-.+||-||-|-|+..-.+.+.- .+|+.+|. |.|++.+++|...-.. |.++-..+++++..-|-... ...
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~-----N~~sf~dpRv~Vv~dDAf~w--lr~ 361 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRAL-----NQGSFSDPRVTVVNDDAFQW--LRT 361 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhh-----ccCCccCCeeEEEeccHHHH--HHh
Confidence 34689999999999988888763 36999997 7799999977665433 22222345777766322111 122
Q ss_pred cCCCccEEEEcccccCCcC-----HHHHHHHHHHhcCCCeEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHL-----LEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~-----~~~l~~~~~~ll~~~g~~~i 179 (221)
....||.||..-+=-.... -.++-..+.+.|+++|.+++
T Consensus 362 a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 362 AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 3468999997522111222 24566677888999999876
No 260
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.50 E-value=0.0058 Score=50.84 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=33.9
Q ss_pred eEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHH
Q 027594 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE 106 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~ 106 (221)
+|+||.||.|..++.+...|.+ |.++|. +.+++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 7999999999999999999998 677998 558888877753
No 261
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.0064 Score=51.68 Aligned_cols=107 Identities=14% Similarity=0.233 Sum_probs=64.9
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++..+++||+|.|.|....++-..-. +++.++.+.++...-..++.|.. ....+|.....
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~----------------t~~td~r~s~v 173 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS----------------TEKTDWRASDV 173 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc----------------cccCCCCCCcc
Confidence 567778999999999865544433322 35666655556555556665542 22244443321
Q ss_pred c----c-ccCCCccEEEEcccccCCcC---HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 138 I----K-AVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 138 ~----~-~~~~~fD~Vi~~d~~y~~~~---~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
. + .....|++++..+=+-.... +...++.+..++.|||.++|+...
T Consensus 174 t~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 174 TEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred chhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 1 1 12356888888776665443 334666667778999999887654
No 262
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.39 E-value=0.0058 Score=51.73 Aligned_cols=81 Identities=22% Similarity=0.142 Sum_probs=56.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHH-------HHHHHHHHhhhccccCCCCCCCCCceEEEEEEec
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLP-------LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~-------~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~ 133 (221)
..+|+-|.|=-.|||-+-+.+|..|+-|+++|++. ++. .++.|.++-+. ...-+.+...|..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~----------~~~fldvl~~D~s 275 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGS----------SSQFLDVLTADFS 275 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCC----------cchhhheeeeccc
Confidence 34789999999999999999999999999999865 554 34455555442 1223455565655
Q ss_pred CCCCccccCCCccEEEEcccc
Q 027594 134 NEDHIKAVAPPFDYIIGTDVV 154 (221)
Q Consensus 134 ~~~~~~~~~~~fD~Vi~~d~~ 154 (221)
+..-. .+..||.|++.+++
T Consensus 276 n~~~r--sn~~fDaIvcDPPY 294 (421)
T KOG2671|consen 276 NPPLR--SNLKFDAIVCDPPY 294 (421)
T ss_pred Ccchh--hcceeeEEEeCCCc
Confidence 54322 25689999986653
No 263
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.37 E-value=0.019 Score=48.82 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=64.7
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
...+|+|.|.|.+.-.+...-.+|-+++. +.+++.+.... -+ |..+. ++... . .+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g---------------V~~v~---gdmfq--~-~P 235 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG---------------VEHVA---GDMFQ--D-TP 235 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC---------------cceec---ccccc--c-CC
Confidence 68999999999877766666566666664 44555444321 11 22222 22211 1 34
Q ss_pred CccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 144 PFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+-|+|+.-.+++++ ++...+++.|.+.|+|+|.+++...
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 56799999999984 5688899999999999999998764
No 264
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.26 E-value=0.022 Score=48.78 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=70.9
Q ss_pred CCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~-ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++|||-=||||+=||-.|.. +. +|++-|+ +++++++++|+..|.. .+..+.+.|-... +...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------------~~~~v~n~DAN~l--m~~~ 118 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------------EDAEVINKDANAL--LHEL 118 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc------------ccceeecchHHHH--HHhc
Confidence 679999999999999998864 55 7999998 7799999999999932 2333333211111 1122
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
...||+|=. ||+-. ..++++...+..+.+|.+-+...
T Consensus 119 ~~~fd~IDi-DPFGS---PaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 119 HRAFDVIDI-DPFGS---PAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCccEEec-CCCCC---CchHHHHHHHHhhcCCEEEEEec
Confidence 368998843 55333 45788888888888998887654
No 265
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.075 Score=44.65 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=66.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHH--HHHHHH--hhhcc--------------ccCC-------
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLL--KRNVEW--NTSRI--------------SQMN------- 116 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~--~~n~~~--n~~~~--------------~~~~------- 116 (221)
....+||-=|||.|.++.-+|.+|.++-+-+.+. |+=.- .-|.-+ |...+ .|..
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 3566899999999999999999999888877665 43211 112211 11111 0111
Q ss_pred -CCC--CCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 117 -PGS--DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 117 -~~~--~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
|.+ ...+......+|+.+.-......+.||+|+.+-.+=-.+.+-..++++..+|+|||+.+=
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe
Confidence 110 001112222222222211122235799999882222345677788999999999998653
No 266
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.10 E-value=0.016 Score=48.86 Aligned_cols=98 Identities=20% Similarity=0.189 Sum_probs=62.2
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
....|.+||=+|||+ |++++..|+ .|| +|+.+|. +.-++.|++ .+. ..+...... ....
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga------------~~~~~~~~~-~~~~ 228 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGA------------TVTDPSSHK-SSPQ 228 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCC------------eEEeecccc-ccHH
Confidence 345788999999998 999988886 587 5999997 558888876 221 011110000 0000
Q ss_pred Cc------cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HI------KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~------~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.. ......+|+.+-+ +-.+.-+++.-..++++|.+.++.
T Consensus 229 ~~~~~v~~~~g~~~~d~~~dC------sG~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 229 ELAELVEKALGKKQPDVTFDC------SGAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred HHHHHHHhhccccCCCeEEEc------cCchHHHHHHHHHhccCCEEEEec
Confidence 00 0112347777654 556777788888899999977765
No 267
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.05 E-value=0.092 Score=47.44 Aligned_cols=42 Identities=36% Similarity=0.479 Sum_probs=34.2
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR 103 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~ 103 (221)
..++.+|+=+|||. |+.++.+|+ +|++|+++|. ++.++.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45688999999998 999998875 6999999997 556666654
No 268
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.95 E-value=0.27 Score=42.87 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=87.5
Q ss_pred cCeEEEEeeCCCCCc-ccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhh
Q 027594 19 LGHQLQFSQDPNSKH-LGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEV 97 (221)
Q Consensus 19 ~~~~~~i~~~~~~~~-~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~ 97 (221)
....++++..|.... .-.+.|+++- +||.++..+ ....+ +||=|+=.-|.++..++..+.. ..+|.--+
T Consensus 7 ~~~~~~l~r~p~~~~~~~l~awdaad---e~ll~~~~~-----~~~~~-~~~i~nd~fGal~~~l~~~~~~-~~~ds~~~ 76 (378)
T PRK15001 7 GFRSLTLQRFPATDDVNPLQAWEAAD---EYLLQQLDD-----TEIRG-PVLILNDAFGALSCALAEHKPY-SIGDSYIS 76 (378)
T ss_pred CCceeEEEECCCCCCcCcccccccHH---HHHHHHHhh-----cccCC-CEEEEcCchhHHHHHHHhCCCC-eeehHHHH
Confidence 347788888886544 4589999875 344444311 11223 8999999999999999965553 34664335
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
...++.|++.|++. .+.++.... .+ .....+|+|+.--+ =....++.++..+..++.|++.+
T Consensus 77 ~~~~~~n~~~n~~~----------~~~~~~~~~----~~---~~~~~~d~vl~~~P-K~~~~l~~~l~~l~~~l~~~~~i 138 (378)
T PRK15001 77 ELATRENLRLNGID----------ESSVKFLDS----TA---DYPQQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRI 138 (378)
T ss_pred HHHHHHHHHHcCCC----------cccceeecc----cc---cccCCCCEEEEEeC-CCHHHHHHHHHHHHhhCCCCCEE
Confidence 56778899999862 123433321 11 12456899885211 12344666777777889999998
Q ss_pred EEEEEecC
Q 027594 178 LLGYEIRS 185 (221)
Q Consensus 178 ~i~~~~r~ 185 (221)
+++...+.
T Consensus 139 i~g~~~k~ 146 (378)
T PRK15001 139 IAGAKARD 146 (378)
T ss_pred EEEEecCC
Confidence 76665544
No 269
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.93 E-value=0.043 Score=46.83 Aligned_cols=95 Identities=26% Similarity=0.237 Sum_probs=58.3
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...+|++|+=.|+|- |..++-+|+ +|++|++.|. ++-++.+++- +. -.+ .++.+.+.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GA--------------d~~--i~~~~~~~ 222 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GA--------------DHV--INSSDSDA 222 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CC--------------cEE--EEcCCchh
Confidence 345789999999983 567777776 7999999997 4466666542 21 122 22232222
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.....+.||+|+..-+ ...+...-++|+++|++.++.-
T Consensus 223 ~~~~~~~~d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 223 LEAVKEIADAIIDTVG-------PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred hHHhHhhCcEEEECCC-------hhhHHHHHHHHhcCCEEEEECC
Confidence 2222334999986522 3444555677888888776543
No 270
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.86 E-value=0.21 Score=43.68 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=69.2
Q ss_pred CCCCeEEEeCCCccHHHHHH-HHhC--CEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGM-ALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~-a~~g--a~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
-+|.||||+.|-.|-=+... +.+. ..|++.|.. .-+..++.|+.+.+. .+..+.++|-..+..
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------------~ntiv~n~D~~ef~~- 306 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------------TNTIVSNYDGREFPE- 306 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------------CceEEEccCcccccc-
Confidence 37889999999997544444 3333 248899974 488899999998875 333444443322211
Q ss_pred cccCCCccEEEEccc------ccCC----------------cCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 139 KAVAPPFDYIIGTDV------VYAE----------------HLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~------~y~~----------------~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
....++||-|+..-+ ++.. ..-..|+....+++++||+++.+...-.
T Consensus 307 ~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 307 KEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred cccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 112337999876432 2221 2345577777788899999887665443
No 271
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=95.82 E-value=0.17 Score=41.11 Aligned_cols=140 Identities=11% Similarity=0.106 Sum_probs=95.2
Q ss_pred eecch---HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhcc
Q 027594 37 TVWDA---SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (221)
Q Consensus 37 ~~W~~---~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (221)
++|.+ ...|..|+..- .....+.+ |..=||+-.++-.+.+..-++.+++. |+=...++.|++.
T Consensus 66 RL~~a~~lpa~l~~yl~~i-------~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~----- 132 (279)
T COG2961 66 RLWQAADLPAELEPYLDAV-------RQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAG----- 132 (279)
T ss_pred HHHhcCCchHHHHHHHHHH-------HHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCC-----
Confidence 45554 33566676544 12334433 78888888877777777778999997 6667777777663
Q ss_pred ccCCCCCCCCCceEEEEEE-ecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcC--CCeEEEEEEEecChhHH
Q 027594 113 SQMNPGSDLLGSIQAVELD-WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVH 189 (221)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~d-w~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~--~~g~~~i~~~~r~~~~~ 189 (221)
..++.+...| |........+.++--+|+..+++-...+...+++++.+.++ ++|+..|-++.......
T Consensus 133 ---------d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~ 203 (279)
T COG2961 133 ---------DRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQI 203 (279)
T ss_pred ---------CcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHH
Confidence 2466766532 22211111223456778877777778899999999999887 78998898988777777
Q ss_pred HHHHHHHhc
Q 027594 190 EQMLQMWKS 198 (221)
Q Consensus 190 ~~~~~~~~~ 198 (221)
+.|++.++.
T Consensus 204 ~~f~~~L~~ 212 (279)
T COG2961 204 RRFLRALEA 212 (279)
T ss_pred HHHHHHHhh
Confidence 888877754
No 272
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.79 E-value=0.038 Score=49.15 Aligned_cols=119 Identities=17% Similarity=0.227 Sum_probs=74.2
Q ss_pred eEEEeCCCccHHHHHHHHhCC---EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 67 RVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
.|+|+.+|.|-++.++..... .|+-++.++.+... -.-|+ .-.-.||.+... .-++
T Consensus 368 NVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vI----ydRGL---------------IG~yhDWCE~fs--TYPR 426 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVI----YDRGL---------------IGVYHDWCEAFS--TYPR 426 (506)
T ss_pred eeeeecccccHHHHHhccCCceEEEecccCCCCcchhh----hhccc---------------chhccchhhccC--CCCc
Confidence 799999999988777765542 23333333333222 12222 223468876543 3468
Q ss_pred CccEEEEcccccC---CcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhc-CCeEEEecCCC
Q 027594 144 PFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPKAK 209 (221)
Q Consensus 144 ~fD~Vi~~d~~y~---~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~-~f~v~~v~~~~ 209 (221)
.||+|-++.++-. .-.+..++-++.++|+|+|.++|-+. .++..+....++. .|++..+..+.
T Consensus 427 TYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~---~~vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 427 TYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT---VDVLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred chhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc---HHHHHHHHHHHHhCcceEEEEecCC
Confidence 9999988876543 34588999999999999999988332 2344444444443 56666554443
No 273
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.76 E-value=0.028 Score=44.59 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=40.0
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHH
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKR 103 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~ 103 (221)
-...|.+.+... .-.+|..|||.-||+|..++++.++|.+.+++|+ ++.++.|++
T Consensus 176 kP~~l~~~lI~~--------~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKA--------STNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHH--------HS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHh--------hhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 355666766655 2346889999999999999999999999999998 557777653
No 274
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.66 E-value=0.073 Score=40.70 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=76.6
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHH-HHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGM-ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS 119 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~-a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (221)
++..|++.+.+.. ..+.+|+=|||=+-...+.- ...+.++++.|++. |- +.-
T Consensus 11 T~~~l~~~l~~~~---------~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-----RF--~~~----------- 63 (162)
T PF10237_consen 11 TAEFLARELLDGA---------LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR-----RF--EQF----------- 63 (162)
T ss_pred HHHHHHHHHHHhc---------CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc-----hH--Hhc-----------
Confidence 4567777777542 24578999988765555544 12345688998754 11 111
Q ss_pred CCCCceEEEEEEecCCCCcc-ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 120 DLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 120 ~~~~~v~~~~~dw~~~~~~~-~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
.++ .+...|......++ ....+||+|++.+|+...+.......+++.++++++.++++......
T Consensus 64 --~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~ 128 (162)
T PF10237_consen 64 --GGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEME 128 (162)
T ss_pred --CCc-ceEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHHH
Confidence 112 34455555554432 12569999999999988888889999999999999998887765443
No 275
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.65 E-value=0.052 Score=44.73 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=61.4
Q ss_pred eEEEeCCCc---cHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 67 RVIELGAGC---GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 67 ~vLelGcG~---G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..||||||. |.. -..|+. .++|+-+|. +-++..++.-+..+. .+...++..|..+...+.
T Consensus 71 QFLDlGsGlPT~~nv-HevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------------~g~t~~v~aD~r~p~~iL 137 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNV-HEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------------RGRTAYVQADLRDPEAIL 137 (267)
T ss_dssp EEEEET--S--SS-H-HHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------------TSEEEEEE--TT-HHHHH
T ss_pred eEEEcccCCCCCCCH-hHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------------CccEEEEeCCCCCHHHHh
Confidence 699999995 222 223332 678999998 457777777665543 134678887776654321
Q ss_pred c---c-----CCCccEEEEcccccCC---cCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 140 A---V-----APPFDYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 140 ~---~-----~~~fD~Vi~~d~~y~~---~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
. . ....=.|+...++++. ++...+++.+...|.||+++.|++....
T Consensus 138 ~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 138 AHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp CSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred cCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 1 0 1122345666777763 5688899999999999999999887654
No 276
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.56 E-value=0.079 Score=41.33 Aligned_cols=33 Identities=18% Similarity=0.004 Sum_probs=26.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC-C--EEEEecc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG-C--NVITTDQ 94 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g-a--~v~~~D~ 94 (221)
..++.+|||+||-.|..+-.+-++. . .|.++|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 3468899999999999999887663 3 4888995
No 277
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.54 E-value=0.06 Score=43.57 Aligned_cols=85 Identities=22% Similarity=0.290 Sum_probs=42.0
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
.+|||.=+|.|.-++.+|..|++||+++.+. +..+++.-++...... ......-.++++...|-.+.- .....+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~---~~~~~~~~ri~l~~~d~~~~L--~~~~~s 151 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDP---ELLAEAMRRIQLIHGDALEYL--RQPDNS 151 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHST---TTHHHHHHHEEEEES-CCCHC--CCHSS-
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCc---HhHHHHHhCCEEEcCCHHHHH--hhcCCC
Confidence 4899999999999999999999999999744 3333333332211100 000000135777664433322 234679
Q ss_pred ccEEEEcccccC
Q 027594 145 FDYIIGTDVVYA 156 (221)
Q Consensus 145 fD~Vi~~d~~y~ 156 (221)
||+|.. ||+|.
T Consensus 152 ~DVVY~-DPMFp 162 (234)
T PF04445_consen 152 FDVVYF-DPMFP 162 (234)
T ss_dssp -SEEEE---S--
T ss_pred CCEEEE-CCCCC
Confidence 999997 55564
No 278
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=95.32 E-value=0.018 Score=48.37 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=48.6
Q ss_pred EEeCCCcc-HHHHHHHH-hCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC---CCcc-cc
Q 027594 69 IELGAGCG-VAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE---DHIK-AV 141 (221)
Q Consensus 69 LelGcG~G-~~~l~~a~-~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~---~~~~-~~ 141 (221)
+|||.|+- +..+.-++ .+....+||+.+ .++.++.|+++|++ .+.+.++...-... +... ..
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~l-----------ss~ikvV~~~~~ktll~d~~~~~~ 175 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNL-----------SSLIKVVKVEPQKTLLMDALKEES 175 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccccc-----------ccceeeEEecchhhcchhhhccCc
Confidence 68877653 22222233 355689999966 89999999999987 34555554311111 0111 12
Q ss_pred CCCccEEEEcccccCC
Q 027594 142 APPFDYIIGTDVVYAE 157 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~ 157 (221)
+..||++++|+++|..
T Consensus 176 e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 176 EIIYDFCMCNPPFFEN 191 (419)
T ss_pred cceeeEEecCCchhhc
Confidence 4469999999999853
No 279
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.31 E-value=0.13 Score=45.64 Aligned_cols=97 Identities=19% Similarity=0.303 Sum_probs=64.8
Q ss_pred CeEEEeCCCccHHHHHHHHhCCE-EEEecchh-hHHHHH-HHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLK-RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~-v~~~D~~~-~l~~~~-~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
-++|.+|||.--++.-+-+-|.+ |+.+|++. +++.+. +|+..+ ....+...|. .....+.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~--------------~~~~~~~~d~---~~l~fed 112 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER--------------PEMQMVEMDM---DQLVFED 112 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC--------------cceEEEEecc---hhccCCC
Confidence 38999999999888888877876 99999855 555443 343221 2344444333 2334567
Q ss_pred CCccEEEEcccc----------cCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 143 PPFDYIIGTDVV----------YAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 143 ~~fD~Vi~~d~~----------y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
++||+||.=..+ ++.......+..+.++++++|++..
T Consensus 113 ESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 113 ESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 889999874333 2333455677888999999998654
No 280
>PRK11524 putative methyltransferase; Provisional
Probab=95.29 E-value=0.07 Score=44.55 Aligned_cols=46 Identities=20% Similarity=0.134 Sum_probs=40.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHH
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~ 107 (221)
-.+|..|||--||+|..++++.++|.+.+++|+ ++-++.+++.++.
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 357889999999999999999999999999998 5688888877654
No 281
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.08 E-value=0.31 Score=42.49 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=16.1
Q ss_pred CCCeEEEeCCCccHHHHHHH
Q 027594 64 KGKRVIELGAGCGVAGFGMA 83 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a 83 (221)
+..+|+|+|||+|..++.+.
T Consensus 63 ~~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred cceeEEEecCCCCccHHHHH
Confidence 35689999999998877663
No 282
>PRK13699 putative methylase; Provisional
Probab=94.87 E-value=0.13 Score=41.61 Aligned_cols=46 Identities=13% Similarity=0.007 Sum_probs=39.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n 108 (221)
.+|..|||--||+|..++++.++|.+++++|+ ++-.+.+.+.++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999998 55777777766543
No 283
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.81 E-value=0.047 Score=45.17 Aligned_cols=111 Identities=18% Similarity=0.222 Sum_probs=66.3
Q ss_pred cccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhc
Q 027594 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSR 111 (221)
Q Consensus 33 ~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~ 111 (221)
.+....||-.. +|+... -.+..++|.|||.|-....- -...+++.|... .+..+++.
T Consensus 27 ~tr~~~Wp~v~---qfl~~~----------~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~------- 84 (293)
T KOG1331|consen 27 ATRAAPWPMVR---QFLDSQ----------PTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS------- 84 (293)
T ss_pred ccccCccHHHH---HHHhcc----------CCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC-------
Confidence 34566787543 344422 24789999999998321110 112477788643 44433320
Q ss_pred cccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC---HHHHHHHHHHhcCCCeEEEE
Q 027594 112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~---~~~l~~~~~~ll~~~g~~~i 179 (221)
+...... .+....+....+||.+++..++++.+. -...++.+.+.++|||..++
T Consensus 85 -----------~~~~~~~---ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 85 -----------GGDNVCR---ADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred -----------CCceeeh---hhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 1111112 222334455789999999999998554 45677888888999998655
No 284
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.70 E-value=0.034 Score=46.77 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=43.4
Q ss_pred eEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
+++||-||.|.+++.+...|.+ +.++|+ +.+.+.-+.|.. .....|.........+. .
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------------~~~~~Di~~~~~~~l~~-~ 61 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------------EVICGDITEIDPSDLPK-D 61 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------------EEEESHGGGCHHHHHHH-T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------------ccccccccccccccccc-c
Confidence 7999999999999999999987 678898 557777777654 11222222222111222 5
Q ss_pred ccEEEEccccc
Q 027594 145 FDYIIGTDVVY 155 (221)
Q Consensus 145 fD~Vi~~d~~y 155 (221)
+|++++++|.-
T Consensus 62 ~D~l~ggpPCQ 72 (335)
T PF00145_consen 62 VDLLIGGPPCQ 72 (335)
T ss_dssp -SEEEEE---T
T ss_pred ceEEEeccCCc
Confidence 99999997754
No 285
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.68 E-value=0.059 Score=38.07 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=27.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ 94 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~ 94 (221)
+....+|||||.|++--.+.+.|.+=.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 3457999999999999999999988888885
No 286
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.68 E-value=0.25 Score=39.15 Aligned_cols=115 Identities=10% Similarity=-0.002 Sum_probs=64.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+...+.|||||-|-+-+.++.+-.+ +.+.++ ..+-+..+..|+..... +.+....++.+....--.....-.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~-----~a~~~~~ni~vlr~namk~lpn~f 134 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRT-----SAEGQYPNISVLRTNAMKFLPNFF 134 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcc-----ccccccccceeeeccchhhccchh
Confidence 3457999999999888888887664 778887 44777777777654421 111112344444321111100000
Q ss_pred cC--CCccEEEEcccccCC------cCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VA--PPFDYIIGTDVVYAE------HLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~--~~fD~Vi~~d~~y~~------~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.. -+-+..+--|+-+.. -.-..++.....+|++||.+|.....
T Consensus 135 ~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 135 EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 00 011333333443321 12345778888899999999886543
No 287
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.66 E-value=0.019 Score=47.82 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=41.8
Q ss_pred CCCeEEEeCCCccHHHH-HHHHhCCE-EEEecc-hhhHHHHHHHHHHhhh
Q 027594 64 KGKRVIELGAGCGVAGF-GMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS 110 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l-~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~ 110 (221)
.+..|.||-+|.|.+.+ .+.+.||+ |.+.|. |.+++.+++|++.|+.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V 243 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV 243 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch
Confidence 34689999999999999 77788987 999997 7799999999999976
No 288
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.57 E-value=0.36 Score=41.14 Aligned_cols=94 Identities=22% Similarity=0.251 Sum_probs=53.9
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCc-eEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS-IQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~-v~~~~~dw~~~~~ 137 (221)
.++.+||=.|||. |..++.+|+ +|+ +|+++|. ++-++.+++ .+. +. +.....++. .
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa------------~~vi~~~~~~~~---~ 228 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGA------------DKLVNPQNDDLD---H 228 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCC------------cEEecCCcccHH---H
Confidence 3688999999986 777777775 487 5889986 455555543 221 00 000000110 0
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.......+|+|+-+ .- ....+....++++++|++++..
T Consensus 229 ~~~~~g~~D~vid~--~G----~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 229 YKAEKGYFDVSFEV--SG----HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred HhccCCCCCEEEEC--CC----CHHHHHHHHHHhhcCCEEEEEc
Confidence 11112358888743 22 2345566778889999987654
No 289
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.43 E-value=0.58 Score=40.08 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=15.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHH
Q 027594 63 LKGKRVIELGAGCGVAGFGMAL 84 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~ 84 (221)
.+..+|+|+||.+|..++.+..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHH
Confidence 3456999999999988887653
No 290
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.43 E-value=1.2 Score=38.36 Aligned_cols=132 Identities=15% Similarity=0.088 Sum_probs=70.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC--C----EEEEecch-hhHHHHHHHHH-HhhhccccCCCCCCCCCceEEEEEEec
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG--C----NVITTDQI-EVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWG 133 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g--a----~v~~~D~~-~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~v~~~~~dw~ 133 (221)
..+|.+|||+.+-.|-=++.+.... . .|++-|.. .=+..+++-+. .+. .++.+...+-.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-------------~~~~v~~~~~~ 219 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-------------PNLLVTNHDAS 219 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-------------cceeeecccce
Confidence 3478899999999997665554332 2 58899973 32222222221 111 12222222221
Q ss_pred CCCCc------cccCCCccEEEEcccccCC------------------------cCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 134 NEDHI------KAVAPPFDYIIGTDVVYAE------------------------HLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 134 ~~~~~------~~~~~~fD~Vi~~d~~y~~------------------------~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
..... ......||-|++. +.... ..--.++..-.++|++||.++.+...
T Consensus 220 ~~p~~~~~~~~~~~~~~fDrVLvD-VPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 220 LFPNIYLKDGNDKEQLKFDRVLVD-VPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred eccccccccCchhhhhhcceeEEe-cccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 11111 1123578888762 22210 01223666677889999998876643
Q ss_pred ----cChhHHHHHHHHHhcCCeEEEecC
Q 027594 184 ----RSTSVHEQMLQMWKSNFNVKLVPK 207 (221)
Q Consensus 184 ----r~~~~~~~~~~~~~~~f~v~~v~~ 207 (221)
.+..+....++.+...+.+..+..
T Consensus 299 LnpieNEaVV~~~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 299 LNPIENEAVVQEALQKVGGAVELVDVSG 326 (375)
T ss_pred CCchhhHHHHHHHHHHhcCcccceeecc
Confidence 444566666666666666654433
No 291
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.41 E-value=0.11 Score=44.71 Aligned_cols=97 Identities=25% Similarity=0.245 Sum_probs=58.1
Q ss_pred CCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-
Q 027594 64 KGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a~~-ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~- 138 (221)
++.+|+=+|||+ |++++.+++. |+ +|+++|. ++=++.+++-... +.+....-+ ......
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------------~~~~~~~~~-~~~~~~~ 231 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------------DVVVNPSED-DAGAEIL 231 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------------eEeecCccc-cHHHHHH
Confidence 444999999998 9999888764 76 5899997 5566666652111 001000000 000000
Q ss_pred cc-cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 KA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~-~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.. ....+|+++=+-- ....+..+.++++|+|.+.+...
T Consensus 232 ~~t~g~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 232 ELTGGRGADVVIEAVG------SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred HHhCCCCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEec
Confidence 11 1246899885522 45577888889999999777543
No 292
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.33 E-value=0.15 Score=43.58 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=34.8
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHH
Q 027594 65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE 106 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~ 106 (221)
..+++||-||.|.+++.+...|.+ +.+.|+ +.+++.-+.|..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 368999999999999999999998 566798 558877777654
No 293
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.29 E-value=0.098 Score=40.33 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=61.6
Q ss_pred EEEEEEecCCCCccc-cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEE
Q 027594 126 QAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL 204 (221)
Q Consensus 126 ~~~~~dw~~~~~~~~-~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~ 204 (221)
.+...|...+.+++. ....||+|++.+++...+.+..-..++..+.++.-+++++...+-.+.....+...+-.|..+
T Consensus 116 eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~s~~l~~~~~sF~Pe- 194 (217)
T KOG3350|consen 116 EFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWASALLPVLKCSFRPE- 194 (217)
T ss_pred eeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHHHHHhhhhhccccch-
Confidence 556667776665542 346799999999988888889999999999999989998887655444444444334456544
Q ss_pred ecCCCCCcccCCC
Q 027594 205 VPKAKESTMWGNP 217 (221)
Q Consensus 205 v~~~~~~~~~~~~ 217 (221)
...-+..+|+..
T Consensus 195 -H~~nLaNeF~cy 206 (217)
T KOG3350|consen 195 -HERNLANEFRCY 206 (217)
T ss_pred -hhcccccceeEE
Confidence 334455555543
No 294
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.02 E-value=0.047 Score=48.42 Aligned_cols=105 Identities=22% Similarity=0.171 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC-C
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-H 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~-~ 137 (221)
.++.+|||-=|+||+-+|-.|+. |. +|++.|. +.+++..++|++.|+. .+.+.....|-.... .
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----------~~ive~~~~DA~~lM~~ 176 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----------EDIVEPHHSDANVLMYE 176 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----------hhhcccccchHHHHHHh
Confidence 35679999999999999999975 33 5999997 5599999999999964 233333332222111 1
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+.....||+|=. |++-. ...+++...+.++.||.+++...
T Consensus 177 ~~~~~~~FDvIDL-DPyGs---~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 177 HPMVAKFFDVIDL-DPYGS---PSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ccccccccceEec-CCCCC---ccHHHHHHHHHhhcCCEEEEEec
Confidence 1233578999854 45332 34778888888999999888543
No 295
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=0.59 Score=35.16 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=58.1
Q ss_pred CeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
.+.+|||+|-|.+-+.+++.|. .-++++. +-.+...+..+-+.+. .....+..-|.-.. ..+
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-----------~k~trf~RkdlwK~-----dl~ 137 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-----------AKSTRFRRKDLWKV-----DLR 137 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-----------ccchhhhhhhhhhc-----ccc
Confidence 4899999999999999999995 4889997 5588888877666664 23344443221111 123
Q ss_pred Ccc--EEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 144 PFD--YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 144 ~fD--~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.|. +|+.. ++.+..|...+..-+..+..++-
T Consensus 138 dy~~vviFga-----es~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 138 DYRNVVIFGA-----ESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred ccceEEEeeh-----HHHHhhhHHHHHhhCcCCCeEEE
Confidence 333 33332 34455566666655666666544
No 296
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.61 E-value=0.38 Score=41.11 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=52.6
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc----hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ----IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~----~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.++.+||=+|+|. |..++.+|+ .|++|++++. ++-++.++ ..+. .. .++.+..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~----~~Ga---------------~~--v~~~~~~ 229 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE----ELGA---------------TY--VNSSKTP 229 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH----HcCC---------------EE--ecCCccc
Confidence 3678999999986 777776665 5889998874 22333332 2221 11 1111110
Q ss_pred Cc-cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~-~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.. ......+|+|+-+ .- ....+....++++++|++++..
T Consensus 230 ~~~~~~~~~~d~vid~--~g----~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 230 VAEVKLVGEFDLIIEA--TG----VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred hhhhhhcCCCCEEEEC--cC----CHHHHHHHHHHccCCcEEEEEe
Confidence 00 0113468888854 22 2235667778899999877644
No 297
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.49 E-value=0.97 Score=40.81 Aligned_cols=108 Identities=15% Similarity=0.051 Sum_probs=65.8
Q ss_pred CCCeEEEeCCCccHHHHHHHH-hC-----CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMAL-LG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~-~g-----a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
+..+|.|--||+|..-+.+++ .+ ..+++.+. +....+++.|+-.++... .+.....+--...
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----------~~~i~~~dtl~~~ 254 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----------DANIRHGDTLSNP 254 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----------cccccccccccCC
Confidence 445999999999855444443 22 34788896 569999999999988621 1111111000000
Q ss_pred Cc--cccCCCccEEEEcccccCC-------------------------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 137 HI--KAVAPPFDYIIGTDVVYAE-------------------------HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 137 ~~--~~~~~~fD~Vi~~d~~y~~-------------------------~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.. .....+||+|++++++... ..-..++..+...|+|+|+.-++.+
T Consensus 255 ~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 255 KHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred cccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 00 1234679999999997510 0125577888888999876555443
No 298
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.83 E-value=0.34 Score=41.98 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=66.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++....|||+|.|-+...+|. .++ +-+++++ ...-+.+..|...+.-...-++ .....+..++.+.-.....
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG---k~~~~~~~i~gsf~~~~~v 266 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG---KKPNKIETIHGSFLDPKRV 266 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhC---CCcCceeecccccCCHHHH
Confidence 34677899999999866555554 443 2445543 2233333333333221100000 0023455555444443333
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.......++|+++.+.+.++....+- .+.+-+++|.+++-.-+
T Consensus 267 ~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 267 TEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIISSKP 309 (419)
T ss_pred HHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEecccc
Confidence 33456789999999999988776666 66777888888765433
No 299
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=92.81 E-value=0.46 Score=38.82 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
..+|+|||||.=-+++.+... ++.+++.|+ ..+++.+..-+..-+. ...+...|.-.. .+
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-------------~~~~~v~Dl~~~----~~ 168 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-------------PHDARVRDLLSD----PP 168 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--------------CEEEEEE-TTTS----HT
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-------------CcceeEeeeecc----CC
Confidence 569999999988888876654 468999998 4588888876665543 344444332211 23
Q ss_pred CCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
....|+.+.-=++.-.+. ....++.+..+ ..-.++++++.|+
T Consensus 169 ~~~~DlaLllK~lp~le~q~~g~g~~ll~~~--~~~~~vVSfPtrS 212 (251)
T PF07091_consen 169 KEPADLALLLKTLPCLERQRRGAGLELLDAL--RSPHVVVSFPTRS 212 (251)
T ss_dssp TSEESEEEEET-HHHHHHHSTTHHHHHHHHS--CESEEEEEEES--
T ss_pred CCCcchhhHHHHHHHHHHHhcchHHHHHHHh--CCCeEEEeccccc
Confidence 567899987644332110 11112222222 2346777887655
No 300
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.48 E-value=0.38 Score=35.08 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=29.8
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCc-cHHHHHHHHhCCEEEEecchh
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC-GVAGFGMALLGCNVITTDQIE 96 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~-G~~~l~~a~~ga~v~~~D~~~ 96 (221)
-+|+|+..+. ...+++|+|-|- --.+..++..|..|++||+.+
T Consensus 3 ~~a~~ia~~~----------~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~ 46 (127)
T PF03686_consen 3 DFAEYIARLN----------NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINP 46 (127)
T ss_dssp HHHHHHHHHS-----------SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-
T ss_pred hHHHHHHHhC----------CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcc
Confidence 4788887552 334999999997 567888889999999999743
No 301
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.45 E-value=0.57 Score=39.55 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=43.6
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHH
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~ 107 (221)
++|.+.+.+.+ ...+|..++|.=+|.|--+..+++. ..+|++.|. ++++..+++.++.
T Consensus 6 pVll~Evl~~L-------~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 6 SVLLDEVVEGL-------NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred chhHHHHHHhc-------CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 45555555442 2236679999999999999988865 368999997 6799999887764
No 302
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.42 E-value=1.1 Score=37.61 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=42.6
Q ss_pred CCCCCeEEEeCCCccHH-HH--HHHHhCCE-EEEecch----hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEec
Q 027594 62 KLKGKRVIELGAGCGVA-GF--GMALLGCN-VITTDQI----EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~-~l--~~a~~ga~-v~~~D~~----~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~ 133 (221)
..+++++|=+|+| |.- ++ .++..|++ |+.++.. +..+.+.+.+... ...+.+...+|.
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~-------------~~~~~~~~~d~~ 188 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE-------------VPECIVNVYDLN 188 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc-------------CCCceeEEechh
Confidence 4578899999998 532 22 24467885 9888853 2222222222211 122334445664
Q ss_pred CCCCccccCCCccEEEEcccccC
Q 027594 134 NEDHIKAVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 134 ~~~~~~~~~~~fD~Vi~~d~~y~ 156 (221)
+.......-..+|+||.+-++-.
T Consensus 189 ~~~~~~~~~~~~DilINaTp~Gm 211 (289)
T PRK12548 189 DTEKLKAEIASSDILVNATLVGM 211 (289)
T ss_pred hhhHHHhhhccCCEEEEeCCCCC
Confidence 43222212235688888766543
No 303
>PRK11524 putative methyltransferase; Provisional
Probab=92.41 E-value=0.21 Score=41.73 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=32.4
Q ss_pred cCCCccEEEEcccccCC----------------cCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VAPPFDYIIGTDVVYAE----------------HLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~----------------~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
..++||+|+++++++.. ..+..++..+.++|+|+|.+++....
T Consensus 24 ~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 24 PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 35789999999886521 11356888999999999999986543
No 304
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.40 E-value=0.86 Score=38.24 Aligned_cols=84 Identities=12% Similarity=0.010 Sum_probs=49.8
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+||=+|||. |+.++.+|+ +|++ |+++|. ++-++.++.. .. +.. ...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~--------------i~~-----~~~---- 196 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV--------------LDP-----EKD---- 196 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc--------------cCh-----hhc----
Confidence 567899999986 888887775 5887 666775 3333333211 00 000 000
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
....+|+|+-+ .- ....+....++++++|++++..
T Consensus 197 -~~~g~Dvvid~--~G----~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 197 -PRRDYRAIYDA--SG----DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred -cCCCCCEEEEC--CC----CHHHHHHHHHhhhcCcEEEEEe
Confidence 13468888743 22 2345667778899999987643
No 305
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.13 E-value=1.4 Score=35.09 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=52.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh------CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~------ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
+.+.|+|+|.=.|--.+..|.+ .++|+++|+. .... +..++..-. .++|++...+..+.+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~-----------~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPM-----------SPRITFIQGDSIDPE 98 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG---------------TTEEEEES-SSSTH
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccc-----------cCceEEEECCCCCHH
Confidence 5679999999888766666542 3579999972 2111 111111111 367899886665543
Q ss_pred Ccc---cc--CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HIK---AV--APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~~---~~--~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
... .. .....+|+ -|.=+..++.-.-++....++++|+++++.+
T Consensus 99 ~~~~v~~~~~~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 99 IVDQVRELASPPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp HHHTSGSS----SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred HHHHHHHhhccCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 221 11 12233444 4666777777788888999999999988743
No 306
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.03 E-value=1.1 Score=37.46 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=57.9
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..+..|+.||==|.|.|+ +++.+|++|++++..|+ ++..+...+.++.++ +++....|..+.
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--------------~~~~y~cdis~~ 98 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--------------EAKAYTCDISDR 98 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--------------ceeEEEecCCCH
Confidence 356789999999999984 78888999999999997 455555555555543 467777777776
Q ss_pred CCc-------cccCCCccEEEEcccc
Q 027594 136 DHI-------KAVAPPFDYIIGTDVV 154 (221)
Q Consensus 136 ~~~-------~~~~~~fD~Vi~~d~~ 154 (221)
++. ...-+..|+++.|--+
T Consensus 99 eei~~~a~~Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 99 EEIYRLAKKVKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHHHHHHHHHHhcCCceEEEecccc
Confidence 543 1234678988887443
No 307
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=92.00 E-value=0.66 Score=38.27 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=66.7
Q ss_pred CeEEEeCCCccHHHHHHHH-hCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC---cc--
Q 027594 66 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---IK-- 139 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~-~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~---~~-- 139 (221)
..|+.||||.=.-+.-+.. .+..++=+|.|++++.=++-+..++.. ...+.+++..|.. ..- +.
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~---------~~~~~~~v~~Dl~-~~w~~~L~~~ 152 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAE---------PPAHRRAVPVDLR-QDWPAALAAA 152 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCC---------CCCceEEeccCch-hhHHHHHHhC
Confidence 3699999996544444432 245677788888887777766654421 1345666666654 110 10
Q ss_pred -ccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 -AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 -~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
......-++++-.+++. .+....+++.+.+...||+.+++-+.
T Consensus 153 gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 153 GFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 11123446666666544 56688899999998889998877543
No 308
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.84 E-value=1.1 Score=37.75 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=56.7
Q ss_pred CeEEEeCCCc--cHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~--G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++|+=+|||. |+++..+++.|.+|++++- .+-++..++ .+++.... . .....+ ..... .....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~---~~Gl~i~~--~----g~~~~~-~~~~~----~~~~~ 68 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ---AGGLTLVE--Q----GQASLY-AIPAE----TADAA 68 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh---cCCeEEee--C----Ccceee-ccCCC----Ccccc
Confidence 5799999997 5788888888999999986 344444433 12221110 0 000111 10000 11123
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.+||+|+.+==-| +....++.+..++.+++.++...
T Consensus 69 ~~~D~viv~vK~~---~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 69 EPIHRLLLACKAY---DAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred cccCEEEEECCHH---hHHHHHHHHHhhCCCCCEEEEEe
Confidence 5899998752222 35667778888888888765543
No 309
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.55 E-value=0.51 Score=40.98 Aligned_cols=42 Identities=31% Similarity=0.374 Sum_probs=31.3
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKR 103 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~ 103 (221)
..++.+||.+|||+ |...+.+|+ .|+ +|+++|. ++.++.+++
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 34678999999987 877777775 476 5999986 556666664
No 310
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.36 E-value=1.8 Score=36.19 Aligned_cols=96 Identities=22% Similarity=0.298 Sum_probs=53.3
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCce-EEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSI-QAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v-~~~~~dw~~~~~ 137 (221)
...+.+||..|+|. |...+.+|+ +|.+|++++. ++..+.+++ .+. +.+ .....++....
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~------------~~~~~~~~~~~~~~~- 225 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGA------------DEVLNSLDDSPKDKK- 225 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC------------CEEEcCCCcCHHHHH-
Confidence 34567888888874 777666665 6889989886 444444432 221 000 00000000000
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.......+|+|+-+ .. ....+..+.+.|+++|.++..
T Consensus 226 ~~~~~~~~D~vid~--~g----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 226 AAGLGGGFDVIFDF--VG----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHhcCCCceEEEEC--CC----CHHHHHHHHHHhhcCCEEEEE
Confidence 01124578988843 21 134667778889999998754
No 311
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.26 E-value=1.5 Score=39.80 Aligned_cols=40 Identities=35% Similarity=0.485 Sum_probs=30.4
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~ 102 (221)
.++.+||=+|||. |+.++.+++ +|++|++.|. ++.++.++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4568999999997 888877664 6999999997 44544444
No 312
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.84 E-value=0.51 Score=41.16 Aligned_cols=75 Identities=23% Similarity=0.357 Sum_probs=47.8
Q ss_pred CeEEEeCCCc-cHHHH-HHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 66 KRVIELGAGC-GVAGF-GMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 66 ~~vLelGcG~-G~~~l-~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++||=||||. |.... -+|+.+ .+|+..|- .+....+..+. ..+++...+|..+.+.+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----------------~~~v~~~~vD~~d~~al~~l 65 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----------------GGKVEALQVDAADVDALVAL 65 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----------------cccceeEEecccChHHHHHH
Confidence 5799999975 54332 335556 68999996 34444333221 13678888888777655444
Q ss_pred CCCccEEEEcccccC
Q 027594 142 APPFDYIIGTDVVYA 156 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~ 156 (221)
-..+|+||..-+.|.
T Consensus 66 i~~~d~VIn~~p~~~ 80 (389)
T COG1748 66 IKDFDLVINAAPPFV 80 (389)
T ss_pred HhcCCEEEEeCCchh
Confidence 566799998766553
No 313
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.58 E-value=2.9 Score=34.44 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=52.2
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++.+||=+|+|+ |+.++.+|+ +|++ |+++|. ++-++.+++ .+.. .-+..... .......
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~-----------~~i~~~~~-~~~~~~~ 182 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT-----------ALAEPEVL-AERQGGL 182 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc-----------EecCchhh-HHHHHHH
Confidence 3788999999886 777666665 5876 888885 444444433 1210 00000000 0000000
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.....+|+|+-+ . -....+....++++++|++++..
T Consensus 183 -~~~~g~d~vid~--~----G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 183 -QNGRGVDVALEF--S----GATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred -hCCCCCCEEEEC--C----CChHHHHHHHHHhcCCCEEEEec
Confidence 112468888743 1 12345666678889999987644
No 314
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.30 E-value=4 Score=32.31 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=43.7
Q ss_pred CCCeEEEeCCCccHHHH---HHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGF---GMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l---~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++||=.|++.|+-.. .+++.|++|++++. ++..+.+...+... .++.+...|+.+.....
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~~~~ 69 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--------------GNIHYVVGDVSSTESAR 69 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCeEEEECCCCCHHHHH
Confidence 57899999987543222 23346899999986 43443332222211 24566677776654221
Q ss_pred -------ccCCCccEEEEccccc
Q 027594 140 -------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 140 -------~~~~~fD~Vi~~d~~y 155 (221)
..-.+.|.++.+-..+
T Consensus 70 ~~~~~~~~~~~~id~ii~~ag~~ 92 (238)
T PRK05786 70 NVIEKAAKVLNAIDGLVVTVGGY 92 (238)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCc
Confidence 1123568887665444
No 315
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=89.98 E-value=0.55 Score=38.22 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=30.8
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI 95 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~ 95 (221)
.|+.+|.+.+ |.. +..+++|+-||+|.+++.+...+.+|+.-|+.
T Consensus 7 ~l~~~I~~~i------p~~-~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~ 51 (260)
T PF02086_consen 7 KLAKWIIELI------PKN-KHKTYVEPFAGGGSVFLNLKQPGKRVIINDIN 51 (260)
T ss_dssp GGHHHHHHHS-------S--S-SEEEETT-TTSHHHHCC---SSEEEEEES-
T ss_pred HHHHHHHHHc------CCC-CCCEEEEEecchhHHHHHhcccccceeeeech
Confidence 4566777664 222 67899999999999999998888899999973
No 316
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=89.90 E-value=3 Score=35.28 Aligned_cols=89 Identities=17% Similarity=0.046 Sum_probs=52.6
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..+|.+||=.|+|. |..++.+|+ +|++|++++. ++-.+.+++ .+. +. +... .+.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga------------~~--vi~~--~~~--- 219 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGA------------AS--AGGA--YDT--- 219 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCC------------ce--eccc--ccc---
Confidence 34688999999875 666665654 5889988885 444444443 221 11 1110 000
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..+.+|+++-.+.. ...+....++++++|++++..
T Consensus 220 --~~~~~d~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 220 --PPEPLDAAILFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred --CcccceEEEECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 12357877655442 245666778899999987644
No 317
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.86 E-value=0.87 Score=38.97 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=52.7
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+||=.|||. |..++.+|+ .|++ |+++|. ++-.+.+++ .+.. .-+.....+|.....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~-----------~~i~~~~~~~~~~i~ 238 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT-----------HTVNSSGTDPVEAIR 238 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc-----------eEEcCCCcCHHHHHH
Confidence 34678999999875 777776665 5875 999986 444454432 2210 001111111110000
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.......+|+|+ |+.-. ...+....++++++|++++..
T Consensus 239 ~~~~~~g~d~vi--d~~g~----~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 239 ALTGGFGADVVI--DAVGR----PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred HHhCCCCCCEEE--ECCCC----HHHHHHHHHHhccCCEEEEEC
Confidence 001124689888 34332 234455567889999877643
No 318
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.81 E-value=1.9 Score=36.41 Aligned_cols=98 Identities=20% Similarity=0.218 Sum_probs=55.1
Q ss_pred CCeEEEeCCCc--cHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 65 GKRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 65 ~~~vLelGcG~--G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
.++|+=+|+|. |.++..+++.|.+|++..... .+. +..+++.... . .+...+......... ...
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~----~~~~g~~~~~--~----~~~~~~~~~~~~~~~---~~~ 70 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEA----VRENGLQVDS--V----HGDFHLPPVQAYRSA---EDM 70 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHH----HHhCCeEEEe--C----CCCeeecCceEEcch---hhc
Confidence 36899999997 567888888899998887532 222 2334432110 0 011111111111111 123
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
..+|+|+.+=..|. ...+++.+..++++++.++.
T Consensus 71 ~~~D~vilavK~~~---~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 71 PPCDWVLVGLKTTA---NALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCCCEEEEEecCCC---hHhHHHHHhhhcCCCCEEEE
Confidence 57999988744443 35677778888888887554
No 319
>PRK13699 putative methylase; Provisional
Probab=89.81 E-value=1.2 Score=35.97 Aligned_cols=59 Identities=15% Similarity=0.366 Sum_probs=38.1
Q ss_pred cCCCccEEEEcccccC------C---------cCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeE
Q 027594 141 VAPPFDYIIGTDVVYA------E---------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV 202 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~------~---------~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v 202 (221)
+++++|+|+.++|+.. . +-...++..+.++|||||.+++....+.. ..+...++ .+|.+
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~---~~~~~al~~~GF~l 91 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRV---DRFMAAWKNAGFSV 91 (227)
T ss_pred CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccH---HHHHHHHHHCCCEE
Confidence 4678999998888641 0 11356778888999999988775443322 33444443 46765
No 320
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.73 E-value=3.9 Score=34.58 Aligned_cols=99 Identities=26% Similarity=0.321 Sum_probs=59.2
Q ss_pred CeEEEeCCCc--cHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 66 ~~vLelGcG~--G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
++|+=+|||. |+++..+++.|..|+++-.++-++..+++ ++.+.... .+...... .........
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~----GL~i~~~~------~~~~~~~~----~~~~~~~~~ 66 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKK----GLRIEDEG------GNFTTPVV----AATDAEALG 66 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhC----CeEEecCC------Cccccccc----cccChhhcC
Confidence 4788899997 57888899999667777655445555543 43221100 00011110 011112245
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
++|+||..- -....+..++.+..++++...+++..
T Consensus 67 ~~Dlviv~v---Ka~q~~~al~~l~~~~~~~t~vl~lq 101 (307)
T COG1893 67 PADLVIVTV---KAYQLEEALPSLAPLLGPNTVVLFLQ 101 (307)
T ss_pred CCCEEEEEe---ccccHHHHHHHhhhcCCCCcEEEEEe
Confidence 899998763 33457788889999999998876644
No 321
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=88.96 E-value=1.3 Score=34.84 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=33.7
Q ss_pred ccEEEEcccccCCcC-------------------HHHHHHHHHHhcCCCeEEEEEEEecChh--HHHHHHHHHhcCCeE
Q 027594 145 FDYIIGTDVVYAEHL-------------------LEPLLQTIFALSGPKTTILLGYEIRSTS--VHEQMLQMWKSNFNV 202 (221)
Q Consensus 145 fD~Vi~~d~~y~~~~-------------------~~~l~~~~~~ll~~~g~~~i~~~~r~~~--~~~~~~~~~~~~f~v 202 (221)
.|+|+.++|+..... +..++..+.++|+|+|.+++....+... ......+.++ +|.+
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g-~~~~ 78 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG-GFFL 78 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT-T-EE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh-hhhe
Confidence 377887777654333 5667888899999999998876665544 2333344444 3544
No 322
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.90 E-value=1.5 Score=37.81 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=28.4
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~ 102 (221)
..++.+||=+|+|. |..++.+|+ +|+ +|+++|. ++-++.++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~ 233 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR 233 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 34678888899875 766666665 588 5999986 44444443
No 323
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.51 E-value=1 Score=32.31 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=25.6
Q ss_pred CeEEEeCCCcc-HHHHHHHHhCCEEEEecchh
Q 027594 66 KRVIELGAGCG-VAGFGMALLGCNVITTDQIE 96 (221)
Q Consensus 66 ~~vLelGcG~G-~~~l~~a~~ga~v~~~D~~~ 96 (221)
.+|.|+|-|-= -.+-.++++|..|++||+.+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~ 46 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINE 46 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEeccc
Confidence 39999998863 46777888999999999854
No 324
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=88.46 E-value=9.5 Score=29.18 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=35.4
Q ss_pred cCCCccEEEEcccccC-------------CcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 141 VAPPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~-------------~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
...+||.|+-+-|-.. ...+..++..+.++|+++|.+.|+.....+
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 3578999998866443 235667888888899999999998877655
No 325
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=88.43 E-value=10 Score=30.39 Aligned_cols=103 Identities=14% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCCeEEEeCCCcc----HHHHHHHHh--CCEEEEec-chhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 64 KGKRVIELGAGCG----VAGFGMALL--GCNVITTD-QIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 64 ~~~~vLelGcG~G----~~~l~~a~~--ga~v~~~D-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.-+.++|..|+.| .++|++|.. |.+++++- ..+.+...++.+...+. .+.+.++. ++..
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----------~~~vEfvv---g~~~ 106 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----------SDVVEFVV---GEAP 106 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----------cccceEEe---cCCH
Confidence 3468999976643 234444432 66655554 34455555555554443 23455554 4322
Q ss_pred -CccccCCCccEEEEcccccCCcCHH-HHHHHHHHhcCCCeEEEEEEEecC
Q 027594 137 -HIKAVAPPFDYIIGTDVVYAEHLLE-PLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 137 -~~~~~~~~fD~Vi~~d~~y~~~~~~-~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
.....-...|+++.. + ...+.. .+++.+. +.|.|.+++++...+
T Consensus 107 e~~~~~~~~iDF~vVD-c--~~~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 107 EEVMPGLKGIDFVVVD-C--KREDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred HHHHhhccCCCEEEEe-C--CchhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 111223568888753 3 223333 5555433 567888888765433
No 326
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.16 E-value=3.4 Score=35.35 Aligned_cols=41 Identities=32% Similarity=0.373 Sum_probs=28.6
Q ss_pred CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027594 62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 62 ~~~~~~vLelGc-G-~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~ 102 (221)
..+|.+||=.|+ | .|..++.+|+ +|++|++++. ++-.+.++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 346889999998 4 3777777765 5899988875 44444443
No 327
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.02 E-value=0.22 Score=35.34 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=29.3
Q ss_pred CccEEEEccccc------CCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 144 PFDYIIGTDVVY------AEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 144 ~fD~Vi~~d~~y------~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+||+|++-.+.= ..+-+..+++.+.++|+|||.+++-.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 489999877743 245688899999999999999988654
No 328
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=87.93 E-value=0.22 Score=35.90 Aligned_cols=83 Identities=27% Similarity=0.322 Sum_probs=51.3
Q ss_pred CccHHHHHHHH-hCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC---c-c-ccCCCcc
Q 027594 74 GCGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---I-K-AVAPPFD 146 (221)
Q Consensus 74 G~G~~~l~~a~-~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~---~-~-~~~~~fD 146 (221)
|.|+.++.+|+ .|++|+++|.. +-++.+++ .+. -. ..+..+.+. + . .....+|
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga--------------~~--~~~~~~~~~~~~i~~~~~~~~~d 60 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGA--------------DH--VIDYSDDDFVEQIRELTGGRGVD 60 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTE--------------SE--EEETTTSSHHHHHHHHTTTSSEE
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hcc--------------cc--cccccccccccccccccccccce
Confidence 56888888875 58999999974 45555553 221 01 123333211 1 1 1124799
Q ss_pred EEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 147 ~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+|+-+ ......+.....+++++|++.+...
T Consensus 61 ~vid~------~g~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 61 VVIDC------VGSGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp EEEES------SSSHHHHHHHHHHEEEEEEEEEESS
T ss_pred EEEEe------cCcHHHHHHHHHHhccCCEEEEEEc
Confidence 99854 2235778888899999999877543
No 329
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=87.82 E-value=1.6 Score=35.72 Aligned_cols=113 Identities=10% Similarity=0.054 Sum_probs=64.2
Q ss_pred eCCCccHHHHHHH--HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC-CCccccCCCcc
Q 027594 71 LGAGCGVAGFGMA--LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DHIKAVAPPFD 146 (221)
Q Consensus 71 lGcG~G~~~l~~a--~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~-~~~~~~~~~fD 146 (221)
+..-.|.+.++.. +..-+.++.|. +.-.+.++.|+... .++++...|=-.. .....+..+--
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--------------~~v~v~~~DG~~~l~allPP~~rRg 127 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD--------------RRVRVHHRDGYEGLKALLPPPERRG 127 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT--------------S-EEEE-S-HHHHHHHH-S-TTS-E
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC--------------CccEEEeCchhhhhhhhCCCCCCCe
Confidence 4445566666655 44557999997 77788888776652 3566665221000 00111233445
Q ss_pred EEEEcccccCCcCHHHHHHHHHHhcC--CCeEEEEEEEecChhHHHHHHHHHh
Q 027594 147 YIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVHEQMLQMWK 197 (221)
Q Consensus 147 ~Vi~~d~~y~~~~~~~l~~~~~~ll~--~~g~~~i~~~~r~~~~~~~~~~~~~ 197 (221)
+|+..+++-..++...++..+.+.++ +.|++.|-++.......+.|.+.++
T Consensus 128 lVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~ 180 (245)
T PF04378_consen 128 LVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALK 180 (245)
T ss_dssp EEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHH
Confidence 67766666668889999999999987 8999999999877766677776664
No 330
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.73 E-value=0.9 Score=38.54 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=31.6
Q ss_pred EEEeCCCccHHHHHHHHhCCEE-EEecc-hhhHHHHHHHH
Q 027594 68 VIELGAGCGVAGFGMALLGCNV-ITTDQ-IEVLPLLKRNV 105 (221)
Q Consensus 68 vLelGcG~G~~~l~~a~~ga~v-~~~D~-~~~l~~~~~n~ 105 (221)
|+||.||.|.+++.+.+.|.++ .+.|. +.+.+..+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence 6899999999999999999985 56898 45777777764
No 331
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=87.62 E-value=3.2 Score=35.02 Aligned_cols=40 Identities=35% Similarity=0.434 Sum_probs=27.4
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL 101 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~ 101 (221)
..+|.+||=+|+|. |..++.+|+ +|++ |+++|. ++-.+.+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~ 204 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELA 204 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 34688999999875 666666664 5888 999986 4444443
No 332
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=87.43 E-value=3.7 Score=32.88 Aligned_cols=94 Identities=28% Similarity=0.284 Sum_probs=52.9
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~- 138 (221)
.++.+||-.|+|+ |...+.+++ .|.+|++++. ++..+.++. .+. .. + ++.......
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~------------~~--~--~~~~~~~~~~ 192 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----LGA------------DH--V--IDYKEEDLEE 192 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCC------------ce--e--ccCCcCCHHH
Confidence 4678999999996 555554554 5888999986 344444432 111 00 0 111111100
Q ss_pred ---cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 ---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ---~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
......+|+++.+-. . ...+..+.+.++++|.++....
T Consensus 193 ~~~~~~~~~~d~vi~~~~--~----~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 193 ELRLTGGGGADVVIDAVG--G----PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred HHHHhcCCCCCEEEECCC--C----HHHHHHHHHhcccCCEEEEEcc
Confidence 112457999986421 1 1456666778889999876543
No 333
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.21 E-value=1.8 Score=33.49 Aligned_cols=104 Identities=21% Similarity=0.226 Sum_probs=54.8
Q ss_pred eEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCC-----CCCCceEEEEEEecCCCCc
Q 027594 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 67 ~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~v~~~~~dw~~~~~~ 138 (221)
+|-=+|+|+ | -++..++..|.+|++.|. ++.++.+++.++.+.........-+ ....++++.. . .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-----d--l 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTT-----D--L 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEES-----S--G
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccccc-----C--H
Confidence 356689987 5 467777788999999997 5677777776665221110000000 0012333221 1 1
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.... ..|+|+=+= .-..+.-..+++.+.+++.|+..+.-
T Consensus 74 ~~~~-~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilas 112 (180)
T PF02737_consen 74 EEAV-DADLVIEAI-PEDLELKQELFAELDEICPPDTILAS 112 (180)
T ss_dssp GGGC-TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE
T ss_pred HHHh-hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEe
Confidence 1122 678888542 12344456688888888877766443
No 334
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=87.05 E-value=11 Score=31.11 Aligned_cols=113 Identities=14% Similarity=0.078 Sum_probs=62.8
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCC--EEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 63 LKGKRVIELGAGCGVAGFGM----ALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~----a~~ga--~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..+...+|||+|+.-=+-.+ +..|. .++.+|++. .++...+.+..... .-.+.....|....
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-----------~l~v~~l~~~~~~~ 145 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-----------GLEVNALCGDYELA 145 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-----------CCeEeehhhhHHHH
Confidence 35789999999997544333 33443 588999854 55544444443321 11233333232221
Q ss_pred CCccccCCCccEEEEccccc--CCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 136 DHIKAVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 136 ~~~~~~~~~fD~Vi~~d~~y--~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
-.......+-=.++....+- .+.....++..+...++||-.+++....+.+
T Consensus 146 La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 146 LAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred HhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 11111111122233333333 3667788999999999999999997665553
No 335
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=86.82 E-value=14 Score=29.60 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=48.3
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+- +..+++.|++|++++. ++.++.+...++..+ .++.+..+|..+...
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~ 74 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG-------------GAAEALAFDIADEEA 74 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEccCCCHHH
Confidence 46789999999766542 2233456999999986 444544444444332 346677777766543
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ..-.+.|.|+.+...
T Consensus 75 ~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 75 VAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 21 112467999877543
No 336
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=86.59 E-value=8 Score=31.94 Aligned_cols=123 Identities=21% Similarity=0.245 Sum_probs=56.4
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCc--cH-HHHHHHHh----CCEEEEecchhhHHHHHHHHHHhhhccccCC
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC--GV-AGFGMALL----GCNVITTDQIEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~--G~-~~l~~a~~----ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
.|.+||.... .....++|||-||+|+ |. +|-...++ |+-++-.|+.+-+.
T Consensus 47 QLCqYln~~t------laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS----------------- 103 (299)
T PF06460_consen 47 QLCQYLNKTT------LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS----------------- 103 (299)
T ss_dssp HHHHHHTTS-----------TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B------------------
T ss_pred HHHHHhcccc------EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc-----------------
Confidence 4666774421 1233578999999998 63 55555443 55566666533111
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC-------------CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~-------------~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
..... .. ++.... ..+.+||+||+ |+ |. ..-..-+...++.-|+-||.+.+=...
T Consensus 104 -----Da~~~-~~---~Dc~t~-~~~~k~DlIiS-Dm-Yd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE 171 (299)
T PF06460_consen 104 -----DADQS-IV---GDCRTY-MPPDKFDLIIS-DM-YDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITE 171 (299)
T ss_dssp -----SSSEE-EE---S-GGGE-EESS-EEEEEE------TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-S
T ss_pred -----ccCCc-ee---cccccc-CCCCcccEEEE-ec-ccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeec
Confidence 01112 22 221111 23679999996 55 41 122445666667778889998875555
Q ss_pred cChhHHHHHHHHHhcCCeEEE
Q 027594 184 RSTSVHEQMLQMWKSNFNVKL 204 (221)
Q Consensus 184 r~~~~~~~~~~~~~~~f~v~~ 204 (221)
.+.. .++ ..+...|..++
T Consensus 172 ~Sw~--~~L-yel~~~F~~wt 189 (299)
T PF06460_consen 172 HSWN--AQL-YELMGYFSWWT 189 (299)
T ss_dssp SS----HHH-HHHHTTEEEEE
T ss_pred cccc--HHH-HHHHhhcccEE
Confidence 4432 333 33445555443
No 337
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.39 E-value=0.98 Score=37.20 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=38.9
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE 96 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~ 96 (221)
..|..|+...... .+..+.+|+.+.||-+|||++|-.+-+.|-+|++-|+..
T Consensus 8 ~~LlsFi~~~i~~--~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ 59 (330)
T COG3392 8 YKLLSFIKENIHE--VKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY 59 (330)
T ss_pred HHHHHHHHHHHHH--HhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence 3455565544211 113567889999999999999999999999999999743
No 338
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=86.26 E-value=5.3 Score=29.46 Aligned_cols=98 Identities=23% Similarity=0.231 Sum_probs=51.5
Q ss_pred EEEeCCCc-c-HHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCc
Q 027594 68 VIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (221)
Q Consensus 68 vLelGcG~-G-~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~f 145 (221)
|+=+|+|. | +++-.+++.|.+|++++-+.-++. +..+++...... ....+.... .+... .....+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~----~~~~g~~~~~~~----~~~~~~~~~-~~~~~---~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEA----IKEQGLTITGPD----GDETVQPPI-VISAP---SADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHH----HHHHCEEEEETT----EEEEEEEEE-EESSH---GHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHh----hhheeEEEEecc----cceeccccc-ccCcc---hhccCCC
Confidence 34567775 3 345555566889999986542222 333343211000 001111111 11111 1235789
Q ss_pred cEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 146 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 146 D~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
|+||.+- -....+..++.+...+++++.+++.
T Consensus 69 D~viv~v---Ka~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 69 DLVIVAV---KAYQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp SEEEE-S---SGGGHHHHHHHHCTGEETTEEEEEE
T ss_pred cEEEEEe---cccchHHHHHHHhhccCCCcEEEEE
Confidence 9999872 2334677888888999999776553
No 339
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=86.17 E-value=5.2 Score=31.69 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=22.5
Q ss_pred CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 157 EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 157 ~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
......+-..+.+.|||||.+++..+.
T Consensus 142 ~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 142 PATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 566788889999999999998886653
No 340
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=85.90 E-value=3.4 Score=35.46 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=24.5
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ 94 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~ 94 (221)
.+|.+||=.|+|. |..++.+|+ +|++|++++.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISS 215 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3677888899986 777777765 5889888774
No 341
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=85.87 E-value=1.7 Score=37.69 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.0
Q ss_pred CeEEEeCCCccHHHHHHH-HhCCEEEEecchh
Q 027594 66 KRVIELGAGCGVAGFGMA-LLGCNVITTDQIE 96 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a-~~ga~v~~~D~~~ 96 (221)
+.|+|+|+|.|.++-.++ ..|.+|.++|.+.
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 479999999999999887 4688999999764
No 342
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=85.80 E-value=1.4 Score=35.24 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCCeEEEeCCCccHHHHHHHH-hC---CEEEEecc-hhhHHHHHHHHHH
Q 027594 64 KGKRVIELGAGCGVAGFGMAL-LG---CNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~-~g---a~v~~~D~-~~~l~~~~~n~~~ 107 (221)
..-++-|=.||.|.+--.+.. ++ ..|+++|+ +++++++++|+..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 345899999999965444443 33 25999998 5699999999864
No 343
>PRK08339 short chain dehydrogenase; Provisional
Probab=85.41 E-value=3.3 Score=33.71 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=48.3
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+.+.+.... ..++.+...|..+...
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~~~ 72 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES------------NVDVSYIVADLTKRED 72 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHH
Confidence 3578899999987764 34445567999999986 344444444433221 1346677777766543
Q ss_pred cc------ccCCCccEEEEccc
Q 027594 138 IK------AVAPPFDYIIGTDV 153 (221)
Q Consensus 138 ~~------~~~~~fD~Vi~~d~ 153 (221)
.. ....+.|+++.+--
T Consensus 73 i~~~~~~~~~~g~iD~lv~nag 94 (263)
T PRK08339 73 LERTVKELKNIGEPDIFFFSTG 94 (263)
T ss_pred HHHHHHHHHhhCCCcEEEECCC
Confidence 21 01246898887643
No 344
>PRK05867 short chain dehydrogenase; Provisional
Probab=85.33 E-value=3.7 Score=33.05 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=47.8
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|++++. ++.++.+...+...+ .++.....|..+....
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~D~~~~~~~ 73 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-------------GKVVPVCCDVSQHQQV 73 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CeEEEEEccCCCHHHH
Confidence 578899999987664 33344567999999986 344444443333221 3456666666554332
Q ss_pred c-------ccCCCccEEEEccccc
Q 027594 139 K-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~y 155 (221)
. ....+.|+++.+.-+.
T Consensus 74 ~~~~~~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 74 TSMLDQVTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCC
Confidence 1 1124789998875543
No 345
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.06 E-value=1.8 Score=37.55 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=24.1
Q ss_pred CCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc
Q 027594 63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ 94 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a-~~ga~v~~~D~ 94 (221)
.++.+|+=+|+|. |..++..+ .+|++|+++|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~ 198 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDI 198 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEEC
Confidence 3567899999985 66666554 46999999996
No 346
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.83 E-value=6 Score=31.45 Aligned_cols=80 Identities=23% Similarity=0.259 Sum_probs=46.6
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~----a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+++||=.|++ |.+|..+ ++.|++|++++. ++.+..+...+...+ .++.+...|+.+...
T Consensus 4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dl~~~~~ 69 (251)
T PRK12826 4 LEGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-------------GKARARQVDVRDRAA 69 (251)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEECCCCCHHH
Confidence 467899988875 4444443 456889999885 333333333333222 346777777766533
Q ss_pred ccc-------cCCCccEEEEcccccC
Q 027594 138 IKA-------VAPPFDYIIGTDVVYA 156 (221)
Q Consensus 138 ~~~-------~~~~fD~Vi~~d~~y~ 156 (221)
... ...++|+|+.+...+.
T Consensus 70 ~~~~~~~~~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 70 LKAAVAAGVEDFGRLDILVANAGIFP 95 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 211 1136899988765443
No 347
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.77 E-value=5.7 Score=33.38 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=49.7
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.+.+++++|=.|++.|+ ++..+++.|++|++++. .+..+.+...+..... ..++.+..+|..+..
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-----------~~~v~~~~~Dl~d~~ 78 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP-----------DAKLSLRALDLSSLA 78 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCceEEEEecCCCHH
Confidence 34678999999987764 33344567999988875 3333333333332211 235777787876654
Q ss_pred Ccc-------ccCCCccEEEEcccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~ 154 (221)
... ....+.|++|.+--+
T Consensus 79 sv~~~~~~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 79 SVAALGEQLRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHHHHHHHHHhCCCccEEEECCcc
Confidence 321 123568999877543
No 348
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=84.76 E-value=3 Score=35.40 Aligned_cols=40 Identities=40% Similarity=0.559 Sum_probs=27.8
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL 101 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~ 101 (221)
..++.+||=+|||+ |..++.+|+ +|++ |+++|. ++-.+.+
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 201 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALA 201 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 34678999999876 777766664 5887 788885 4444444
No 349
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.70 E-value=6.7 Score=31.76 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=24.7
Q ss_pred CCCCeEEEeCCCc-cH-HHHHHHHhCC-EEEEecch
Q 027594 63 LKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQI 95 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~-~~l~~a~~ga-~v~~~D~~ 95 (221)
+++.+||=+|||. |. .+..+++.|. +++.+|.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4668999999995 54 5556677786 69999853
No 350
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.67 E-value=10 Score=31.43 Aligned_cols=41 Identities=34% Similarity=0.405 Sum_probs=29.3
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHH
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVE 106 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~ 106 (221)
++|.=||+|+ | .++..++..|.+|++.|. ++.++.++.++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 3677889986 4 345556677889999997 557777766554
No 351
>PRK06139 short chain dehydrogenase; Provisional
Probab=84.67 E-value=3.6 Score=35.07 Aligned_cols=79 Identities=20% Similarity=0.264 Sum_probs=49.7
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++++||=.|++.|+ ++..+++.|++|++++. ++.++.+.+.+...+ .++.+...|..+.+..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~d~~~v 71 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG-------------AEVLVVPTDVTDADQV 71 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHHH
Confidence 467899999986654 33345567999999886 445555555554432 3466677777665432
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....++|++|.+--+
T Consensus 72 ~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 72 KALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 1 112578999887543
No 352
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=84.23 E-value=18 Score=29.89 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
+..+.++.+|-=|...|+ .+..+++.|++|+.++. ++.++.+..-+...+.. ..++.....|..+.
T Consensus 3 ~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Dv~~~ 72 (270)
T KOG0725|consen 3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYT----------GGKVLAIVCDVSKE 72 (270)
T ss_pred CccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC----------CCeeEEEECcCCCH
Confidence 356789999999988874 56677889999999996 55666665555443321 24566666666544
Q ss_pred CCc--------cccCCCccEEEEccccc
Q 027594 136 DHI--------KAVAPPFDYIIGTDVVY 155 (221)
Q Consensus 136 ~~~--------~~~~~~fD~Vi~~d~~y 155 (221)
+.. .....+.|+++.|.-.-
T Consensus 73 ~~~~~l~~~~~~~~~GkidiLvnnag~~ 100 (270)
T KOG0725|consen 73 VDVEKLVEFAVEKFFGKIDILVNNAGAL 100 (270)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCcC
Confidence 321 11146789998775443
No 353
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=84.15 E-value=3.4 Score=31.30 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=55.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..+.|++||=+|.=.-.+...+...+.+|++...........+ .. .++.+. .+. ..+
T Consensus 9 ~~f~~k~vL~~g~~~D~~~~~L~~~~~~v~~~~~~~~~~~~~~---~~--------------~~~~~~---f~~--~~~- 65 (155)
T PF08468_consen 9 DLFEGKSVLFAGDPQDDLPAQLPAIAVSVHVFSYHHWYALQKQ---AQ--------------SNVQFH---FGA--ELP- 65 (155)
T ss_dssp HHHTT-EEEEEE---SSHHHHS--SEEEEEESBHHHHHHHHHH---HG--------------GGEEE----SS----HH-
T ss_pred HHHCCCeEEEEcCCchhhHHHhhhcCCEEEEEEchHHHHHhHh---cc--------------cCceEe---eec--cCC-
Confidence 5678889999886655555555555556666553221111111 11 123322 111 111
Q ss_pred cCCCccEEEEcccccCCcC---HHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEe
Q 027594 141 VAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV 205 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~---~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v 205 (221)
....||.||. |.+.. ..-++..+...|++|+.++++..+|..- +...++++..-.+..+
T Consensus 66 ~~~~~D~vvl----y~PKaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~GI--kSa~K~L~~~~~~~Ki 127 (155)
T PF08468_consen 66 ADQDFDTVVL----YWPKAKAEAQYLLANLLSHLPPGTEIFVVGENKGGI--KSAEKQLAPYGKINKI 127 (155)
T ss_dssp HHTT-SEEEE----E--SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGGTG--GGHHHHHTTTS--EEE
T ss_pred cccCCCEEEE----EccCcHHHHHHHHHHHHHhCCCCCEEEEEecCcccH--HHHHHHHHhhCCccee
Confidence 1357999985 66554 4446677777789999999999988752 3333444433344433
No 354
>PRK07063 short chain dehydrogenase; Provisional
Probab=84.09 E-value=3.5 Score=33.29 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=48.4
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++++|=.|++.|+ ++..+++.|++|++++. ++.++.+...+..... ..++.+...|..+....
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~~ 73 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVA-----------GARVLAVPADVTDAASV 73 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC-----------CceEEEEEccCCCHHHH
Confidence 467899999987654 33344567999999986 4444444444433111 23566777777665432
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....+.|+++.+.-+
T Consensus 74 ~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 74 AAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHHHHHHhCCCcEEEECCCc
Confidence 1 112468999877543
No 355
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=83.99 E-value=13 Score=29.36 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=26.3
Q ss_pred CCCCCeEEEeCCCc-c-HHHHHHHHhCC-EEEEecch
Q 027594 62 KLKGKRVIELGAGC-G-VAGFGMALLGC-NVITTDQI 95 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G-~~~l~~a~~ga-~v~~~D~~ 95 (221)
..+.++|+=+|||. | .++..+++.|. +++..|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34678999999996 5 46667788887 59999854
No 356
>PRK07109 short chain dehydrogenase; Provisional
Probab=83.67 E-value=15 Score=31.14 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=48.9
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++++||=.|++.|+- +..+++.|++|++++. ++.++.+.+.+...+ .++.+...|..+...
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g-------------~~~~~v~~Dv~d~~~ 71 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG-------------GEALAVVADVADAEA 71 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------------CcEEEEEecCCCHHH
Confidence 35678999999766542 3334567999999886 445555554444322 356667777766543
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ..-.+.|++|.+--.
T Consensus 72 v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 72 VQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCc
Confidence 21 112478999877543
No 357
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=83.61 E-value=3.6 Score=33.22 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=46.0
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++++||=.|++.|+- +..+++.|++|++++..+..+.+.+.+... ..++.+...|..+....
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i 78 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKE-------------GRKVTFVQVDLTKPESA 78 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence 45789999999987643 333456799988887543233333322221 13466677776654432
Q ss_pred c-------ccCCCccEEEEccc
Q 027594 139 K-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~ 153 (221)
. ....+.|+++.+.-
T Consensus 79 ~~~~~~~~~~~g~id~li~~ag 100 (258)
T PRK06935 79 EKVVKEALEEFGKIDILVNNAG 100 (258)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 11246799887654
No 358
>PRK06701 short chain dehydrogenase; Provisional
Probab=83.54 E-value=8.6 Score=31.87 Aligned_cols=79 Identities=22% Similarity=0.168 Sum_probs=45.0
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch--hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI--EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~--~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+++++|=.|++.|+ ++..+++.|++|++++.. ..++.....++.. ..++.+...|..+..
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~ 109 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE-------------GVKCLLIPGDVSDEA 109 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc-------------CCeEEEEEccCCCHH
Confidence 4568899999987654 333445679999888752 2233332222221 134666777766543
Q ss_pred Ccc-------ccCCCccEEEEccc
Q 027594 137 HIK-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~ 153 (221)
... ....+.|+||.+-.
T Consensus 110 ~~~~~~~~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 110 FCKDAVEETVRELGRLDILVNNAA 133 (290)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCc
Confidence 321 11246798886644
No 359
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.52 E-value=4.9 Score=33.56 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=55.7
Q ss_pred eEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC-----CCCceEEEEEEecCCCCc
Q 027594 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-----LLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 67 ~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-----~~~~v~~~~~dw~~~~~~ 138 (221)
+|-=||+|+ | -++..++..|.+|+..|. ++.++.++..+..+.........-+. ...++++.. + .
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~-~------~ 79 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT-D------L 79 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC-C------H
Confidence 788899997 4 456667788999999997 66777766665543211100000000 011222211 1 1
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhc-CCCeEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTI 177 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll-~~~g~~ 177 (221)
. .-...|+|+-+ +.-..+.-..++..+.+++ +|+..+
T Consensus 80 ~-~~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il 117 (286)
T PRK07819 80 G-DFADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVL 117 (286)
T ss_pred H-HhCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEE
Confidence 1 12467888865 2233444556777777777 566554
No 360
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.15 E-value=4.5 Score=34.32 Aligned_cols=97 Identities=16% Similarity=0.069 Sum_probs=50.6
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+||=.|+|. |...+.+|+ +|+ .|+.+|. ++-.+.+++ .+.. ..+.....++.....
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~-----------~~v~~~~~~~~~~i~ 228 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT-----------DIVDYKNGDVVEQIL 228 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc-----------eEecCCCCCHHHHHH
Confidence 34678999998875 666666664 477 4888886 434444442 1110 001100000000000
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.......+|+|+-+ .- ....+....++++++|+++.
T Consensus 229 ~~~~~~~~d~vld~--~g----~~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 229 KLTGGKGVDAVIIA--GG----GQDTFEQALKVLKPGGTISN 264 (351)
T ss_pred HHhCCCCCcEEEEC--CC----CHHHHHHHHHHhhcCCEEEE
Confidence 00123468988843 22 13456777788888888764
No 361
>PRK08862 short chain dehydrogenase; Provisional
Probab=83.15 E-value=5.1 Score=31.99 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=46.7
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|++++. .+.++.+.+.+...+ .++....+|..+.+..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~-------------~~~~~~~~D~~~~~~~ 69 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT-------------DNVYSFQLKDFSQESI 69 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CCeEEEEccCCCHHHH
Confidence 467899999999886 45556677999999885 445544444443322 2344445555443322
Q ss_pred c-------ccCC-CccEEEEcc
Q 027594 139 K-------AVAP-PFDYIIGTD 152 (221)
Q Consensus 139 ~-------~~~~-~fD~Vi~~d 152 (221)
. ..-. +.|+++.+-
T Consensus 70 ~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 70 RHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHHHHHHHhCCCCCEEEECC
Confidence 1 1113 789988875
No 362
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=83.10 E-value=4.3 Score=38.54 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=60.2
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC-----CCCceEEEEEEecCCCC
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-----LLGSIQAVELDWGNEDH 137 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-----~~~~v~~~~~dw~~~~~ 137 (221)
++|-=||+|+ | -++..+|..|.+|++.|. ++.++.++..+..+.........-+. .-.+++... ++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~----- 387 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SY----- 387 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH-----
Confidence 4788999998 4 466777888999999997 56777776666543211100000000 011233221 11
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
. .-...|+||=+ +.-..+.-..+++.+.++++|+.++
T Consensus 388 -~-~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~il 424 (714)
T TIGR02437 388 -A-GFDNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAIL 424 (714)
T ss_pred -H-HhcCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEE
Confidence 1 12467888854 3344556667888888888877654
No 363
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=82.90 E-value=6.3 Score=31.76 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=47.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a----~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+++++|=.|+ +|.+|..++ +.|++|+.++. .+-++.+...+...+ .++.+...|..+.+
T Consensus 9 ~~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-------------~~~~~~~~Dl~d~~ 74 (259)
T PRK08213 9 DLSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG-------------IDALWIAADVADEA 74 (259)
T ss_pred CcCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEEccCCCHH
Confidence 457889999995 444555544 45889999886 334444443333221 34666777776654
Q ss_pred Ccc-------ccCCCccEEEEcccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~ 154 (221)
... ....+.|.|+.+...
T Consensus 75 ~i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 75 DIERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 331 112468999887543
No 364
>PRK07326 short chain dehydrogenase; Provisional
Probab=82.85 E-value=12 Score=29.52 Aligned_cols=76 Identities=22% Similarity=0.285 Sum_probs=42.3
Q ss_pred CCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~----a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++||=.|+ +|.+|..+ +..|++|++++. ++..+.+...+... ..+.+...|..+....
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~D~~~~~~~ 69 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--------------GNVLGLAADVRDEADV 69 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--------------CcEEEEEccCCCHHHH
Confidence 5678999996 44444444 345889999985 43333333322211 2456666666554322
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....++|+|+.+.-.
T Consensus 70 ~~~~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 70 QRAVDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 1 012368999876543
No 365
>PRK06949 short chain dehydrogenase; Provisional
Probab=82.49 E-value=5.1 Score=32.12 Aligned_cols=79 Identities=29% Similarity=0.414 Sum_probs=45.9
Q ss_pred CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~----~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...++++|=.|++.| +|.. +++.|++|++++. ++.++.+...+... ..++.+...|..+.+
T Consensus 6 ~~~~k~ilItGasg~-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 71 (258)
T PRK06949 6 NLEGKVALVTGASSG-LGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-------------GGAAHVVSLDVTDYQ 71 (258)
T ss_pred CCCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHH
Confidence 457889999995443 4433 3456889999885 44444444433322 134667777766543
Q ss_pred Ccc-------ccCCCccEEEEcccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~ 154 (221)
... ....+.|+|+.+...
T Consensus 72 ~~~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 72 SIKAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 221 112467998887553
No 366
>PRK10458 DNA cytosine methylase; Provisional
Probab=82.39 E-value=3.4 Score=37.08 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=33.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHH
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV 105 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~ 105 (221)
...+++||-||.|-+++.+-..|.+ |.++|. +.+.+.-+.|.
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 3569999999999999999888988 456788 44777777664
No 367
>PRK07806 short chain dehydrogenase; Provisional
Probab=82.37 E-value=18 Score=28.66 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=52.8
Q ss_pred CCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-h-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~----~a~~ga~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
+.++++|=.|+..| +|.. ++..|++|++++. . ...+.+...+... ..++.+...|..+.+
T Consensus 4 ~~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 69 (248)
T PRK07806 4 LPGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA-------------GGRASAVGADLTDEE 69 (248)
T ss_pred CCCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc-------------CCceEEEEcCCCCHH
Confidence 46789999997544 3333 3456889888764 2 2333333222221 134566666766544
Q ss_pred Ccc-------ccCCCccEEEEcccccCC-------------cCHHHHHHHHHHhcCCCeEEEE
Q 027594 137 HIK-------AVAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y~~-------------~~~~~l~~~~~~ll~~~g~~~i 179 (221)
... ......|+|+.+-..... .....+++.+.+.++.+|.+++
T Consensus 70 ~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~ 132 (248)
T PRK07806 70 SVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF 132 (248)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence 321 111357887765432110 0123455666665555555443
No 368
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.28 E-value=14 Score=30.51 Aligned_cols=95 Identities=28% Similarity=0.370 Sum_probs=52.6
Q ss_pred eEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 67 ~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
+|+=+|+|. | .++..+++.|.+|++++. ++.++.+++ ++.... ...... .. ........ ..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~--------~~~~~~-~~--~~~~~~~~-~~ 65 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLE--------DGEITV-PV--LAADDPAE-LG 65 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCccc--------CCceee-cc--cCCCChhH-cC
Confidence 578899986 3 456666777889999986 444443332 232110 011110 00 00111111 26
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
++|+|+.+=.-+ ....++..+...+.++..++..
T Consensus 66 ~~d~vila~k~~---~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 66 PQDLVILAVKAY---QLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred CCCEEEEecccc---cHHHHHHHHhhhcCCCCEEEEe
Confidence 799998774433 4677888888888777665543
No 369
>PRK09242 tropinone reductase; Provisional
Probab=82.04 E-value=7.1 Score=31.38 Aligned_cols=82 Identities=12% Similarity=0.211 Sum_probs=48.2
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|++++. ++.++.+..++..... ..++.+...|..+...
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~~~~~ 74 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP-----------EREVHGLAADVSDDED 74 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC-----------CCeEEEEECCCCCHHH
Confidence 4578999999986654 33334556999999985 4444444444433210 2356666766655432
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+|+.+.-.
T Consensus 75 ~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 75 RRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 11 112468998877543
No 370
>PRK06125 short chain dehydrogenase; Provisional
Probab=82.01 E-value=7.9 Score=31.21 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=47.2
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..++..|++|++++. ++.++.+...+.... ..++.+...|..+....
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~D~~~~~~~ 72 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH------------GVDVAVHALDLSSPEAR 72 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHHH
Confidence 467899999986653 23334567999999986 444444444443321 13466667776554332
Q ss_pred c---ccCCCccEEEEcccc
Q 027594 139 K---AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~---~~~~~fD~Vi~~d~~ 154 (221)
. ....+.|+++.+...
T Consensus 73 ~~~~~~~g~id~lv~~ag~ 91 (259)
T PRK06125 73 EQLAAEAGDIDILVNNAGA 91 (259)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 1 112468998887543
No 371
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=81.66 E-value=5.7 Score=34.44 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=24.4
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc
Q 027594 64 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ 94 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~ 94 (221)
++.+||=.|+|. |..++.+|+ +|++|++++.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~ 210 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISR 210 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeC
Confidence 678999999886 777777665 5899888875
No 372
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=81.59 E-value=9.8 Score=29.51 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=23.8
Q ss_pred CCCCCCeEEEeCC-Cc-cH-HHHHHHHhCCEEEEecc
Q 027594 61 SKLKGKRVIELGA-GC-GV-AGFGMALLGCNVITTDQ 94 (221)
Q Consensus 61 ~~~~~~~vLelGc-G~-G~-~~l~~a~~ga~v~~~D~ 94 (221)
..++++++|=+|+ |. |. .+..+++.|++|+.++.
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R 60 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGR 60 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 3567899999996 53 53 34445567889988875
No 373
>PRK07062 short chain dehydrogenase; Provisional
Probab=81.57 E-value=11 Score=30.35 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=48.9
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+++++|=.|++.|+ ++..++..|++|++++. ++.++.+...+..... ..++.+...|..+.+.
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~ 73 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP-----------GARLLAARCDVLDEAD 73 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC-----------CceEEEEEecCCCHHH
Confidence 4578999999987764 33344567999999986 4444444433332210 1356667777766543
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+-.+
T Consensus 74 v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 74 VAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 21 112468998877544
No 374
>PRK08589 short chain dehydrogenase; Validated
Probab=81.35 E-value=8.9 Score=31.30 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=47.3
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++++|=.|++.|+ ++..+++.|++|++++.++.++.+...+... ..++.+..+|..+.....
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~ 70 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSN-------------GGKAKAYHVDISDEQQVK 70 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhc-------------CCeEEEEEeecCCHHHHH
Confidence 467899999987764 3334556799999988644333333333222 134667777776653321
Q ss_pred -------ccCCCccEEEEcccc
Q 027594 140 -------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 140 -------~~~~~fD~Vi~~d~~ 154 (221)
....+.|+++.+--+
T Consensus 71 ~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 71 DFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHHHcCCcCEEEECCCC
Confidence 112468999887544
No 375
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=81.16 E-value=8.7 Score=32.88 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ 94 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~ 94 (221)
.+|.+||=.|+|. |...+.+|+ +|+++++++.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~ 212 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISS 212 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeC
Confidence 3678898888875 777666665 4888777764
No 376
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=81.15 E-value=4 Score=33.69 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=25.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC-------CEEEEecc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG-------CNVITTDQ 94 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g-------a~v~~~D~ 94 (221)
.++..++|+|||.|.+|-.++..- ..++++|-
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 355689999999999999988642 36889995
No 377
>PRK08265 short chain dehydrogenase; Provisional
Probab=81.14 E-value=19 Score=29.07 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=44.9
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++++|=.|+..|+ ++..+++.|++|+++|.+ +.++.+.+ ..+ .++.+...|+.+.+..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~-------------~~~~~~~~Dl~~~~~~ 67 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA---SLG-------------ERARFIATDITDDAAI 67 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC-------------CeeEEEEecCCCHHHH
Confidence 467899999976553 333445679999999863 32222221 111 2466777777765432
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....+.|+++.+-..
T Consensus 68 ~~~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 68 ERAVATVVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 112468999877544
No 378
>PRK08324 short chain dehydrogenase; Validated
Probab=80.94 E-value=12 Score=35.36 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=45.1
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+|++||=.|++.|+ ++..++..|++|+++|. ++.++.+...+.. ...+.+...|..+...
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~--------------~~~v~~v~~Dvtd~~~ 484 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG--------------PDRALGVACDVTDEAA 484 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc--------------cCcEEEEEecCCCHHH
Confidence 4567899999975442 22334456999999996 3333333322211 1245666766655432
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....++|+|+.+-.+.
T Consensus 485 v~~~~~~~~~~~g~iDvvI~~AG~~ 509 (681)
T PRK08324 485 VQAAFEEAALAFGGVDIVVSNAGIA 509 (681)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 21 1124689998875543
No 379
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=80.86 E-value=6.8 Score=30.81 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCCCeEEEeCCCc-cH-HHHHHHHhCC-EEEEecc
Q 027594 63 LKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQ 94 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~-~~l~~a~~ga-~v~~~D~ 94 (221)
.++.+||=+|||. |. ++..++..|. +++.+|.
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~ 53 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDD 53 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 4668999999996 32 3445566676 4888885
No 380
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=80.86 E-value=5.4 Score=32.53 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=25.9
Q ss_pred CCeEEEeCCCccHHHHHHHHh----------CCEEEEecchh-hHHHHHHHH
Q 027594 65 GKRVIELGAGCGVAGFGMALL----------GCNVITTDQIE-VLPLLKRNV 105 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~----------ga~v~~~D~~~-~l~~~~~n~ 105 (221)
..+|+|+|+|+|.++.-+... ..+++.+|.+. +.+.-++++
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L 70 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERL 70 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHh
Confidence 369999999999888766542 13699999854 444444443
No 381
>PRK06172 short chain dehydrogenase; Provisional
Probab=80.60 E-value=4 Score=32.75 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=47.1
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+- +..+++.|++|++++. ++-++.+...+... ..++.+...|..+....
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i 71 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA-------------GGEALFVACDVTRDAEV 71 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence 4678999999866542 2234556899999986 44444444444332 13567777777654332
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....+.|+|+.+...
T Consensus 72 ~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 72 KALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 112467999877543
No 382
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=80.59 E-value=13 Score=30.86 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=45.0
Q ss_pred cchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHH
Q 027594 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLP 99 (221)
Q Consensus 39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~ 99 (221)
-++++.|-+.+...+.....+....+|+...|||+-.|-.+-.+-+.+..|+++|...|.+
T Consensus 186 SRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~ 246 (358)
T COG2933 186 SRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQ 246 (358)
T ss_pred chhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcceEEEEeccchhhh
Confidence 3467777776665543333333456889999999999999999999999999999644433
No 383
>PRK05866 short chain dehydrogenase; Provisional
Probab=80.49 E-value=5.7 Score=33.02 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=46.7
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+.++++|=.|++.|+ ++..+++.|++|++++. .+.++.+...+...+ ..+.+...|..+...
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~-------------~~~~~~~~Dl~d~~~ 103 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG-------------GDAMAVPCDLSDLDA 103 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHH
Confidence 4567899999986654 23334556899999986 444444443332211 245666766665432
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+--.
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 21 112468999887543
No 384
>PRK08703 short chain dehydrogenase; Provisional
Probab=80.43 E-value=14 Score=29.35 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=26.5
Q ss_pred CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHH
Q 027594 62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRN 104 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~----~a~~ga~v~~~D~-~~~l~~~~~n 104 (221)
.++++++|=.||+.| +|.. +++.|++|++++. ++.++.+...
T Consensus 3 ~l~~k~vlItG~sgg-iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~ 49 (239)
T PRK08703 3 TLSDKTILVTGASQG-LGEQVAKAYAAAGATVILVARHQKKLEKVYDA 49 (239)
T ss_pred CCCCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCChHHHHHHHHH
Confidence 356789999997544 4433 3456899999986 4444433333
No 385
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=80.24 E-value=8.7 Score=31.09 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=49.7
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+++++|=.|++.|+- +..++..|++|+.++. ++.++.+..++...+ .++.+..+|..+...
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~ 73 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG-------------IEAHGYVCDVTDEDG 73 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEcCCCCHHH
Confidence 45788999999887643 3345567999988885 444444444443321 346677777765543
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+-.+.
T Consensus 74 ~~~~~~~~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 74 VQAMVSQIEKEVGVIDILVNNAGII 98 (265)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCC
Confidence 21 1124689998876543
No 386
>PRK05876 short chain dehydrogenase; Provisional
Probab=80.21 E-value=8 Score=31.76 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=46.7
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|+++|. .+.++.+...+...+ .++.+...|..+....
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~v 70 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG-------------FDVHGVMCDVRHREEV 70 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEeCCCCCHHHH
Confidence 578899999987764 33344567999999986 334443333332221 2466667676654432
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....+.|+++.+.-+
T Consensus 71 ~~~~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 71 THLADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 1 112467998887543
No 387
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.09 E-value=6.4 Score=37.37 Aligned_cols=103 Identities=21% Similarity=0.203 Sum_probs=57.7
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC-----CCCceEEEEEEecCCCC
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-----LLGSIQAVELDWGNEDH 137 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-----~~~~v~~~~~dw~~~~~ 137 (221)
++|-=||+|+ | -++..+|..|.+|++.|. ++.++.++..++.+.........-+. ...++++.. +. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~---~- 388 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTL-DY---A- 388 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH---H-
Confidence 4799999998 4 467777888999999997 55777766665543211000000000 012233221 11 1
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
.-...|+||=+ +.-..+.-..+++.+.++++|+..+
T Consensus 389 ---~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~il 424 (715)
T PRK11730 389 ---GFERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTIL 424 (715)
T ss_pred ---HhcCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEE
Confidence 12457777754 2233455566777777777766543
No 388
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=80.07 E-value=11 Score=31.26 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCCCCeEEEeCCCc-cH-HHHHHHHhC-CEEEEecch
Q 027594 62 KLKGKRVIELGAGC-GV-AGFGMALLG-CNVITTDQI 95 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~-~~l~~a~~g-a~v~~~D~~ 95 (221)
.+++.+|+=+|||. |. .+..+++.| .+++.+|.+
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45778999999995 54 555667788 579998853
No 389
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=80.03 E-value=6.9 Score=31.50 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=45.5
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++++++|=.|++.|+ ++..+++.|++|+++|..+....+...+... ..++.+...|..+....
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~ 71 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAA-------------GGEALALTADLETYAGA 71 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhc-------------CCeEEEEEEeCCCHHHH
Confidence 4578899999987654 3334456799999998643232222322221 13466667777654322
Q ss_pred c-------ccCCCccEEEEcc
Q 027594 139 K-------AVAPPFDYIIGTD 152 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d 152 (221)
. ......|+++.+-
T Consensus 72 ~~~~~~~~~~~~~id~lv~nA 92 (260)
T PRK12823 72 QAAMAAAVEAFGRIDVLINNV 92 (260)
T ss_pred HHHHHHHHHHcCCCeEEEECC
Confidence 1 1124689988764
No 390
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=79.74 E-value=8.9 Score=32.64 Aligned_cols=96 Identities=20% Similarity=0.280 Sum_probs=59.3
Q ss_pred CCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a-~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
...+|.=||-|. |.-+.-.| -+|++||..|.+ +-++++.. .. ..++.... .....+..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd---~f-------------~~rv~~~~---st~~~iee 227 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD---LF-------------GGRVHTLY---STPSNIEE 227 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH---hh-------------CceeEEEE---cCHHHHHH
Confidence 345788898886 65544443 468999999973 33333322 11 13444443 33333333
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
.-.+.|+||..=.+-......-..+...+.++||+.++
T Consensus 228 ~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 228 AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 34689999987666666666666677788899988866
No 391
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=79.72 E-value=12 Score=29.92 Aligned_cols=45 Identities=29% Similarity=0.350 Sum_probs=28.6
Q ss_pred CCCCCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHH
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNV 105 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~----a~~ga~v~~~D~-~~~l~~~~~n~ 105 (221)
....++++||=.|+. |.+|..+ ++.|++|+++|. ++.++.+...+
T Consensus 7 ~~~~~~k~vlItG~~-g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 7 PDLLKDRIILVTGAG-DGIGREAALTYARHGATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred ccccCCCEEEEeCCC-chHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Confidence 345688999999964 4444443 445889999986 44444444333
No 392
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=79.70 E-value=10 Score=31.51 Aligned_cols=95 Identities=18% Similarity=0.142 Sum_probs=51.1
Q ss_pred CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCc-eEEEEEEecCCC
Q 027594 62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS-IQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGc-G-~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~-v~~~~~dw~~~~ 136 (221)
..+|.+||=.|+ | .|..++.+|+ +|++|++++. ++-.+.+++ .+. +. +.....+|....
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga------------~~vi~~~~~~~~~~v 204 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGF------------DAVFNYKTVSLEEAL 204 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC------------CEEEeCCCccHHHHH
Confidence 346789998884 3 3667666664 5889888875 444444443 121 01 111111111000
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.......+|+|+- ++- ...+....++++++|+++..
T Consensus 205 -~~~~~~gvd~vld--~~g-----~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 205 -KEAAPDGIDCYFD--NVG-----GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred -HHHCCCCcEEEEE--CCC-----HHHHHHHHHhhccCCEEEEE
Confidence 0011246888883 322 14456677788999987653
No 393
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=79.59 E-value=15 Score=32.64 Aligned_cols=106 Identities=19% Similarity=0.199 Sum_probs=64.3
Q ss_pred CeEEEeC-CCcc------HHHHHHHHhCCE--EEEec-c-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecC
Q 027594 66 KRVIELG-AGCG------VAGFGMALLGCN--VITTD-Q-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 134 (221)
Q Consensus 66 ~~vLelG-cG~G------~~~l~~a~~ga~--v~~~D-~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~ 134 (221)
..||=+| =|+| =++.++.+.|.+ ++++| + |-++++++...++.+. .+...+-+.
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v---------------~~f~~~~~~ 165 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV---------------PFFGSGTEK 165 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC---------------ceecCCCCC
Confidence 3577776 2334 455556666777 68889 4 6699999998887664 222211011
Q ss_pred CCC-c------cccCCCccEEEEcccccCCcCHHHHHHHH---HHhcCCCeEEEEEEEecChh
Q 027594 135 EDH-I------KAVAPPFDYIIGTDVVYAEHLLEPLLQTI---FALSGPKTTILLGYEIRSTS 187 (221)
Q Consensus 135 ~~~-~------~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~---~~ll~~~g~~~i~~~~r~~~ 187 (221)
.+. . ......||+||. |+.-....-+.|+.++ ...++|.-++++++..-..+
T Consensus 166 ~Pv~Iak~al~~ak~~~~DvvIv-DTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 166 DPVEIAKAALEKAKEEGYDVVIV-DTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEE-eCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence 000 0 122457899996 5544434445555554 55689999999988765544
No 394
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=79.59 E-value=9 Score=33.12 Aligned_cols=60 Identities=10% Similarity=0.136 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh----------CCEEEEecchhhHHHHHHHH
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL----------GCNVITTDQIEVLPLLKRNV 105 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~----------ga~v~~~D~~~~l~~~~~n~ 105 (221)
+..++.|+.+.... ......-.++|||+|+|.++--+.+. ..++..++.+.-+...+++.
T Consensus 59 Gella~~~~~~wq~----~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 59 GELLAEQFLQLWQE----LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred HHHHHHHHHHHHHH----hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 34566666654311 01122347999999999877655431 35788999765454444433
No 395
>PRK07814 short chain dehydrogenase; Provisional
Probab=79.57 E-value=23 Score=28.57 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=45.5
Q ss_pred CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~----~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+++++|=.|++.| +|.. ++..|++|++++. ++.++.+.+.+... ..++.+...|..+..
T Consensus 7 ~~~~~~vlItGasgg-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 72 (263)
T PRK07814 7 RLDDQVAVVTGAGRG-LGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA-------------GRRAHVVAADLAHPE 72 (263)
T ss_pred cCCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHH
Confidence 357889999997544 4443 3456899999986 44444443333221 134666677766554
Q ss_pred Ccc-------ccCCCccEEEEccc
Q 027594 137 HIK-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~ 153 (221)
... ..-.++|+|+.+-.
T Consensus 73 ~~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 73 ATAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 321 01246899987643
No 396
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.47 E-value=15 Score=32.93 Aligned_cols=48 Identities=27% Similarity=0.286 Sum_probs=30.3
Q ss_pred CCCCCeEEEeCCCc-cHH-HHHHHHhCCEEEEecc-hh-hHHHHHHHHHHhh
Q 027594 62 KLKGKRVIELGAGC-GVA-GFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNT 109 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~-~l~~a~~ga~v~~~D~-~~-~l~~~~~n~~~n~ 109 (221)
..++++|+=+|+|. |+. +..++++|.+|+++|. +. ......+.++..+
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~g 64 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALG 64 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcC
Confidence 45678999999985 653 3344567999999995 32 3333334444444
No 397
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=79.24 E-value=14 Score=30.74 Aligned_cols=97 Identities=21% Similarity=0.183 Sum_probs=51.0
Q ss_pred eEEEeCCCc-c-HHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 67 ~vLelGcG~-G-~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
+|+=+|+|. | .++..+++.|.+|++.+.++-++.++ .+++..... ...... . .............
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~----~~g~~~~~~------~~~~~~-~--~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALR----ERGLVIRSD------HGDAVV-P--GPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHH----hCCeEEEeC------CCeEEe-c--ceeecCHHHccCC
Confidence 577789887 4 46666777788899988633333332 223211100 001111 0 0000111111367
Q ss_pred ccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 145 fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
+|+|+.+=.- ...+.++..+...+.++..++.
T Consensus 69 ~d~vilavk~---~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 69 FDLVILAVKA---YQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCEEEEEecc---cCHHHHHHHHHhhcCCCCEEEE
Confidence 8988766333 3467777888887877765544
No 398
>PRK07035 short chain dehydrogenase; Provisional
Probab=79.23 E-value=9.6 Score=30.48 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=46.5
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+++++||=.|++.|+- +..+++.|++|++++. ++.++.+.+.+...+ .++.+...|..+...
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~ 71 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG-------------GKAEALACHIGEMEQ 71 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEEcCCCCHHH
Confidence 35678999999887643 3334566999999996 344444443333221 235556666655533
Q ss_pred cc-------ccCCCccEEEEccc
Q 027594 138 IK-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~ 153 (221)
.. ..-.+.|+++.+..
T Consensus 72 ~~~~~~~~~~~~~~id~li~~ag 94 (252)
T PRK07035 72 IDALFAHIRERHGRLDILVNNAA 94 (252)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 11246899886654
No 399
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=79.22 E-value=20 Score=30.00 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=50.1
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+||-.|||. |...+.+|+ +|. +|++++. ++..+.+++ ...... +.....++. ...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~g~~~v--------------i~~~~~~~~---~~~ 226 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-MGADET--------------VNLARDPLA---AYA 226 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCCCEE--------------EcCCchhhh---hhh
Confidence 788999998875 656655554 588 7889886 444444332 111000 000000000 111
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.....+|+++.+-. ....+....+.|+++|+++..
T Consensus 227 ~~~~~vd~vld~~g------~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 227 ADKGDFDVVFEASG------APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ccCCCccEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 11245899986411 123456667888899987754
No 400
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=79.13 E-value=3.1 Score=32.22 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=29.5
Q ss_pred CeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhh
Q 027594 66 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNT 109 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~ 109 (221)
+.|+.||||.=.-+..+... +.+++=+|.|++++.=++-+....
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~ 125 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESG 125 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTH
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCc
Confidence 38999999986666666653 446777888988877777777664
No 401
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.83 E-value=9.7 Score=31.67 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=54.4
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC-----CCCceEEEEEEecCCCC
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-----LLGSIQAVELDWGNEDH 137 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-----~~~~v~~~~~dw~~~~~ 137 (221)
++|.=||+|. | .++..++..|.+|++.|. ++.++.+...+..+.........-+. ...++++. ..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-----~~-- 77 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-----TD-- 77 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-----CC--
Confidence 5788889997 4 456666777999999996 55666655444433110000000000 00122221 11
Q ss_pred ccccCCCccEEEEcccccC-CcCHHHHHHHHHHhcCCCeEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~-~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
... -...|+|+.+ +.. ......+++.+...++++..++
T Consensus 78 ~~~-~~~aD~Viea--vpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 78 LED-LADCDLVIEA--ATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred HHH-hcCCCEEEEc--CcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 111 2467888865 222 2335567777888888877553
No 402
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=78.79 E-value=4.6 Score=38.46 Aligned_cols=104 Identities=18% Similarity=0.148 Sum_probs=59.8
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCC-----CCCCceEEEEEEecCCCC
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~v~~~~~dw~~~~~ 137 (221)
++|-=||+|+ | -++..+|..|.+|++.|. ++.++.+...+..+.........-+ ....+++... ++ .
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~---~- 410 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL-DY---S- 410 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-CH---H-
Confidence 4788999998 4 456677788999999997 5687777666654322110000000 0012233221 11 1
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
.-...|+||=+ +.-+.+.-..+++.+.++++|+..+.
T Consensus 411 ---~~~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~ila 447 (737)
T TIGR02441 411 ---GFKNADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCIIA 447 (737)
T ss_pred ---HhccCCeehhh-ccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 12457887744 33345556678888888888776543
No 403
>PRK09291 short chain dehydrogenase; Provisional
Probab=78.66 E-value=8.9 Score=30.68 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=43.5
Q ss_pred CCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 65 GKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 65 ~~~vLelGcG~G~~~---l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++++|=.|++.|+-. ..++..|++|++++. ++..+.++......+ ..+.+...|+.+......
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~~~ 68 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG-------------LALRVEKLDLTDAIDRAQ 68 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcceEEEeeCCCHHHHHH
Confidence 457888998655422 223456899988875 333333332222221 246777888877644321
Q ss_pred -cCCCccEEEEccc
Q 027594 141 -VAPPFDYIIGTDV 153 (221)
Q Consensus 141 -~~~~fD~Vi~~d~ 153 (221)
...+.|+|+.+-.
T Consensus 69 ~~~~~id~vi~~ag 82 (257)
T PRK09291 69 AAEWDVDVLLNNAG 82 (257)
T ss_pred HhcCCCCEEEECCC
Confidence 2347899988643
No 404
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.42 E-value=14 Score=31.14 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=26.2
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL 101 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~ 101 (221)
..++.+||=.|+|. |...+.+|+ +|++ |++++. ++..+.+
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~ 203 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFA 203 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 44678888888765 666666664 4887 888875 4444444
No 405
>PRK06181 short chain dehydrogenase; Provisional
Probab=78.42 E-value=17 Score=29.19 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=41.6
Q ss_pred CeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-
Q 027594 66 KRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 139 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~----~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~- 139 (221)
++||=.|+..| +|.. ++..|++|++++. +...+.+...+... ..++.+...|..+.....
T Consensus 2 ~~vlVtGasg~-iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~~~~ 67 (263)
T PRK06181 2 KVVIITGASEG-IGRALAVRLARAGAQLVLAARNETRLASLAQELADH-------------GGEALVVPTDVSDAEACER 67 (263)
T ss_pred CEEEEecCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHHHH
Confidence 56887886443 4443 3456889999986 33334333333221 235666777766543321
Q ss_pred ------ccCCCccEEEEcccc
Q 027594 140 ------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 140 ------~~~~~fD~Vi~~d~~ 154 (221)
....+.|+|+.+-..
T Consensus 68 ~~~~~~~~~~~id~vi~~ag~ 88 (263)
T PRK06181 68 LIEAAVARFGGIDILVNNAGI 88 (263)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 011367999877544
No 406
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.39 E-value=20 Score=28.22 Aligned_cols=78 Identities=26% Similarity=0.300 Sum_probs=44.6
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCCEEEEe-cc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~----a~~ga~v~~~-D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
+.++++|=.|+ +|.+|..+ ++.|++|+.+ +. ++.++.+...+... ..++.+...|..+..
T Consensus 3 ~~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~ 68 (247)
T PRK05565 3 LMGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE-------------GGDAIAVKADVSSEE 68 (247)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHH
Confidence 45678998986 44444443 4568898887 75 33444333333321 135677777776554
Q ss_pred Cccc-------cCCCccEEEEcccc
Q 027594 137 HIKA-------VAPPFDYIIGTDVV 154 (221)
Q Consensus 137 ~~~~-------~~~~fD~Vi~~d~~ 154 (221)
.... ...++|+|+.+...
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 69 DVENLVEQIVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCc
Confidence 3211 11368999877543
No 407
>PRK07478 short chain dehydrogenase; Provisional
Probab=78.36 E-value=6.7 Score=31.47 Aligned_cols=79 Identities=24% Similarity=0.204 Sum_probs=46.4
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|++++. ++.++.+...+...+ .++.+...|..+.+..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~ 70 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG-------------GEAVALAGDVRDEAYA 70 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHHH
Confidence 467899999987653 33344567999999985 444444444433322 2456666666554322
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....+.|+++.+--+
T Consensus 71 ~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 71 KALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 1 112468998877543
No 408
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.34 E-value=0.52 Score=35.76 Aligned_cols=43 Identities=12% Similarity=0.028 Sum_probs=33.7
Q ss_pred ccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+.+++.|+|++..++-+ .+.....++.+.+.|+|||.+-++.+
T Consensus 43 F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred CCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 34678899988877655 34566788999999999999998764
No 409
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=78.33 E-value=7.1 Score=32.84 Aligned_cols=40 Identities=38% Similarity=0.491 Sum_probs=25.4
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHH
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~ 102 (221)
.++.+||-.|+|. |...+.+|+ +|. +|++++. ++..+.++
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAK 209 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 3577888888764 666666665 475 7888875 33444443
No 410
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=78.29 E-value=16 Score=29.10 Aligned_cols=34 Identities=35% Similarity=0.324 Sum_probs=25.4
Q ss_pred CCCCCeEEEeCCCc-c-HHHHHHHHhCC-EEEEecch
Q 027594 62 KLKGKRVIELGAGC-G-VAGFGMALLGC-NVITTDQI 95 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G-~~~l~~a~~ga-~v~~~D~~ 95 (221)
..++.+|+=+|||. | .++..+++.|. +++..|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45678999999995 5 45666777887 48888853
No 411
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=78.10 E-value=8 Score=34.20 Aligned_cols=89 Identities=13% Similarity=0.019 Sum_probs=53.3
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a-~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
....|++|+=+|+|. |......+ .+|++|+.+|. +.-...++. .+. .... .. +
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~---------------~~~~--~~--e- 253 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGY---------------EVMT--ME--E- 253 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCC---------------EEcc--HH--H-
Confidence 346899999999997 77655555 46999999996 333333332 221 1111 10 1
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHH-HHHhcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQT-IFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~-~~~ll~~~g~~~i~~~ 182 (221)
.-..+|+|+.+- .....+.. ..+.+++||+++.+..
T Consensus 254 ---~v~~aDVVI~at------G~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 254 ---AVKEGDIFVTTT------GNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ---HHcCCCEEEECC------CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 123578888642 22344443 4778999998876553
No 412
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.07 E-value=10 Score=32.27 Aligned_cols=102 Identities=20% Similarity=0.167 Sum_probs=54.8
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCC-CCCCCceEEEEEEecCCCCcccc
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG-SDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~-~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++|-=||+|+ | -.+..++..|.+|++.|. ++.++.++..+............. .....++++.. .....
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-------~l~~a 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-------TIEAC 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-------CHHHH
Confidence 4788899996 4 356666788999999997 566666555444321100000000 00011222211 11111
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCe
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT 175 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g 175 (221)
-...|+|+-+ +.-..+.-..+++.+.++++|+.
T Consensus 81 v~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~a 113 (321)
T PRK07066 81 VADADFIQES-APEREALKLELHERISRAAKPDA 113 (321)
T ss_pred hcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCe
Confidence 2456888765 33344445567777777777776
No 413
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.98 E-value=12 Score=30.20 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=46.1
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++++|=.|++.|+ ++..+++.|++|++++.... +.+.+.++.. ..++.+...|..+.....
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~-~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~ 71 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA-PETQAQVEAL-------------GRKFHFITADLIQQKDID 71 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH-HHHHHHHHHc-------------CCeEEEEEeCCCCHHHHH
Confidence 468899999987764 33345567999988875321 2222222221 135666777766554321
Q ss_pred -------ccCCCccEEEEccccc
Q 027594 140 -------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 140 -------~~~~~fD~Vi~~d~~y 155 (221)
....+.|+++.+.-+.
T Consensus 72 ~~~~~~~~~~g~iD~lv~~ag~~ 94 (251)
T PRK12481 72 SIVSQAVEVMGHIDILINNAGII 94 (251)
T ss_pred HHHHHHHHHcCCCCEEEECCCcC
Confidence 1124689998875443
No 414
>PRK07890 short chain dehydrogenase; Provisional
Probab=77.77 E-value=9.5 Score=30.54 Aligned_cols=78 Identities=23% Similarity=0.233 Sum_probs=46.0
Q ss_pred CCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++||=.|++.|+ ++..++..|++|++++. ++.++.+...+... ..++.....|..+.+...
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~ 70 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL-------------GRRALAVPTDITDEDQCA 70 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh-------------CCceEEEecCCCCHHHHH
Confidence 56899999986653 33345567999999986 33344343333221 134666777765543321
Q ss_pred -------ccCCCccEEEEcccc
Q 027594 140 -------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 140 -------~~~~~fD~Vi~~d~~ 154 (221)
..-.+.|+|+.+...
T Consensus 71 ~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 71 NLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHcCCccEEEECCcc
Confidence 112468999887644
No 415
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=77.75 E-value=43 Score=28.82 Aligned_cols=44 Identities=20% Similarity=0.035 Sum_probs=31.3
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
...||.|+.--+ =.....+.++..+...|+|||.++++..++..
T Consensus 74 ~~~~d~~~~~~p-k~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g 117 (342)
T PRK09489 74 VADCDTLIYYWP-KNKQEAQFQLMNLLSLLPVGTDIFVVGENRSG 117 (342)
T ss_pred CCCCCEEEEECC-CCHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Confidence 357999885322 12234566777788889999999999888774
No 416
>PRK08267 short chain dehydrogenase; Provisional
Probab=77.61 E-value=21 Score=28.71 Aligned_cols=74 Identities=20% Similarity=0.204 Sum_probs=43.4
Q ss_pred CeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc--
Q 027594 66 KRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-- 139 (221)
Q Consensus 66 ~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~-- 139 (221)
+++|=.|++.|+ ++..+++.|++|++++. ++.++.+...+. ..++.+...|..+.....
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~D~~~~~~v~~~ 66 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---------------AGNAWTGALDVTDRAAWDAA 66 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---------------CCceEEEEecCCCHHHHHHH
Confidence 468888876543 23334556999999985 444444433222 135677777776654321
Q ss_pred -----c-cCCCccEEEEcccc
Q 027594 140 -----A-VAPPFDYIIGTDVV 154 (221)
Q Consensus 140 -----~-~~~~fD~Vi~~d~~ 154 (221)
. ...++|+|+.+--.
T Consensus 67 ~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 67 LADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHHHcCCCCCEEEECCCC
Confidence 0 03578999877544
No 417
>PRK06194 hypothetical protein; Provisional
Probab=77.60 E-value=6.2 Score=32.33 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=44.3
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|+++|. .+.++.....+...+ .++.+...|..+....
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~d~~~~ 70 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG-------------AEVLGVRTDVSDAAQV 70 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC-------------CeEEEEECCCCCHHHH
Confidence 457889988876543 23334556999999986 334333332222211 2456667666554332
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....+.|+|+.+--.
T Consensus 71 ~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 71 EALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 1 112367999887554
No 418
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=77.45 E-value=9.3 Score=30.44 Aligned_cols=75 Identities=23% Similarity=0.220 Sum_probs=42.2
Q ss_pred CeEEEeCCCccHHHHHHH----HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc--
Q 027594 66 KRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-- 138 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a----~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~-- 138 (221)
+++|=.|+. |.+|..++ +.|++|++++. ++..+.+...+... ..++.+...|+.+....
T Consensus 2 ~~vlItGa~-g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~ 67 (255)
T TIGR01963 2 KTALVTGAA-SGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA-------------GGSVIYLVADVTKEDEIAD 67 (255)
T ss_pred CEEEEcCCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEECCCCCHHHHHH
Confidence 567888854 44444443 45889999986 33333333322221 13567777777765421
Q ss_pred -----cccCCCccEEEEcccc
Q 027594 139 -----KAVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 -----~~~~~~fD~Vi~~d~~ 154 (221)
.....+.|+|+.+...
T Consensus 68 ~~~~~~~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 68 MIAAAAAEFGGLDILVNNAGI 88 (255)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 1113457988876543
No 419
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.31 E-value=8.8 Score=31.88 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=27.8
Q ss_pred eEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHH
Q 027594 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNV 105 (221)
Q Consensus 67 ~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~ 105 (221)
+|.=||+|. | .++..+++.|.+|++.|. ++.++.+.+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Confidence 677888886 4 355556677899999997 55776666544
No 420
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=77.08 E-value=12 Score=30.00 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=46.3
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
+.++++|=.|++.|+ ++..+++.|++|++++. ++.++.+...+...+ .++.....|+.+.+..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dl~~~~~~ 73 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG-------------IKAHAAPFNVTHKQEV 73 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC-------------CeEEEEecCCCCHHHH
Confidence 467899999977653 33344556899999986 334443333333211 2455666676655432
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....++|+|+.+...
T Consensus 74 ~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 74 EAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 1 112468999887654
No 421
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.96 E-value=12 Score=31.29 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=48.4
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..++++++|=.|++.|+ ++..+++.|++|+++|. + ..++.+...+...+ .++.+...|..+.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g-------------~~~~~~~~Dv~d~ 74 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG-------------AKAVAVAGDISQR 74 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC-------------CeEEEEeCCCCCH
Confidence 45688999999998765 34445667999999885 2 23433333333221 3466666666554
Q ss_pred CCccc------cCCCccEEEEcccc
Q 027594 136 DHIKA------VAPPFDYIIGTDVV 154 (221)
Q Consensus 136 ~~~~~------~~~~fD~Vi~~d~~ 154 (221)
+.... ...+.|++|.+--+
T Consensus 75 ~~~~~~~~~~~~~g~iD~li~nAG~ 99 (306)
T PRK07792 75 ATADELVATAVGLGGLDIVVNNAGI 99 (306)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 32210 02468999876544
No 422
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=76.81 E-value=8.6 Score=29.50 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCC-c-cH-HHHHHHHhCCEEEEecc
Q 027594 61 SKLKGKRVIELGAG-C-GV-AGFGMALLGCNVITTDQ 94 (221)
Q Consensus 61 ~~~~~~~vLelGcG-~-G~-~~l~~a~~ga~v~~~D~ 94 (221)
..+++++||=+|+| + |. .+-.+...|++|+.++.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r 76 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS 76 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC
Confidence 46799999999999 3 76 56666678889888884
No 423
>PRK12937 short chain dehydrogenase; Provisional
Probab=76.79 E-value=29 Score=27.38 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=43.2
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+++++|=.|+..|+ ++..+++.|++++.+.. +...+.+.+.+... ..++.+...|..+...
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~ 69 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAA-------------GGRAIAVQADVADAAA 69 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHH
Confidence 467899999986543 23334556888877653 22333333333322 1356666666655432
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 70 VTRLFDAAETAFGRIDVLVNNAGV 93 (245)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 21 112467988876543
No 424
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=76.74 E-value=7.6 Score=32.92 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=25.9
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLL 101 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~ 101 (221)
..++.+||=.|+|. |..++.+|+ +|+ +|++++. ++-.+.+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~ 213 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELA 213 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 34678888888764 555555554 588 7888885 4444544
No 425
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=76.70 E-value=9.4 Score=32.08 Aligned_cols=40 Identities=33% Similarity=0.394 Sum_probs=26.3
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLL 101 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~ 101 (221)
..++.+||-.|+|. |...+.+|+ +|.+|+++.. ++..+.+
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~ 199 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFA 199 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHH
Confidence 34678999998764 556665654 5889888754 4444444
No 426
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=76.48 E-value=5.3 Score=33.98 Aligned_cols=90 Identities=16% Similarity=0.042 Sum_probs=52.1
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH--hC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL--LG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~--~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+|.+||=+|||. |+.++.+++ .| ++|+++|. ++-++.+++ .+. .... .++.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--------------~~~~-~~~~---- 218 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--------------TYLI-DDIP---- 218 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--------------eeeh-hhhh----
Confidence 4678999999987 877776665 34 57999986 444454442 110 1000 0110
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
....+|+|+- +.-.. .....+....++++++|++++..
T Consensus 219 ---~~~g~d~viD--~~G~~-~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 219 ---EDLAVDHAFE--CVGGR-GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ---hccCCcEEEE--CCCCC-ccHHHHHHHHHhCcCCcEEEEEe
Confidence 1124788873 33211 13445666778899999987644
No 427
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=76.43 E-value=8.7 Score=36.45 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=58.0
Q ss_pred CeEEEeCCCc-c-HHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC-----CCCceEEEEEEecCCC
Q 027594 66 KRVIELGAGC-G-VAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-----LLGSIQAVELDWGNED 136 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a-~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-----~~~~v~~~~~dw~~~~ 136 (221)
++|.=||+|+ | -++..+| ..|.+|++.|. ++.++.++.++............-+. ...++++.. ++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~---- 384 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DY---- 384 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-Ch----
Confidence 5799999998 4 3555566 67999999997 56777776666543211100000000 012333321 11
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
. .-...|+||=+ +.-..+.-..++..+.+.++|+..+
T Consensus 385 --~-~~~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~il 421 (708)
T PRK11154 385 --R-GFKHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIF 421 (708)
T ss_pred --H-HhccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEE
Confidence 1 12457888754 3333455667778888877777554
No 428
>PRK08303 short chain dehydrogenase; Provisional
Probab=76.38 E-value=12 Score=31.46 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=24.3
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ 94 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~ 94 (221)
.++++++|=.|++.|+ ++..+++.|++|++++.
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGR 40 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 4578999999988764 33344567999988874
No 429
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=76.31 E-value=3.9 Score=31.13 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=32.5
Q ss_pred CCCCcceEEEEEcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCcc
Q 027594 7 NSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCG 76 (221)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G 76 (221)
|+|....+++.+.|.++++..+| ...|.+||... ...|.+ .|||.|
T Consensus 2 ~~~~~~~i~~~vNG~~~~~~~~~------------~~~Ll~~LR~~---------gltgtK---~GC~~G 47 (159)
T PRK09908 2 NHSETITIECTINGMPFQLHAAP------------GTPLSELLREQ---------GLLSVK---QGCCVG 47 (159)
T ss_pred CCCCceeEEEEECCEEEEEecCC------------CCcHHHHHHHc---------CCCCCC---CCcCCC
Confidence 67888899999999999886544 34577888742 223333 488887
No 430
>PRK06128 oxidoreductase; Provisional
Probab=76.29 E-value=31 Score=28.56 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=43.7
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-h--hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E--VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~-~--~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..+++++|=.|+..|+ ++..+++.|++|++++.+ + ..+...+.+... ..++.+...|..+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~ 118 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE-------------GRKAVALPGDLKDE 118 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc-------------CCeEEEEecCCCCH
Confidence 3568899999976553 333445569998877642 1 222222222221 13455666666554
Q ss_pred CCcc-------ccCCCccEEEEcccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~~ 154 (221)
.... ....+.|++|.+-..
T Consensus 119 ~~v~~~~~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 119 AFCRQLVERAVKELGGLDILVNIAGK 144 (300)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 3221 112468999877543
No 431
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=76.24 E-value=4.1 Score=33.25 Aligned_cols=102 Identities=23% Similarity=0.251 Sum_probs=55.9
Q ss_pred CCCCeEEEeCCCc-cHHHH-HHHHhCC-EEEEecchh-hHHHHHHHHHHh-------hh-----ccccCCCCCCCCCceE
Q 027594 63 LKGKRVIELGAGC-GVAGF-GMALLGC-NVITTDQIE-VLPLLKRNVEWN-------TS-----RISQMNPGSDLLGSIQ 126 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l-~~a~~ga-~v~~~D~~~-~l~~~~~n~~~n-------~~-----~~~~~~~~~~~~~~v~ 126 (221)
++..+|+=+|+|- |-.+. +||+.|. +++.+|.++ .+.+..+-+..- .. .+.+.+| .-+|+
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP----~c~V~ 103 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINP----ECEVT 103 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCC----CceEe
Confidence 4667999999996 76655 4567775 588998754 444443322211 10 0112233 23344
Q ss_pred EEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHh
Q 027594 127 AVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL 170 (221)
Q Consensus 127 ~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~l 170 (221)
....-|............||+|| |++=....-..|+..+.+.
T Consensus 104 ~~~~f~t~en~~~~~~~~~DyvI--DaiD~v~~Kv~Li~~c~~~ 145 (263)
T COG1179 104 AINDFITEENLEDLLSKGFDYVI--DAIDSVRAKVALIAYCRRN 145 (263)
T ss_pred ehHhhhCHhHHHHHhcCCCCEEE--EchhhhHHHHHHHHHHHHc
Confidence 44433333222223345899998 5555555556677766664
No 432
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=75.85 E-value=34 Score=26.30 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=65.1
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCE-EEEecchh-hH-HHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VL-PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~~~-~l-~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
|++++=+|+..=.+-..+.+.||. |+.+++.. -+ +..+..+..- ..+.+. .+|. .-
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi--------------~p~df~-~~~~------~y 60 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSI--------------LPVDFA-KNWQ------KY 60 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccc--------------cHHHHH-HHHH------Hh
Confidence 678899999877776677777875 77777632 10 1000000000 000000 0121 12
Q ss_pred CCCccEEEEcccccC-----------CcCHHHHHHHHHHhcCCCeEEEEEEEecChhH--------HHHHHHHHhcCCeE
Q 027594 142 APPFDYIIGTDVVYA-----------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSV--------HEQMLQMWKSNFNV 202 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~-----------~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~--------~~~~~~~~~~~f~v 202 (221)
..+||++.+...+-+ +.--..-+..++++|||||.++++.+...+.+ ....+.++-.+|++
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 456887766555532 11233456778889999999999887654321 12334555567766
Q ss_pred EEe
Q 027594 203 KLV 205 (221)
Q Consensus 203 ~~v 205 (221)
-..
T Consensus 141 i~t 143 (177)
T PF03269_consen 141 IDT 143 (177)
T ss_pred Eee
Confidence 443
No 433
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=75.77 E-value=23 Score=30.02 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=51.6
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEE--EEEEecCCCCcccc
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA--VELDWGNEDHIKAV 141 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~--~~~dw~~~~~~~~~ 141 (221)
++|.=||+|. | .++..+++.|.+|++.|.+...+.+ ..++....... ...... ..+..... . ..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~----~~~g~~~~~~~-----~~~~~~~~~~~~~~~~--~-~~ 70 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDEL----RAHGLTLTDYR-----GRDVRVPPSAIAFSTD--P-AA 70 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHH----HhcCceeecCC-----CcceecccceeEeccC--h-hh
Confidence 4688889886 4 5677777789999999964322222 22332111000 000000 00000111 1 12
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
...+|+|+.+=..+ ....+++.+...++++..++.
T Consensus 71 ~~~~D~vil~vk~~---~~~~~~~~l~~~~~~~~iii~ 105 (341)
T PRK08229 71 LATADLVLVTVKSA---ATADAAAALAGHARPGAVVVS 105 (341)
T ss_pred ccCCCEEEEEecCc---chHHHHHHHHhhCCCCCEEEE
Confidence 35789998764333 346677777777777765443
No 434
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=75.72 E-value=10 Score=32.54 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=25.4
Q ss_pred CCCCCeEEEeCCCc-c-HHHHHHHHhCC-EEEEecc
Q 027594 62 KLKGKRVIELGAGC-G-VAGFGMALLGC-NVITTDQ 94 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G-~~~l~~a~~ga-~v~~~D~ 94 (221)
..++++||=+|||. | .++..+++.|. +++.+|.
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADR 56 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45678999999996 5 35666778886 6888885
No 435
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=75.71 E-value=11 Score=27.46 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=43.5
Q ss_pred CCCCCCeEEEeCCCc-c-HHHHHHHHhCCE-EEEecc-hh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 61 SKLKGKRVIELGAGC-G-VAGFGMALLGCN-VITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G-~~~l~~a~~ga~-v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..+++++||=||+|- | .....++..|++ |+.+.- .+ +-++++. + . ...+.+ ..|.+.
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~-~---~------------~~~~~~--~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEE-F---G------------GVNIEA--IPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHH-H---T------------GCSEEE--EEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-c---C------------ccccce--eeHHHH
Confidence 356899999999985 3 334445567876 888885 33 3222222 2 1 123333 344433
Q ss_pred CCccccCCCccEEEEcccccCC
Q 027594 136 DHIKAVAPPFDYIIGTDVVYAE 157 (221)
Q Consensus 136 ~~~~~~~~~fD~Vi~~d~~y~~ 157 (221)
. .....+|+||.+-+.-..
T Consensus 70 ~---~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 70 E---EALQEADIVINATPSGMP 88 (135)
T ss_dssp C---HHHHTESEEEE-SSTTST
T ss_pred H---HHHhhCCeEEEecCCCCc
Confidence 2 124579999998665544
No 436
>PRK06720 hypothetical protein; Provisional
Probab=75.70 E-value=19 Score=27.48 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=45.9
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++.+|=.|.+.|+ ++..+++.|++|+++|. .+..+.+...+...+ ..+.+..+|..+....
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dl~~~~~v 80 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG-------------GEALFVSYDMEKQGDW 80 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHHH
Confidence 467899999987764 33445567999999996 334433333332211 2345556666544321
Q ss_pred c-------ccCCCccEEEEcccccC
Q 027594 139 K-------AVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~y~ 156 (221)
. ..-...|+++.+--++.
T Consensus 81 ~~~v~~~~~~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 81 QRVISITLNAFSRIDMLFQNAGLYK 105 (169)
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCC
Confidence 1 11246788888754443
No 437
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=75.46 E-value=8 Score=30.47 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=25.5
Q ss_pred CCCCCeEEEeCCCc-c-HHHHHHHHhCC-EEEEecch
Q 027594 62 KLKGKRVIELGAGC-G-VAGFGMALLGC-NVITTDQI 95 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G-~~~l~~a~~ga-~v~~~D~~ 95 (221)
..++++||=+|||. | .++..+++.|. +++.+|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 34678999999995 5 35666777886 69999853
No 438
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=75.41 E-value=24 Score=28.55 Aligned_cols=91 Identities=20% Similarity=0.171 Sum_probs=50.0
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.++|=.|||. |...+.+|+ +|.+ |++++. ++-.+.+++ .+. .+.+... .. .
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~----~g~-----------~~~~~~~----~~--~ 153 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA----LGP-----------ADPVAAD----TA--D 153 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH----cCC-----------Ccccccc----ch--h
Confidence 44678899998875 666665554 5888 999986 444443332 110 0011000 00 0
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. .....+|+|+-+ .. ....+....+.++++|.++..
T Consensus 154 ~-~~~~~~d~vl~~--~~----~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 154 E-IGGRGADVVIEA--SG----SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred h-hcCCCCCEEEEc--cC----ChHHHHHHHHHhcCCcEEEEE
Confidence 0 123468888843 11 123556667778888887654
No 439
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=75.37 E-value=14 Score=30.54 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=40.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhh
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNT 109 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~ 109 (221)
..++..|||--+|+|..++++.++|.++++.|+ ++-++.+.+.+....
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 457889999999999999999999999999997 667777777666543
No 440
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=75.37 E-value=21 Score=30.30 Aligned_cols=38 Identities=37% Similarity=0.448 Sum_probs=25.1
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHH
Q 027594 64 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLL 101 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~ 101 (221)
++.+||=.|+|. |...+.+|+ +|+ +|++++. ++-.+.+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~ 218 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELA 218 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 677888888764 555555554 588 8988885 3333333
No 441
>PRK07791 short chain dehydrogenase; Provisional
Probab=75.34 E-value=15 Score=30.29 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=46.3
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-h---------hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEE
Q 027594 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-I---------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE 129 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~-~---------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ 129 (221)
.+++++|=.|++.|+- +..+++.|++|+++|. . +.++.+...+...+ .++.+..
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~ 70 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG-------------GEAVANG 70 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC-------------CceEEEe
Confidence 4688999999888753 3345567999888874 2 32333322222211 3455666
Q ss_pred EEecCCCCcc-------ccCCCccEEEEccccc
Q 027594 130 LDWGNEDHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 130 ~dw~~~~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
.|..+.+... ....+.|+++.+--+.
T Consensus 71 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 71 DDIADWDGAANLVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 6665543321 1125689998875543
No 442
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=75.18 E-value=8.6 Score=31.36 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=45.9
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+++++|=.|++.|+ ++..+++.|++|++++. ++..+.+...+...+ .++.+...|..+...
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~ 73 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG-------------GEALAVKADVLDKES 73 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEECCCCCHHH
Confidence 4578899999987654 33344566999999986 334443333333221 345666666655432
Q ss_pred cc-------ccCCCccEEEEccc
Q 027594 138 IK-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~ 153 (221)
.. ..-.+.|+++.+--
T Consensus 74 v~~~~~~~~~~~g~id~li~~ag 96 (278)
T PRK08277 74 LEQARQQILEDFGPCDILINGAG 96 (278)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 11246899887643
No 443
>PRK07877 hypothetical protein; Provisional
Probab=75.10 E-value=8.4 Score=36.59 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=26.4
Q ss_pred CCCCCeEEEeCCCccH-HHHHHHHhC--CEEEEecch
Q 027594 62 KLKGKRVIELGAGCGV-AGFGMALLG--CNVITTDQI 95 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~-~~l~~a~~g--a~v~~~D~~ 95 (221)
..++.+|+=+|||.|. ++..+|+.| .+++.+|.+
T Consensus 104 ~L~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D 140 (722)
T PRK07877 104 RLGRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFD 140 (722)
T ss_pred HHhcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCC
Confidence 3567899999999864 566778888 479998853
No 444
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=74.99 E-value=7.9 Score=32.61 Aligned_cols=37 Identities=35% Similarity=0.534 Sum_probs=25.3
Q ss_pred CeEEEeCC-C-ccHHHHHHHH-hCC-EEEEecc-hhhHHHHH
Q 027594 66 KRVIELGA-G-CGVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (221)
Q Consensus 66 ~~vLelGc-G-~G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~ 102 (221)
.+||=.|+ | .|..++.+|+ +|+ +|++++. ++-.+.++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~ 197 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLK 197 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 79999987 4 3777776765 588 7988875 44444443
No 445
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=74.94 E-value=17 Score=29.20 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=46.6
Q ss_pred CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~---l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++++||=.|+..|+-. ..++..|++|++++. .+.++.+...+... ..++.+...|..+.+.
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~ 74 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-------------GGQAFACRCDITSEQE 74 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHH
Confidence 456899999997766432 234556899988885 34444433333221 1245666677665543
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....++|+++.+...
T Consensus 75 i~~~~~~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 75 LSALADFALSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 21 112467988876543
No 446
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=74.90 E-value=9.6 Score=30.30 Aligned_cols=76 Identities=25% Similarity=0.299 Sum_probs=43.5
Q ss_pred CCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~----~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
+++++|=.|+..| +|.. +++.|++|++++. .+..+.+...+... ..++.+...|..+....
T Consensus 2 ~~~~ilItGas~~-iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~~~ 67 (250)
T TIGR03206 2 KDKTAIVTGGGGG-IGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK-------------GGNAQAFACDITDRDSV 67 (250)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHHH
Confidence 5688999997544 3333 3456889999986 33444444433322 13466777666554322
Q ss_pred c-------ccCCCccEEEEccc
Q 027594 139 K-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~ 153 (221)
. ....+.|++|.+..
T Consensus 68 ~~~~~~~~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 68 DTAVAAAEQALGPVDVLVNNAG 89 (250)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 11236798877654
No 447
>PRK07102 short chain dehydrogenase; Provisional
Probab=74.88 E-value=14 Score=29.27 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=41.7
Q ss_pred CeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-
Q 027594 66 KRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 139 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~----~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~- 139 (221)
+++|=.|+..| +|.. +++.|++|+++|. ++..+.+..++.... ..++.+...|..+.....
T Consensus 2 ~~vlItGas~g-iG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dl~~~~~~~~ 68 (243)
T PRK07102 2 KKILIIGATSD-IARACARRYAAAGARLYLAARDVERLERLADDLRARG------------AVAVSTHELDILDTASHAA 68 (243)
T ss_pred cEEEEEcCCcH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc------------CCeEEEEecCCCChHHHHH
Confidence 57888886543 3433 4456889999986 333333333333221 246777777776654321
Q ss_pred ---ccCCCccEEEEcc
Q 027594 140 ---AVAPPFDYIIGTD 152 (221)
Q Consensus 140 ---~~~~~fD~Vi~~d 152 (221)
.....+|+++.+-
T Consensus 69 ~~~~~~~~~d~vv~~a 84 (243)
T PRK07102 69 FLDSLPALPDIVLIAV 84 (243)
T ss_pred HHHHHhhcCCEEEECC
Confidence 1123579888654
No 448
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=74.60 E-value=34 Score=28.61 Aligned_cols=33 Identities=30% Similarity=0.533 Sum_probs=23.4
Q ss_pred CCCCCeEEEeCCCccHHHHHH--HHhCC-EEEEecc
Q 027594 62 KLKGKRVIELGAGCGVAGFGM--ALLGC-NVITTDQ 94 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~--a~~ga-~v~~~D~ 94 (221)
..++++||=||||--.-++++ +..|+ +++.++.
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nR 156 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNR 156 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 457889999999975444443 45676 6888875
No 449
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=74.58 E-value=16 Score=29.25 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=46.2
Q ss_pred CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~----a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.++++++|=.|+. |.+|..+ +..|++|++++. ++.++.+...+...+ .++.+...|..+..
T Consensus 7 ~~~~k~vlItGa~-g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-------------~~~~~~~~D~~~~~ 72 (255)
T PRK07523 7 DLTGRRALVTGSS-QGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG-------------LSAHALAFDVTDHD 72 (255)
T ss_pred CCCCCEEEEECCc-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-------------ceEEEEEccCCCHH
Confidence 4578999999964 4444444 446899999986 334444443333221 24566666666543
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+|+.+.-..
T Consensus 73 ~~~~~~~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 73 AVRAAIDAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 221 1124689988775543
No 450
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.53 E-value=11 Score=31.68 Aligned_cols=108 Identities=22% Similarity=0.315 Sum_probs=68.2
Q ss_pred CeEEEeCCCccHHHHHHHHh-CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-cc--
Q 027594 66 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AV-- 141 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~-ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~-~~-- 141 (221)
..|+-||||.=.=+--+-.. +.+|.=+|+|++++.=++.+...+.. ....++++..|..+.+-.. ..
T Consensus 94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~---------~~~~~~~Va~Dl~~~dw~~~L~~~ 164 (297)
T COG3315 94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGAT---------PPAHRRLVAVDLREDDWPQALAAA 164 (297)
T ss_pred cEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCC---------CCceEEEEeccccccchHHHHHhc
Confidence 68999999943111111111 45688889999888777777765531 1235666666655332111 11
Q ss_pred ---CCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 142 ---APPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 142 ---~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....-++|+-.+++. ++....+++.|..++.||..++..+.
T Consensus 165 G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 165 GFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 233446666666544 66788999999999999999887764
No 451
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.86 E-value=9.7 Score=30.16 Aligned_cols=77 Identities=22% Similarity=0.165 Sum_probs=42.8
Q ss_pred CCCCeEEEeCCCccHHHHHHH----HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a----~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+++++|=.|+ +|.+|..++ ..|++|++++. ++..+.....+... ..++.+...|..+...
T Consensus 5 ~~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~ 70 (239)
T PRK07666 5 LQGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY-------------GVKVVIATADVSDYEE 70 (239)
T ss_pred CCCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-------------CCeEEEEECCCCCHHH
Confidence 35678999996 555555443 45889999986 33333333333221 1356666665544432
Q ss_pred cc-------ccCCCccEEEEccc
Q 027594 138 IK-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~ 153 (221)
.. ....+.|+|+.+..
T Consensus 71 ~~~~~~~~~~~~~~id~vi~~ag 93 (239)
T PRK07666 71 VTAAIEQLKNELGSIDILINNAG 93 (239)
T ss_pred HHHHHHHHHHHcCCccEEEEcCc
Confidence 11 01246798887643
No 452
>PRK07774 short chain dehydrogenase; Provisional
Probab=73.80 E-value=11 Score=29.93 Aligned_cols=79 Identities=24% Similarity=0.322 Sum_probs=44.1
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~----a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+++++|=.|+.. .+|..+ +..|++|++++. ++..+.+...+... ..++.....|..+...
T Consensus 4 ~~~k~vlItGasg-~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~ 69 (250)
T PRK07774 4 FDDKVAIVTGAAG-GIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD-------------GGTAIAVQVDVSDPDS 69 (250)
T ss_pred cCCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHH
Confidence 4678899999543 444444 456899999986 33444443333221 1234555666655432
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+||.+-.++
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~~ 94 (250)
T PRK07774 70 AKAMADATVSAFGGIDYLVNNAAIY 94 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCc
Confidence 21 1123689999876543
No 453
>PRK08328 hypothetical protein; Provisional
Probab=73.61 E-value=16 Score=29.38 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=24.4
Q ss_pred CCCCCeEEEeCCCc-cH-HHHHHHHhCC-EEEEecc
Q 027594 62 KLKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQ 94 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~-~~l~~a~~ga-~v~~~D~ 94 (221)
..++.+||=+|||. |. ++..+++.|. +++.+|.
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34678999999995 54 4556677786 5888884
No 454
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=73.52 E-value=14 Score=31.93 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=23.0
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ 94 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~ 94 (221)
..+|.+||=.|+|. |..++.+|+ +|+ +|++++.
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~ 236 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEI 236 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34567888888875 666665554 588 6888885
No 455
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=73.44 E-value=9.5 Score=34.09 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=58.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHH--hC--CEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMAL--LG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~--~g--a~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.++...++|+|+|.|.-.-++.. .+ -.++.+|-+ .|+.....+... +-. ...+.+..+-..+..
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~----------~g~~~v~~~~~~r~~ 266 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSH----------IGEPIVRKLVFHRQR 266 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhh----------cCchhccccchhccc
Confidence 44556889999998754333332 22 248899974 477777666554 110 011111111011111
Q ss_pred CccccCCCccEEEEcccccCCcC---HHHHHHHH-HHhcCCCeEEEEEEEe
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHL---LEPLLQTI-FALSGPKTTILLGYEI 183 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~---~~~l~~~~-~~ll~~~g~~~i~~~~ 183 (221)
........||+||++-.+++... ...+...+ ....++|+.+++....
T Consensus 267 ~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 267 LPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred CCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 11122456999999988876332 22333333 3346677777765543
No 456
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=73.37 E-value=11 Score=27.73 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=26.0
Q ss_pred EeCCCcc--HHHHHHH--Hh--CCEEEEecc-hhhHHHHHHH--HHHhh
Q 027594 70 ELGAGCG--VAGFGMA--LL--GCNVITTDQ-IEVLPLLKRN--VEWNT 109 (221)
Q Consensus 70 elGcG~G--~~~l~~a--~~--ga~v~~~D~-~~~l~~~~~n--~~~n~ 109 (221)
|+|+..| .....+. .. +.+|++.|. +..++.+++| +..|.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND 49 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence 8999999 4444332 23 457999996 7789999999 66663
No 457
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=73.35 E-value=24 Score=24.58 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=35.8
Q ss_pred CccEEEEcccccCCc--------------CHHHHHHHHHHhcCCCeEEEEEEEecCh---hHHHHHHHHHhcCCeEEEec
Q 027594 144 PFDYIIGTDVVYAEH--------------LLEPLLQTIFALSGPKTTILLGYEIRST---SVHEQMLQMWKSNFNVKLVP 206 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~--------------~~~~l~~~~~~ll~~~g~~~i~~~~r~~---~~~~~~~~~~~~~f~v~~v~ 206 (221)
+||+||+|||+-... ....++....+++ +|.+.+..+.+-- ...+.+.+.+-....+..+.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~~~i~~i~ 79 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNNTNIKKII 79 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcCCCeeEEE
Confidence 699999999965322 2233566666677 7776555554322 23455666655555554444
Q ss_pred C
Q 027594 207 K 207 (221)
Q Consensus 207 ~ 207 (221)
+
T Consensus 80 ~ 80 (106)
T PF07669_consen 80 D 80 (106)
T ss_pred E
Confidence 3
No 458
>PRK09186 flagellin modification protein A; Provisional
Probab=73.09 E-value=11 Score=30.23 Aligned_cols=78 Identities=23% Similarity=0.220 Sum_probs=44.1
Q ss_pred CCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++||=.|++.|+ ++..+++.|++|++++. ++.++.+...+..... ...+.+...|..+.....
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~d~~~~~ 71 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFK-----------SKKLSLVELDITDQESLE 71 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcC-----------CCceeEEEecCCCHHHHH
Confidence 57899999986543 23334456899999885 4444444444332210 123555566776654321
Q ss_pred -------ccCCCccEEEEcc
Q 027594 140 -------AVAPPFDYIIGTD 152 (221)
Q Consensus 140 -------~~~~~fD~Vi~~d 152 (221)
..-.+.|+|+.+-
T Consensus 72 ~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 72 EFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHcCCccEEEECC
Confidence 1123579998764
No 459
>PRK07904 short chain dehydrogenase; Provisional
Probab=72.96 E-value=14 Score=29.94 Aligned_cols=79 Identities=10% Similarity=0.020 Sum_probs=45.5
Q ss_pred CCCeEEEeCCCccHHHH---HHHHhC-CEEEEecc-hh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 64 KGKRVIELGAGCGVAGF---GMALLG-CNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l---~~a~~g-a~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+++||=.|+..|+-.- .+++.| ++|++++. ++ .++.+.+.+...+ ..++.+..+|..+...
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~------------~~~v~~~~~D~~~~~~ 74 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG------------ASSVEVIDFDALDTDS 74 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC------------CCceEEEEecCCChHH
Confidence 56789999997664322 234454 78999885 33 2444444443322 1357778887766543
Q ss_pred cc------ccCCCccEEEEcccc
Q 027594 138 IK------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~------~~~~~fD~Vi~~d~~ 154 (221)
.. ......|+++.+-..
T Consensus 75 ~~~~~~~~~~~g~id~li~~ag~ 97 (253)
T PRK07904 75 HPKVIDAAFAGGDVDVAIVAFGL 97 (253)
T ss_pred HHHHHHHHHhcCCCCEEEEeeec
Confidence 11 012478988765433
No 460
>PRK07831 short chain dehydrogenase; Provisional
Probab=72.89 E-value=20 Score=28.84 Aligned_cols=83 Identities=22% Similarity=0.256 Sum_probs=47.6
Q ss_pred CCCCCCeEEEeCC-CccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 61 SKLKGKRVIELGA-GCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 61 ~~~~~~~vLelGc-G~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
...+++++|=.|+ |.|+ ++..++..|++|+++|. ++.++.+...+....- ..++.....|..+.
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~ 81 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELG-----------LGRVEAVVCDVTSE 81 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcC-----------CceEEEEEccCCCH
Confidence 3456789999996 4443 33344567999999886 3344444444433210 13466667666554
Q ss_pred CCcc-------ccCCCccEEEEcccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~~ 154 (221)
.... ....+.|+++.+..+
T Consensus 82 ~~~~~~~~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 82 AQVDALIDAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3221 112468998887654
No 461
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=72.82 E-value=15 Score=30.59 Aligned_cols=41 Identities=27% Similarity=0.182 Sum_probs=28.3
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHH
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVE 106 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~ 106 (221)
++|-=||+|. | .++..++..|.+|++.|. ++.++.+++.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~ 48 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSIS 48 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 4677789886 4 455566677899999996 556665555443
No 462
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=72.59 E-value=3 Score=33.81 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=54.6
Q ss_pred CCC-CeEEEeCCCccHHHHHHHHh--------CC---EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEE
Q 027594 63 LKG-KRVIELGAGCGVAGFGMALL--------GC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL 130 (221)
Q Consensus 63 ~~~-~~vLelGcG~G~~~l~~a~~--------ga---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~ 130 (221)
++| ++|+||.+-.|..+-++++. +. +++++|+..|.+ -+-|...+.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----------------------I~GV~qlq~ 96 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----------------------IEGVIQLQG 96 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----------------------cCceEEeec
Confidence 344 58999999999999999864 22 389999643322 112334444
Q ss_pred EecCCCCc-----cccCCCccEEEEccc-----ccCCc------CHHHHHHHHHHhcCCCeEEEE
Q 027594 131 DWGNEDHI-----KAVAPPFDYIIGTDV-----VYAEH------LLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 131 dw~~~~~~-----~~~~~~fD~Vi~~d~-----~y~~~------~~~~l~~~~~~ll~~~g~~~i 179 (221)
|....... .+..++.|+|++... +|..+ .+...+.....+|+|||.++-
T Consensus 97 DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 97 DITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred ccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 44333221 122468899997532 22211 122233334556899999753
No 463
>PRK05875 short chain dehydrogenase; Provisional
Probab=72.57 E-value=11 Score=30.53 Aligned_cols=80 Identities=15% Similarity=0.261 Sum_probs=44.2
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++++|=.|++.|+ ++..+++.|++|++++. ++..+.....+..... ..++.+...|..+....
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~~~~~~ 73 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKG-----------AGAVRYEPADVTDEDQV 73 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccC-----------CCceEEEEcCCCCHHHH
Confidence 467899999976543 22234456899999985 3333333332221110 13566667676655432
Q ss_pred cc-------cCCCccEEEEccc
Q 027594 139 KA-------VAPPFDYIIGTDV 153 (221)
Q Consensus 139 ~~-------~~~~fD~Vi~~d~ 153 (221)
.. ...+.|+++.+--
T Consensus 74 ~~~~~~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 74 ARAVDAATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 11 1236799987643
No 464
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=72.52 E-value=21 Score=28.80 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=46.3
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.++++++|=.|++.|+ ++..+++.|++|+++.. ++.++.+.+.+.... ..++.+..+|..+.+
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~ 72 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY------------GIKAKAYPLNILEPE 72 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc------------CCceEEEEcCCCCHH
Confidence 4578999999988764 34445667999887753 333433333332211 135667777766543
Q ss_pred Ccc-------ccCCCccEEEEcc
Q 027594 137 HIK-------AVAPPFDYIIGTD 152 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d 152 (221)
... ....++|+++.+-
T Consensus 73 ~~~~~~~~~~~~~g~id~lv~nA 95 (260)
T PRK08416 73 TYKELFKKIDEDFDRVDFFISNA 95 (260)
T ss_pred HHHHHHHHHHHhcCCccEEEECc
Confidence 221 1124689888764
No 465
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.43 E-value=12 Score=30.21 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=23.2
Q ss_pred CCCCCeEEEeCCC-ccHHHHH----HHHhCCEEEEecc
Q 027594 62 KLKGKRVIELGAG-CGVAGFG----MALLGCNVITTDQ 94 (221)
Q Consensus 62 ~~~~~~vLelGcG-~G~~~l~----~a~~ga~v~~~D~ 94 (221)
.++++++|=.|+| ++-+|.. +++.|++|++++.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r 41 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGF 41 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecC
Confidence 3568899999984 3434444 4456999999885
No 466
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=72.29 E-value=29 Score=27.38 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCCCCeEEEeCCCc-cHH-HHHHHHhCCEEEEec
Q 027594 62 KLKGKRVIELGAGC-GVA-GFGMALLGCNVITTD 93 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~-~l~~a~~ga~v~~~D 93 (221)
+.+|++||=+|+|. |.- .-.+...|++|+.++
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 46889999999986 443 224456789988886
No 467
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=72.08 E-value=25 Score=27.89 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=44.8
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++++|=.|++.|+ ++..+++.|++|++++... .+.+...+... ..++.+...|..+.....
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~ 68 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEAL-------------GRRFLSLTADLSDIEAIK 68 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhc-------------CCceEEEECCCCCHHHHH
Confidence 478899999997653 2333445699999988532 12222222221 134666677766554321
Q ss_pred -------ccCCCccEEEEcccc
Q 027594 140 -------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 140 -------~~~~~fD~Vi~~d~~ 154 (221)
....+.|++|.+.-.
T Consensus 69 ~~~~~~~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 69 ALVDSAVEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 112468999877544
No 468
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=72.01 E-value=35 Score=32.03 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=35.6
Q ss_pred CCccEEEEcc--cccCCcC-HHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-hcCCeEEEecC
Q 027594 143 PPFDYIIGTD--VVYAEHL-LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK 207 (221)
Q Consensus 143 ~~fD~Vi~~d--~~y~~~~-~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-~~~f~v~~v~~ 207 (221)
..||+++... +--+++. -+.+++.+.++++|+|++.- +.. . ......+ ..+|+++..+.
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t-~t~-a----~~vr~~l~~~GF~v~~~~~ 227 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT-FTS-A----GFVRRGLQEAGFTVRKVKG 227 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE-eeh-H----HHHHHHHHHcCCeeeecCC
Confidence 5689998642 2233333 25689999999999998643 421 1 1222223 46888876543
No 469
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=71.99 E-value=15 Score=30.47 Aligned_cols=77 Identities=16% Similarity=0.096 Sum_probs=41.4
Q ss_pred CCCeEEEeCCCccHHHHHHHH----hCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~----~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++||=.|+ +|.+|..+++ .|.+|++++.+ +.............. .+++.+...|..+....
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~~ 70 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGA-----------KERLHLFKANLLEEGSF 70 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCC-----------CCceEEEeccccCcchH
Confidence 4678998885 5666666553 48888877642 211111111111010 13567777777665443
Q ss_pred cccCCCccEEEEcc
Q 027594 139 KAVAPPFDYIIGTD 152 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d 152 (221)
...-..+|.|+..-
T Consensus 71 ~~~~~~~d~Vih~A 84 (322)
T PLN02662 71 DSVVDGCEGVFHTA 84 (322)
T ss_pred HHHHcCCCEEEEeC
Confidence 22234578886543
No 470
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=71.96 E-value=11 Score=30.28 Aligned_cols=33 Identities=39% Similarity=0.470 Sum_probs=24.3
Q ss_pred CCCCCeEEEeCCCc-c-HHHHHHHHhCC-EEEEecc
Q 027594 62 KLKGKRVIELGAGC-G-VAGFGMALLGC-NVITTDQ 94 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G-~~~l~~a~~ga-~v~~~D~ 94 (221)
..++++|+=+|||. | -++..+++.|. +++.+|.
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34678999999995 5 45666677786 5888874
No 471
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=71.91 E-value=36 Score=26.06 Aligned_cols=28 Identities=32% Similarity=0.289 Sum_probs=21.0
Q ss_pred eEEEeCCCc-cH-HHHHHHHhCC-EEEEecc
Q 027594 67 RVIELGAGC-GV-AGFGMALLGC-NVITTDQ 94 (221)
Q Consensus 67 ~vLelGcG~-G~-~~l~~a~~ga-~v~~~D~ 94 (221)
+|+=+|||. |. ++..+++.|. +++..|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 578899995 54 5666778887 4999885
No 472
>PRK05872 short chain dehydrogenase; Provisional
Probab=71.86 E-value=16 Score=30.27 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=47.1
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++++++|=.|++.|+ ++..+++.|++|++++. .+.++.+.+.+.. ...+.....|..+.+
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~--------------~~~~~~~~~Dv~d~~ 70 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG--------------DDRVLTVVADVTDLA 70 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--------------CCcEEEEEecCCCHH
Confidence 34678999999977654 33445567999998886 3333333222211 123455556766543
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|++|.+--+.
T Consensus 71 ~v~~~~~~~~~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 71 AMQAAAEEAVERFGGIDVVVANAGIA 96 (296)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 321 1125789999876543
No 473
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=71.78 E-value=38 Score=28.86 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=22.6
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ 94 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~ 94 (221)
..++.+||=.|+|. |...+.+|+ .|++ |++++.
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~ 215 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDP 215 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 34677888888763 655555554 5886 888875
No 474
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=71.70 E-value=13 Score=31.07 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=40.7
Q ss_pred CCCeEEEeCCCccHHHHHHHH----hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~----~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++||=.|+ +|.+|..+++ .|++|++++. ++..+........... ..++.+...|..+....
T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~d~~~~ 71 (325)
T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGA-----------KERLKLFKADLLDEGSF 71 (325)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCC-----------CCceEEEeCCCCCchHH
Confidence 4678999984 5666665553 4888877653 2222211111111110 13566666666555433
Q ss_pred cccCCCccEEEEccc
Q 027594 139 KAVAPPFDYIIGTDV 153 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~ 153 (221)
...-...|+|+.+-.
T Consensus 72 ~~~~~~~d~vih~A~ 86 (325)
T PLN02989 72 ELAIDGCETVFHTAS 86 (325)
T ss_pred HHHHcCCCEEEEeCC
Confidence 222235788876543
No 475
>PLN02253 xanthoxin dehydrogenase
Probab=71.60 E-value=12 Score=30.57 Aligned_cols=79 Identities=15% Similarity=0.105 Sum_probs=45.3
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
....++++|=.|+..|+ ++..+++.|++|+++|. ++..+.+...+.. ..++.+...|..+..
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~d~~ 79 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG--------------EPNVCFFHCDVTVED 79 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC--------------CCceEEEEeecCCHH
Confidence 34578899999976543 22334456999999986 3333322222210 135677777776654
Q ss_pred Ccc-------ccCCCccEEEEccc
Q 027594 137 HIK-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~ 153 (221)
... ....+.|+++.+--
T Consensus 80 ~~~~~~~~~~~~~g~id~li~~Ag 103 (280)
T PLN02253 80 DVSRAVDFTVDKFGTLDIMVNNAG 103 (280)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 321 11246899887653
No 476
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=71.58 E-value=14 Score=33.64 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=63.2
Q ss_pred CeEEEeCCCccHHHHH---HHHh---CCEEEEecc-hhhHHHH-HHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 66 KRVIELGAGCGVAGFG---MALL---GCNVITTDQ-IEVLPLL-KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~---~a~~---ga~v~~~D~-~~~l~~~-~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++=+|+|-|-+.-. +|.. --++++++- |.++-.+ ..|.+-.. ++|+++..|.....
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~-------------~~Vtii~~DMR~w~- 434 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD-------------NRVTIISSDMRKWN- 434 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc-------------CeeEEEeccccccC-
Confidence 4688899999955433 3332 235889995 6655444 45555543 67888886655443
Q ss_pred ccccCCCccEEEEccccc---CCcCHHHHHHHHHHhcCCCeEEE
Q 027594 138 IKAVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y---~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
.+..+.|++++ .++- .-+.-+..+.-++++|||+|+.+
T Consensus 435 --ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 435 --APREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred --CchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 22467898874 4443 34567788999999999998754
No 477
>PRK06197 short chain dehydrogenase; Provisional
Probab=71.20 E-value=24 Score=29.31 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=45.9
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.+.++++||=.|+..|+ ++..+++.|++|++++. .+..+.+.+.+..... ..++.+...|..+..
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~d~~ 80 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATP-----------GADVTLQELDLTSLA 80 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCceEEEECCCCCHH
Confidence 34578899999975543 22334456899888875 3333333333332110 134666676666554
Q ss_pred Ccc-------ccCCCccEEEEcccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~ 154 (221)
... ....+.|++|.+--+
T Consensus 81 ~v~~~~~~~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 81 SVRAAADALRAAYPRIDLLINNAGV 105 (306)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCcc
Confidence 321 112468999877543
No 478
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=70.99 E-value=16 Score=28.75 Aligned_cols=42 Identities=26% Similarity=0.284 Sum_probs=28.7
Q ss_pred CCCCCCeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHH
Q 027594 61 SKLKGKRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~-~~l~~a~~ga~v~~~D~-~~~l~~~~ 102 (221)
...+|++|+=+|.|. |. ++..+...|++|+++|. ++.++.+.
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~ 68 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAA 68 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 567899999999984 32 23334456999999997 44444443
No 479
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=70.96 E-value=11 Score=32.03 Aligned_cols=41 Identities=37% Similarity=0.430 Sum_probs=29.6
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~ 102 (221)
..++.+||=+|||. |..++.+|+ .|++|+++|. ++-++.++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 34688999999976 777776664 5889999986 44555443
No 480
>PRK12939 short chain dehydrogenase; Provisional
Probab=70.95 E-value=18 Score=28.68 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=44.3
Q ss_pred CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~----a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+++++|=.|+.. .+|..+ ++.|++|++++. ++.++.....++.. ..++.+...|..+.+
T Consensus 4 ~~~~~~vlItGa~g-~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~ 69 (250)
T PRK12939 4 NLAGKRALVTGAAR-GLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA-------------GGRAHAIAADLADPA 69 (250)
T ss_pred CCCCCEEEEeCCCC-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHH
Confidence 34678999888744 444443 456889988885 44344333333221 135677777776543
Q ss_pred Cccc-------cCCCccEEEEccc
Q 027594 137 HIKA-------VAPPFDYIIGTDV 153 (221)
Q Consensus 137 ~~~~-------~~~~fD~Vi~~d~ 153 (221)
.... ...+.|+|+.+--
T Consensus 70 ~~~~~~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 70 SVQRFFDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 3210 1146899887643
No 481
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=70.95 E-value=8.4 Score=29.96 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=49.4
Q ss_pred eEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCC-------CCCCceEEEEEEecCCC
Q 027594 67 RVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-------DLLGSIQAVELDWGNED 136 (221)
Q Consensus 67 ~vLelGcG~-G~-~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-------~~~~~v~~~~~dw~~~~ 136 (221)
+|-=+|.|- |+ .+..+|..|.+|+++|. ++-++.+++-.. +. ..|+. ....+..+. .++..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~----p~--~E~~l~~ll~~~~~~~~l~~t-~~~~~-- 72 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGEL----PI--YEPGLDELLKENVSAGRLRAT-TDIEE-- 72 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSS----SS---CTTHHHHHHHHHHTTSEEEE-SEHHH--
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccc----cc--cccchhhhhccccccccchhh-hhhhh--
Confidence 455677775 65 45566788999999998 445554432100 00 00000 001233332 12211
Q ss_pred CccccCCCccEEEEc-ccccC------CcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 137 HIKAVAPPFDYIIGT-DVVYA------EHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~-d~~y~------~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.....|+++.+ ++-+. .+.+...++.+.+.++++..+++-..
T Consensus 73 ----ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST 121 (185)
T PF03721_consen 73 ----AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST 121 (185)
T ss_dssp ----HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred ----hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence 12346777554 43333 23467778888888999777666333
No 482
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.88 E-value=21 Score=29.95 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=28.2
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHH
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNV 105 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~ 105 (221)
++|.=||+|. | .++..+++.|.+|++.|. ++.++.++..+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~ 47 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVI 47 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 4677789986 3 455566677889999996 55666666544
No 483
>PRK06138 short chain dehydrogenase; Provisional
Probab=70.59 E-value=13 Score=29.47 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=45.2
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.||..|+- +..+++.|++|++++. .+..+.....+. . ..++.+...|..+....
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~-------------~~~~~~~~~D~~~~~~~ 68 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A-------------GGRAFARQGDVGSAEAV 68 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c-------------CCeEEEEEcCCCCHHHH
Confidence 3678999999865432 2234456899999985 333333333322 1 23467777777665432
Q ss_pred cc-------cCCCccEEEEcccc
Q 027594 139 KA-------VAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~~-------~~~~fD~Vi~~d~~ 154 (221)
.. ...++|+|+.+...
T Consensus 69 ~~~~~~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 69 EALVDFVAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 11 12478999876553
No 484
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=70.58 E-value=33 Score=28.84 Aligned_cols=41 Identities=34% Similarity=0.376 Sum_probs=27.5
Q ss_pred CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027594 62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 62 ~~~~~~vLelGc-G-~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~ 102 (221)
..+|.+||=.|+ | .|...+.+|+ +|++|++++. ++-.+.++
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~ 193 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLK 193 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 446889999997 3 3666666664 5899888774 44444444
No 485
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=70.55 E-value=9.2 Score=32.87 Aligned_cols=42 Identities=33% Similarity=0.404 Sum_probs=32.9
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKR 103 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~~-ga-~v~~~D~-~~~l~~~~~ 103 (221)
..+|.+|.=+|||. |+.++.-|+. |+ +++++|+ ++-++++++
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 34678999999997 9999888764 77 4999997 567776664
No 486
>PRK08226 short chain dehydrogenase; Provisional
Probab=70.52 E-value=21 Score=28.71 Aligned_cols=78 Identities=22% Similarity=0.175 Sum_probs=43.8
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|+..|+- +..+++.|++|++++.+. ..+.++ .+... ..++.+...|..+....
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~-~~~~~-------------~~~~~~~~~Dl~~~~~v 69 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLAD-ELCGR-------------GHRCTAVVADVRDPASV 69 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHH-HHHHh-------------CCceEEEECCCCCHHHH
Confidence 4678999999865532 233345699999998643 222222 22211 13456666666654332
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....+.|+|+.+..+
T Consensus 70 ~~~~~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 70 AAAIKRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 1 112467998887554
No 487
>PRK06114 short chain dehydrogenase; Provisional
Probab=70.22 E-value=27 Score=27.95 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=46.4
Q ss_pred CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~----~a~~ga~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
.++++++|=.|++.| +|.. +++.|++|+++|. ++ .++.+.+.+...+ .++.+...|..+.
T Consensus 5 ~~~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~-------------~~~~~~~~D~~~~ 70 (254)
T PRK06114 5 DLDGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG-------------RRAIQIAADVTSK 70 (254)
T ss_pred CCCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC-------------CceEEEEcCCCCH
Confidence 357889999997665 3333 3456899999885 22 3344433333221 3456666666554
Q ss_pred CCcc-------ccCCCccEEEEccccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
.... ....+.|++|.+.-+.
T Consensus 71 ~~i~~~~~~~~~~~g~id~li~~ag~~ 97 (254)
T PRK06114 71 ADLRAAVARTEAELGALTLAVNAAGIA 97 (254)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3321 1124679998876554
No 488
>PRK07677 short chain dehydrogenase; Provisional
Probab=70.11 E-value=21 Score=28.57 Aligned_cols=75 Identities=27% Similarity=0.302 Sum_probs=42.8
Q ss_pred CCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-
Q 027594 65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 139 (221)
Q Consensus 65 ~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~- 139 (221)
++++|=.|++.|+ ++..+++.|++|++++. ++.++.+...+... ..++.+...|..+.....
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~ 67 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF-------------PGQVLTVQMDVRNPEDVQK 67 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHHHHH
Confidence 4688888987764 23334566999999885 33444333333221 134666776665543221
Q ss_pred ------ccCCCccEEEEcc
Q 027594 140 ------AVAPPFDYIIGTD 152 (221)
Q Consensus 140 ------~~~~~fD~Vi~~d 152 (221)
....+.|+|+.+.
T Consensus 68 ~~~~~~~~~~~id~lI~~a 86 (252)
T PRK07677 68 MVEQIDEKFGRIDALINNA 86 (252)
T ss_pred HHHHHHHHhCCccEEEECC
Confidence 1124679988764
No 489
>PRK07985 oxidoreductase; Provisional
Probab=70.06 E-value=60 Score=26.84 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=44.9
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch---hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI---EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~---~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..+++++|=.|++.|+ ++..+++.|++|++++.+ +..+.+...+...+ .++.+...|..+.
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~ 112 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG-------------RKAVLLPGDLSDE 112 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC-------------CeEEEEEccCCCH
Confidence 4678899999976553 344455679998887642 23333333222221 3456666676654
Q ss_pred CCcc-------ccCCCccEEEEccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~ 153 (221)
+... ....+.|+++.+.-
T Consensus 113 ~~~~~~~~~~~~~~g~id~lv~~Ag 137 (294)
T PRK07985 113 KFARSLVHEAHKALGGLDIMALVAG 137 (294)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3221 11246788887643
No 490
>PRK05650 short chain dehydrogenase; Provisional
Probab=69.89 E-value=12 Score=30.36 Aligned_cols=76 Identities=18% Similarity=0.085 Sum_probs=42.3
Q ss_pred CeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc--
Q 027594 66 KRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-- 139 (221)
Q Consensus 66 ~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~-- 139 (221)
++||=.|+..|+ ++..+++.|++|++++. .+-++.+...+...+ .++.+..+|+.+.....
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~D~~~~~~~~~~ 67 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG-------------GDGFYQRCDVRDYSQLTAL 67 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEccCCCHHHHHHH
Confidence 367777865543 23334556899999886 333343333333222 34666777776543321
Q ss_pred -----ccCCCccEEEEcccc
Q 027594 140 -----AVAPPFDYIIGTDVV 154 (221)
Q Consensus 140 -----~~~~~fD~Vi~~d~~ 154 (221)
....++|++|.+--.
T Consensus 68 ~~~i~~~~~~id~lI~~ag~ 87 (270)
T PRK05650 68 AQACEEKWGGIDVIVNNAGV 87 (270)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 112468999887543
No 491
>PRK07576 short chain dehydrogenase; Provisional
Probab=69.74 E-value=22 Score=28.79 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=42.5
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++++|=.|++.|+ +...++..|++|+++|. ++.++.....+... ..++.+..+|..+....
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~i 73 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA-------------GPEGLGVSADVRDYAAV 73 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-------------CCceEEEECCCCCHHHH
Confidence 467899999964443 22234456999999986 44333332222221 12455666666554322
Q ss_pred c-------ccCCCccEEEEcc
Q 027594 139 K-------AVAPPFDYIIGTD 152 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d 152 (221)
. ....+.|++|.+.
T Consensus 74 ~~~~~~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 74 EAAFAQIADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 1 1124679998654
No 492
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=69.71 E-value=40 Score=24.56 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=19.7
Q ss_pred eEEEeCCCc-cH-HHHHHHHhCC-EEEEecc
Q 027594 67 RVIELGAGC-GV-AGFGMALLGC-NVITTDQ 94 (221)
Q Consensus 67 ~vLelGcG~-G~-~~l~~a~~ga-~v~~~D~ 94 (221)
+|+=+|||. |. ++..+++.|. +++.+|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcC
Confidence 477889984 53 4555667786 5888884
No 493
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=69.69 E-value=21 Score=30.37 Aligned_cols=99 Identities=23% Similarity=0.181 Sum_probs=50.4
Q ss_pred CCCCCeEEEeCCCc--cHHHHHHHH-hCCEEEEec-chhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGC--GVAGFGMAL-LGCNVITTD-QIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~--G~~~l~~a~-~ga~v~~~D-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+|.+||=.|+.. |..++.+|+ +|+.++++- .++-.+.+++ .+. ..-+.+...||.+...
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGA-----------d~vi~y~~~~~~~~v~ 204 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGA-----------DHVINYREEDFVEQVR 204 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCC-----------CEEEcCCcccHHHHHH
Confidence 34588999999544 677777775 476654444 3432333332 221 0112233333332211
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.......+|+|+-. + -.+.+......|+++|+++....
T Consensus 205 ~~t~g~gvDvv~D~--v-----G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 205 ELTGGKGVDVVLDT--V-----GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred HHcCCCCceEEEEC--C-----CHHHHHHHHHHhccCCEEEEEec
Confidence 11123469999843 2 12344445566777788766443
No 494
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.67 E-value=22 Score=28.12 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=42.2
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|+..|+- +..+++.|++|+.+|. ++.++.+.+.+...+ .++.....|..+....
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~ 69 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG-------------TEVRGYAANVTDEEDV 69 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEcCCCCHHHH
Confidence 4678999999754432 2233456889999886 333433333333221 2455556555443221
Q ss_pred c-------ccCCCccEEEEccc
Q 027594 139 K-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~ 153 (221)
. ....++|.|+.+..
T Consensus 70 ~~~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 70 EATFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 0 11146798887654
No 495
>PRK06940 short chain dehydrogenase; Provisional
Probab=69.66 E-value=53 Score=26.79 Aligned_cols=76 Identities=24% Similarity=0.293 Sum_probs=42.4
Q ss_pred CCeEEEeCCCccHHHHHHHH---hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-
Q 027594 65 GKRVIELGAGCGVAGFGMAL---LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 139 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~---~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~- 139 (221)
++.+|=-|+| | +|..+++ .|++|+++|. ++.++.+.+.+...+ .++.+..+|..+.+...
T Consensus 2 ~k~~lItGa~-g-IG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~i~~ 66 (275)
T PRK06940 2 KEVVVVIGAG-G-IGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG-------------FDVSTQEVDVSSRESVKA 66 (275)
T ss_pred CCEEEEECCC-h-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEEeecCCHHHHHH
Confidence 3566766764 4 5555443 4788999986 333433333332211 35667777776654321
Q ss_pred -----ccCCCccEEEEccccc
Q 027594 140 -----AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 140 -----~~~~~fD~Vi~~d~~y 155 (221)
....+.|+++.+--+.
T Consensus 67 ~~~~~~~~g~id~li~nAG~~ 87 (275)
T PRK06940 67 LAATAQTLGPVTGLVHTAGVS 87 (275)
T ss_pred HHHHHHhcCCCCEEEECCCcC
Confidence 1124689998876544
No 496
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=69.56 E-value=24 Score=30.16 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=47.5
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++.+||=.|+|. |...+.+|+ +|++ |++++. ++..+.+++ .+.. .-+.....+|......
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~-----------~v~~~~~~~~~~~l~~ 250 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT-----------HTVNAAKEDAVAAIRE 250 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc-----------eEecCCcccHHHHHHH
Confidence 3567888777653 555554553 5777 888875 333343322 1110 0001001111100000
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
......+|+|+.+ +... ..+..+.++++++|+++..
T Consensus 251 ~~~~~~~d~vld~--vg~~----~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 251 ITGGRGVDVVVEA--LGKP----ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred HhCCCCCCEEEEe--CCCH----HHHHHHHHHHhcCCEEEEE
Confidence 1123568999843 3321 2556667788888887654
No 497
>PRK06914 short chain dehydrogenase; Provisional
Probab=69.40 E-value=22 Score=28.89 Aligned_cols=80 Identities=21% Similarity=0.179 Sum_probs=44.4
Q ss_pred CCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++++|=.|+..|+- ...++..|++|++++. ++.++.....+...+. ..++.+...|..+.....
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~d~~~~~ 70 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNL-----------QQNIKVQQLDVTDQNSIH 70 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCceeEEecCCCCHHHHH
Confidence 356889999765532 2234556999998875 4444333332222111 235677777776654321
Q ss_pred ------ccCCCccEEEEcccc
Q 027594 140 ------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 140 ------~~~~~fD~Vi~~d~~ 154 (221)
..-.+.|+|+.+...
T Consensus 71 ~~~~~~~~~~~id~vv~~ag~ 91 (280)
T PRK06914 71 NFQLVLKEIGRIDLLVNNAGY 91 (280)
T ss_pred HHHHHHHhcCCeeEEEECCcc
Confidence 112467888877543
No 498
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=69.37 E-value=15 Score=33.32 Aligned_cols=42 Identities=29% Similarity=0.237 Sum_probs=31.9
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHH
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~ 107 (221)
++|-=||+|+ | -++..+++.|.+|++.|. ++.++.++.+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~ 50 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEA 50 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4688899997 5 466677788999999997 5677776665554
No 499
>PLN02740 Alcohol dehydrogenase-like
Probab=69.02 E-value=12 Score=32.32 Aligned_cols=41 Identities=29% Similarity=0.248 Sum_probs=29.5
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~ 102 (221)
..+|.+||=+|||. |..++.+|+ +|+ +|+++|. ++-++.++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~ 240 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGK 240 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH
Confidence 44688999999886 777776665 588 5999986 44555554
No 500
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=68.86 E-value=45 Score=27.60 Aligned_cols=88 Identities=25% Similarity=0.296 Sum_probs=49.1
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a-~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++.+||=.|+|. |...+.+| .+|++|++++. ++..+.+++ .+. .. ..++...
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~------------~~----~~~~~~~--- 209 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGV------------ET----VLPDEAE--- 209 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCC------------cE----EeCcccc---
Confidence 34677888888764 54444444 35889888875 555555553 221 00 0111111
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.....+|+++-+ .-. ...+....+.++++|.+++
T Consensus 210 -~~~~~~d~vid~--~g~----~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 210 -SEGGGFDVVVEA--TGS----PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred -ccCCCCCEEEEC--CCC----hHHHHHHHHHhhcCCEEEE
Confidence 124568998853 211 2345566667888888765
Done!