BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027596
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NT2|B Chain B, Crystal Structure Of FibrillarinNOP5P COMPLEX
Length = 258
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 17/100 (17%)
Query: 119 GKVYYGFVTPRGLAVFKPGLEVEVPKEERYKVGLTDFVHAMMSVMVFVAIAFSDFRVT-- 176
GK YY + LAV + +E E+ +E+RY V L + + + + D R
Sbjct: 47 GKDYYRILRKTALAVSEKMVEKELRREDRYVVALVKALEEIDESINMLNEKLEDIRAVKE 106
Query: 177 --------------RCLFPGHEKEMDQVMESF-PLMVGVI 201
R L E+E+++VME P M ++
Sbjct: 107 SEITEKFEKKIRELRELRRDVEREIEEVMEKIAPNMTELV 146
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R+ PA G + VA+GVQ+ + + + L + +
Sbjct: 333 IYPAVDPLASTSRILS--PA-------VVGEEHYRVARGVQQVLQRYNDLQDII------ 377
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E S + L++ + FH + F G GK T RG
Sbjct: 378 -------AILGMDELSDEDKLIVARARKIQRFLSQPFHVAEQFTGMPGKYVPVKETVRGF 430
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
G +P+E Y VG D
Sbjct: 431 KEILEGKHDNLPEEAFYMVGTID 453
>pdb|3G56|A Chain A, Structure Of The Macrolide Biosensor Protein, Mphr(A)
pdb|3G56|B Chain B, Structure Of The Macrolide Biosensor Protein, Mphr(A)
pdb|3FRQ|A Chain A, Structure Of The Macrolide Biosensor Protein, Mphr(a),
With Erythromcyin
pdb|3FRQ|B Chain B, Structure Of The Macrolide Biosensor Protein, Mphr(a),
With Erythromcyin
Length = 195
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 14/78 (17%)
Query: 42 RKRRAVAKGVQKTISKTSMLVNFLPTGTLLTFEMILPSVYG----NGECSPVNTLMIHVL 97
++ RAV +G++K LP G E++L SV P L HVL
Sbjct: 122 QRNRAVVEGIRKR----------LPPGAPAAAELLLHSVIAGATMQWAVDPDGELADHVL 171
Query: 98 LGLCALSCFFFHFTDSFR 115
+ A+ C F D F+
Sbjct: 172 AQIAAILCLMFPEHDDFQ 189
>pdb|4EXM|A Chain A, The Crystal Structure Of An Engineered Phage Lysin
Containing The Binding Domain Of Pesticin And The
Killing Domain Of T4-Lysozyme
pdb|4EXM|B Chain B, The Crystal Structure Of An Engineered Phage Lysin
Containing The Binding Domain Of Pesticin And The
Killing Domain Of T4-Lysozyme
pdb|4EXM|C Chain C, The Crystal Structure Of An Engineered Phage Lysin
Containing The Binding Domain Of Pesticin And The
Killing Domain Of T4-Lysozyme
pdb|4EXM|D Chain D, The Crystal Structure Of An Engineered Phage Lysin
Containing The Binding Domain Of Pesticin And The
Killing Domain Of T4-Lysozyme
Length = 347
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 1 MEQHQEGIGIKIYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSM 60
+E QE G+K+Y EG+ + L + + + R R +A S
Sbjct: 114 VETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQ 173
Query: 61 LVNFLPTG-TLLTFEMI 76
L FL ++ FEM+
Sbjct: 174 LKEFLRRSVNIVIFEML 190
>pdb|4EPI|A Chain A, The Crystal Structure Of Pesticin-T4 Lysozyme Hybrid
Stabilized By Engineered Disulfide Bonds
Length = 330
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 1 MEQHQEGIGIKIYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSM 60
+E QE G+K+Y EG+ + L + + + R R +A S
Sbjct: 97 VETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQ 156
Query: 61 LVNFLPTG-TLLTFEMI 76
L FL ++ FEM+
Sbjct: 157 LKEFLRRSVNIVCFEML 173
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 9 GIKIYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNF 64
G +N PR AD +P EP + G +KGV + + +T + ++
Sbjct: 439 GQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSY 494
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 23/96 (23%)
Query: 93 MIH-VLLGLCALSCFFF-------------HFTDSFRGPDGKVYYGFVTPR--GLAVFKP 136
++H VLLG +SCFFF +F +SF Y+ F++ GL + P
Sbjct: 171 IVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESF-------YFCFISLSTIGLGDYVP 223
Query: 137 GLEVEVPKEERYKVGLTDFVHAMMSVMVFVAIAFSD 172
G E YK+G+T ++ + M+ V F +
Sbjct: 224 GEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCE 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,877,697
Number of Sequences: 62578
Number of extensions: 283605
Number of successful extensions: 672
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 7
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)