BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027596
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B9K7U1|ATPB_THENN ATP synthase subunit beta OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=atpD PE=3 SV=1
Length = 468
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 16/137 (11%)
Query: 30 PAEPSSGVHQP---GRKRRAVAKGVQKTISKTSMLVNFLPTGTLLTFEMILPSVYGNGEC 86
P + SS + P GR+ VA+GVQ+ + + L + + ++ G E
Sbjct: 343 PLDSSSKILDPAVVGREHYEVARGVQEVLQRYKDLQDII-------------AILGVEEL 389
Query: 87 SPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGLAVFKPGLEVEVPKEE 146
SP + L++H + FH + F G GK T RG G +VP++
Sbjct: 390 SPEDKLVVHRARRIQRFLSQPFHVAERFTGRPGKYVPLEETIRGFKEILDGKLDDVPEQA 449
Query: 147 RYKVGLTDFVHAMMSVM 163
G D V M
Sbjct: 450 FLMAGTIDEVKERAKEM 466
>sp|B1LBB9|ATPB_THESQ ATP synthase subunit beta OS=Thermotoga sp. (strain RQ2) GN=atpD
PE=3 SV=1
Length = 468
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 16/137 (11%)
Query: 30 PAEPSSGVHQP---GRKRRAVAKGVQKTISKTSMLVNFLPTGTLLTFEMILPSVYGNGEC 86
P + SS + P GR+ VA+GVQ+ + + L + + ++ G E
Sbjct: 343 PLDSSSKILDPAIVGREHYEVARGVQEVLQRYKDLQDII-------------AILGVEEL 389
Query: 87 SPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGLAVFKPGLEVEVPKEE 146
SP + L++H + FH + F G G+ T RG G +VP++
Sbjct: 390 SPEDKLVVHRARRIQRFLSQPFHVAERFTGRPGRYVPIEETIRGFKEILDGKLDDVPEQA 449
Query: 147 RYKVGLTDFVHAMMSVM 163
G D V M
Sbjct: 450 FLMAGNIDEVKERAKEM 466
>sp|A5ILX2|ATPB_THEP1 ATP synthase subunit beta OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=atpD PE=3 SV=1
Length = 468
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 16/137 (11%)
Query: 30 PAEPSSGVHQP---GRKRRAVAKGVQKTISKTSMLVNFLPTGTLLTFEMILPSVYGNGEC 86
P + SS + P GR+ VA+GVQ+ + + L + + ++ G E
Sbjct: 343 PLDSSSKILDPAIVGREHYEVARGVQEVLQRYKDLQDII-------------AILGVEEL 389
Query: 87 SPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGLAVFKPGLEVEVPKEE 146
SP + L++H + FH + F G G+ T RG G +VP++
Sbjct: 390 SPEDKLVVHRARRIQRFLSQPFHVAERFTGRPGRYVPIEETIRGFKEILDGKLDDVPEQA 449
Query: 147 RYKVGLTDFVHAMMSVM 163
G D V M
Sbjct: 450 FLMAGNIDEVKERAKEM 466
>sp|O50550|ATPB_THEMA ATP synthase subunit beta OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=atpD PE=3 SV=1
Length = 468
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 16/137 (11%)
Query: 30 PAEPSSGVHQP---GRKRRAVAKGVQKTISKTSMLVNFLPTGTLLTFEMILPSVYGNGEC 86
P + SS + P GR+ VA+GVQ+ + + L + + ++ G E
Sbjct: 343 PLDSSSKILDPAIVGREHYEVARGVQEVLQRYKDLQDII-------------AILGVEEL 389
Query: 87 SPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGLAVFKPGLEVEVPKEE 146
SP + L++H + FH + F G G+ T RG G +VP++
Sbjct: 390 SPEDKLVVHRARRIQRFLSQPFHVAERFTGRPGRYVPIEETIRGFKEILDGKLDDVPEQA 449
Query: 147 RYKVGLTDFVHAMMSVM 163
G D V M
Sbjct: 450 FLMAGNIDEVKERAKEM 466
>sp|Q9YD97|SYL_AERPE Leucine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=leuS PE=3 SV=1
Length = 959
Score = 34.3 bits (77), Expect = 0.68, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 5 QEGIGIKIYNATPPEGSTPRMADALPAEPS 34
QE +G+K+ T +G +PR A+ALP P+
Sbjct: 922 QEELGVKVVVETEEDGGSPRRANALPGRPA 951
>sp|A5CYE2|ATPB_PELTS ATP synthase subunit beta OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=atpD PE=3 SV=1
Length = 470
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 22/140 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R+ D L G + A+GVQK + + L + +
Sbjct: 339 IYPAVDPLDSTSRILDPLVV---------GNEHYQTARGVQKVLQRYKELQDII------ 383
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E S + L++ L FH ++F G GK T RG
Sbjct: 384 -------AILGMEELSDDDKLVVARARKLQRFLSQPFHVAEAFTGMSGKFVPIKETIRGF 436
Query: 132 AVFKPGLEVEVPKEERYKVG 151
G ++P++ Y VG
Sbjct: 437 QEILDGKHDDLPEDAFYMVG 456
>sp|Q8K9U4|TRUA_BUCAP tRNA pseudouridine synthase A OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=truA PE=3 SV=1
Length = 263
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 118 DGKVYYGFVTPRGLAVFKPGLEVEVPKEERYKV-----GLTDF-VHAMMSVMVFVAIAF- 170
DG Y+G+ + +GL+ + +E + K ++V G TD VH++ V+ F +I+F
Sbjct: 16 DGSYYHGWQSQKGLSTIQSEIEKALSKIANHQVNVICAGRTDSGVHSIGQVIHFTSISFR 75
Query: 171 SDF 173
SDF
Sbjct: 76 SDF 78
>sp|Q5UE96|KCNK1_RABIT Potassium channel subfamily K member 1 OS=Oryctolagus cuniculus
GN=KCNK1 PE=2 SV=1
Length = 336
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 27/118 (22%)
Query: 93 MIH-VLLGLCALSCFFF-------------HFTDSFRGPDGKVYYGFVTPR--GLAVFKP 136
++H VLLGL +SCFFF +F +SF Y+ F++ GL + P
Sbjct: 181 IVHAVLLGLITVSCFFFIPAAVFSVLEDDWNFLESF-------YFCFISLSTIGLGDYVP 233
Query: 137 GLEVEVPKEERYKVGLTDFVHAMMSVMVFVAIAFSDF----RVTRCLFPGHEKEMDQV 190
G E YK+G+T ++ + M+ V F + + + + +K+ DQV
Sbjct: 234 GEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDKDEDQV 291
>sp|B0THN2|ATPB_HELMI ATP synthase subunit beta OS=Heliobacterium modesticaldum (strain
ATCC 51547 / Ice1) GN=atpD PE=3 SV=1
Length = 471
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 22/140 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R+ D H G + +VA+GVQK + + L + +
Sbjct: 341 IYPAVDPLDSTSRILDP---------HVVGDEHYSVARGVQKILQRYKELQDII------ 385
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E S + +++ + FH ++F G GK + RG
Sbjct: 386 -------AILGMDELSEDDKIVVARARKIQRFLSQPFHVAEAFTGTPGKFVPLKESIRGF 438
Query: 132 AVFKPGLEVEVPKEERYKVG 151
G ++P+ Y VG
Sbjct: 439 KEILEGKHDDLPESAFYMVG 458
>sp|A9HY42|ATPB_BORPD ATP synthase subunit beta OS=Bordetella petrii (strain ATCC BAA-461
/ DSM 12804 / CCUG 43448) GN=atpD PE=3 SV=1
Length = 466
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P S+ R D G + AVA+GVQ+T+ + L + +
Sbjct: 336 IYPAVDPLDSSSRQLDP---------QVVGEEHYAVARGVQQTLQRYKELRDII------ 380
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E SP + + + FH + F G GK T RG
Sbjct: 381 -------AILGMDELSPDDKQAVARARKIQRFLSQPFHVAEVFTGSPGKYVPLAETIRGF 433
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 434 KMIVDGECDALPEQAFYMVGTID 456
>sp|Q46VY0|ATPB_CUPPJ ATP synthase subunit beta OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=atpD PE=3 SV=1
Length = 467
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R D G++ VA+ VQ+T+ + L + +
Sbjct: 337 IYPAVDPLDSTSRQMDP---------QVVGQEHYNVARAVQQTLQRYKELRDII------ 381
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E SP + + ++ + FH + F G GK T RG
Sbjct: 382 -------AILGMDELSPEDKMAVNRARKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGF 434
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 435 KMLVDGECDHLPEQAFYMVGSID 457
>sp|A1K1S2|ATPB_AZOSB ATP synthase subunit beta OS=Azoarcus sp. (strain BH72) GN=atpD
PE=3 SV=1
Length = 466
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 22/140 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R D L G + +VA+ VQ+T+ K L + +
Sbjct: 336 IYPAVDPLDSTSRQLDPLVV---------GEEHYSVARAVQQTLQKYKELRDII------ 380
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E SP + L + + FH + F G GK T G
Sbjct: 381 -------AILGMDELSPDDKLAVARARKIQRFLSQPFHVAEVFTGSPGKYVSLKDTIAGF 433
Query: 132 AVFKPGLEVEVPKEERYKVG 151
G +P++ Y VG
Sbjct: 434 KAIVNGEYDHLPEQAFYMVG 453
>sp|Q0P5A0|KCNK1_BOVIN Potassium channel subfamily K member 1 OS=Bos taurus GN=KCNK1 PE=2
SV=1
Length = 336
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 27/118 (22%)
Query: 93 MIH-VLLGLCALSCFFF-------------HFTDSFRGPDGKVYYGFVTPR--GLAVFKP 136
++H VLLG+ +SCFFF +F +SF Y+ F++ GL + P
Sbjct: 181 IVHAVLLGVVTVSCFFFIPAAVFSVLEDDWNFLESF-------YFCFISLSTIGLGDYVP 233
Query: 137 GLEVEVPKEERYKVGLTDFVHAMMSVMVFVAIAFSDF----RVTRCLFPGHEKEMDQV 190
G E YK+G+T ++ + M+ V F + + + + +KE DQ+
Sbjct: 234 GEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDKEEDQM 291
>sp|Q5RD07|KCNK1_PONAB Potassium channel subfamily K member 1 OS=Pongo abelii GN=KCNK1
PE=2 SV=1
Length = 336
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 26/114 (22%)
Query: 96 VLLGLCALSCFFF-------------HFTDSFRGPDGKVYYGFVTPR--GLAVFKPGLEV 140
VLLG +SCFFF +F +SF Y+ F++ GL + PG
Sbjct: 185 VLLGFVTVSCFFFIPAAVFSVLEDDWNFLESF-------YFCFISLSTIGLGDYVPGEGY 237
Query: 141 EVPKEERYKVGLTDFVHAMMSVMVFVAIAFSDF----RVTRCLFPGHEKEMDQV 190
E YK+G+T ++ + M+ V F + + + + +K+ DQV
Sbjct: 238 NQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDKDEDQV 291
>sp|O00180|KCNK1_HUMAN Potassium channel subfamily K member 1 OS=Homo sapiens GN=KCNK1
PE=1 SV=1
Length = 336
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 27/118 (22%)
Query: 93 MIH-VLLGLCALSCFFF-------------HFTDSFRGPDGKVYYGFVTPR--GLAVFKP 136
++H VLLG +SCFFF +F +SF Y+ F++ GL + P
Sbjct: 181 IVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESF-------YFCFISLSTIGLGDYVP 233
Query: 137 GLEVEVPKEERYKVGLTDFVHAMMSVMVFVAIAFSDF----RVTRCLFPGHEKEMDQV 190
G E YK+G+T ++ + M+ V F + + + + +K+ DQV
Sbjct: 234 GEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDKDEDQV 291
>sp|Q9Z2T2|KCNK1_RAT Potassium channel subfamily K member 1 OS=Rattus norvegicus
GN=Kcnk1 PE=2 SV=1
Length = 336
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 27/118 (22%)
Query: 93 MIH-VLLGLCALSCFFF-------------HFTDSFRGPDGKVYYGFVTPR--GLAVFKP 136
++H VLLG +SCFFF +F +SF Y+ F++ GL + P
Sbjct: 181 IVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESF-------YFCFISLSTIGLGDYVP 233
Query: 137 GLEVEVPKEERYKVGLTDFVHAMMSVMVFVAIAFSDF----RVTRCLFPGHEKEMDQV 190
G E YK+G+T ++ + M+ V F + + + + +K+ DQV
Sbjct: 234 GEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDKDEDQV 291
>sp|A1TJ41|ATPB_ACIAC ATP synthase subunit beta OS=Acidovorax citrulli (strain AAC00-1)
GN=atpD PE=3 SV=1
Length = 476
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R D G + VA+GVQ T+ + L + +
Sbjct: 346 IYPAVDPLDSTSRQLDP---------QVVGEEHYQVARGVQGTLQRYKELRDII------ 390
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E +P + L + + FH + F G GK T RG
Sbjct: 391 -------AILGMDELAPEDKLAVARARKIQRFLSQPFHVAEVFTGSPGKYVPLAETIRGF 443
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 444 KMIVAGECDHLPEQAFYMVGTID 466
>sp|Q13SQ2|ATPB2_BURXL ATP synthase subunit beta 2 OS=Burkholderia xenovorans (strain
LB400) GN=atpD2 PE=3 SV=1
Length = 464
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R D + G + ++ +GVQ+T+ + L + +
Sbjct: 334 IYPAVDPLDSTSRQIDP---------NVIGEEHYSITRGVQQTLQRYKELRDII------ 378
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E +P + L + + FH + F G GK T RG
Sbjct: 379 -------AILGMDELAPEDKLAVARARKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGF 431
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 432 KMIVEGECDHLPEQAFYMVGTID 454
>sp|Q7W3B0|ATPB_BORPA ATP synthase subunit beta OS=Bordetella parapertussis (strain 12822
/ ATCC BAA-587 / NCTC 13253) GN=atpD PE=3 SV=1
Length = 466
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P S+ R D G + VA+GVQ+T+ + L + +
Sbjct: 336 IYPAVDPLDSSSRQLDP---------QVVGEEHYQVARGVQQTLQRYKELRDII------ 380
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E SP + + + FH + F G GK T RG
Sbjct: 381 -------AILGMDELSPEDKQAVARARKIQRFLSQPFHVAEVFTGSPGKYVSLAETIRGF 433
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 434 KMIVDGECDALPEQAFYMVGTID 456
>sp|Q7WEM9|ATPB_BORBR ATP synthase subunit beta OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=atpD PE=3 SV=1
Length = 466
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P S+ R D G + VA+GVQ+T+ + L + +
Sbjct: 336 IYPAVDPLDSSSRQLDP---------QVVGEEHYQVARGVQQTLQRYKELRDII------ 380
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E SP + + + FH + F G GK T RG
Sbjct: 381 -------AILGMDELSPEDKQAVARARKIQRFLSQPFHVAEVFTGSPGKYVSLAETIRGF 433
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 434 KMIVDGECDALPEQAFYMVGTID 456
>sp|A7HIX7|ATPB_ANADF ATP synthase subunit beta OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=atpD PE=3 SV=1
Length = 481
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 22/142 (15%)
Query: 10 IKIYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGT 69
I IY A P ST R+ D L G + VA+ VQ+T+ + L + +
Sbjct: 347 IGIYPAVDPLDSTSRILDPLVV---------GAEHYQVAREVQETLQRYKDLQDII---- 393
Query: 70 LLTFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPR 129
++ G E S + L + + FH + F G GK T R
Sbjct: 394 ---------AILGMDELSEDDKLTVARARKVQRFLSQPFHVAEQFTGNPGKYVELADTIR 444
Query: 130 GLAVFKPGLEVEVPKEERYKVG 151
G G ++P++ Y VG
Sbjct: 445 GFKEIVEGKHDDLPEQAFYMVG 466
>sp|Q0K5M7|ATPB_CUPNH ATP synthase subunit beta OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=atpD PE=3 SV=1
Length = 467
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R D G + VA+ VQ+T+ + L + +
Sbjct: 337 IYPAVDPLDSTSRQLDP---------QVVGTEHYEVARRVQQTLQRYKELRDII------ 381
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E SP + L ++ + FH + F G GK T RG
Sbjct: 382 -------AILGMDELSPEDKLAVNRARKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGF 434
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 435 KMLVDGECDHLPEQAFYMVGSID 457
>sp|A1WF58|ATPB_VEREI ATP synthase subunit beta OS=Verminephrobacter eiseniae (strain
EF01-2) GN=atpD PE=3 SV=1
Length = 471
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R D + G++ VA+ VQ T+ + L + +
Sbjct: 341 IYPAVDPLDSTSRQLDP---------NVVGQEHYNVARAVQGTLQRYKELRDII------ 385
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E +P + L + + FH + F G GK T RG
Sbjct: 386 -------AILGMDELAPEDKLAVARARKIQRFLSQPFHVAEVFTGSPGKYVPLSETIRGF 438
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 439 KMIVNGEADHLPEQAFYMVGTID 461
>sp|A4SUT4|ATPB_POLSQ ATP synthase subunit beta OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=atpD PE=3 SV=1
Length = 466
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R D G++ VA+ VQ T+ + L + +
Sbjct: 337 IYPAVDPLDSTSRQLDP---------QVVGQEHYEVARDVQMTLQRYKELRDII------ 381
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E SP + L + + FH + F G GK T RG
Sbjct: 382 -------AILGMDELSPEDKLAVSRARKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGF 434
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 435 KMICSGELDHLPEQAFYMVGSID 457
>sp|Q2KU36|ATPB_BORA1 ATP synthase subunit beta OS=Bordetella avium (strain 197N) GN=atpD
PE=3 SV=1
Length = 466
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P S+ R D G + VA+GVQ+T+ + L + +
Sbjct: 336 IYPAVDPLDSSSRQLDP---------QVVGEEHYQVARGVQQTLQRYKELRDII------ 380
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E SP + + + FH + F G GK T RG
Sbjct: 381 -------AILGMDELSPEDKQAVARARKIQRFLSQPFHVAEVFTGSPGKYVPLAETIRGF 433
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 434 KMIVEGECDALPEQAFYMVGTID 456
>sp|B1XSD4|ATPB_POLNS ATP synthase subunit beta OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=atpD PE=3 SV=1
Length = 466
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R D G++ VA+ VQ T+ + L + +
Sbjct: 337 IYPAVDPLDSTSRQLDP---------QVVGQEHYEVARDVQMTLQRYKELRDII------ 381
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E SP + L + + FH + F G GK T RG
Sbjct: 382 -------AILGMDELSPEDKLAVSRARKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGF 434
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 435 KMICSGELDHLPEQAFYMVGSID 457
>sp|Q8R454|KCNK1_CAVPO Potassium channel subfamily K member 1 OS=Cavia porcellus GN=KCNK1
PE=2 SV=1
Length = 336
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 27/118 (22%)
Query: 93 MIH-VLLGLCALSCFFF-------------HFTDSFRGPDGKVYYGFVTPR--GLAVFKP 136
++H V+LG +SCFFF +F +SF Y+ F++ GL + P
Sbjct: 181 IVHAVVLGFVTVSCFFFIPAAVFSVLEDDWNFLESF-------YFCFISLSTIGLGDYVP 233
Query: 137 GLEVEVPKEERYKVGLTDFVHAMMSVMVFVAIAFSDF----RVTRCLFPGHEKEMDQV 190
G E YK+G+T ++ + M+ V F + + + + +K+ DQV
Sbjct: 234 GEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDKDEDQV 291
>sp|B3R7L5|ATPB_CUPTR ATP synthase subunit beta OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=atpD PE=3 SV=1
Length = 467
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R D G + VA+ VQ+T+ + L + +
Sbjct: 337 IYPAVDPLDSTSRQLDP---------QVVGTEHYEVARRVQQTLQRYKELRDII------ 381
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E SP + L + + FH + F G GK T RG
Sbjct: 382 -------AILGMDELSPEDKLAVSRARKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGF 434
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 435 KMLVDGECDHLPEQAFYMVGSID 457
>sp|Q1LHL0|ATPB_RALME ATP synthase subunit beta OS=Ralstonia metallidurans (strain CH34 /
ATCC 43123 / DSM 2839) GN=atpD PE=3 SV=1
Length = 467
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R D G + VA+ VQ+T+ + L + +
Sbjct: 337 IYPAVDPLDSTSRQLDP---------QVVGTEHYEVARRVQQTLQRYKELRDII------ 381
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E SP + L + + FH + F G GK T RG
Sbjct: 382 -------AILGMDELSPEDKLAVSRARKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGF 434
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 435 KMLVDGECDHLPEQAFYMVGSID 457
>sp|Q3A946|ATPB_CARHZ ATP synthase subunit beta OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=atpD PE=3 SV=1
Length = 473
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 22/145 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R+ D H G + VA+GVQ+ + + L + +
Sbjct: 340 IYPAVDPLDSTSRILDP---------HIVGEEHYQVARGVQRVLQRYKELQDII------ 384
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E S + L++ L F ++F G GK T RG
Sbjct: 385 -------AILGMDELSDEDKLIVARARKLQRFLSQPFTVAEAFTGRPGKYVPVKETIRGF 437
Query: 132 AVFKPGLEVEVPKEERYKVGLTDFV 156
G ++P+ Y G D V
Sbjct: 438 KEILEGKHDDIPETCFYMAGTIDEV 462
>sp|B8F774|ATPB_HAEPS ATP synthase subunit beta OS=Haemophilus parasuis serovar 5 (strain
SH0165) GN=atpD PE=3 SV=1
Length = 457
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 22/145 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R D L G++ VA+GVQKT+ + L + +
Sbjct: 328 IYPAIDPLDSTSRQLDPLVV---------GQEHYDVARGVQKTLQRYKELKDII------ 372
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E S + L++ + FH + F GK T RG
Sbjct: 373 -------AILGMDELSEDDKLVVARARKIERFLSQPFHVAEVFNSVPGKFVPLKETIRGF 425
Query: 132 AVFKPGLEVEVPKEERYKVGLTDFV 156
G +P++ Y G D V
Sbjct: 426 KGILAGEYDHIPEQAFYMAGSIDEV 450
>sp|O88737|BSN_MOUSE Protein bassoon OS=Mus musculus GN=Bsn PE=1 SV=4
Length = 3942
Score = 30.4 bits (67), Expect = 9.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 3 QHQEGIGIKIYNATPPEGSTPRMADALPAEPSSGVHQP 40
QHQ G+G ++ +A PP G ++ LP+ P H P
Sbjct: 2881 QHQGGLGSQV-SALPPNGLVRKVKRTLPSPPPEEAHLP 2917
>sp|Q12GQ0|ATPB_POLSJ ATP synthase subunit beta OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=atpD PE=3 SV=1
Length = 467
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 51/143 (35%), Gaps = 22/143 (15%)
Query: 12 IYNATPPEGSTPRMADALPAEPSSGVHQPGRKRRAVAKGVQKTISKTSMLVNFLPTGTLL 71
IY A P ST R D + G A A+ VQ T+ + L + +
Sbjct: 338 IYPAVDPLDSTSRQLDP---------NVVGEDHYATARAVQGTLQRYKELRDII------ 382
Query: 72 TFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGL 131
++ G E +P + L + + FH + F G GK T RG
Sbjct: 383 -------AILGMDELAPEDKLAVARARKIQRFLSQPFHVAEVFTGSPGKYVSLAETIRGF 435
Query: 132 AVFKPGLEVEVPKEERYKVGLTD 154
+ G +P++ Y VG D
Sbjct: 436 KMIVAGECDHLPEQAFYMVGTID 458
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,505,155
Number of Sequences: 539616
Number of extensions: 3710637
Number of successful extensions: 10073
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 10061
Number of HSP's gapped (non-prelim): 69
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)