Query 027596
Match_columns 221
No_of_seqs 110 out of 123
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 12:16:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05078 DUF679: Protein of un 100.0 1.1E-85 2.3E-90 555.2 14.4 164 55-218 1-170 (170)
2 PF13127 DUF3955: Protein of u 66.7 5 0.00011 29.3 2.3 33 90-122 2-35 (63)
3 PF13511 DUF4124: Domain of un 44.0 12 0.00027 25.6 1.1 15 114-128 18-32 (60)
4 PF10894 DUF2689: Protein of u 40.3 12 0.00026 27.6 0.6 9 153-161 21-29 (61)
5 PRK13724 conjugal transfer pro 34.1 17 0.00038 27.1 0.6 9 153-161 21-29 (65)
6 PLN02667 inositol polyphosphat 32.5 29 0.00063 32.0 1.9 35 125-159 214-249 (286)
7 PF15601 Imm42: Immunity prote 31.6 27 0.00059 29.2 1.4 23 144-166 6-28 (134)
8 PF03770 IPK: Inositol polypho 29.4 79 0.0017 26.9 3.9 61 90-160 101-175 (197)
9 PF11395 DUF2873: Protein of u 26.3 55 0.0012 22.6 1.9 23 149-171 3-25 (43)
10 PF15623 CT47: Cancer/testis g 23.7 32 0.0007 32.2 0.6 20 146-165 114-133 (279)
11 COG3670 Lignostilbene-alpha,be 22.1 1.1E+02 0.0023 30.9 3.8 54 102-155 292-354 (490)
12 KOG4833 Uncharacterized conser 20.1 32 0.00069 34.3 -0.2 26 151-185 499-524 (573)
No 1
>PF05078 DUF679: Protein of unknown function (DUF679); InterPro: IPR007770 This family contains uncharacterised plant proteins of unknown function.
Probab=100.00 E-value=1.1e-85 Score=555.24 Aligned_cols=164 Identities=52% Similarity=0.970 Sum_probs=159.2
Q ss_pred hhhhhhhhccCCchhHHHHHhhcccccCCCcccchhHHHHHHHHHHhhhhhhceecccceecCCCcEEEEEeeccceeee
Q 027596 55 ISKTSMLVNFLPTGTLLTFEMILPSVYGNGECSPVNTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGLAVF 134 (221)
Q Consensus 55 lssta~La~LLPTGTvLaFQ~LsP~~TN~G~C~~~nr~Lt~~Ll~lca~sCff~sFTDS~~~~dGkvyYG~aT~~Glw~f 134 (221)
|+++|||+|||||||||+||+|+|++||||+|+++|||||++||++||+||||+||||||+|+|||+|||+||+||||+|
T Consensus 1 ls~ta~La~LLPTGTvlaFq~L~P~~Tn~G~C~~~nr~lt~~Ll~lca~sC~f~sFTDS~~~~dGkvyYG~aT~~Gl~~f 80 (170)
T PF05078_consen 1 LSSTANLAKLLPTGTVLAFQILSPSFTNNGECDTANRWLTAALLALCAASCFFFSFTDSFRGSDGKVYYGFATPRGLWVF 80 (170)
T ss_pred CccHHHHHHhCcchHHHHHHHhhhhcccCCccCcchHHHHHHHHHHHHHHHHHeeecceeECCCCCEEEEEEEcccceec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C------CCCCCCCCccccceeeecchhhhHHHHHHHHHHHhccCCcceeeCCCCchhHHHHHHhhchHHHhhhheeeeE
Q 027596 135 K------PGLEVEVPKEERYKVGLTDFVHAMMSVMVFVAIAFSDFRVTRCLFPGHEKEMDQVMESFPLMVGVICSGLFLV 208 (221)
Q Consensus 135 ~------~~~~~~~~~~s~yrLr~~DfvHA~lS~~VF~avAl~D~nvv~Cf~P~~~~~~~evl~~lPl~vG~~~S~lF~i 208 (221)
| ++.+.++++++|||||++|||||+||++||++||++|+|||+||||++++|+||+|+++|++||++||+|||+
T Consensus 81 ~~~~~~~g~~~~~~~~~~~yrlr~~DfvHA~lS~~VF~aval~d~~v~~Cf~P~~~~~~~~~l~~lP~~vG~~~S~vF~~ 160 (170)
T PF05078_consen 81 NYPGPEEGGGELKPRDLSKYRLRFIDFVHAFLSVVVFLAVALSDQNVVSCFFPSPSSETKEVLMNLPLGVGVLCSMVFMI 160 (170)
T ss_pred CCCCccccccCCCccccccceEehhhhhHHHHHHHHHHHhheeCCCcceecCCCCchhHHHHHHHhHHHHHHhHeeEEEE
Confidence 9 3444566799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCC
Q 027596 209 FPNTRYGIGC 218 (221)
Q Consensus 209 FPt~RhGIGy 218 (221)
|||+||||||
T Consensus 161 FPt~R~GIGy 170 (170)
T PF05078_consen 161 FPTTRHGIGY 170 (170)
T ss_pred CCCCCCCCCC
Confidence 9999999998
No 2
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=66.66 E-value=5 Score=29.33 Aligned_cols=33 Identities=21% Similarity=0.506 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhhhhhhcee-cccceecCCCcEE
Q 027596 90 NTLMIHVLLGLCALSCFFFH-FTDSFRGPDGKVY 122 (221)
Q Consensus 90 nr~Lt~~Ll~lca~sCff~s-FTDS~~~~dGkvy 122 (221)
+++..+.++.+.++.|++.. ...||+|+||-++
T Consensus 2 ~~~~l~~~~~llg~~~l~i~~~~~syVd~~G~L~ 35 (63)
T PF13127_consen 2 KKYILSLILLLLGVVCLFIFNIIGSYVDEDGVLH 35 (63)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccceECCCCeEe
Confidence 56788888889999998764 5669999999775
No 3
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=44.00 E-value=12 Score=25.61 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=10.9
Q ss_pred eecCCCcEEEEEeec
Q 027596 114 FRGPDGKVYYGFVTP 128 (221)
Q Consensus 114 ~~~~dGkvyYG~aT~ 128 (221)
.+|.+|+++|.=.=+
T Consensus 18 ~~D~~G~v~ysd~P~ 32 (60)
T PF13511_consen 18 WVDENGVVHYSDTPP 32 (60)
T ss_pred EECCCCCEEECccCC
Confidence 348899999975533
No 4
>PF10894 DUF2689: Protein of unknown function (DUF2689); InterPro: IPR024396 Members of this protein family are annotated as conjugal transfer protein TrbD; however, currently no function is known.
Probab=40.28 E-value=12 Score=27.64 Aligned_cols=9 Identities=56% Similarity=1.047 Sum_probs=7.9
Q ss_pred cchhhhHHH
Q 027596 153 TDFVHAMMS 161 (221)
Q Consensus 153 ~DfvHA~lS 161 (221)
-||+||++|
T Consensus 21 DDFmhaVlS 29 (61)
T PF10894_consen 21 DDFMHAVLS 29 (61)
T ss_pred HHHHHHHHh
Confidence 499999998
No 5
>PRK13724 conjugal transfer protein TrbD; Provisional
Probab=34.10 E-value=17 Score=27.08 Aligned_cols=9 Identities=56% Similarity=1.047 Sum_probs=7.9
Q ss_pred cchhhhHHH
Q 027596 153 TDFVHAMMS 161 (221)
Q Consensus 153 ~DfvHA~lS 161 (221)
-||+||++|
T Consensus 21 DDF~h~VlS 29 (65)
T PRK13724 21 DDFMHAVLS 29 (65)
T ss_pred HHHHHHHHh
Confidence 499999998
No 6
>PLN02667 inositol polyphosphate multikinase
Probab=32.51 E-value=29 Score=31.97 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=22.8
Q ss_pred EeeccceeeeCCCCCC-CCCccccceeeecchhhhH
Q 027596 125 FVTPRGLAVFKPGLEV-EVPKEERYKVGLTDFVHAM 159 (221)
Q Consensus 125 ~aT~~Glw~f~~~~~~-~~~~~s~yrLr~~DfvHA~ 159 (221)
|....=|.++|+.... ......+.++|++||-|++
T Consensus 214 fysSSLLivYDg~~~~~~~~~~~~v~VkmIDFAH~~ 249 (286)
T PLN02667 214 FFSASILIVYEGEAILKGNPEDSRVEVKLVDFAHVL 249 (286)
T ss_pred EEEeEEEEEEcCCccccccCCCCcceEEEEeCcccc
Confidence 3334446777765432 1124578999999999985
No 7
>PF15601 Imm42: Immunity protein 42
Probab=31.63 E-value=27 Score=29.20 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=19.1
Q ss_pred ccccceeeecchhhhHHHHHHHH
Q 027596 144 KEERYKVGLTDFVHAMMSVMVFV 166 (221)
Q Consensus 144 ~~s~yrLr~~DfvHA~lS~~VF~ 166 (221)
+..-|.+.-.||+|+|+|.+..-
T Consensus 6 ~~~~~eiG~~dfl~sFFsti~~~ 28 (134)
T PF15601_consen 6 GFSWYEIGPPDFLHSFFSTISYR 28 (134)
T ss_pred CceEEEeCCHHHHHHHHHHHHHH
Confidence 44568999999999999998754
No 8
>PF03770 IPK: Inositol polyphosphate kinase ; InterPro: IPR005522 ArgRIII has been demonstrated to be an inositol polyphosphate kinase [] which catalyses the reaction ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate .; GO: 0008440 inositol trisphosphate 3-kinase activity; PDB: 2IF8_B 2IEW_B 1W2C_A 1W2F_A 1W2D_A 2A98_A 2AQX_A 1TZD_A.
Probab=29.36 E-value=79 Score=26.92 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhhhhhhceecccceecCCCcEEEEEeeccceeeeCCCC--------------CCCCCccccceeeecch
Q 027596 90 NTLMIHVLLGLCALSCFFFHFTDSFRGPDGKVYYGFVTPRGLAVFKPGL--------------EVEVPKEERYKVGLTDF 155 (221)
Q Consensus 90 nr~Lt~~Ll~lca~sCff~sFTDS~~~~dGkvyYG~aT~~Glw~f~~~~--------------~~~~~~~s~yrLr~~Df 155 (221)
.+.+-.++--|-.+--+|-.-+. |=|....=|.++++.. .........+++|++||
T Consensus 101 ~~~~~~~l~~L~~L~~~~~~~~~----------~~f~sSSLLivYd~~~~~~~~~~~~~~~~~~~~~~~~~~~~vklIDF 170 (197)
T PF03770_consen 101 RELLRSILKQLEQLREWFESQRS----------FRFYSSSLLIVYDGDPSRLENESSSSSTSTSDSDDPPNKVDVKLIDF 170 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-CC----------EEEESEEEEEEEETTHHHHHHC---------------S-EEEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHhccc----------CeeecceEEEEEcCCcccccccccccccccccccCCCCcccEEEEEC
Confidence 44455555555556555554443 2222333366777651 01113567899999999
Q ss_pred hhhHH
Q 027596 156 VHAMM 160 (221)
Q Consensus 156 vHA~l 160 (221)
.|+..
T Consensus 171 AH~~~ 175 (197)
T PF03770_consen 171 AHVFP 175 (197)
T ss_dssp TTEEE
T ss_pred CCccc
Confidence 99976
No 9
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=26.32 E-value=55 Score=22.57 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.8
Q ss_pred eeeecchhhhHHHHHHHHHHHhc
Q 027596 149 KVGLTDFVHAMMSVMVFVAIAFS 171 (221)
Q Consensus 149 rLr~~DfvHA~lS~~VF~avAl~ 171 (221)
.|..+||--.++|++.|+++.+.
T Consensus 3 ~ltl~dfylc~l~~llflv~iml 25 (43)
T PF11395_consen 3 HLTLFDFYLCFLSFLLFLVIIML 25 (43)
T ss_pred ceehhHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999998763
No 10
>PF15623 CT47: Cancer/testis gene family 47
Probab=23.70 E-value=32 Score=32.17 Aligned_cols=20 Identities=15% Similarity=0.539 Sum_probs=16.7
Q ss_pred ccceeeecchhhhHHHHHHH
Q 027596 146 ERYKVGLTDFVHAMMSVMVF 165 (221)
Q Consensus 146 s~yrLr~~DfvHA~lS~~VF 165 (221)
..||+.|+|.||++|-=+-+
T Consensus 114 aGfR~~fLDLVhslL~RiY~ 133 (279)
T PF15623_consen 114 AGFRFMFLDLVHSLLNRIYY 133 (279)
T ss_pred ccceeeHHHHHHHHHHHHhh
Confidence 45999999999999876654
No 11
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.13 E-value=1.1e+02 Score=30.92 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=40.1
Q ss_pred hhhhhceecccceecCCCcEEEEEeeccce-eeeCCCCC--------CCCCccccceeeecch
Q 027596 102 ALSCFFFHFTDSFRGPDGKVYYGFVTPRGL-AVFKPGLE--------VEVPKEERYKVGLTDF 155 (221)
Q Consensus 102 a~sCff~sFTDS~~~~dGkvyYG~aT~~Gl-w~f~~~~~--------~~~~~~s~yrLr~~Df 155 (221)
+=+||+++|.+-|.+.||+|.-+++-.+-+ -..+.+.+ +.++.+.+++|...+-
T Consensus 292 ~~p~fvfH~~NAye~~d~~v~~d~~~~~~~~~~~~~~~~~~~g~~~~~a~~~L~R~~lnl~tg 354 (490)
T COG3670 292 AEPGFVFHFLNAYEEGDEVVLVDFLRYDDFSQTLDTLGEGPGGDFRTLAPPRLHRWTLNLKTG 354 (490)
T ss_pred cCCeEEEEecceeecCCCcEEEEEEeecccccccccccccccccccccCCCcceEEEEccccc
Confidence 458999999999999999999999988776 34332221 2346777888776664
No 12
>KOG4833 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.14 E-value=32 Score=34.34 Aligned_cols=26 Identities=35% Similarity=0.796 Sum_probs=20.7
Q ss_pred eecchhhhHHHHHHHHHHHhccCCcceeeCCCCch
Q 027596 151 GLTDFVHAMMSVMVFVAIAFSDFRVTRCLFPGHEK 185 (221)
Q Consensus 151 r~~DfvHA~lS~~VF~avAl~D~nvv~Cf~P~~~~ 185 (221)
+.+||+||+ .++|-|...||||..+.
T Consensus 499 piidfnhaV---------cfsdLnIadcflpieSr 524 (573)
T KOG4833|consen 499 PIIDFNHAV---------CFSDLNIADCFLPIESR 524 (573)
T ss_pred HHHHHHHHH---------HHhcccHhHheehhHhh
Confidence 457888875 45799999999998764
Done!