Query 027596
Match_columns 221
No_of_seqs 110 out of 123
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 20:56:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4frf_A Inositol polyphosphate 39.0 9.8 0.00033 33.0 1.2 29 131-159 212-241 (275)
2 1k2d_P MBP peptide, myelin bas 29.4 15 0.0005 22.1 0.5 10 209-218 10-19 (26)
3 2le2_A P56; UDG inhibition, DN 25.2 34 0.0012 23.8 1.8 22 110-133 6-33 (56)
4 1e0l_A Formin binding protein; 23.5 37 0.0013 20.9 1.6 10 114-123 11-20 (37)
5 1wr4_A Ubiquitin-protein ligas 23.3 34 0.0012 20.4 1.4 10 114-123 12-21 (36)
6 1e0m_A Wwprototype; SH3 protot 23.0 39 0.0013 20.3 1.6 10 115-124 12-21 (37)
7 2ysh_A GAS-7, growth-arrest-sp 21.2 44 0.0015 20.6 1.6 11 114-124 15-25 (40)
8 1ymz_A CC45; artificial protei 20.1 47 0.0016 20.8 1.6 11 114-124 16-26 (43)
9 1wr3_A Ubiquitin-protein ligas 19.8 44 0.0015 20.1 1.4 9 115-123 13-21 (36)
10 2kyk_A E3 ubiquitin-protein li 18.9 48 0.0016 20.4 1.4 9 115-123 15-23 (39)
No 1
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol phosphate kinase, transferase; 2.90A {Arabidopsis thaliana}
Probab=39.00 E-value=9.8 Score=33.01 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=18.0
Q ss_pred eeeeCCCCCCC-CCccccceeeecchhhhH
Q 027596 131 LAVFKPGLEVE-VPKEERYKVGLTDFVHAM 159 (221)
Q Consensus 131 lw~f~~~~~~~-~~~~s~yrLr~~DfvHA~ 159 (221)
|.++|+..... ..+..+.++|.|||.|++
T Consensus 212 L~vYD~~~~~~~~~~~~~~~vrmIDFAh~~ 241 (275)
T 4frf_A 212 LMVYENESILKGNDDDARPQVKLVDFAHVL 241 (275)
T ss_dssp EEEEECCC-------CCCCEEEEECCTTCE
T ss_pred eeEecCcccccccCCCCcccEEEEECCCCC
Confidence 56667654321 125578999999999974
No 2
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=29.43 E-value=15 Score=22.10 Aligned_cols=10 Identities=40% Similarity=0.683 Sum_probs=7.9
Q ss_pred cCCCCcccCC
Q 027596 209 FPNTRYGIGC 218 (221)
Q Consensus 209 FPt~RhGIGy 218 (221)
=|+.|||-|-
T Consensus 10 rpsqrhg~gs 19 (26)
T 1k2d_P 10 RPSQRHGTGS 19 (26)
T ss_pred CccccccCCC
Confidence 3889999874
No 3
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=25.22 E-value=34 Score=23.77 Aligned_cols=22 Identities=45% Similarity=1.014 Sum_probs=16.0
Q ss_pred cccce------ecCCCcEEEEEeeccceee
Q 027596 110 FTDSF------RGPDGKVYYGFVTPRGLAV 133 (221)
Q Consensus 110 FTDS~------~~~dGkvyYG~aT~~Glw~ 133 (221)
|-||| +|.||+-||-.- +||-.
T Consensus 6 f~dsy~~t~ll~dddg~q~~e~h--~glsl 33 (56)
T 2le2_A 6 FVDSYDVTMLLQDDDGKQYYEYH--KGLSL 33 (56)
T ss_dssp SCSSEEEEEEEECTTSCEEEEEE--EEECH
T ss_pred cccceeEEEEEEcCCCceeeeee--cCccc
Confidence 66776 578999999764 56544
No 4
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=23.50 E-value=37 Score=20.94 Aligned_cols=10 Identities=50% Similarity=1.235 Sum_probs=7.5
Q ss_pred eecCCCcEEE
Q 027596 114 FRGPDGKVYY 123 (221)
Q Consensus 114 ~~~~dGkvyY 123 (221)
+++.||+.||
T Consensus 11 ~~~~~G~~YY 20 (37)
T 1e0l_A 11 YKTADGKTYY 20 (37)
T ss_dssp EECTTSCEEE
T ss_pred EECCCCCEEE
Confidence 4567898887
No 5
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=23.27 E-value=34 Score=20.36 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=7.7
Q ss_pred eecCCCcEEE
Q 027596 114 FRGPDGKVYY 123 (221)
Q Consensus 114 ~~~~dGkvyY 123 (221)
.+|++|++||
T Consensus 12 ~~d~~g~~Yy 21 (36)
T 1wr4_A 12 RKDAKGRTYY 21 (36)
T ss_dssp EECSSSCEEE
T ss_pred EECCCCCEEE
Confidence 4567899987
No 6
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=22.99 E-value=39 Score=20.29 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=7.6
Q ss_pred ecCCCcEEEE
Q 027596 115 RGPDGKVYYG 124 (221)
Q Consensus 115 ~~~dGkvyYG 124 (221)
.+.+|++||=
T Consensus 12 ~~~~G~~Yy~ 21 (37)
T 1e0m_A 12 KTHNGKTYYY 21 (37)
T ss_dssp ECSSCCEEEE
T ss_pred ECCCCCEEEE
Confidence 4578999884
No 7
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=21.20 E-value=44 Score=20.57 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=8.2
Q ss_pred eecCCCcEEEE
Q 027596 114 FRGPDGKVYYG 124 (221)
Q Consensus 114 ~~~~dGkvyYG 124 (221)
.+|.+|++||=
T Consensus 15 ~~d~~Gr~YY~ 25 (40)
T 2ysh_A 15 YLSPQGRRYYV 25 (40)
T ss_dssp EECTTSCEEEE
T ss_pred EECCCCCEEEE
Confidence 35678999983
No 8
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=20.09 E-value=47 Score=20.79 Aligned_cols=11 Identities=45% Similarity=0.643 Sum_probs=8.1
Q ss_pred eecCCCcEEEE
Q 027596 114 FRGPDGKVYYG 124 (221)
Q Consensus 114 ~~~~dGkvyYG 124 (221)
.++.+|++||=
T Consensus 16 ~~~~~Gr~YY~ 26 (43)
T 1ymz_A 16 RTDVEGKVYYF 26 (43)
T ss_dssp EECTTSCEEEE
T ss_pred EECCCCCEEEE
Confidence 35678999983
No 9
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=19.81 E-value=44 Score=20.07 Aligned_cols=9 Identities=33% Similarity=0.671 Sum_probs=7.4
Q ss_pred ecCCCcEEE
Q 027596 115 RGPDGKVYY 123 (221)
Q Consensus 115 ~~~dGkvyY 123 (221)
.|.+|++||
T Consensus 13 ~d~~G~~Yy 21 (36)
T 1wr3_A 13 VDNLGRTYY 21 (36)
T ss_dssp ECSSSCEEE
T ss_pred ECCCCCEEE
Confidence 467899998
No 10
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=18.95 E-value=48 Score=20.37 Aligned_cols=9 Identities=33% Similarity=0.822 Sum_probs=7.4
Q ss_pred ecCCCcEEE
Q 027596 115 RGPDGKVYY 123 (221)
Q Consensus 115 ~~~dGkvyY 123 (221)
.|.+|++||
T Consensus 15 ~d~~G~~YY 23 (39)
T 2kyk_A 15 VDNMGRIYY 23 (39)
T ss_dssp ECTTSCEEE
T ss_pred EcCCCCEEE
Confidence 467899999
Done!