Query 027596
Match_columns 221
No_of_seqs 110 out of 123
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 20:56:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027596.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027596hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ywia1 b.72.1.1 (A:15-42) Hun 55.8 2.2 0.00016 24.7 1.3 10 114-123 6-15 (28)
2 d1o6wa1 b.72.1.1 (A:1-29) Spli 55.6 2.7 0.00019 24.5 1.7 10 114-123 7-16 (29)
3 d2rm0w1 b.72.1.1 (W:1-37) Form 48.7 3.8 0.00028 24.7 1.7 10 114-123 11-20 (37)
4 d1o6wa2 b.72.1.1 (A:30-75) Spl 47.7 3.9 0.00029 25.9 1.7 11 114-124 19-29 (46)
5 d2jmfa1 b.72.1.1 (A:521-553) U 23.9 16 0.0011 21.3 1.4 11 114-124 10-20 (33)
6 d2dk1a1 b.72.1.1 (A:7-44) WW d 22.2 9.6 0.0007 23.0 0.2 19 114-132 6-25 (38)
7 d2axtm1 f.23.35.1 (M:1-36) Pho 18.4 3.9 0.00028 25.0 -2.3 14 198-211 6-19 (36)
8 d1s12a_ d.64.2.1 (A:) Hypothet 17.4 58 0.0043 22.5 3.7 48 152-199 18-75 (94)
9 d1aopa2 d.58.36.1 (A:346-425) 15.6 34 0.0024 22.9 1.9 19 115-133 5-23 (80)
10 d1mu2a1 c.55.3.1 (A:430-555) H 14.1 48 0.0035 22.6 2.4 27 108-134 9-36 (126)
No 1
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.76 E-value=2.2 Score=24.67 Aligned_cols=10 Identities=50% Similarity=1.338 Sum_probs=8.4
Q ss_pred eecCCCcEEE
Q 027596 114 FRGPDGKVYY 123 (221)
Q Consensus 114 ~~~~dGkvyY 123 (221)
++++||++||
T Consensus 6 ~~~~~G~~YY 15 (28)
T d1ywia1 6 HKSPDGRTYY 15 (28)
T ss_dssp EEETTTEEEE
T ss_pred EECCCCCEEE
Confidence 5678999988
No 2
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=55.56 E-value=2.7 Score=24.49 Aligned_cols=10 Identities=30% Similarity=0.976 Sum_probs=8.6
Q ss_pred eecCCCcEEE
Q 027596 114 FRGPDGKVYY 123 (221)
Q Consensus 114 ~~~~dGkvyY 123 (221)
++++||+.||
T Consensus 7 ~~~~~G~~YY 16 (29)
T d1o6wa1 7 AKDASGRIYY 16 (29)
T ss_dssp EECTTCCEEE
T ss_pred EECCCCCEEE
Confidence 5789999988
No 3
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}
Probab=48.70 E-value=3.8 Score=24.72 Aligned_cols=10 Identities=50% Similarity=1.235 Sum_probs=8.5
Q ss_pred eecCCCcEEE
Q 027596 114 FRGPDGKVYY 123 (221)
Q Consensus 114 ~~~~dGkvyY 123 (221)
++++||++||
T Consensus 11 ~~~~~Gr~YY 20 (37)
T d2rm0w1 11 YKTADGKTYY 20 (37)
T ss_dssp EECTTCCEEE
T ss_pred EECCCCCEEE
Confidence 5678999998
No 4
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.70 E-value=3.9 Score=25.91 Aligned_cols=11 Identities=55% Similarity=0.881 Sum_probs=8.8
Q ss_pred eecCCCcEEEE
Q 027596 114 FRGPDGKVYYG 124 (221)
Q Consensus 114 ~~~~dGkvyYG 124 (221)
++++||++||=
T Consensus 19 ~~~~~Gr~YYy 29 (46)
T d1o6wa2 19 AKTADGKVYYY 29 (46)
T ss_dssp EECTTCCEEEE
T ss_pred EECCCCCEEEE
Confidence 56789999983
No 5
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=23.86 E-value=16 Score=21.28 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=8.5
Q ss_pred eecCCCcEEEE
Q 027596 114 FRGPDGKVYYG 124 (221)
Q Consensus 114 ~~~~dGkvyYG 124 (221)
..|.+|++||-
T Consensus 10 ~~d~~G~~Yyi 20 (33)
T d2jmfa1 10 RYTAAGERFFV 20 (33)
T ss_dssp EECTTSCEEEE
T ss_pred EECCCCCEEEE
Confidence 45789999983
No 6
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.24 E-value=9.6 Score=23.05 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=10.8
Q ss_pred eecCCCcEEE-EEeecccee
Q 027596 114 FRGPDGKVYY-GFVTPRGLA 132 (221)
Q Consensus 114 ~~~~dGkvyY-G~aT~~Glw 132 (221)
.+++||++|| =..|...-|
T Consensus 6 ~~~~~G~~YYyN~~T~eS~W 25 (38)
T d2dk1a1 6 GITSEGYHYYYDLISGASQW 25 (38)
T ss_dssp CCCSTTCCCEEESSSCCEES
T ss_pred EECCCCCEEEEECCCCCEec
Confidence 3567998876 333433334
No 7
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.43 E-value=3.9 Score=25.00 Aligned_cols=14 Identities=36% Similarity=0.949 Sum_probs=12.2
Q ss_pred HHhhhheeeeEcCC
Q 027596 198 VGVICSGLFLVFPN 211 (221)
Q Consensus 198 vG~~~S~lF~iFPt 211 (221)
.|++++.+|++.||
T Consensus 6 Lg~iAt~LFilvPt 19 (36)
T d2axtm1 6 LGLIATALFVLVPS 19 (36)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999998886
No 8
>d1s12a_ d.64.2.1 (A:) Hypothetical protein TM1457 {Thermotoga maritima [TaxId: 2336]}
Probab=17.35 E-value=58 Score=22.52 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=37.5
Q ss_pred ecchhhhHHHHHHHHHHHhcc----------CCcceeeCCCCchhHHHHHHhhchHHH
Q 027596 152 LTDFVHAMMSVMVFVAIAFSD----------FRVTRCLFPGHEKEMDQVMESFPLMVG 199 (221)
Q Consensus 152 ~~DfvHA~lS~~VF~avAl~D----------~nvv~Cf~P~~~~~~~evl~~lPl~vG 199 (221)
-.|.|=|..|++++.++--.+ .+-..|-+|..+++.+.+|+++=++.-
T Consensus 18 G~DIVCAaVS~l~~~~vN~l~~~~~~~~~~~~G~l~~~~~~~~~~~q~ll~~m~~gL~ 75 (94)
T d1s12a_ 18 PDKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVKVLAAMVRSLK 75 (94)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCCHHHHHHHHHHHHHHH
T ss_pred CCceeehhhHHHHHHHHHHHHHHhCCcEEeeCCEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 349999999999999886433 334788899999888989888766543
No 9
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=15.58 E-value=34 Score=22.87 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=16.0
Q ss_pred ecCCCcEEEEEeeccceee
Q 027596 115 RGPDGKVYYGFVTPRGLAV 133 (221)
Q Consensus 115 ~~~dGkvyYG~aT~~Glw~ 133 (221)
++.||+-|||+.-+.|--.
T Consensus 5 ~~~dG~~~~gl~v~~GRi~ 23 (80)
T d1aopa2 5 KGIDDNWHLTLFIENGRIL 23 (80)
T ss_dssp ECSTTEEEEEECCGGGEEC
T ss_pred CCCCCCEEEEEEecCcccc
Confidence 4679999999999999653
No 10
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=14.08 E-value=48 Score=22.65 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=19.3
Q ss_pred eeccc-ceecCCCcEEEEEeeccceeee
Q 027596 108 FHFTD-SFRGPDGKVYYGFVTPRGLAVF 134 (221)
Q Consensus 108 ~sFTD-S~~~~dGkvyYG~aT~~Glw~f 134 (221)
.-||| |.+...|.-.+|++...|=+.+
T Consensus 9 t~YTDGS~~~n~~~~~~g~~~~~~~~~~ 36 (126)
T d1mu2a1 9 TFYTDGSCNRQSKEGKAGYVTDRGKDKV 36 (126)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTSCEEE
T ss_pred EEEEcCCCCCCCCcEEEEEEecCCCEEE
Confidence 35899 7776667788888888775443
Done!