Query 027597
Match_columns 221
No_of_seqs 107 out of 220
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 20:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u5t_A Appears to BE functiona 100.0 1.6E-79 5.4E-84 532.6 17.3 207 2-218 1-208 (233)
2 3cuq_A Vacuolar-sorting protei 100.0 1.6E-78 5.5E-83 526.4 16.7 195 24-218 1-195 (234)
3 3cuq_B Vacuolar protein-sortin 100.0 1.3E-48 4.4E-53 336.4 16.3 178 32-218 10-195 (218)
4 1w7p_D VPS36P, YLR417W; ESCRT- 100.0 3.4E-36 1.2E-40 288.1 13.7 199 3-218 321-542 (566)
5 1u5t_B Defective in vacuolar p 100.0 8.6E-32 2.9E-36 223.5 12.3 122 93-218 10-147 (169)
6 2pjp_A Selenocysteine-specific 94.3 0.14 4.7E-06 38.8 7.2 99 97-215 6-104 (121)
7 1t6s_A Conserved hypothetical 93.9 0.2 6.8E-06 40.6 7.8 103 102-217 10-131 (162)
8 2z99_A Putative uncharacterize 93.6 1.1 3.7E-05 38.0 12.1 102 101-217 17-137 (219)
9 3i71_A Ethanolamine utilizatio 93.6 0.11 3.9E-06 35.6 4.8 37 182-218 8-45 (68)
10 1lva_A Selenocysteine-specific 93.0 2.4 8.2E-05 36.0 13.4 104 92-215 135-240 (258)
11 1xn7_A Hypothetical protein YH 91.3 0.51 1.7E-05 33.6 6.0 38 181-218 6-43 (78)
12 3i5g_C Myosin catalytic light 90.5 2.4 8.3E-05 32.7 9.9 134 37-199 6-147 (159)
13 2heo_A Z-DNA binding protein 1 89.6 0.56 1.9E-05 31.9 4.9 46 172-217 5-51 (67)
14 2k02_A Ferrous iron transport 89.2 0.6 2.1E-05 34.0 5.0 37 181-217 6-42 (87)
15 2lmt_A Calmodulin-related prot 89.1 2.4 8.1E-05 31.7 8.7 93 37-157 7-99 (148)
16 1qgp_A Protein (double strande 88.7 0.74 2.5E-05 32.3 5.0 45 174-218 10-58 (77)
17 2ovk_B RLC, myosin regulatory 87.9 0.5 1.7E-05 35.2 4.0 108 38-156 14-135 (153)
18 2xvc_A ESCRT-III, SSO0910; cel 86.6 0.48 1.7E-05 32.2 2.8 37 109-154 17-53 (59)
19 2mys_C Myosin; muscle protein, 86.1 3.2 0.00011 30.0 7.6 96 38-157 6-101 (149)
20 3bpv_A Transcriptional regulat 85.7 1.6 5.4E-05 32.0 5.7 45 174-218 26-70 (138)
21 2htj_A P fimbrial regulatory p 85.5 2 6.7E-05 29.7 5.8 39 180-218 3-41 (81)
22 3tgn_A ADC operon repressor AD 85.4 1.5 5.3E-05 32.5 5.6 45 172-217 33-77 (146)
23 3fwb_A Cell division control p 84.8 3.3 0.00011 30.4 7.2 36 39-79 22-57 (161)
24 3g3z_A NMB1585, transcriptiona 84.7 1.9 6.4E-05 32.1 5.8 46 172-217 26-71 (145)
25 3nrv_A Putative transcriptiona 84.1 2 6.9E-05 32.0 5.7 47 172-218 35-81 (148)
26 1wdc_C Scallop myosin; calcium 83.8 11 0.00036 27.6 11.2 38 37-79 6-45 (156)
27 2fbh_A Transcriptional regulat 83.8 2 6.7E-05 31.8 5.5 45 174-218 34-79 (146)
28 2qac_A Myosin A tail domain in 83.4 4.2 0.00014 29.7 7.2 38 37-79 11-49 (146)
29 3j04_B Myosin regulatory light 83.3 3.1 0.00011 30.1 6.4 38 37-79 4-41 (143)
30 1sfx_A Conserved hypothetical 83.2 2.2 7.5E-05 29.8 5.3 43 175-217 18-60 (109)
31 1jgs_A Multiple antibiotic res 82.7 2.5 8.7E-05 30.9 5.7 45 174-218 31-75 (138)
32 2nnn_A Probable transcriptiona 82.2 2.8 9.5E-05 30.7 5.8 45 174-218 35-79 (140)
33 1tbx_A ORF F-93, hypothetical 82.2 2.8 9.7E-05 29.5 5.6 45 173-217 4-52 (99)
34 2obh_A Centrin-2; DNA repair c 82.1 7.2 0.00025 28.6 8.1 38 37-79 3-40 (143)
35 2gxg_A 146AA long hypothetical 82.1 2.9 9.9E-05 30.9 5.9 44 174-218 34-77 (146)
36 3bdd_A Regulatory protein MARR 82.0 2.5 8.5E-05 31.0 5.4 45 174-218 28-72 (142)
37 2ovk_C Myosin catalytic light 81.9 13 0.00045 27.3 9.8 38 37-79 6-45 (159)
38 2ia0_A Putative HTH-type trans 81.9 2.5 8.4E-05 33.6 5.7 48 170-217 10-57 (171)
39 3i5g_B Myosin regulatory light 81.9 2.7 9.3E-05 32.1 5.8 105 37-150 13-130 (153)
40 3eco_A MEPR; mutlidrug efflux 81.7 2.7 9.4E-05 30.9 5.6 45 173-217 27-73 (139)
41 3oop_A LIN2960 protein; protei 81.6 2.5 8.7E-05 31.3 5.4 45 173-217 33-77 (143)
42 2rdp_A Putative transcriptiona 81.5 3 0.0001 31.0 5.8 45 174-218 39-83 (150)
43 2pex_A Transcriptional regulat 81.3 2.9 9.9E-05 31.4 5.7 45 174-218 44-88 (153)
44 1top_A Troponin C; contractIle 81.0 7.8 0.00027 28.4 8.0 37 38-79 18-54 (162)
45 1z91_A Organic hydroperoxide r 80.8 2.7 9.1E-05 31.2 5.3 45 174-218 37-81 (147)
46 4hbl_A Transcriptional regulat 80.6 2.8 9.5E-05 31.5 5.3 45 174-218 38-82 (149)
47 3lmm_A Uncharacterized protein 80.3 1.7 5.7E-05 41.6 4.8 93 116-218 443-557 (583)
48 1lj9_A Transcriptional regulat 80.3 3.2 0.00011 30.6 5.6 45 174-218 26-70 (144)
49 2hr3_A Probable transcriptiona 80.2 3.3 0.00011 30.6 5.6 47 172-218 30-77 (147)
50 3bro_A Transcriptional regulat 80.1 3.8 0.00013 30.0 5.9 45 174-218 31-77 (141)
51 1qbj_A Protein (double-strande 80.0 3.2 0.00011 29.5 5.1 40 179-218 12-54 (81)
52 3ox6_A Calcium-binding protein 80.0 14 0.00048 26.4 11.0 37 38-79 9-45 (153)
53 2a61_A Transcriptional regulat 80.0 2.3 8E-05 31.4 4.7 45 174-218 30-74 (145)
54 2i3o_A Gamma-glutamyltransfera 79.9 2.4 8.4E-05 40.0 5.7 72 46-126 149-231 (516)
55 2jt1_A PEFI protein; solution 79.9 2.8 9.7E-05 29.5 4.8 39 179-217 6-50 (77)
56 2fbi_A Probable transcriptiona 79.7 2.4 8.3E-05 31.1 4.6 45 174-218 33-77 (142)
57 2c9l_Y EB1, zebra, BZLF1 trans 79.5 0.66 2.3E-05 31.2 1.2 40 34-80 19-58 (63)
58 2fa5_A Transcriptional regulat 79.5 3.6 0.00012 31.0 5.7 44 175-218 47-90 (162)
59 1p6r_A Penicillinase repressor 79.5 3 0.0001 28.5 4.8 44 174-217 6-53 (82)
60 3s2w_A Transcriptional regulat 79.3 2.9 9.9E-05 31.7 5.1 44 174-217 47-90 (159)
61 3cdh_A Transcriptional regulat 79.1 2.9 0.0001 31.4 5.0 45 174-218 40-84 (155)
62 2cyy_A Putative HTH-type trans 79.1 4.6 0.00016 30.9 6.2 45 174-218 4-48 (151)
63 2dbb_A Putative HTH-type trans 79.0 4.7 0.00016 30.7 6.3 44 175-218 7-50 (151)
64 2f2o_A Calmodulin fused with c 79.0 11 0.00038 28.2 8.4 36 39-79 10-45 (179)
65 1xmk_A Double-stranded RNA-spe 78.8 2.2 7.5E-05 30.4 3.9 47 172-218 6-53 (79)
66 2bl0_C Myosin regulatory light 78.8 15 0.00053 26.2 8.9 36 38-78 4-39 (142)
67 1ggw_A Protein (CDC4P); light 78.6 1.8 6.1E-05 31.4 3.5 36 116-156 91-126 (140)
68 1s3j_A YUSO protein; structura 78.4 2.2 7.7E-05 31.9 4.2 45 174-218 34-78 (155)
69 2cg4_A Regulatory protein ASNC 78.4 4.7 0.00016 30.8 6.1 45 174-218 5-49 (152)
70 3bj6_A Transcriptional regulat 78.3 3.2 0.00011 30.9 5.0 45 174-218 37-81 (152)
71 3bja_A Transcriptional regulat 78.3 2.4 8.3E-05 31.0 4.3 45 174-218 30-74 (139)
72 2nyx_A Probable transcriptiona 78.0 3.4 0.00012 31.8 5.2 45 174-218 42-86 (168)
73 3hsr_A HTH-type transcriptiona 78.0 2.6 8.7E-05 31.4 4.4 44 174-217 33-76 (140)
74 2cfx_A HTH-type transcriptiona 77.9 4.3 0.00015 30.9 5.7 43 175-217 3-45 (144)
75 2jnf_A Troponin C; stretch act 77.8 7.7 0.00026 28.4 7.0 37 38-79 11-48 (158)
76 3cjn_A Transcriptional regulat 77.6 4 0.00014 30.9 5.5 45 174-218 49-93 (162)
77 3qrx_A Centrin; calcium-bindin 77.5 19 0.00065 26.5 9.5 37 38-79 26-62 (169)
78 3r0a_A Putative transcriptiona 77.5 4.3 0.00015 30.3 5.5 44 174-217 23-68 (123)
79 2p5v_A Transcriptional regulat 77.5 4.6 0.00016 31.2 5.9 44 174-217 7-50 (162)
80 3ech_A MEXR, multidrug resista 77.4 2.7 9.1E-05 31.2 4.3 44 174-217 34-77 (142)
81 3k0l_A Repressor protein; heli 77.4 3.4 0.00012 31.5 5.1 44 174-217 43-86 (162)
82 1exr_A Calmodulin; high resolu 77.1 19 0.00063 26.2 9.3 37 38-79 8-44 (148)
83 2dk5_A DNA-directed RNA polyme 76.9 5.3 0.00018 28.8 5.6 47 171-217 14-62 (91)
84 1i1g_A Transcriptional regulat 76.7 5.3 0.00018 29.8 5.8 44 175-218 2-45 (141)
85 1wdc_B Scallop myosin; calcium 76.0 19 0.00064 26.3 8.8 37 38-79 16-52 (156)
86 2qww_A Transcriptional regulat 75.8 3.9 0.00013 30.6 4.9 43 175-217 39-81 (154)
87 1okr_A MECI, methicillin resis 75.6 3.8 0.00013 29.8 4.6 45 174-218 7-55 (123)
88 2mys_B Myosin; muscle protein, 74.9 23 0.00077 26.1 9.4 37 38-79 23-60 (166)
89 3deu_A Transcriptional regulat 74.7 5.7 0.00019 30.6 5.7 44 174-217 50-94 (166)
90 2e0w_A Gamma-glutamyltranspept 74.6 4.3 0.00015 38.7 5.8 74 45-126 162-246 (556)
91 2lhi_A Calmodulin, serine/thre 74.0 9.8 0.00034 29.5 7.0 37 38-79 9-45 (176)
92 2w25_A Probable transcriptiona 73.7 6.3 0.00022 30.0 5.7 43 175-217 5-47 (150)
93 2eth_A Transcriptional regulat 73.4 6.9 0.00023 29.4 5.8 45 174-218 41-85 (154)
94 2frh_A SARA, staphylococcal ac 73.1 5 0.00017 29.6 4.8 46 172-217 32-79 (127)
95 3dtp_E RLC, myosin regulatory 72.9 7.3 0.00025 30.4 6.0 103 39-151 56-171 (196)
96 3e6m_A MARR family transcripti 72.9 4 0.00014 31.0 4.4 44 174-217 50-93 (161)
97 3akb_A Putative calcium bindin 72.8 11 0.00039 27.5 6.8 40 39-79 3-42 (166)
98 2dg5_A Gamma-glutamyltranspept 72.5 4.4 0.00015 36.6 5.1 74 45-126 162-246 (366)
99 3u0k_A Rcamp; fluorescent prot 72.3 10 0.00035 35.3 7.6 92 37-157 299-391 (440)
100 4ds7_A Calmodulin, CAM; protei 72.2 23 0.0008 25.1 9.1 36 38-78 9-44 (147)
101 2kmu_A ATP-dependent DNA helic 71.6 2.5 8.5E-05 28.4 2.4 37 32-71 6-48 (56)
102 3kp7_A Transcriptional regulat 71.0 3.4 0.00012 31.0 3.5 43 174-217 35-77 (151)
103 2d1h_A ST1889, 109AA long hypo 70.7 6.3 0.00021 27.4 4.7 46 172-217 16-62 (109)
104 2bv6_A MGRA, HTH-type transcri 70.6 4.3 0.00015 29.9 3.9 45 174-218 34-78 (142)
105 3jw4_A Transcriptional regulat 70.3 3.6 0.00012 30.7 3.5 44 174-217 38-83 (148)
106 1nya_A Calerythrin; EF-hand, m 70.2 24 0.00082 26.0 8.2 109 38-157 5-118 (176)
107 1qv0_A Obelin, OBL; photoprote 69.9 5.4 0.00019 30.4 4.5 37 112-152 123-160 (195)
108 2fu4_A Ferric uptake regulatio 69.8 10 0.00035 25.7 5.5 44 175-218 15-65 (83)
109 1alv_A Calpain, S-camld; calci 69.7 14 0.00048 27.7 6.9 36 38-79 2-38 (173)
110 3mse_B Calcium-dependent prote 69.7 11 0.00036 28.9 6.2 36 37-77 36-71 (180)
111 3a4c_A DNA replication factor 69.7 33 0.0011 25.8 8.6 69 113-187 29-98 (106)
112 3nyv_A Calmodulin-domain prote 68.8 17 0.00057 32.5 8.2 102 37-157 332-434 (484)
113 1sd4_A Penicillinase repressor 68.6 8.2 0.00028 28.0 5.1 45 173-217 6-54 (126)
114 3cuo_A Uncharacterized HTH-typ 68.5 9.7 0.00033 26.2 5.2 39 179-217 26-64 (99)
115 2e1c_A Putative HTH-type trans 68.3 9.2 0.00032 30.2 5.7 45 173-217 23-67 (171)
116 1oyi_A Double-stranded RNA-bin 68.1 7.9 0.00027 27.8 4.7 39 179-218 19-57 (82)
117 2v36_A Gamma-glutamyltranspept 67.6 5.4 0.00019 36.1 4.6 32 91-126 210-242 (376)
118 1fse_A GERE; helix-turn-helix 67.6 16 0.00056 23.7 6.0 47 172-220 9-55 (74)
119 2qmc_A GGT, gamma-glutamyltran 67.5 6.7 0.00023 35.6 5.2 32 91-126 225-257 (377)
120 3f3x_A Transcriptional regulat 67.3 9.5 0.00033 28.1 5.3 44 174-218 34-77 (144)
121 2fxa_A Protease production reg 67.1 9.5 0.00033 30.8 5.6 44 174-217 45-88 (207)
122 2k4b_A Transcriptional regulat 67.0 5.5 0.00019 29.1 3.7 46 172-217 30-79 (99)
123 3boq_A Transcriptional regulat 66.7 3.9 0.00013 30.8 3.0 45 174-218 44-89 (160)
124 2kko_A Possible transcriptiona 66.2 13 0.00043 26.9 5.7 60 136-217 5-64 (108)
125 1dtl_A Cardiac troponin C; hel 66.1 31 0.0011 24.9 8.0 134 39-199 17-155 (161)
126 3nqo_A MARR-family transcripti 65.8 9.2 0.00031 30.1 5.2 43 175-217 39-83 (189)
127 3u2r_A Regulatory protein MARR 65.6 6.6 0.00023 30.0 4.2 46 172-217 41-88 (168)
128 1ku9_A Hypothetical protein MJ 65.2 9.7 0.00033 27.8 4.9 43 175-217 24-67 (152)
129 3fm5_A Transcriptional regulat 65.1 9.2 0.00032 28.4 4.9 44 174-217 36-80 (150)
130 2wte_A CSA3; antiviral protein 64.8 8.3 0.00028 32.6 5.0 46 172-217 147-192 (244)
131 2bl0_B Myosin regulatory light 64.8 30 0.001 24.5 7.5 33 42-79 7-39 (145)
132 3lmm_A Uncharacterized protein 64.3 8.5 0.00029 36.7 5.5 43 175-217 428-470 (583)
133 2lkp_A Transcriptional regulat 64.2 30 0.001 24.8 7.4 64 132-217 8-71 (119)
134 1r1u_A CZRA, repressor protein 63.9 26 0.00089 24.9 7.0 60 136-217 6-65 (106)
135 2p5k_A Arginine repressor; DNA 63.9 17 0.00057 23.2 5.4 34 181-214 9-47 (64)
136 2yu3_A DNA-directed RNA polyme 62.7 11 0.00038 27.6 4.7 44 173-216 33-78 (95)
137 2g9w_A Conserved hypothetical 62.6 14 0.00048 27.7 5.5 44 174-217 6-54 (138)
138 2nlz_A Cephalosporin acylase; 62.0 11 0.00039 35.7 5.8 32 91-126 215-247 (547)
139 1q80_A SCP, sarcoplasmic calci 61.3 45 0.0016 24.4 9.1 127 38-200 4-153 (174)
140 1w7j_B Myosin light chain 1; m 59.3 19 0.00064 26.0 5.6 37 38-79 8-44 (151)
141 3k21_A PFCDPK3, calcium-depend 58.5 28 0.00096 26.9 6.8 37 38-79 50-86 (191)
142 3lij_A Calcium/calmodulin depe 58.4 11 0.00039 33.9 5.0 135 39-199 345-484 (494)
143 3nxa_A Protein S100-A16; S100 58.3 32 0.0011 24.5 6.5 76 34-130 5-84 (100)
144 2bec_A Calcineurin B homologou 58.1 5.3 0.00018 31.0 2.4 36 38-79 27-62 (202)
145 2kn2_A Calmodulin; S MAPK phos 57.7 39 0.0013 22.4 7.1 83 39-148 8-91 (92)
146 4b8x_A SCO5413, possible MARR- 57.2 13 0.00045 28.0 4.5 44 174-217 32-77 (147)
147 3jtn_A YPBH, adapter protein M 56.1 51 0.0017 23.3 7.8 61 139-200 9-73 (91)
148 2v79_A DNA replication protein 56.1 22 0.00074 27.3 5.6 45 174-218 29-78 (135)
149 3tl4_X Glutaminyl-tRNA synthet 55.7 16 0.00054 30.0 5.0 54 50-111 17-70 (187)
150 4aik_A Transcriptional regulat 55.6 24 0.00083 26.7 5.8 44 174-217 28-72 (151)
151 2lnb_A Z-DNA-binding protein 1 55.6 19 0.00065 25.8 4.7 48 172-219 14-62 (80)
152 1n93_X P40 nucleoprotein; RNA 55.5 14 0.00047 32.6 4.7 42 34-75 137-179 (375)
153 3mwu_A Calmodulin-domain prote 54.7 32 0.0011 30.8 7.3 142 38-199 329-477 (486)
154 1on2_A Transcriptional regulat 54.3 19 0.00064 26.7 4.9 36 182-217 13-48 (142)
155 2q5c_A NTRC family transcripti 53.9 80 0.0027 25.3 9.0 143 58-218 11-183 (196)
156 3b73_A PHIH1 repressor-like pr 53.8 20 0.00068 26.7 4.9 43 175-217 11-55 (111)
157 2dk8_A DNA-directed RNA polyme 53.0 45 0.0015 23.7 6.4 62 97-171 13-74 (81)
158 3b09_A Peptidyl-prolyl CIS-tra 52.9 39 0.0013 24.1 6.2 53 94-151 31-85 (88)
159 1ub9_A Hypothetical protein PH 52.5 23 0.00077 24.2 4.8 40 179-218 18-57 (100)
160 3nw0_A Non-structural maintena 52.5 63 0.0021 27.1 8.4 102 115-218 17-148 (238)
161 1wy9_A Allograft inflammatory 51.8 9 0.00031 28.8 2.7 93 31-158 39-132 (147)
162 2oqg_A Possible transcriptiona 51.6 28 0.00095 24.5 5.3 38 179-217 23-60 (114)
163 2fbk_A Transcriptional regulat 51.4 10 0.00035 29.4 3.0 45 174-218 66-113 (181)
164 3kdg_A DNA mismatch repair pro 51.4 29 0.001 28.0 5.9 81 137-217 66-167 (197)
165 1y0u_A Arsenical resistance op 51.3 26 0.0009 24.3 5.0 37 179-217 33-69 (96)
166 1bjf_A Neurocalcin delta; calc 50.3 77 0.0026 23.7 8.7 29 45-78 30-59 (193)
167 1uhk_A Aequorin 2, aequorin; E 49.8 20 0.00069 26.9 4.5 31 116-150 124-154 (191)
168 1ku3_A Sigma factor SIGA; heli 49.6 49 0.0017 21.7 6.0 47 173-219 9-58 (73)
169 2xzm_8 RPS25E,; ribosome, tran 49.4 11 0.00039 29.8 2.9 29 190-218 62-90 (143)
170 1jba_A GCAP-2, protein (guanyl 48.3 65 0.0022 24.6 7.4 30 42-76 24-54 (204)
171 2x4h_A Hypothetical protein SS 48.2 37 0.0013 24.8 5.6 45 174-218 10-58 (139)
172 1q1h_A TFE, transcription fact 47.9 33 0.0011 24.3 5.2 39 180-218 21-60 (110)
173 2jt1_A PEFI protein; solution 47.7 15 0.00052 25.6 3.1 45 101-154 7-52 (77)
174 3hug_A RNA polymerase sigma fa 47.1 45 0.0015 23.0 5.7 45 174-219 37-81 (92)
175 2p7v_B Sigma-70, RNA polymeras 46.5 56 0.0019 21.0 5.9 47 174-220 5-54 (68)
176 1r1t_A Transcriptional repress 45.8 79 0.0027 23.1 7.2 59 137-217 27-85 (122)
177 2o8x_A Probable RNA polymerase 45.4 56 0.0019 20.7 5.7 45 174-219 15-59 (70)
178 2xvc_A ESCRT-III, SSO0910; cel 45.3 38 0.0013 22.8 4.6 35 182-216 15-50 (59)
179 4fx0_A Probable transcriptiona 45.3 35 0.0012 25.7 5.2 45 174-218 30-79 (148)
180 2pg4_A Uncharacterized protein 45.3 30 0.001 23.9 4.5 38 181-218 19-58 (95)
181 1y1x_A Leishmania major homolo 44.9 75 0.0026 24.2 7.3 40 108-157 135-175 (191)
182 3iz6_V 40S ribosomal protein S 44.9 13 0.00045 28.0 2.6 33 186-218 55-87 (108)
183 1alv_A Calpain, S-camld; calci 44.8 92 0.0031 23.0 7.8 95 27-157 64-158 (173)
184 2jjz_A Ionized calcium-binding 44.7 12 0.00042 28.1 2.5 90 35-159 45-135 (150)
185 1m45_A MLC1P, myosin light cha 44.2 14 0.00049 26.5 2.7 89 43-157 7-99 (148)
186 3jth_A Transcription activator 44.1 37 0.0012 23.5 4.8 38 179-217 25-62 (98)
187 1je8_A Nitrate/nitrite respons 43.7 64 0.0022 21.8 6.0 50 169-220 16-65 (82)
188 2k9l_A RNA polymerase sigma fa 43.6 41 0.0014 23.1 4.9 44 101-153 31-75 (76)
189 1x3u_A Transcriptional regulat 43.5 66 0.0023 21.0 5.9 45 174-220 16-60 (79)
190 2hpk_A Photoprotein berovin; s 43.4 29 0.00098 26.8 4.5 15 136-150 143-157 (208)
191 1bja_A Transcription regulator 42.9 55 0.0019 23.9 5.7 46 172-217 11-57 (95)
192 2ccm_A Calexcitin; EF hand, ca 42.7 66 0.0022 24.1 6.5 12 189-200 157-168 (191)
193 4fmr_A Uncharacterized hypothe 42.6 39 0.0013 29.1 5.6 52 113-169 28-85 (265)
194 1v4r_A Transcriptional repress 42.1 42 0.0015 23.6 5.0 72 94-176 11-83 (102)
195 3r07_C Putative lipoate-protei 41.9 23 0.00077 25.4 3.4 51 93-148 37-89 (91)
196 3sjs_A URE3-BP sequence specif 41.8 99 0.0034 24.4 7.7 34 40-78 51-84 (220)
197 2h09_A Transcriptional regulat 41.8 37 0.0013 25.4 4.9 36 183-218 46-81 (155)
198 3f2g_A Alkylmercury lyase; MER 41.2 27 0.00093 29.4 4.2 35 181-215 26-60 (220)
199 2vn2_A DNAD, chromosome replic 40.9 66 0.0023 23.9 6.1 45 174-218 29-78 (128)
200 1tty_A Sigma-A, RNA polymerase 40.9 79 0.0027 21.5 6.2 47 174-220 18-67 (87)
201 3u5c_Z RP45, S31, YS23, 40S ri 40.9 32 0.0011 25.9 4.2 29 189-217 57-85 (108)
202 1tiz_A Calmodulin-related prot 40.8 60 0.002 19.7 5.5 38 115-156 15-52 (67)
203 2qgq_A Protein TM_1862; alpha- 40.6 39 0.0013 28.7 5.3 49 138-190 136-184 (304)
204 3sg6_A Gcamp2, myosin light ch 40.6 80 0.0027 29.1 7.7 36 38-78 310-345 (450)
205 2ve8_A FTSK, DNA translocase F 40.1 46 0.0016 23.3 4.6 39 179-217 12-50 (73)
206 1hsj_A Fusion protein consisti 39.8 34 0.0012 30.5 5.0 46 172-217 399-446 (487)
207 3nso_A Protein S100-A3; EF-han 39.7 76 0.0026 22.7 6.1 42 116-157 27-69 (101)
208 3cs1_A Flagellar calcium-bindi 39.0 26 0.00089 27.7 3.7 38 37-79 45-83 (219)
209 3e3r_A Calcyphosin, calcyphosi 38.9 28 0.00096 26.5 3.8 38 36-78 33-70 (204)
210 4eto_A Protein S100-A4; calciu 38.9 61 0.0021 22.5 5.3 41 116-156 27-68 (93)
211 1z6r_A MLC protein; transcript 38.7 51 0.0017 28.9 5.9 40 179-218 18-57 (406)
212 1u2w_A CADC repressor, cadmium 38.7 59 0.002 23.7 5.4 38 179-216 44-81 (122)
213 2y75_A HTH-type transcriptiona 38.6 1.1E+02 0.0038 22.2 7.0 75 98-188 9-86 (129)
214 1ais_B TFB TFIIB, protein (tra 38.3 1.4E+02 0.0049 23.3 8.5 107 45-154 71-194 (200)
215 2r2i_A Guanylyl cyclase-activa 38.3 1.3E+02 0.0043 22.7 7.7 31 43-78 17-48 (198)
216 1k2h_A S100A1, S-100 protein, 38.1 47 0.0016 22.0 4.5 32 117-151 27-62 (93)
217 4dm9_A Ubiquitin carboxyl-term 37.9 15 0.00053 30.9 2.2 20 56-78 10-29 (228)
218 3c57_A Two component transcrip 37.7 72 0.0024 22.3 5.6 46 173-220 26-71 (95)
219 1tzy_D Histone H4-VI; histone- 37.7 77 0.0026 23.1 5.8 15 136-150 80-94 (103)
220 1p4x_A Staphylococcal accessor 37.5 48 0.0016 27.8 5.3 46 172-217 153-200 (250)
221 3pm8_A PFCDPK2, calcium-depend 37.5 37 0.0013 26.3 4.4 98 114-219 70-176 (197)
222 2znd_A Programmed cell death p 37.4 1.2E+02 0.0041 22.2 8.0 45 27-76 61-105 (172)
223 3b0c_W CENP-W, centromere prot 37.4 40 0.0014 23.2 4.0 35 93-150 36-70 (76)
224 4fxe_A Antitoxin RELB; toxin/a 37.3 17 0.00057 25.7 2.0 23 57-79 6-28 (79)
225 2l0k_A Stage III sporulation p 36.9 37 0.0013 24.5 3.9 36 178-214 8-43 (93)
226 1iyr_A DFF45, DNA fragmentatio 36.9 39 0.0013 25.4 4.0 35 182-219 39-73 (111)
227 1dgu_A Calcium-saturated CIB; 36.8 35 0.0012 25.6 4.0 13 189-201 157-169 (183)
228 3nr7_A DNA-binding protein H-N 36.3 55 0.0019 23.5 4.7 47 32-78 26-75 (86)
229 2o34_A Hypothetical protein; s 36.1 58 0.002 27.7 5.6 53 33-85 47-108 (250)
230 1xd3_A Ubiquitin carboxyl-term 36.1 18 0.0006 30.6 2.3 20 56-78 8-27 (230)
231 3txn_A 26S proteasome regulato 36.1 2.4E+02 0.0082 25.3 10.8 71 117-196 316-386 (394)
232 1xk4_C Calgranulin B; S100 fam 35.6 1E+02 0.0035 21.9 6.3 77 33-130 5-85 (113)
233 2obp_A Putative DNA-binding pr 35.3 75 0.0026 23.1 5.4 43 175-217 14-62 (96)
234 2wdt_A Ubiquitin carboxyl-term 35.1 18 0.00063 30.6 2.3 21 56-79 9-29 (232)
235 3rii_A Ubiquitin carboxyl-term 34.9 16 0.00055 31.0 1.8 21 56-79 15-35 (233)
236 2aao_A CDPK, calcium-dependent 34.6 86 0.0029 22.7 5.8 36 39-79 26-61 (166)
237 3n22_A Protein S100-A2; EF-han 34.6 31 0.0011 24.5 3.2 46 111-156 23-69 (98)
238 2lf3_A Effector protein hopab3 34.3 1.2E+02 0.0042 22.5 6.3 60 15-81 21-83 (107)
239 2k9l_A RNA polymerase sigma fa 34.3 49 0.0017 22.7 4.0 28 187-214 42-71 (76)
240 3hot_A Transposable element ma 34.0 1.7E+02 0.0057 24.5 8.3 85 119-214 24-109 (345)
241 3tl8_B Effector protein hopab2 33.9 1.1E+02 0.0036 23.2 6.0 60 15-81 27-89 (117)
242 1h8b_A ACT-EF34, alpha-actinin 33.8 27 0.00091 24.0 2.6 26 188-219 22-47 (75)
243 1b67_A Protein (histone HMFA); 33.8 42 0.0014 22.3 3.6 16 136-151 53-68 (68)
244 4ham_A LMO2241 protein; struct 33.6 1.4E+02 0.0049 21.9 9.9 67 95-172 15-82 (134)
245 3zwh_A Protein S100-A4; Ca-bin 33.5 94 0.0032 22.2 5.7 42 115-156 29-71 (104)
246 2xns_C RGS14, regulator of G-p 33.3 36 0.0012 21.0 2.7 28 122-149 4-35 (40)
247 2y5i_A S100Z, S100 calcium bin 33.0 64 0.0022 22.6 4.7 45 112-156 23-68 (99)
248 2sas_A Sarcoplasmic calcium-bi 32.8 62 0.0021 23.8 4.8 19 182-200 144-164 (185)
249 1r7j_A Conserved hypothetical 32.6 73 0.0025 22.6 4.9 34 182-217 13-46 (95)
250 2l76_A Nfatc2-interacting prot 31.8 20 0.00067 26.5 1.6 25 56-80 36-60 (95)
251 3rm1_A Protein S100-B; alpha-h 31.7 1.2E+02 0.0041 20.5 6.5 70 34-130 3-81 (92)
252 1uly_A Hypothetical protein PH 31.7 70 0.0024 25.6 5.2 41 176-217 19-59 (192)
253 1nya_A Calerythrin; EF-hand, m 31.6 1.4E+02 0.0049 21.5 6.7 48 104-157 104-152 (176)
254 3go5_A Multidomain protein wit 31.4 78 0.0027 27.3 5.7 45 174-218 221-272 (285)
255 1r42_A Angiotensin I convertin 31.4 70 0.0024 30.2 5.9 63 67-150 526-591 (615)
256 3to7_A Histone acetyltransfera 31.4 1.3E+02 0.0043 26.2 7.0 55 102-176 197-251 (276)
257 3g9k_L Capsule biosynthesis pr 31.2 40 0.0014 29.9 3.9 27 91-126 189-216 (323)
258 1gjy_A Sorcin, CP-22, V19; cal 31.2 1.1E+02 0.0039 22.3 6.1 94 27-157 59-152 (167)
259 2l2e_A Calcium-binding protein 31.1 1.6E+02 0.0055 21.8 7.8 15 189-203 161-175 (190)
260 2b1u_A Calmodulin-like protein 30.9 94 0.0032 19.0 5.6 41 112-156 16-57 (71)
261 1jko_C HIN recombinase, DNA-in 30.7 82 0.0028 18.3 4.5 38 172-211 3-41 (52)
262 1z05_A Transcriptional regulat 30.6 63 0.0021 28.7 5.2 40 179-218 41-80 (429)
263 2ou2_A Histone acetyltransfera 30.6 57 0.002 28.5 4.7 45 101-154 194-240 (280)
264 1avs_A Troponin C; muscle cont 30.6 1.1E+02 0.0039 19.9 5.9 38 115-156 34-71 (90)
265 2lnk_A Protein S100-A4; EF-han 30.5 55 0.0019 24.0 4.0 43 114-156 37-80 (113)
266 1ug2_A 2610100B20RIK gene prod 30.3 1.2E+02 0.0042 22.2 5.7 44 177-220 39-85 (95)
267 2ggz_A Guanylyl cyclase-activa 30.2 1E+02 0.0034 23.9 5.8 14 189-202 149-162 (211)
268 3f8t_A Predicted ATPase involv 30.1 44 0.0015 31.6 4.1 76 60-152 395-485 (506)
269 2ehb_A Calcineurin B-like prot 30.1 1.1E+02 0.0037 23.3 5.9 23 38-60 35-59 (207)
270 2y75_A HTH-type transcriptiona 29.9 1E+02 0.0035 22.4 5.5 29 189-217 24-52 (129)
271 1stz_A Heat-inducible transcri 29.8 83 0.0028 27.6 5.7 43 175-217 15-64 (338)
272 1cmx_A Protein (ubiquitin YUH1 29.8 23 0.00079 30.1 2.0 21 55-78 9-29 (235)
273 1ufm_A COP9 complex subunit 4; 29.8 69 0.0024 22.5 4.3 36 183-218 22-57 (84)
274 1k94_A Grancalcin; penta-EF-ha 29.7 1.6E+02 0.0055 21.3 8.6 94 27-157 57-150 (165)
275 1s6j_A CDPK, calcium-dependent 29.5 94 0.0032 20.0 4.9 40 113-156 35-74 (87)
276 3ll8_B Calcineurin subunit B t 29.3 1.1E+02 0.0039 21.5 5.7 12 189-200 130-141 (155)
277 2qvo_A Uncharacterized protein 29.2 81 0.0028 21.7 4.6 43 175-217 10-56 (95)
278 3mzy_A RNA polymerase sigma-H 29.2 95 0.0033 22.5 5.3 44 174-219 109-152 (164)
279 1p4w_A RCSB; solution structur 28.9 1.1E+02 0.0039 21.7 5.5 47 172-220 32-78 (99)
280 1rp3_A RNA polymerase sigma fa 28.8 1.2E+02 0.004 23.6 6.0 45 174-219 187-231 (239)
281 2k6x_A Sigma-A, RNA polymerase 28.7 1E+02 0.0034 20.8 4.9 34 182-215 14-52 (72)
282 2dk8_A DNA-directed RNA polyme 28.5 1.4E+02 0.0049 21.0 5.7 40 179-218 16-57 (81)
283 2x48_A CAG38821; archeal virus 28.4 1E+02 0.0035 18.7 6.9 49 159-212 4-52 (55)
284 1sjj_A Actinin; 3-helix bundle 28.3 1.9E+02 0.0064 27.9 8.5 99 108-218 731-834 (863)
285 2lf6_A Effector protein hopab1 28.1 99 0.0034 22.8 4.9 60 15-81 10-72 (101)
286 1i4d_A Arfaptin 2, partner of 28.1 1.2E+02 0.0041 25.4 6.2 48 14-61 149-203 (224)
287 2p2u_A HOST-nuclease inhibitor 28.0 1.5E+02 0.0051 23.5 6.5 31 30-60 52-82 (171)
288 2pju_A Propionate catabolism o 28.0 2.5E+02 0.0086 23.1 8.7 145 58-217 19-193 (225)
289 2pi2_A Replication protein A 3 27.9 13 0.00043 31.8 0.0 45 174-218 204-252 (270)
290 1e5p_A Aphrodisin; lipocalin, 27.6 34 0.0012 25.5 2.5 20 59-78 118-137 (151)
291 3ihr_A Ubiquitin carboxyl-term 27.4 24 0.00081 31.5 1.7 21 56-79 10-30 (328)
292 3ll8_B Calcineurin subunit B t 27.3 1.6E+02 0.0056 20.6 10.7 39 108-149 81-120 (155)
293 3rm1_A Protein S100-B; alpha-h 27.2 1.4E+02 0.0049 20.1 5.6 39 116-154 26-65 (92)
294 1z7u_A Hypothetical protein EF 27.0 1.5E+02 0.0053 20.9 6.0 36 181-217 26-62 (112)
295 3m2p_A UDP-N-acetylglucosamine 27.0 1.3E+02 0.0044 24.6 6.2 76 136-220 198-294 (311)
296 2joj_A Centrin protein; N-term 26.9 1.2E+02 0.0041 18.9 5.3 38 115-156 21-58 (77)
297 2f3o_A PFLD, PFL2, pyruvate fo 26.9 3.9E+02 0.013 26.3 10.5 80 60-150 225-307 (776)
298 2lvv_A Flagellar calcium-bindi 26.9 1.6E+02 0.0055 23.1 6.6 38 38-80 49-87 (226)
299 3t72_q RNA polymerase sigma fa 26.8 1.5E+02 0.0051 21.2 5.8 46 174-219 19-67 (99)
300 1or7_A Sigma-24, RNA polymeras 26.5 1.4E+02 0.0047 22.5 5.9 45 174-219 140-184 (194)
301 3rkx_A Biotin-[acetyl-COA-carb 26.4 1.5E+02 0.0052 25.7 6.8 65 101-179 6-71 (323)
302 2rnj_A Response regulator prot 26.2 96 0.0033 21.2 4.5 47 172-220 27-73 (91)
303 3bz6_A UPF0502 protein pspto_2 26.1 2.7E+02 0.0091 22.7 9.6 98 118-217 46-153 (183)
304 1k9u_A Polcalcin PHL P 7; poll 26.0 1.3E+02 0.0044 19.0 5.6 30 116-150 18-47 (78)
305 2l02_A Uncharacterized protein 25.9 1.2E+02 0.004 21.7 4.9 38 181-218 12-49 (82)
306 3ulq_B Transcriptional regulat 25.9 1.7E+02 0.0057 20.3 6.0 47 172-220 27-73 (90)
307 4a8e_A XER A, probable tyrosin 25.7 1.1E+02 0.0037 24.4 5.4 74 61-156 206-282 (292)
308 2of5_H Leucine-rich repeat and 25.7 1E+02 0.0036 22.7 4.9 80 56-150 5-96 (118)
309 2zfd_A Calcineurin B-like prot 25.5 1.8E+02 0.0063 22.6 6.7 22 39-60 47-70 (226)
310 1tc3_C Protein (TC3 transposas 25.4 99 0.0034 17.5 5.3 39 172-212 3-42 (51)
311 1msz_A DNA-binding protein smu 25.4 87 0.003 22.5 4.1 38 42-79 21-62 (86)
312 2iie_A Integration HOST factor 25.3 78 0.0027 25.9 4.5 52 95-151 19-75 (204)
313 1q7e_A Hypothetical protein YF 25.2 1.2E+02 0.0041 27.7 6.1 70 67-145 279-348 (428)
314 3pqk_A Biofilm growth-associat 25.2 1.1E+02 0.0039 21.0 4.8 36 181-217 27-62 (102)
315 2opo_A Polcalcin CHE A 3; calc 25.1 1.4E+02 0.0048 19.1 5.8 37 115-156 25-61 (86)
316 3khe_A Calmodulin-like domain 25.0 2.1E+02 0.007 21.0 8.6 93 99-199 84-181 (191)
317 3dpl_C Cullin-5; ubiquitin, NE 25.0 1.3E+02 0.0045 26.7 6.2 61 152-216 178-240 (382)
318 2fi0_A Conserved domain protei 25.0 36 0.0012 23.6 2.0 38 109-160 41-78 (81)
319 2b0l_A GTP-sensing transcripti 24.9 65 0.0022 23.2 3.5 29 190-218 41-70 (102)
320 2o03_A Probable zinc uptake re 24.9 1.3E+02 0.0045 22.1 5.4 47 100-154 13-59 (131)
321 1m45_A MLC1P, myosin light cha 24.7 1.7E+02 0.006 20.4 5.9 45 108-156 89-134 (148)
322 3sao_A Extracellular fatty aci 24.7 38 0.0013 25.7 2.3 21 59-79 120-140 (160)
323 2kax_A Protein S100-A5; EF-han 24.6 84 0.0029 21.3 3.9 42 113-156 24-65 (92)
324 2ozu_A Histone acetyltransfera 24.5 49 0.0017 29.0 3.1 41 102-154 202-242 (284)
325 1sjj_A Actinin; 3-helix bundle 24.5 65 0.0022 31.2 4.4 42 112-157 771-813 (863)
326 2dod_A Transcription elongatio 24.3 45 0.0015 23.6 2.4 20 62-81 18-37 (82)
327 2qc0_A Uncharacterized protein 24.3 65 0.0022 28.5 4.0 40 179-218 299-338 (373)
328 2d8n_A Recoverin; structural g 24.0 2.3E+02 0.008 21.3 7.3 38 115-156 85-122 (207)
329 2fe3_A Peroxide operon regulat 23.8 1.4E+02 0.0047 22.4 5.4 47 100-154 24-70 (145)
330 3pm8_A PFCDPK2, calcium-depend 23.7 52 0.0018 25.5 3.0 34 39-77 56-89 (197)
331 1s6c_A KV4 potassium channel-i 23.7 2.2E+02 0.0074 20.8 6.9 17 189-205 154-170 (183)
332 1sfu_A 34L protein; protein/Z- 23.7 1.7E+02 0.0058 20.4 5.3 40 178-217 13-55 (75)
333 2kn2_A Calmodulin; S MAPK phos 23.6 1.6E+02 0.0054 19.2 5.9 38 115-156 23-60 (92)
334 3f6o_A Probable transcriptiona 23.5 1.4E+02 0.0047 21.3 5.2 37 180-217 21-57 (118)
335 1bj7_A D 2; allergen, lipocali 23.5 43 0.0015 25.1 2.3 20 59-78 123-142 (156)
336 2wcb_A Protein S100-A12; calci 23.5 1E+02 0.0034 21.2 4.2 45 112-156 25-70 (95)
337 1c7v_A CAVP, calcium vector pr 23.4 66 0.0022 20.6 3.0 33 116-151 23-55 (81)
338 2hoe_A N-acetylglucosamine kin 23.2 73 0.0025 27.8 4.1 37 181-218 24-60 (380)
339 1dzk_A PIG OBP, odorant-bindin 23.1 47 0.0016 24.8 2.5 20 59-78 124-143 (157)
340 2yfw_B Histone H4, H4; cell cy 22.8 1.8E+02 0.0062 21.0 5.6 15 136-150 80-94 (103)
341 2d58_A Allograft inflammatory 22.8 1.9E+02 0.0063 19.7 5.9 39 114-156 45-83 (107)
342 2xub_A DNA-directed RNA polyme 22.7 4.5E+02 0.015 24.2 10.4 116 97-218 260-401 (534)
343 1ylf_A RRF2 family protein; st 22.7 2.1E+02 0.0072 21.4 6.3 72 100-188 16-89 (149)
344 1ldj_A Cullin homolog 1, CUL-1 22.7 1.2E+02 0.0042 29.4 6.0 62 152-217 568-629 (760)
345 1j09_A Glutamyl-tRNA synthetas 22.3 1.7E+02 0.006 26.9 6.7 62 42-106 19-99 (468)
346 3f1i_H Hepatocyte growth facto 22.2 1.9E+02 0.0065 21.3 5.5 38 32-70 6-43 (98)
347 2k9m_A RNA polymerase sigma fa 22.1 1.1E+02 0.0039 23.1 4.5 45 101-154 22-67 (130)
348 5pal_A Parvalbumin; calcium-bi 22.0 1.8E+02 0.0063 19.5 5.4 37 115-152 55-91 (109)
349 2ktg_A Calmodulin, putative; e 21.9 1.6E+02 0.0055 18.7 6.0 41 112-156 24-65 (85)
350 2hlv_A Odorant-binding protein 21.6 52 0.0018 24.8 2.5 20 59-78 125-144 (160)
351 2hzt_A Putative HTH-type trans 21.5 1.6E+02 0.0055 20.6 5.1 35 182-217 19-54 (107)
352 1j55_A S-100P protein; metal b 21.5 92 0.0031 21.4 3.7 41 115-155 25-66 (95)
353 3t8r_A Staphylococcus aureus C 21.4 2.3E+02 0.0077 21.3 6.2 76 97-188 10-88 (143)
354 3nxa_A Protein S100-A16; S100 21.4 1.8E+02 0.006 20.4 5.2 41 116-156 29-70 (100)
355 2cq8_A 10-formyltetrahydrofola 21.3 83 0.0028 23.3 3.5 6 93-99 48-53 (110)
356 1r9d_A Glycerol dehydratase; r 21.2 2.8E+02 0.0095 27.4 8.2 108 44-165 213-347 (787)
357 3kff_A MUP 4, major urinary pr 21.2 53 0.0018 24.9 2.5 20 59-78 126-145 (162)
358 3k69_A Putative transcription 21.1 1.7E+02 0.0058 22.6 5.5 73 98-187 12-87 (162)
359 3hdi_A Processing protease; CA 21.1 85 0.0029 26.9 4.1 40 115-164 364-403 (421)
360 1taf_A TFIID TBP associated fa 20.7 1.3E+02 0.0045 20.5 4.1 59 67-149 7-65 (68)
361 3fse_A Two-domain protein cont 20.4 1.8E+02 0.0061 25.9 6.1 25 43-72 226-250 (365)
362 3skq_A Mitochondrial distribut 20.3 2.2E+02 0.0075 24.3 6.4 94 45-149 81-177 (249)
363 2fu4_A Ferric uptake regulatio 20.2 1.8E+02 0.0061 19.1 4.8 47 101-154 20-66 (83)
364 1fad_A Protein (FADD protein); 20.2 38 0.0013 24.1 1.3 69 54-130 4-84 (99)
365 3e3r_A Calcyphosin, calcyphosi 20.1 2.1E+02 0.0072 21.3 5.8 14 189-202 123-136 (204)
366 1qx2_A Vitamin D-dependent cal 20.1 1.4E+02 0.0048 18.5 4.1 14 116-129 22-35 (76)
367 3t8r_A Staphylococcus aureus C 20.1 1.5E+02 0.0053 22.2 5.0 35 183-217 18-54 (143)
368 4etr_A Putative uncharacterize 20.1 2.4E+02 0.0083 21.3 6.2 49 30-80 11-73 (153)
369 3lwf_A LIN1550 protein, putati 20.0 1.7E+02 0.0058 22.7 5.3 37 181-217 32-70 (159)
No 1
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=100.00 E-value=1.6e-79 Score=532.63 Aligned_cols=207 Identities=31% Similarity=0.644 Sum_probs=185.4
Q ss_pred CCCcchhHhhccHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCC-
Q 027597 2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA- 80 (221)
Q Consensus 2 rR~~Gi~ai~~~~~~~~~~~~~g~~l~~~~~~~l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~- 80 (221)
|||+||+||+ ++++++|+++|.+++++|+++|++||++||++|++||++|++||++||+||++|++||++||||||+
T Consensus 1 rr~~G~~a~~--~~~~~~~~~~g~~l~~~~~~~l~~Ql~~F~~~L~~FA~kHk~eI~~dp~fR~~F~~mc~siGVDPLa~ 78 (233)
T 1u5t_A 1 MKQFGLAAFD--ELKDGKYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSL 78 (233)
T ss_dssp ---------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCCccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccCHHHHHHHHHHHHHcCCCCCcc
Confidence 6889999999 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCccchHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEE
Q 027597 81 SNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVI 160 (221)
Q Consensus 81 s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi 160 (221)
|+|| +++||+|||||||||||||||++||++|||||+|+||+|+|+|+ +.||||||+|||++|++| +||+++
T Consensus 79 s~kg--~~~lg~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~-----~~IS~dDi~rAik~L~~L-~gf~v~ 150 (233)
T 1u5t_A 79 FDRD--KHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRK-----LNVGLDDLEKSIDMLKSL-ECFEIF 150 (233)
T ss_dssp TTSS--GGGTTHHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTT-----TTCCHHHHHHHHHHHTTT-CCCCEE
T ss_pred CCcc--ccccCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhh-----cCCCHHHHHHHHHHhhhc-cCeEEE
Confidence 9999 89999999999999999999999999999999999999999997 689999999999999999 999999
Q ss_pred EeCCEEEEEecCcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 161 SVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 161 ~i~~~~~v~Svp~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
+++|++||||||.|||+||+.||++|+..||||+++|++++||++.||+.+|++|+++
T Consensus 151 ~v~g~~~vqsvp~el~~D~~~vLe~a~~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~ 208 (233)
T 1u5t_A 151 QIRGKKFLRSVPNELTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVAN 208 (233)
T ss_dssp EETTEEEECCSSSCCCTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHT
T ss_pred EECCEEEEEeCCCccchHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999986
No 2
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=100.00 E-value=1.6e-78 Score=526.37 Aligned_cols=195 Identities=53% Similarity=0.923 Sum_probs=184.1
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHH
Q 027597 24 GENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQI 103 (221)
Q Consensus 24 g~~l~~~~~~~l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqI 103 (221)
|.+++++|+++|++||++||++|++||+||++||++||+||++|++||++||||||+++||||+++||+|||||||||||
T Consensus 1 g~~l~~~~~~~~~~Ql~~F~~~L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqI 80 (234)
T 3cuq_A 1 GTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQI 80 (234)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecCcccchhHHHHH
Q 027597 104 VEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQIL 183 (221)
Q Consensus 104 vevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp~Els~D~~~vl 183 (221)
||||++||++|||||+|+||+|+++|+||+.++.||||||+|||++|++||+||+|+++||++||||||.|||+||++||
T Consensus 81 vEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~LG~g~~v~~~~g~~~VqSvp~el~~D~~~vL 160 (234)
T 3cuq_A 81 IEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVL 160 (234)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGGBTTCEEEEETTEEEEECSCCCCCHHHHHHH
T ss_pred HHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHHhcCCCeEEEEECCEEEEEeCCCccchHHHHHH
Confidence 99999999999999999999999999999877899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 184 ELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 184 el~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
++|+..||||+++|++++||++.||+.+|++|+++
T Consensus 161 ela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 195 (234)
T 3cuq_A 161 QLAEKNGYVTVSEIKASLKWETERARQVLEHLLKE 195 (234)
T ss_dssp HHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999986
No 3
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=100.00 E-value=1.3e-48 Score=336.38 Aligned_cols=178 Identities=16% Similarity=0.236 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHhhcccccChhHHHHHHHHHHHcCCC-CCCCCCCccccccCccchHHHHHHHHH
Q 027597 32 TDLMKEQLATFRS------QLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVD-PLASNKGFWAELLGIGDFYYELGVQIV 104 (221)
Q Consensus 32 ~~~l~~ql~~F~~------~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVD-PL~s~k~~ws~~lG~gdfy~eLavqIv 104 (221)
|++|+..|..+++ ++.....+.++++++|++- +|++||++|||| |+++ ++||+ .+||||||||||+
T Consensus 10 f~DL~~LM~~Ak~mv~la~~~~~~~~~~~~~~~~~e~~--~f~~m~~slGvd~Pl~~-~~~~s----~~~f~~ELa~qi~ 82 (218)
T 3cuq_B 10 FEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETI--RFKSYLLSMGIANPVTR-ETYGS----GTQYHMQLAKQLA 82 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCC----------CCSH--HHHHHHHHHTCCCHHHH-TTSSC----SCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHH--HHHHHHHHcCCCCcchh-hccCc----ccHHHHHHHHHHH
Confidence 6777777777776 2333333445566667754 699999999999 7776 58997 6999999999999
Q ss_pred HHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeC-CEEEEEecCcccchhHHHHH
Q 027597 105 EICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQIL 183 (221)
Q Consensus 105 evC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~-~~~~v~Svp~Els~D~~~vl 183 (221)
|+|.++++.|||||+|.||+|++||+||. ++|||+||++||++|++||.||++++|+ |+++|||+|.+++.||++|+
T Consensus 83 e~c~~~~~~~GG~I~L~dl~~~~nraRG~--~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il 160 (218)
T 3cuq_B 83 GILQVPLEERGGIMSLTEVYCLVNRARGM--ELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASAL 160 (218)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHHHTCSS--SCCCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCCGGGGHHHHH
T ss_pred HHHHHHHHhCCCeEEHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCchHHHHHHHH
Confidence 99999999999999999999999999996 8999999999999999999999999998 89999999999999999999
Q ss_pred HHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 184 ELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 184 el~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
++++..||||+++|++++||+..||+.+|+.++++
T Consensus 161 ~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~ 195 (218)
T 3cuq_B 161 ETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKM 195 (218)
T ss_dssp HHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999875
No 4
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=100.00 E-value=3.4e-36 Score=288.14 Aligned_cols=199 Identities=17% Similarity=0.148 Sum_probs=121.3
Q ss_pred CCcchhHhhccHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHH------HHHHHHHHhhcccccChh--HHHHHHHHHHHc
Q 027597 3 RRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRS------QLEDFARKHKNDIRKNPT--FRSQFHEMCAKV 74 (221)
Q Consensus 3 R~~Gi~ai~~~~~~~~~~~~~g~~l~~~~~~~l~~ql~~F~~------~L~~Fa~kh~~eI~~dp~--fR~~F~~mC~si 74 (221)
+++||+||+++.+++.+-++...+-+ |++|++.|+.+++ .+....++.++.|..|.+ =..+|+.++
T Consensus 321 ~~~GI~gler~~e~~~~~~~~~i~~A---f~DL~~LM~~AkemV~La~~~~~~~~~~~~~~s~~~~~~e~~~~~s~L--- 394 (566)
T 1w7p_D 321 SRIGISSLEKSRENQLLNNDILFNNA---LTDLNKLMSLATSIERLYKNSNITMKTKTLNLQDESTVNEPKTRRPLL--- 394 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhhHhhHhhc---
Confidence 45899999999998888888877777 7788888888876 344444444456654422 112566665
Q ss_pred CCCCCCCCCCccccccC-ccchHHHHHHHHHHHhhhhc----cc-CCCcccHHHHHHHHHhh-cCCCCCCCCHHHHHHHH
Q 027597 75 GVDPLASNKGFWAELLG-IGDFYYELGVQIVEICLATR----PH-NGGLINLQELCNLLRQR-RKSNREAVSEDDCLRAI 147 (221)
Q Consensus 75 GVDPL~s~k~~ws~~lG-~gdfy~eLavqIvevC~~tr----~~-nGGli~l~el~~~v~k~-Rg~~~~~IS~~DI~rAi 147 (221)
|++.. ++| .++||||||+||+|+|.+++ ++ |||||+|.||++++||+ |+. .++|||+||++||
T Consensus 395 ---~Vtrd------~~~s~~~f~~ELA~qI~E~c~~~~~~~l~~~nGGmItL~DL~~~~NRa~R~g-~elISp~Dll~A~ 464 (566)
T 1w7p_D 395 ---ILDRE------KFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIG-TGLISPMEMREAC 464 (566)
T ss_dssp ----CCSS------CCCCHHHHHHHHHHHHHHHHHHTTCCSSCSCCCCEEEHHHHHHHHHHHTTTT-TCCCCHHHHHHHH
T ss_pred ---ccchh------hcCChhHHHHHHHHHHHHHHHhhhcccchhcCcCeEEHHHHHHHHHHhccCC-CCccCHHHHHHHH
Confidence 55533 444 48999999999999999999 88 99999999999999999 953 2899999999999
Q ss_pred hhccccCCCeE-EEEeCCEEEEEecCcccchhHHHHHHHHHhcCCccHHHHHHhcC-------CCHHHHHHHHHHHHHH
Q 027597 148 SKLKVLGNGYE-VISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLS-------WTSGRAIDALDILLEV 218 (221)
Q Consensus 148 ~~L~~LG~g~~-vi~i~~~~~v~Svp~Els~D~~~vlel~~~~G~vt~~~L~~~l~-------W~~~Ra~~~L~~l~~~ 218 (221)
++|++||.||. |++|+++.+|+++|.+ +.|+++|+++++..||||+.+|++++| |+..||+.+|+.|++|
T Consensus 465 ~~le~Lg~~~~~L~~~~sgvlVvs~~~~-~~~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~e 542 (566)
T 1w7p_D 465 ERFEHLGLNELKLVKVNKRILCVTSEKF-DVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDE 542 (566)
T ss_dssp TTGGGGTCTTCEEEECSSSCEEEESSCH-HHHHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCeEEEEEECCEEEEEcCCCc-hHHHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHc
Confidence 99999999999 9999876777799999 999999999999999999999999999 9999999999999876
No 5
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=99.97 E-value=8.6e-32 Score=223.54 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=109.7
Q ss_pred cchHHHHHHHHHHHhh---h-hcccCCC-cccHHHHHHHHHhh-cCCCCCCCCHHHHHHHHhhccccCCC-eEEEEeCCE
Q 027597 93 GDFYYELGVQIVEICL---A-TRPHNGG-LINLQELCNLLRQR-RKSNREAVSEDDCLRAISKLKVLGNG-YEVISVGKK 165 (221)
Q Consensus 93 gdfy~eLavqIvevC~---~-tr~~nGG-li~l~el~~~v~k~-Rg~~~~~IS~~DI~rAi~~L~~LG~g-~~vi~i~~~ 165 (221)
++||||||+||+|+|. + +++.||| ||+|.||+|++||+ |+. .++|||+|+++||++|++||.| |+++++++.
T Consensus 10 ~~f~~ELa~qi~e~c~~~~~~~~~~~GG~~I~L~dl~~~~nra~R~g-~~lISp~Dl~~A~~~l~~Lg~~~~~l~~~~sg 88 (169)
T 1u5t_B 10 ELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIG-TGLISPMEMREACERFEHLGLNELKLVKVNKR 88 (169)
T ss_dssp TTHHHHHHHHHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSS-SCCCCHHHHHHHHTTTGGGTCCSCEEEEETTT
T ss_pred hHHHHHHHHHHHHHHhhcchhhHHhcCceeEEHHHHHHHHHHhhcCC-CCccCHHHHHHHHHHHHhcCCCeEEEEEECCe
Confidence 6999999999999999 7 9999999 99999999999999 952 3899999999999999999999 999999955
Q ss_pred EEEEecCcccchhH--HHHHHHHHhc-CC----ccHH-H-HHHhcCCCHHHHHHHHHHHHHH
Q 027597 166 KLVRSVPTELNKDH--NQILELAQAQ-GF----VTVD-E-VERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 166 ~~v~Svp~Els~D~--~~vlel~~~~-G~----vt~~-~-L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.+|+ .+.+.|+ +.++++++.. |+ ||++ + +++++||+..||+.+|+.++++
T Consensus 89 ~~V~---~~~~~d~~~~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~ 147 (169)
T 1u5t_B 89 ILCV---TSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDE 147 (169)
T ss_dssp EEEE---ESSCSHHHHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred eEEE---eCCChhHHHHHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 5444 2334444 9999999985 99 9999 9 9999999999999999999876
No 6
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=94.34 E-value=0.14 Score=38.85 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecCcccc
Q 027597 97 YELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELN 176 (221)
Q Consensus 97 ~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp~Els 176 (221)
-.+..+|++.+.+ .| .+..|+...+. ++++.+.+.++.|...|. ++.+.+-.|+. |.-+.
T Consensus 6 ~~l~~~i~~~~~~-----~p-~~~~~la~~~~---------~~~~~~~~~l~~l~~~G~---l~~i~~~~~~~--~~~~~ 65 (121)
T 2pjp_A 6 QAIWQKAEPLFGD-----EP-WWVRDLAKETG---------TDEQAMRLTLRQAAQQGI---ITAIVKDRYYR--NDRIV 65 (121)
T ss_dssp HHHHHHHGGGCSS-----SC-EEHHHHHHHTT---------CCHHHHHHHHHHHHHTTS---EEEEETTEEEE--HHHHH
T ss_pred HHHHHHHHHHHHh-----CC-CCHHHHHHHhC---------CCHHHHHHHHHHHHHCCC---EEEecCCceEC--HHHHH
Confidence 3455566666643 33 47777776644 789999888888888773 55554333332 22233
Q ss_pred hhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHH
Q 027597 177 KDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDIL 215 (221)
Q Consensus 177 ~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l 215 (221)
.=-..+.++++..|.+|+.++++.+|.++-.|...||.|
T Consensus 66 ~~~~~l~~~~~~~~~it~ae~Rd~lg~sRK~ai~lLE~~ 104 (121)
T 2pjp_A 66 EFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYF 104 (121)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHCCcHHHHHHHHHHH
Confidence 334456778888999999999999999999999999887
No 7
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=93.94 E-value=0.2 Score=40.64 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=76.4
Q ss_pred HHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc----cCCCeEEEEeCCEEEEEecCc----
Q 027597 102 QIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV----LGNGYEVISVGKKKLVRSVPT---- 173 (221)
Q Consensus 102 qIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~----LG~g~~vi~i~~~~~v~Svp~---- 173 (221)
.++|..+=.. |-=+++++|...+. ..+++++|..++..|+. -|.||+|+.++|..-+++-|.
T Consensus 10 ~~iEAlLf~~---~~pvs~~~La~~~~-------~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~ 79 (162)
T 1t6s_A 10 RSLEALIFSS---EEPVNLQTLSQITA-------HKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADL 79 (162)
T ss_dssp HHHHHHHHHC---SSCBCHHHHHHHTT-------CCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHH
T ss_pred HHHHHHHHHc---CCCCCHHHHHHHhC-------cCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHH
Confidence 4566655544 32388888887764 23799999999999963 389999999999998988764
Q ss_pred -----------ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 -----------ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 -----------Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.||.-...+|.++.-++-||-.+|.+..|-+ +..+++.|+.
T Consensus 80 v~~~~~~~~~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~---~~~~v~~L~e 131 (162)
T 1t6s_A 80 VRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS---PDYSIDRLLA 131 (162)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC---CCSHHHHHHH
T ss_pred HHHHhcccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC---HHHHHHHHHH
Confidence 2333334467777778999999999999988 6667777654
No 8
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=93.63 E-value=1.1 Score=38.03 Aligned_cols=102 Identities=11% Similarity=0.045 Sum_probs=78.4
Q ss_pred HHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc----cCCCeEEEEeCCEEEEEecCc---
Q 027597 101 VQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV----LGNGYEVISVGKKKLVRSVPT--- 173 (221)
Q Consensus 101 vqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~----LG~g~~vi~i~~~~~v~Svp~--- 173 (221)
..++|..+=.. |-=+++.+|...+. +++++|..++..|+. -+.||+|+.++|.+.+++-|.
T Consensus 17 ~~~iEAlLf~a---~epvs~~~La~~l~---------~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~ 84 (219)
T 2z99_A 17 KRVLEALLLVI---DTPVTADALAAATE---------QPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAP 84 (219)
T ss_dssp HHHHHHHHHHC---SSCBCHHHHHHHHT---------SCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHH
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHC---------cCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHH
Confidence 35677666654 33389999887763 688999999999953 489999999999888887653
Q ss_pred ------------ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ------------ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 ------------Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.||.-...+|.++.-++-||-.+|.+..|-+. ..+++.|+.
T Consensus 85 ~v~~~~~~~~~~~Ls~aaLEtLaiIAy~QPITR~eI~~irGv~~---~~~v~~Lle 137 (219)
T 2z99_A 85 YVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNV---DAVMRTLLA 137 (219)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCC---HHHHHHHHH
T ss_pred HHHHHhcccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCCH---HHHHHHHHH
Confidence 35544455788888789999999999999987 456666654
No 9
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=93.59 E-value=0.11 Score=35.63 Aligned_cols=37 Identities=27% Similarity=0.456 Sum_probs=31.0
Q ss_pred HHHH-HHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 182 ILEL-AQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 182 vlel-~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
+|.+ ++..-..|+.+++..+||+-++|+.+||+|..+
T Consensus 8 LLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~ 45 (68)
T 3i71_A 8 LLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSA 45 (68)
T ss_dssp HHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhc
Confidence 4444 445677899999999999999999999999764
No 10
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=92.95 E-value=2.4 Score=36.00 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=73.4
Q ss_pred ccchHHHHHHHHHHHhhhhcccCCCcc--cHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEE
Q 027597 92 IGDFYYELGVQIVEICLATRPHNGGLI--NLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVR 169 (221)
Q Consensus 92 ~gdfy~eLavqIvevC~~tr~~nGGli--~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~ 169 (221)
..+-+-.+..+|.+.+.+ +|+- .+.|+...+ .+.++++...++.|...| .|+.+.+..|+-
T Consensus 135 ~~~~~~~~~~~i~~~~~~-----~g~~pp~~~dl~~~l---------~~~~~~~~~~l~~l~~~g---~lv~l~~~~~~~ 197 (258)
T 1lva_A 135 FSETQKKLLKDLEDKYRV-----SRWQPPSFKEVAGSF---------NLDPSELEELLHYLVREG---VLVKINDEFYWH 197 (258)
T ss_dssp CCHHHHHHHHHHHHHHHH-----HTTSCCBHHHHHHHT---------TCCHHHHHHHHHHHHHTT---SEEESSSSBEEE
T ss_pred CCHHHHHHHHHHHHHHHH-----CCCCCCCHHHHHhHh---------CCCHHHHHHHHHHHHHCC---CEEEecCCeEEc
Confidence 466777777778777743 6654 356666443 267888777888887766 377776444442
Q ss_pred ecCcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHH
Q 027597 170 SVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDIL 215 (221)
Q Consensus 170 Svp~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l 215 (221)
|.-+..=-..+.+++ ..|.+|+.++++.+|-++-.|...||.|
T Consensus 198 --~~~~~~~~~~l~~~~-~~~~it~a~~Rd~lg~SRK~aIplLE~~ 240 (258)
T 1lva_A 198 --RQALGEAREVIKNLA-STGPFGLAEARDALGSSRKYVLPLLEYL 240 (258)
T ss_dssp --HHHHHHHHHHHHHHH-TTSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH-hcCCcCHHHHHHHhCCcHHHHHHHHHHH
Confidence 222332245567777 7899999999999999999999999987
No 11
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=91.26 E-value=0.51 Score=33.55 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 181 ~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+++.+..|.+|+++|++.|+-+..=++.-|+.|.+.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~ 43 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESM 43 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 48999999999999999999999999999999888764
No 12
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=90.50 E-value=2.4 Score=32.65 Aligned_cols=134 Identities=13% Similarity=0.332 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHH--HhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccC
Q 027597 37 EQLATFRSQLEDFAR--KHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHN 114 (221)
Q Consensus 37 ~ql~~F~~~L~~Fa~--kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~n 114 (221)
.|++.||+....|=. .+.+.|..+ .|+.++.++|++|-.. +|-++. ..-..+
T Consensus 6 eqi~elre~F~~fD~~~d~dG~I~~~-----El~~~lr~lG~~~t~~--------------------el~~~~-~~d~~~ 59 (159)
T 3i5g_C 6 DEIEEVREVFDLFDFWDGRDGDVDAA-----KVGDLLRCLGMNPTEA--------------------QVHQHG-GTKKMG 59 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEGG-----GHHHHHHHTTCCCCHH--------------------HHHTTT-CCSSTT
T ss_pred HHHHHHHHHHHHHCcCCCCCCeECHH-----HHHHHHHHcCCCCCHH--------------------HHHHHH-cccccC
Confidence 466777888888865 455678765 4668888999987421 011111 122334
Q ss_pred CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCC-EEEEEecCcccchhHH-HHHHHHH---h-
Q 027597 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGK-KKLVRSVPTELNKDHN-QILELAQ---A- 188 (221)
Q Consensus 115 GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~-~~~v~Svp~Els~D~~-~vlel~~---~- 188 (221)
.|-|+..|.+..+.+.... ...-++++|.+|.+.+-+=|+|+ |+... +.++++.-..++.++. .++..+. .
T Consensus 60 ~g~i~f~eFl~~~~~~~~~-~~~~~~~~l~~aF~~fD~d~~G~--I~~~el~~~l~~~g~~ls~~e~~~l~~~~D~~~d~ 136 (159)
T 3i5g_C 60 EKAYKLEEILPIYEEMSSK-DTGTAADEFMEAFKTFDREGQGL--ISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDI 136 (159)
T ss_dssp SCEECHHHHHHHHHHHTTC-CTTCCHHHHHHHHHHHCTTSSSE--ECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCS
T ss_pred CCcccHHHHHHHHHHhhcc-cccchHHHHHHHHHHHhcCCCCc--CcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCC
Confidence 4777888877766654432 13456777777777777767775 22211 1122233333444432 2333333 1
Q ss_pred cCCccHHHHHH
Q 027597 189 QGFVTVDEVER 199 (221)
Q Consensus 189 ~G~vt~~~L~~ 199 (221)
-|.|+.++...
T Consensus 137 dG~I~~~EF~~ 147 (159)
T 3i5g_C 137 DGNIKYEDLMK 147 (159)
T ss_dssp SCCEEHHHHHH
T ss_pred CCeEeHHHHHH
Confidence 36788777653
No 13
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=89.63 E-value=0.56 Score=31.89 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=33.4
Q ss_pred CcccchhHHHHHHHHHhc-CCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 172 PTELNKDHNQILELAQAQ-GFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~-G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
|..++.-...||++.... +.+|.++|++.+|+++.=+...|..|.+
T Consensus 5 ~~~m~~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp ----CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 555664455688887764 5899999999999998888777777754
No 14
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=89.20 E-value=0.6 Score=34.01 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 181 ~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.|+++++..|.+|+++|++.|+-+..=++.-|+.|.+
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~ 42 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEA 42 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999998888865
No 15
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=89.13 E-value=2.4 Score=31.67 Aligned_cols=93 Identities=19% Similarity=0.480 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCCC
Q 027597 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGG 116 (221)
Q Consensus 37 ~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGG 116 (221)
.|++.+++....|=..+.+.|..++ |..++.++|.+|... .+..+....-..+.|
T Consensus 7 eqi~el~~~F~~~D~d~~G~I~~~E-----l~~~l~~~~~~~~~~--------------------~~~~~~~~~d~~~~g 61 (148)
T 2lmt_A 7 EQIAEFKDAFVQFDKEGTGKIATRE-----LGTLMRTLGQNPTEA--------------------ELQDLIAEAENNNNG 61 (148)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEGGG-----HHHHHHHHTCCCCHH--------------------HHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHcCCCCCeECHHH-----HHHHHHhcCCCchHH--------------------HHHHHHHhcccCCCC
Confidence 3567778888888889999998764 668888899887531 111222222233446
Q ss_pred cccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 027597 117 LINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (221)
Q Consensus 117 li~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~ 157 (221)
.++..|....+..... ...+++++.+|.+.+-.=|+|+
T Consensus 62 ~i~~~ef~~~~~~~~~---~~~~~~~l~~aF~~~D~d~~G~ 99 (148)
T 2lmt_A 62 QLNFTEFCGIMAKQMR---ETDTEEEMREAFKIFDRDGDGF 99 (148)
T ss_dssp EEEHHHHHHHHHHTTT---TTTTHHHHHHHHHHHHSSCSSE
T ss_pred cccHHHHHHHHHHHhc---ccCcHHHHHHHHHHHCCCCcCc
Confidence 6777776665554322 2345666666666665555554
No 16
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=88.65 E-value=0.74 Score=32.31 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=37.5
Q ss_pred ccchhH-HHHHHHHHhcC---CccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDH-NQILELAQAQG---FVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~-~~vlel~~~~G---~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.++.|. ..||++....| .+|+.+|++.+|-++.-+...|..|.++
T Consensus 10 ~~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 10 SIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344454 67899998888 9999999999999999889988888654
No 17
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=87.90 E-value=0.5 Score=35.16 Aligned_cols=108 Identities=14% Similarity=0.214 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCC-CCcc---ccccCccchHHHHHH---------HHH
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFW---AELLGIGDFYYELGV---------QIV 104 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~-k~~w---s~~lG~gdfy~eLav---------qIv 104 (221)
++..++.....|-..+.+.|..+ .|+.++.++|.+|-... ..++ +..+...+|..-+.. .+.
T Consensus 14 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 88 (153)
T 2ovk_B 14 QMQELKEAFTMIDQDRDGFIGME-----DLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPEDALR 88 (153)
T ss_dssp HHHHHHHHHHHHCCSTTTCCCHH-----HHHHHTTTTTSCCCHHHHHHHHHHSSSCCCSHHHHHTTTTTTTTCCCTTHHH
T ss_pred HHHHHHHHHHHhCCCCCCeECHH-----HHHHHHHHhCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Confidence 44555555566666666666644 56677778887653210 0000 111222333322221 222
Q ss_pred HHhhhhcccC-CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 105 EICLATRPHN-GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 105 evC~~tr~~n-GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
++. ..-+.+ -|.|+..|+...+... | ..+|++++...++.+.+ |.|
T Consensus 89 ~~F-~~~D~d~~G~I~~~el~~~l~~~-g---~~~~~~~~~~~~~~~d~-~dg 135 (153)
T 2ovk_B 89 NAF-SMFDEDGQGFIPEDYLKDLLENM-G---DNFSKEEIKNVWKDAPL-KNK 135 (153)
T ss_dssp HHH-HTTCSSCSSCCCHHHHHHHHHHS-S---SCCCHHHHHHHHHHCCE-ETT
T ss_pred HHH-HHHCCCCCCeEcHHHHHHHHHHc-C---CCCCHHHHHHHHHHcCC-CCC
Confidence 222 333333 4788888888777653 2 35788888887777777 666
No 18
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=86.59 E-value=0.48 Score=32.21 Aligned_cols=37 Identities=19% Similarity=0.462 Sum_probs=29.5
Q ss_pred hhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccC
Q 027597 109 ATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG 154 (221)
Q Consensus 109 ~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG 154 (221)
+....|||++.++++-..+. |+.++|..+++.|+.=|
T Consensus 17 ~yIr~sGGildI~~~a~kyg---------V~kdeV~~~LrrLe~KG 53 (59)
T 2xvc_A 17 DYIVNNGGFLDIEHFSKVYG---------VEKQEVVKLLEALKNKG 53 (59)
T ss_dssp HHHHHTTSEEEHHHHHHHHC---------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCEEeHHHHHHHhC---------CCHHHHHHHHHHHHHCC
Confidence 34457899999988775533 99999999999998755
No 19
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=86.08 E-value=3.2 Score=29.98 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCCCc
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGL 117 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGl 117 (221)
++..++.....|-..+.+.|..+ .|..++.++|..|-.. - ...++..+ ...+.|||.
T Consensus 6 ~~~~l~~~F~~~D~~~~G~i~~~-----el~~~l~~~~~~~~~~-------------~----~~~l~~~~-~~~d~~~g~ 62 (149)
T 2mys_C 6 AADDFKEAFLLFDRTGDAKITAS-----QVGDIARALGQNPTNA-------------E----INKILGNP-SKEEMNAAA 62 (149)
T ss_pred HHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHhCCCCCHH-------------H----HHHHHHHh-hhccccCCc
Confidence 45556666677777777777643 5677888888765311 0 11122222 122445588
Q ss_pred ccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 027597 118 INLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (221)
Q Consensus 118 i~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~ 157 (221)
|+..|.+..+...... ...-+.+.+..+.+.+-+=|+|+
T Consensus 63 i~~~eF~~~~~~~~~~-~~~~~~~~~~~~F~~~D~d~~G~ 101 (149)
T 2mys_C 63 ITFEEFLPMLQAAANN-KDQGTFEDFVEGLRVFDKEGNGT 101 (149)
T ss_pred CcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhCCCCCce
Confidence 8888888777664211 12234555666666655555553
No 20
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=85.70 E-value=1.6 Score=32.03 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=39.4
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.++..+..+|......|.+|+.+|++.+++++.-+..+|+.|.+.
T Consensus 26 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~ 70 (138)
T 3bpv_A 26 NLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEES 70 (138)
T ss_dssp TCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 467778889988888899999999999999999999999998763
No 21
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=85.53 E-value=2 Score=29.65 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 180 NQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 180 ~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
..||++....|.+|+.+|++.+|.++.-+...|+.|.++
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457888877789999999999999999999999998764
No 22
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=85.40 E-value=1.5 Score=32.51 Aligned_cols=45 Identities=24% Similarity=0.382 Sum_probs=40.4
Q ss_pred CcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
|..++.-+..||......| +|+.+|++.+|+++.-+...|+.|.+
T Consensus 33 ~~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 33 EVALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp SSCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567888999999998888 99999999999999999999998875
No 23
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=84.77 E-value=3.3 Score=30.41 Aligned_cols=36 Identities=6% Similarity=0.063 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 39 LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 39 l~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
+..++.....|-..+.+.|..+ .|..++..+|+.|.
T Consensus 22 ~~~l~~~F~~~D~~~~G~i~~~-----e~~~~l~~~~~~~~ 57 (161)
T 3fwb_A 22 KQEIYEAFSLFDMNNDGFLDYH-----ELKVAMKALGFELP 57 (161)
T ss_dssp HHHHHHHHHHHCTTSSSEECHH-----HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHcCCCCC
Confidence 3444555555666666666654 46677777787653
No 24
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=84.67 E-value=1.9 Score=32.14 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=39.9
Q ss_pred CcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
|..|+..|-.||......|.+|+.+|++.+++++.-+...|+.|.+
T Consensus 26 ~~~lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 26 QQDLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp TTTCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4456777888998887778899999999999999999999998875
No 25
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=84.12 E-value=2 Score=32.01 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=41.6
Q ss_pred CcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
|..|+..|..+|......|.+|..+|++.+++++.-+...|+.|.+.
T Consensus 35 ~~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 35 KFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp GGTCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 44688889899999888899999999999999999999999988763
No 26
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=83.83 E-value=11 Score=27.62 Aligned_cols=38 Identities=13% Similarity=0.428 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHH--HhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 37 EQLATFRSQLEDFAR--KHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 37 ~ql~~F~~~L~~Fa~--kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
.++..++.....|-. .+.+.|..+ .|..++.++|..|-
T Consensus 6 ~~~~~l~~~F~~~D~~~d~~G~i~~~-----el~~~l~~~g~~~~ 45 (156)
T 1wdc_C 6 DEIDDLKDVFELFDFWDGRDGAVDAF-----KLGDVCRCLGINPR 45 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCEEGG-----GHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHccCCCCCCCCcHH-----HHHHHHHHcCCCCC
Confidence 345566777778888 788888766 46678888888764
No 27
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=83.77 E-value=2 Score=31.77 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=38.3
Q ss_pred ccchhHHHHHHHH-HhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELA-QAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~-~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..+..||... ...|.+|+.+|++.+|+++.-+..+|+.|.+.
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~ 79 (146)
T 2fbh_A 34 GLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQ 79 (146)
T ss_dssp CCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 3566677788888 66789999999999999999999999998763
No 28
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=83.44 E-value=4.2 Score=29.67 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHh-hcccccChhHHHHHHHHHHHcCCCCC
Q 027597 37 EQLATFRSQLEDFARKH-KNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 37 ~ql~~F~~~L~~Fa~kh-~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
.++..++.....|-..+ .+.|..+ .|..++.++|.+|-
T Consensus 11 ~~~~~l~~~F~~~D~d~~~G~i~~~-----el~~~l~~~g~~~~ 49 (146)
T 2qac_A 11 EEKVDESDVRIYFNEKSSGGKISID-----NASYNARKLGLAPS 49 (146)
T ss_dssp HHHSCHHHHHHHHHHHCBTTBEEHH-----HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCccCCCCcccHH-----HHHHHHHHhCCCCC
Confidence 34555666677777777 7777654 56778888888764
No 29
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=83.35 E-value=3.1 Score=30.09 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 37 ~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
.|+..++.....|-..+.+.|..+ .|..++.++|.+|-
T Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~ 41 (143)
T 3j04_B 4 SQIQEFKEAFNMIDQNRDGFIDKE-----DLHDMLASMGKNPT 41 (143)
T ss_dssp HHHHHHHHHHTTTCSSCTTCCCHH-----HHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHhCCCCCCCcCHH-----HHHHHHHHhCCCCC
Confidence 345556666666666666777654 57788888998764
No 30
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=83.17 E-value=2.2 Score=29.78 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=37.2
Q ss_pred cchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 175 ls~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
++.-+..||.+....|.+|+.+|++.+|+++.-+...|+.|.+
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556777888887778899999999999999999999998875
No 31
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=82.66 E-value=2.5 Score=30.95 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=38.6
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..+..+|......|.+|..+|++.+++++.-+...|+.|.+.
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 31 DITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp TSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHC
Confidence 456778888888877788999999999999999999999988763
No 32
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=82.21 E-value=2.8 Score=30.65 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=39.2
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.++..+..||......|.+|..+|++.+|+++.-+...|+.|.+.
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 567778888888877789999999999999999999999998763
No 33
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=82.18 E-value=2.8 Score=29.52 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=39.5
Q ss_pred cccchhHHHHHHHHHhcCCccHHHH----HHhcCCCHHHHHHHHHHHHH
Q 027597 173 TELNKDHNQILELAQAQGFVTVDEV----ERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 173 ~Els~D~~~vlel~~~~G~vt~~~L----~~~l~W~~~Ra~~~L~~l~~ 217 (221)
..|+..|..||......|.+|..+| ++.+++++.-+...|+.|.+
T Consensus 4 ~~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 4 TPFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp CSSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4577788889988887899999999 89999999999999998876
No 34
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=82.09 E-value=7.2 Score=28.58 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 37 ~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
.|...++.....|-..+.+.|..+ .|..++.++|.+|-
T Consensus 3 ~~~~~l~~~F~~~D~d~~G~I~~~-----el~~~l~~~g~~~~ 40 (143)
T 2obh_A 3 EQKQEIREAFDLFDADGTGTIDVK-----ELKVAMRALGFEPK 40 (143)
T ss_dssp HHHHHHHHHHHTTCTTCCSEEEGG-----GHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHcCCCCC
Confidence 355666777777777777778766 46677778887763
No 35
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=82.06 E-value=2.9 Score=30.87 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=37.9
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.++..+..||.... .|.+|+.+|++.+|+++.-+..+|+.|.+.
T Consensus 34 ~l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 34 NLSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TCCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHC
Confidence 45666777888887 899999999999999999999999988763
No 36
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=81.95 E-value=2.5 Score=31.03 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=39.0
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..+..+|......|.+|..+|++.+++++.-+...|+.|.+.
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~ 72 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 456678888888877788999999999999999999999998763
No 37
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=81.93 E-value=13 Score=27.29 Aligned_cols=38 Identities=13% Similarity=0.389 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHH--HHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 37 EQLATFRSQLEDFA--RKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 37 ~ql~~F~~~L~~Fa--~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
.++..++.....|= ..+.+.|..+ .|..++.++|..|-
T Consensus 6 ~~~~~l~~~F~~~D~~~d~~G~i~~~-----el~~~l~~lg~~~~ 45 (159)
T 2ovk_C 6 DEIEEVREVFDLFDFWDGRDGDVDAA-----KVGDLLRCLGMNPT 45 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSEEEGG-----GHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCcHH-----HHHHHHHHcCCCCC
Confidence 34556666777776 7788888876 46677888898763
No 38
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=81.90 E-value=2.5 Score=33.62 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=39.7
Q ss_pred ecCcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 170 SVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 170 Svp~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
|.|.+|+.-+..+|.+.+..|.+|..+|++.+|.++.-+..-|+.|.+
T Consensus 10 ~~~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 10 SSEIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQE 57 (171)
T ss_dssp ----CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456677777778999999889999999999999999999999988865
No 39
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=81.87 E-value=2.7 Score=32.14 Aligned_cols=105 Identities=15% Similarity=0.255 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCC-CCccccc---cCccchHHHHHH--------HHH
Q 027597 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFWAEL---LGIGDFYYELGV--------QIV 104 (221)
Q Consensus 37 ~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~-k~~ws~~---lG~gdfy~eLav--------qIv 104 (221)
.|++.|++....|=..+.+.|..+ .|...+.++|.+|.... ..+.... +...+|...++. +-+
T Consensus 13 ~qi~elk~~F~~~D~d~dG~I~~~-----El~~~l~~lg~~~~~~~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~~~~~l 87 (153)
T 3i5g_B 13 RQMQELKEAFTMIDQDRDGFIGME-----DLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPEDAL 87 (153)
T ss_dssp HHHHHHHHHHHHHCCSTTSCCCHH-----HHHHHHHHTTSCCCHHHHHHHHHTSSSCCCSHHHHHTTTTTTTTCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCeEcHH-----HHHHHHHHcCCCccHHHHHHHHHhccCCccHHHHHHHHHhhhcccccHHHH
Confidence 456677888888888888888765 47788888999876311 0011111 112233322211 112
Q ss_pred HHhhhhcccCC-CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhc
Q 027597 105 EICLATRPHNG-GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKL 150 (221)
Q Consensus 105 evC~~tr~~nG-Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L 150 (221)
.-+-..-+.+| |.|+..||...+... | ..+|+++|..-++..
T Consensus 88 ~~aF~~fD~d~~G~I~~~el~~~l~~~-g---~~ls~~ei~~~~~~~ 130 (153)
T 3i5g_B 88 RNAFSMFDEDGQGFIPEDYLKDLLENM-G---DNFSKEEIKNVWKDA 130 (153)
T ss_dssp HHHHHTTCSSCSSCCCHHHHHHHHHSS-S---SCCCHHHHHHHHTTC
T ss_pred HHHHhccccCCCCeEeHHHHHHHHHHc-C---CcCCHHHHHHHHHHh
Confidence 22233334444 777777777666542 2 457777776666554
No 40
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=81.66 E-value=2.7 Score=30.89 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=38.7
Q ss_pred cccchhHHHHHHHHHhcC--CccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 173 TELNKDHNQILELAQAQG--FVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 173 ~Els~D~~~vlel~~~~G--~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
..++..|..||......| .+|+.+|++.+++++.-+...|+.|.+
T Consensus 27 ~~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 27 FDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp GTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 356777888888887765 899999999999999999999998876
No 41
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=81.63 E-value=2.5 Score=31.31 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=39.2
Q ss_pred cccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 173 TELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 173 ~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
..++..|..||......|.+|..+|++.++.++.-+...|+.|.+
T Consensus 33 ~~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 356777888988887779999999999999999999999998875
No 42
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=81.51 E-value=3 Score=31.03 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=39.0
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..+..||......|.+|..+|++.+++++.-+...|+.|.+.
T Consensus 39 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 83 (150)
T 2rdp_A 39 PITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERN 83 (150)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 467778888888877789999999999999999999999988763
No 43
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=81.27 E-value=2.9 Score=31.37 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=38.7
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..+..||......|.+|+.+|++.+++++.-+...|+.|.+.
T Consensus 44 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 44 DLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 456677788888877888999999999999999999999988763
No 44
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=81.02 E-value=7.8 Score=28.36 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
++..++.....|-..+.+.|..+ .|..++.++|..|-
T Consensus 18 ~~~~l~~~F~~~D~d~~G~i~~~-----e~~~~l~~~~~~~~ 54 (162)
T 1top_A 18 MIAEFKAAFDMFDADGGGDISTK-----ELGTVMRMLGQNPT 54 (162)
T ss_dssp HHHHHHHHHHTTTCSCSSEEEGG-----GHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHCCCCCCcCCHH-----HHHHHHHHcCCCCC
Confidence 34455666666777777778755 46677778887653
No 45
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=80.80 E-value=2.7 Score=31.20 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=38.9
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.++..+..||......|.+|..+|++.+++++.-+..+|+.|.+.
T Consensus 37 ~l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 37 NITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp CCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 456677788888877789999999999999999999999998764
No 46
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=80.56 E-value=2.8 Score=31.54 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=39.3
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..|-.||......|.+|+.+|++.+++++.-+...|+.|.+.
T Consensus 38 ~lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~ 82 (149)
T 4hbl_A 38 GITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQS 82 (149)
T ss_dssp TCCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 456778889988888899999999999999999999999988763
No 47
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=80.32 E-value=1.7 Score=41.60 Aligned_cols=93 Identities=12% Similarity=0.143 Sum_probs=29.9
Q ss_pred CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc--cC-CCeEEEEeCCEEEEEec-Ccc----------------c
Q 027597 116 GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV--LG-NGYEVISVGKKKLVRSV-PTE----------------L 175 (221)
Q Consensus 116 Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~--LG-~g~~vi~i~~~~~v~Sv-p~E----------------l 175 (221)
+-|+.+++...++ +|+.++.++++.|.. ++ .|+ |...|+..+|..- -.. +
T Consensus 443 ~~it~~~la~~l~---------~s~~~~~~~L~~L~~~~~~~~gl-ie~~g~~y~L~~~~~~~~~~~~~~~~~~~~~~~~ 512 (583)
T 3lmm_A 443 PFITIDVVARGLQ---------SGKEAARNALEAARQTTVAGAPL-IIAHDGVWLLGNACREILRKVEPSPFSPVRYLST 512 (583)
T ss_dssp SSBCHHHHHHHHT---------SCHHHHHHHHHHHHTCEETTEES-EEEETTEEEECHHHHHHHTSCC------------
T ss_pred CCcCHHHHHHHhC---------cCHHHHHHHHHHHHhhhccccce-EEEeCCEEEECHHHHHHhcccccccccccccccC
Confidence 3467777776665 799999999999975 33 444 4445655444310 000 1
Q ss_pred chh--HHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 176 NKD--HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 176 s~D--~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
+.+ ...|++++...|.+|..++++.+|-+...|..+|..|+++
T Consensus 513 ~~~~~~~~I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~ 557 (583)
T 3lmm_A 513 DQAELTNAAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDE 557 (583)
T ss_dssp ---------------------------------------------
T ss_pred ChhHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 111 2357888888999999999999999999999999999875
No 48
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=80.31 E-value=3.2 Score=30.61 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=38.9
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..+..+|......|.+|+.+|++.+++++.-+..+|+.|.+.
T Consensus 26 ~lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp TCTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 466678888888888889999999999999999999999988763
No 49
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=80.18 E-value=3.3 Score=30.64 Aligned_cols=47 Identities=17% Similarity=0.039 Sum_probs=40.7
Q ss_pred CcccchhHHHHHHHHHh-cCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 172 PTELNKDHNQILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 172 p~Els~D~~~vlel~~~-~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
+..++..+..||..... .|.+|..+|++.+|+++.-+..+|+.|.+.
T Consensus 30 ~~~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~ 77 (147)
T 2hr3_A 30 ADPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERG 77 (147)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 34577788889888887 899999999999999999999999988763
No 50
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=80.12 E-value=3.8 Score=29.98 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=37.9
Q ss_pred ccchhHHHHHHHHHhcC--CccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQG--FVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G--~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.++..+..||......| .+|+.+|++.+++++.-+..+|+.|.+.
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 45666778888877766 7999999999999999999999988763
No 51
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=80.05 E-value=3.2 Score=29.46 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcC---CccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQG---FVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 179 ~~~vlel~~~~G---~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
+..||++....| .+|+.+|++.+|-++-=++..|..|-++
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456889888888 9999999999999998888888887653
No 52
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=79.99 E-value=14 Score=26.44 Aligned_cols=37 Identities=14% Similarity=0.336 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
++..++.....|-..+.+.|..+ .|..++.++|..|.
T Consensus 9 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~~~~~~ 45 (153)
T 3ox6_A 9 EIEELREAFREFDKDKDGYINCR-----DLGNCMRTMGYMPT 45 (153)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCHH-----HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHcCCCCC
Confidence 34555666666777777777754 56777888887653
No 53
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=79.97 E-value=2.3 Score=31.36 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=39.0
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..+..||......|.+|..+|++.+++++.-+..+|+.|.+.
T Consensus 30 ~l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~ 74 (145)
T 2a61_A 30 GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp TCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 466678888888877789999999999999999999999988763
No 54
>2i3o_A Gamma-glutamyltransferase related protein; structural genomics, PSI, protein structure initiative; 2.03A {Thermoplasma acidophilum} SCOP: d.153.1.6
Probab=79.89 E-value=2.4 Score=40.01 Aligned_cols=72 Identities=19% Similarity=0.151 Sum_probs=44.2
Q ss_pred HHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCcc----ccc------cCccchHH-HHHHHHHHHhhhhcccC
Q 027597 46 LEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFW----AEL------LGIGDFYY-ELGVQIVEICLATRPHN 114 (221)
Q Consensus 46 L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~w----s~~------lG~gdfy~-eLavqIvevC~~tr~~n 114 (221)
|..........++++|.++.-|. .=| .|+....-+- +++ -|...||. ++|.+|++.+. .+
T Consensus 149 la~~~~~~~~~l~~~~~~~~~f~----~~G-~~~~~G~~~~~p~LA~TL~~IA~~G~~~FY~G~iA~~iv~~~~----~~ 219 (516)
T 2i3o_A 149 YSDSIARSAPVIGQYRGWSSIFM----PNG-SVPVAGEILKQPDLAESFRLMSEEGFRSFYDGSLADIIIAGLE----GT 219 (516)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHS----TTS-SCCCTTCEECCHHHHHHHHHHHHHCTTHHHHSHHHHHHHHTTT----TT
T ss_pred HHHHHHHHHHHhhcChhHHhhhc----cCC-ccCCCCCEecCHHHHHHHHHHHhhCcccccCCHHHHHHHHHHH----Hc
Confidence 33334444455777888876662 223 3443321111 111 15568886 89999998886 57
Q ss_pred CCcccHHHHHHH
Q 027597 115 GGLINLQELCNL 126 (221)
Q Consensus 115 GGli~l~el~~~ 126 (221)
||+|+++||-..
T Consensus 220 GG~lt~~DLa~y 231 (516)
T 2i3o_A 220 GSPLSDRDLRVY 231 (516)
T ss_dssp CCCCCHHHHHHC
T ss_pred CCCCCHHHHhhC
Confidence 999999999765
No 55
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=79.85 E-value=2.8 Score=29.53 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=32.2
Q ss_pred HHHHHHHHHhc------CCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQ------GFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 179 ~~~vlel~~~~------G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
+..||+++... +.+|+.+|++.+|.|..=++.-|+.|-+
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45688888765 7899999999999998878888877754
No 56
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.67 E-value=2.4 Score=31.08 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=38.5
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..+..+|......|.+|..+|++.+++++.-+..+|+.|.+.
T Consensus 33 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~ 77 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERD 77 (142)
T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 456667788888877788999999999999999999999988763
No 57
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=79.52 E-value=0.66 Score=31.20 Aligned_cols=40 Identities=23% Similarity=0.425 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCC
Q 027597 34 LMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA 80 (221)
Q Consensus 34 ~l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~ 80 (221)
....||+.|++--..+. .+|.-+|--.++||-++.||...
T Consensus 19 kfkn~lqh~r~vaaaks-------~en~rlr~l~kqmcpsldvdsii 58 (63)
T 2c9l_Y 19 KFKQLLQHYREVAAAKS-------SENDRLRLLLKQMCPSLDVDSII 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTCCHHHHS
T ss_pred HHHHHHHHHHHHHHhhc-------ccchHHHHHHHHhCCcccccccC
Confidence 45566666666444333 35778999999999999999443
No 58
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=79.52 E-value=3.6 Score=31.05 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=37.8
Q ss_pred cchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 175 ls~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
|+..+..||......|.+|..+|++.+++++.-+..+|+.|.+.
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46667778888887889999999999999999999999988763
No 59
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=79.45 E-value=3 Score=28.54 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=38.7
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcC----CCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLS----WTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~----W~~~Ra~~~L~~l~~ 217 (221)
.|+.-+..||.+....|.+|+.+|.+.++ |+..-+...|+.|.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~ 53 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK 53 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 57778888999988889999999999986 999999999998875
No 60
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=79.26 E-value=2.9 Score=31.72 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=38.0
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.|+.-|-.||......|.+|+.+|++.+++++.-+...|+.|.+
T Consensus 47 ~lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 47 GIGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp TCCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45666777888887779999999999999999999999998875
No 61
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=79.09 E-value=2.9 Score=31.42 Aligned_cols=45 Identities=9% Similarity=0.049 Sum_probs=38.6
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..|..||.+....|.+|+.+|++.+|+++.-+..+|+.|.+.
T Consensus 40 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~ 84 (155)
T 3cdh_A 40 GLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp TCCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356667788888877789999999999999999999999988763
No 62
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=79.06 E-value=4.6 Score=30.88 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=39.1
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
+|+.-+..+|.+.+..|.+|..+|++.+|.+..-+..-|+.|.+.
T Consensus 4 ~ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 4 PLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 466667789999998899999999999999999999998888653
No 63
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=79.02 E-value=4.7 Score=30.69 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=38.3
Q ss_pred cchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 175 ls~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
|+.-+..+|.+.+..|.+|..+|++.+|.++.-+...|+.|.++
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 56656679999888899999999999999999999999888653
No 64
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=79.00 E-value=11 Score=28.20 Aligned_cols=36 Identities=17% Similarity=0.417 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 39 LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 39 l~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
+..++.....|-..+.+.|..+ .|..++.++|.+|-
T Consensus 10 ~~~l~~~F~~~D~d~~G~i~~~-----e~~~~l~~~~~~~~ 45 (179)
T 2f2o_A 10 IAEFKEAFSLFDKDGDGTITTK-----ELGTVMRSLGQNPT 45 (179)
T ss_dssp HHHHHHHHHHHCTTCSSCBCHH-----HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHcCCCCC
Confidence 4445556666666777777643 57777888887653
No 65
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=78.84 E-value=2.2 Score=30.39 Aligned_cols=47 Identities=6% Similarity=-0.002 Sum_probs=37.6
Q ss_pred CcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHH-HHHHHHHHHHHH
Q 027597 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSG-RAIDALDILLEV 218 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~-Ra~~~L~~l~~~ 218 (221)
|.++..-+.+||.+....|-.|+.+|++.+|.++. =++..|..|-++
T Consensus 6 ~~~~~~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~e 53 (79)
T 1xmk_A 6 SLDMAEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQ 53 (79)
T ss_dssp SHHHHHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHC
Confidence 33444456779999999999999999999999999 677777777553
No 66
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=78.79 E-value=15 Score=26.17 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDP 78 (221)
|+..++.....|-..+.+.|..+ .|..++.++|..|
T Consensus 4 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~~~~~ 39 (142)
T 2bl0_C 4 QVSEFKEAFELFDSERTGFITKE-----GLQTVLKQFGVRV 39 (142)
T ss_dssp HHHHHHHHHHHHCTTCSSEEEHH-----HHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHhCCCC
Confidence 44555666666666666667643 4666777777765
No 67
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=78.61 E-value=1.8 Score=31.43 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=21.9
Q ss_pred CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 116 GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 116 Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
|.|+..|+...+... | ..+|++++...++.+.+ |.|
T Consensus 91 G~i~~~el~~~l~~~-g---~~~~~~~~~~~~~~~d~-~dg 126 (140)
T 1ggw_A 91 GMIGVGELRYVLTSL-G---EKLSNEEMDELLKGVPV-KDG 126 (140)
T ss_dssp SCCCHHHHHHHHHHH-H---SCSCHHHHHHHHHHTTC-SSC
T ss_pred CcEeHHHHHHHHHHc-C---CCCCHHHHHHHHHhccC-CCC
Confidence 667777776666543 2 23666666666666665 555
No 68
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=78.45 E-value=2.2 Score=31.93 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=38.6
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..+..||......|.+|+.+|++.+++++.-+...|+.|.+.
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 78 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQK 78 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 456667788888877788999999999999999999999988763
No 69
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=78.36 E-value=4.7 Score=30.80 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=38.9
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
+|+.-+..+|.+.+..|.+|..+|++.+|.+..-+..-|+.|.++
T Consensus 5 ~ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 5 LIDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp CCCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 456556689999998899999999999999999999999888654
No 70
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=78.32 E-value=3.2 Score=30.92 Aligned_cols=45 Identities=13% Similarity=0.020 Sum_probs=38.7
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.++..+..||......|.+|+.+|++.+|+++.-+..+|+.|.+.
T Consensus 37 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~ 81 (152)
T 3bj6_A 37 GVTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356667788888888889999999999999999999999988763
No 71
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=78.31 E-value=2.4 Score=30.95 Aligned_cols=45 Identities=4% Similarity=0.138 Sum_probs=39.0
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.++..+..+|......|.+|+.+|++.+++++.-+...|+.|.+.
T Consensus 30 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 74 (139)
T 3bja_A 30 DISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRD 74 (139)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 467778889988888889999999999999999999999888763
No 72
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=78.01 E-value=3.4 Score=31.81 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=39.3
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..+..||......|.+|+.+|++.+|+++.-+...|+.|.+.
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 86 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 567778888888887789999999999999999999999988763
No 73
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=77.99 E-value=2.6 Score=31.39 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=38.8
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.|+..|..||......|.+|+.+|++.+++++.-+...|+.|.+
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 46677888888888789999999999999999999999998875
No 74
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=77.93 E-value=4.3 Score=30.86 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=37.3
Q ss_pred cchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 175 ls~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
|+.-+..+|++.+..|.+|..+|++.+|.++.-+..-|+.|.+
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLES 45 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4555667999888889999999999999999999999988865
No 75
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=77.76 E-value=7.7 Score=28.42 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHH-HHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 38 QLATFRSQLEDFA-RKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 38 ql~~F~~~L~~Fa-~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
++..++.....|- ..+.+.|..+ .|..++.++|+.|-
T Consensus 11 ~~~~l~~~F~~~D~~~~~G~i~~~-----e~~~~l~~~~~~~~ 48 (158)
T 2jnf_A 11 QVKLLETAFRDFETPEGSGRVSTD-----QIGIILEVLGIQQT 48 (158)
T ss_dssp HHHHHHHHHHHSBCSSSCSSEEHH-----HHHHHHHHTTCSCS
T ss_pred HHHHHHHHHHHhCCCCCCCcCcHH-----HHHHHHHHhCCCCC
Confidence 3444555555666 6666666643 57777888887653
No 76
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=77.64 E-value=4 Score=30.88 Aligned_cols=45 Identities=16% Similarity=0.049 Sum_probs=38.9
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..+..||......|.+|..+|++.+|+++.-+..+|+.|.+.
T Consensus 49 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 93 (162)
T 3cjn_A 49 GLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 356667888888888889999999999999999999999998763
No 77
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=77.54 E-value=19 Score=26.52 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
++..++.....|-..+.+.|..+ .|..++.++|+.|.
T Consensus 26 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~~~~~~ 62 (169)
T 3qrx_A 26 QKQEIREAFDLFDTDGSGTIDAK-----ELKVAMRALGFEPK 62 (169)
T ss_dssp HHHHHHHHHHHHCTTCCSEECHH-----HHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHcCCCCC
Confidence 34555666666666677777654 56677778887653
No 78
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=77.53 E-value=4.3 Score=30.30 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=36.3
Q ss_pred ccchhHHHHHHHHHhcCC--ccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGF--VTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~--vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.|+.-+..||.+....+. +|+.+|++.+++++.-+...|+.|.+
T Consensus 23 gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp TCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456667778877766443 99999999999999999999998875
No 79
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=77.47 E-value=4.6 Score=31.22 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=38.7
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
+|+.-+..+|.+.+..|.+|..+|++.+|.+..-+..-|+.|.+
T Consensus 7 ~ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 7 TLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLED 50 (162)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46666778999999889999999999999999999998888865
No 80
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=77.42 E-value=2.7 Score=31.23 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=36.1
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.|+.-|..||......|.+|+.+|++.+|+++.-+...|+.|.+
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46777888999888888999999999999999999999988875
No 81
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=77.42 E-value=3.4 Score=31.46 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=38.8
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.|+.-|..||......|.+|+.+|++.+++++.-+...|+.|.+
T Consensus 43 glt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 43 EISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp TCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667888998888888999999999999999999999998875
No 82
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=77.10 E-value=19 Score=26.21 Aligned_cols=37 Identities=19% Similarity=0.428 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
++..++..+..|-..+.+.|..+ .|..++.++|.+|-
T Consensus 8 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~ 44 (148)
T 1exr_A 8 QIAEFKEAFALFDKDGDGTITTK-----ELGTVMRSLGQNPT 44 (148)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHH-----HHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHcCCCCC
Confidence 34555666666777777777643 56677788887763
No 83
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=76.92 E-value=5.3 Score=28.83 Aligned_cols=47 Identities=9% Similarity=0.047 Sum_probs=40.9
Q ss_pred cCcccchhHHHHHHHHHhcC--CccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 171 VPTELNKDHNQILELAQAQG--FVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 171 vp~Els~D~~~vlel~~~~G--~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
-+..|+.+|..||.+....| .+|..+|++.++-+..-...+|+.|.+
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35578999999999999855 899999999999999999999888754
No 84
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=76.67 E-value=5.3 Score=29.84 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=37.3
Q ss_pred cchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 175 ls~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
|+.-+..+|...+..|.+|..+|++.+|.++.-+...|+.|.++
T Consensus 2 ld~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp CCSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34446678888888899999999999999999999999988754
No 85
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=76.01 E-value=19 Score=26.30 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
++..++.....|-..+.+.|..+ .|..++.++|..|-
T Consensus 16 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~ 52 (156)
T 1wdc_B 16 QIQEMKEAFSMIDVDRDGFVSKE-----DIKAISEQLGRAPD 52 (156)
T ss_dssp HHHHHHHHHHHHCTTCSSSCCHH-----HHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHhCCCCC
Confidence 45556666667777777777643 67788888887754
No 86
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=75.81 E-value=3.9 Score=30.60 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=37.3
Q ss_pred cchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 175 ls~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
|+.-|..||......|.+|+.+|++.+++++.-+...|+.|.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666777888887778899999999999999999999988875
No 87
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=75.64 E-value=3.8 Score=29.78 Aligned_cols=45 Identities=7% Similarity=0.296 Sum_probs=39.4
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcC----CCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLS----WTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~----W~~~Ra~~~L~~l~~~ 218 (221)
.|+..+..||.+....|.+|+.+|++.++ |++.-+...|+.|.+.
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~ 55 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKK 55 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHC
Confidence 57778888998887778999999999998 9999999999998763
No 88
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=74.95 E-value=23 Score=26.14 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCC-CCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGV-DPL 79 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGV-DPL 79 (221)
++..++.....|-..+.+.|..+ .|..++.++|. +|-
T Consensus 23 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~~ 60 (166)
T 2mys_B 23 EIEDFKEAFTVIDQNADGIIDKD-----DLRETFAAMGRLNVK 60 (166)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHH-----HHHHHHHHhCCCCCC
Confidence 34555666666766676767643 57788888887 653
No 89
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=74.74 E-value=5.7 Score=30.65 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=37.4
Q ss_pred ccchhHHHHHHHHHh-cCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~-~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.|+..|..||..... .+.+|+.+|++.+++++.-+..+|+.|.+
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 456667778887776 67899999999999999999999998875
No 90
>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP, post-translational PROC maturation, transferase; 2.55A {Escherichia coli K12} SCOP: d.153.1.6
Probab=74.64 E-value=4.3 Score=38.71 Aligned_cols=74 Identities=26% Similarity=0.357 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCcc----ccc------cCccchHH-HHHHHHHHHhhhhccc
Q 027597 45 QLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFW----AEL------LGIGDFYY-ELGVQIVEICLATRPH 113 (221)
Q Consensus 45 ~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~w----s~~------lG~gdfy~-eLavqIvevC~~tr~~ 113 (221)
.|..........++++|.++.-|. ..=| .|+....-+- +++ -|...||. ++|.+|++-.. .
T Consensus 162 ~la~~~~~~~~~l~~~p~~~~~f~---~~~G-~~~~~G~~~~~p~LA~TL~~IA~~G~~~FY~G~iA~~iv~~~~----~ 233 (556)
T 2e0w_A 162 ALADDLKTYGSEVLPNHENSKAIF---WKEG-EPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQ----K 233 (556)
T ss_dssp HHHHHHHHTHHHHSTTSHHHHHHH---EETT-EECCTTCEECCHHHHHHHHHHHHHCTHHHHHSHHHHHHHHHHH----H
T ss_pred HHHHHHHHhHHHhhcCchHHHhcc---CCCC-ccCCCCCEeeCHHHHHHHHHHHhhCcccccCCHHHHHHHHHHH----H
Confidence 344444555566778888877662 1112 2443221110 111 15567886 89999999887 4
Q ss_pred CCCcccHHHHHHH
Q 027597 114 NGGLINLQELCNL 126 (221)
Q Consensus 114 nGGli~l~el~~~ 126 (221)
+||+|+++||-..
T Consensus 234 ~GG~lt~~DLa~y 246 (556)
T 2e0w_A 234 NGGLITKEDLAAY 246 (556)
T ss_dssp SSCCCCHHHHHTC
T ss_pred cCCCcCHHHHhhC
Confidence 6999999999754
No 91
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=74.02 E-value=9.8 Score=29.55 Aligned_cols=37 Identities=19% Similarity=0.472 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
|++.|++....|=..+.+.|..+ .|...+.++|.+|-
T Consensus 9 qi~elk~~F~~~D~d~dG~I~~~-----El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 9 QIAEFKEAFALFDKDNNGSISSS-----ELATVMRSLGLSPS 45 (176)
T ss_dssp GGGHHHHHHHTTCSSCSSCBCHH-----HHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHCCCCCCCCCHH-----HHHHHHHHcCCChh
Confidence 45566777777777777777664 46677888888875
No 92
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=73.69 E-value=6.3 Score=29.96 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=37.3
Q ss_pred cchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 175 ls~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
|+.-+..+|.+.+..|.+|..+|++.+|.++.-+...|+.|.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5555667899888889999999999999999999998888865
No 93
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=73.37 E-value=6.9 Score=29.38 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=38.9
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..|..||......|.+|+.+|++.+++++.-+..+|+.|.+.
T Consensus 41 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 41 DMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp HSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 467778888888877788999999999999999999999988763
No 94
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=73.13 E-value=5 Score=29.65 Aligned_cols=46 Identities=11% Similarity=0.207 Sum_probs=38.5
Q ss_pred CcccchhHHHHHHHHHhc--CCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 172 PTELNKDHNQILELAQAQ--GFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~--G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
|..|+..|..||...... |.+|+.+|++.++.++.-+-..|+.|.+
T Consensus 32 ~~~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 32 EFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp TTCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345677788888887776 8899999999999999988888888865
No 95
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=72.93 E-value=7.3 Score=30.41 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCC-CCcc---ccccCccchHHHHHH--------HHHHH
Q 027597 39 LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFW---AELLGIGDFYYELGV--------QIVEI 106 (221)
Q Consensus 39 l~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~-k~~w---s~~lG~gdfy~eLav--------qIvev 106 (221)
+..++..+..|-..+.+.|..+ .|..++.++|++|-... ..++ ...+...+|..-+.. .-+.-
T Consensus 56 ~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~lg~~~~~~~~~~l~~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~ 130 (196)
T 3dtp_E 56 VQEFKEAFQLIDQDKDGFISKN-----DIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLTIFGDRIAGTDEEDVIVN 130 (196)
T ss_dssp HHHHHHHHHHHCCSCSSBCCHH-----HHHHHHHTTSCCCCHHHHHHHHTTSSSCCBHHHHHHHHHHCCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHH-----HHHHHHHHhCCCCCHHHHHHHHHHccCCCcHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3445555566666666667654 57788888887754210 0011 111222344433321 12222
Q ss_pred hhhhcccCC-CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc
Q 027597 107 CLATRPHNG-GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK 151 (221)
Q Consensus 107 C~~tr~~nG-Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~ 151 (221)
+....+.|| |.|+..|+...+ .. | ..+|++++...++.+-
T Consensus 131 ~F~~~D~d~~G~Is~~El~~~l-~~-g---~~~~~~~~~~l~~~~D 171 (196)
T 3dtp_E 131 AFNLFDEGDGKCKEETLKRSLT-TW-G---EKFSQDEVDQALSEAP 171 (196)
T ss_dssp HHHTTCSSSSCCBHHHHHHHHH-HS-S---SCCCHHHHHHHHHSSC
T ss_pred HHHHHCCCCCCcCcHHHHHHHH-Hc-C---CCCCHHHHHHHHHHcC
Confidence 233333333 666666666666 32 2 3466666665555543
No 96
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=72.91 E-value=4 Score=31.03 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=38.0
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.|+.-|..||......|.+|+.+|++.+++++.-+...|+.|.+
T Consensus 50 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35666778888887778999999999999999999999998875
No 97
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=72.79 E-value=11 Score=27.49 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 39 LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 39 l~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
...++.....|=..+.+.|..+ +|+..++.++.++|.+|-
T Consensus 3 ~~~l~~~F~~~D~d~dG~i~~~-E~~~~l~~~~~~~g~~~~ 42 (166)
T 3akb_A 3 ERRIAARFTTFDQDGNGHIDRS-DFSGAAKAMLAEFGVAAR 42 (166)
T ss_dssp HHHHHHHHHHHCTTCSSEECHH-HHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHhHHcCCCCCCcCHH-HHHHHHHHHHHHcCCCCC
Confidence 3445555556656666666543 455555556777787654
No 98
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A 2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Probab=72.54 E-value=4.4 Score=36.63 Aligned_cols=74 Identities=26% Similarity=0.353 Sum_probs=45.4
Q ss_pred HHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCcc----ccc------cCccchHH-HHHHHHHHHhhhhccc
Q 027597 45 QLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFW----AEL------LGIGDFYY-ELGVQIVEICLATRPH 113 (221)
Q Consensus 45 ~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~w----s~~------lG~gdfy~-eLavqIvevC~~tr~~ 113 (221)
.+..........+.++|.++..|. ..=| .|+....-+- +++ -|...||. ++|.+|++...+
T Consensus 162 ~la~~~~~~~~~l~~~~~~~~~f~---~~~G-~~~~~G~~~~~p~LA~TL~~IA~~G~~~FY~G~iA~~iv~~~~~---- 233 (366)
T 2dg5_A 162 ALADDLKTYGSEVLPNHENSKAIF---WKEG-EPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQK---- 233 (366)
T ss_dssp HHHHHHHHTGGGTGGGSHHHHHHH---EETT-EECCTTCEECCHHHHHHHHHHHHHCTHHHHTSHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhcCchHHHHhc---CCCC-eECCCCCEeeCHHHHHHHHHHHHhCchhccCCHHHHHHHHHHHH----
Confidence 444455555666777787766552 1112 2433221110 011 15567886 899999998874
Q ss_pred CCCcccHHHHHHH
Q 027597 114 NGGLINLQELCNL 126 (221)
Q Consensus 114 nGGli~l~el~~~ 126 (221)
+||+|+++||-..
T Consensus 234 ~GG~lt~~DLa~y 246 (366)
T 2dg5_A 234 NGGLITKEDLAAY 246 (366)
T ss_dssp TTCCCCHHHHHHC
T ss_pred cCCCCCHHHHhhC
Confidence 8999999999865
No 99
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=72.34 E-value=10 Score=35.27 Aligned_cols=92 Identities=21% Similarity=0.415 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccC-C
Q 027597 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHN-G 115 (221)
Q Consensus 37 ~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~n-G 115 (221)
.|++.|++....|=.++.+.|..+ +|+.++.++|++|-... |-++. ...+.| -
T Consensus 299 EEI~ELREaF~~fDkDgdG~IS~e-----ELk~aLrsLG~~~TeeE--------------------I~~Lf-~~~D~DgD 352 (440)
T 3u0k_A 299 EQIAEFKEAFSLFDKDGDGTITTK-----ELGTVMRSLGQNPTEAE--------------------LQDMI-NEVDADGD 352 (440)
T ss_dssp HHHHHHHHHHHHHCTTCSSEECHH-----HHHHHHHHTTCCCCHHH--------------------HHHHH-HHHCSSCS
T ss_pred HHHHHHHHHHHHHcCCCCCEECHH-----HHHHHHHHcCCCCCHHH--------------------HHHHH-HHhCCCCC
Confidence 577888888888988888888765 56788888998763210 11111 111333 3
Q ss_pred CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 027597 116 GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (221)
Q Consensus 116 Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~ 157 (221)
|.|++.|.+..+.+... ..-++++|.+|.+.+-.=|+|+
T Consensus 353 G~IdFeEFl~lms~~lk---~~d~eeeLreAFk~fDkDgdG~ 391 (440)
T 3u0k_A 353 GTIDFPEFLIMMARKMK---DTDSEEEIREAFRVFDKDGNGY 391 (440)
T ss_dssp SSEEHHHHHHHHHTC---------CHHHHHHHHHHCTTCSSE
T ss_pred CcCcHHHHHHHHHHHhc---CCChHHHHHHHHHHHCCCCcCc
Confidence 77788877766654321 2234566666666665555554
No 100
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=72.23 E-value=23 Score=25.09 Aligned_cols=36 Identities=19% Similarity=0.493 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDP 78 (221)
++..++.....|-..+.+.|..+ .|+.++.++|..|
T Consensus 9 ~~~~l~~~F~~~D~~~~G~i~~~-----e~~~~l~~~~~~~ 44 (147)
T 4ds7_A 9 QIAEFKEAFALFDKDNSGSISAS-----ELATVMRSLGLSP 44 (147)
T ss_dssp HHHHHHHHHHHHCTTCSSEEEHH-----HHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCCCCcCHH-----HHHHHHHHhCCCC
Confidence 45555666666666677777653 5667777888765
No 101
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=71.62 E-value=2.5 Score=28.40 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-----ccccChh-HHHHHHHHH
Q 027597 32 TDLMKEQLATFRSQLEDFARKHKN-----DIRKNPT-FRSQFHEMC 71 (221)
Q Consensus 32 ~~~l~~ql~~F~~~L~~Fa~kh~~-----eI~~dp~-fR~~F~~mC 71 (221)
+.++...|..+. .+|+.+|.. ||+.||+ .+..+++|-
T Consensus 6 ~~~lk~~LK~WE---~~F~~~~GRkP~k~DIk~~p~~I~~~YK~Y~ 48 (56)
T 2kmu_A 6 LRDVRERLQAWE---RAFRRQRGRRPSQDDVEAAPEETRALYREYR 48 (56)
T ss_dssp HHHHHHHHHHHH---HHHHHHTCSCCCHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHhCCCCCHHHHHcCHHHHHHHHHHHH
Confidence 344444454444 367888854 7999999 999998874
No 102
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=71.00 E-value=3.4 Score=30.98 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=37.5
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.++.-|-.||... ..|.+|+.+|++.+++++.-+...|+.|.+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 77 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLN 77 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566677888888 779999999999999999999999998875
No 103
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=70.69 E-value=6.3 Score=27.39 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=35.7
Q ss_pred CcccchhHHHHH-HHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 172 PTELNKDHNQIL-ELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 172 p~Els~D~~~vl-el~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
|..++..+..++ .+....|.+|+.+|++.+|.++.-+...|+.|.+
T Consensus 16 ~~~l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp HHTCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345565565555 4455478899999999999999999999988865
No 104
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=70.63 E-value=4.3 Score=29.91 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=38.3
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.++..+..||......|.+|+.+|++.+++++.-+..+|+.|.+.
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp TCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 356667778888887788999999999999999999999888763
No 105
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=70.25 E-value=3.6 Score=30.71 Aligned_cols=44 Identities=9% Similarity=0.122 Sum_probs=31.4
Q ss_pred ccchhHHHHHHHHHhc--CCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQ--GFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~~--G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.|+..|..||...... |.+|+.+|++.+++++.-+...|+.|.+
T Consensus 38 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 4566677888877765 8999999999999999999999988875
No 106
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=70.17 E-value=24 Score=25.98 Aligned_cols=109 Identities=6% Similarity=0.074 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCC-C
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNG-G 116 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nG-G 116 (221)
|+..++.....|-..+.+.|..+ +|+..+..++.++|.+|-... +.+.+. .....++-.....+.|| |
T Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~-el~~~~~~~l~~~g~~~~~~~---------~~~l~~-~~~~~~~~lf~~~D~d~dg 73 (176)
T 1nya_A 5 ASDRLKKRFDRWDFDGNGALERA-DFEKEAQHIAEAFGKDAGAAE---------VQTLKN-AFGGLFDYLAKEAGVGSDG 73 (176)
T ss_dssp HHHHHHHHHHHCCSSCCSSBCSH-HHHHHHHHHHHHTSSCSSSHH---------HHHHHH-HHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCCCCCcccHH-HHHHHHHHHHHHcCCCCCcHH---------HHHHHH-HHHHHHHHHHHHhCCCCCC
Confidence 45556666667777777777655 455555557888998864321 011111 11112222233334444 8
Q ss_pred cccHHHHHHHHHhhcCCCC----CCCCHHHHHHHHhhccccCCCe
Q 027597 117 LINLQELCNLLRQRRKSNR----EAVSEDDCLRAISKLKVLGNGY 157 (221)
Q Consensus 117 li~l~el~~~v~k~Rg~~~----~~IS~~DI~rAi~~L~~LG~g~ 157 (221)
.|+..|....+........ .....+.+..+.+.+-+=|+|+
T Consensus 74 ~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~ 118 (176)
T 1nya_A 74 SLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQ 118 (176)
T ss_dssp CBCHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSE
T ss_pred eEcHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHhcCCCCCC
Confidence 8999998887766433210 0011244555566655555553
No 107
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=69.87 E-value=5.4 Score=30.40 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=18.0
Q ss_pred ccCC-CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc
Q 027597 112 PHNG-GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV 152 (221)
Q Consensus 112 ~~nG-Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~ 152 (221)
+.|| |.|+..|+...+... | ..+|++++...++.+-+
T Consensus 123 D~d~~G~I~~~El~~~l~~~-g---~~~~~~~~~~~~~~~D~ 160 (195)
T 1qv0_A 123 DKDGSGTITLDEWKAYGKIS-G---ISPSQEDCEATFRHCDL 160 (195)
T ss_dssp C----CEECHHHHHHHHHHH-S---SCCCHHHHHHHHHHSCC
T ss_pred cCCCCCcCcHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCC
Confidence 3343 666666666555443 2 23556655555555433
No 108
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=69.85 E-value=10 Score=25.72 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=36.2
Q ss_pred cchhHHHHHHHHHhc--CCccHHHHHHhc-----CCCHHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELAQAQ--GFVTVDEVERRL-----SWTSGRAIDALDILLEV 218 (221)
Q Consensus 175 ls~D~~~vlel~~~~--G~vt~~~L~~~l-----~W~~~Ra~~~L~~l~~~ 218 (221)
++.-...||++.... +.+|+++|.+.+ +++..=+...|+.|.+.
T Consensus 15 ~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 15 VTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp CCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 355567799988764 799999999999 99999999999888753
No 109
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=69.73 E-value=14 Score=27.75 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHc-CCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKV-GVDPL 79 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~si-GVDPL 79 (221)
|+..++.....|- .+.+.|..+ .|+.++.++ |.+|.
T Consensus 2 ~~~~l~~~F~~~D-d~~G~i~~~-----el~~~l~~~~g~~~~ 38 (173)
T 1alv_A 2 EVRQFRRLFAQLA-GDDMEVSAT-----ELMNILNKVVTRHPD 38 (173)
T ss_dssp HHHHHHHHHHHHH-GGGTSBCHH-----HHHHHHHHHHHTCST
T ss_pred chhHHHHHHHHHh-CCCCCcCHH-----HHHHHHHHhhhcccc
Confidence 4566777777887 788888643 577777776 87764
No 110
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=69.68 E-value=11 Score=28.89 Aligned_cols=36 Identities=11% Similarity=0.302 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCC
Q 027597 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVD 77 (221)
Q Consensus 37 ~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVD 77 (221)
.++..++.....|-..+.+.|..+ .|..++.++|+.
T Consensus 36 ~~~~~l~~~F~~~D~d~~G~i~~~-----El~~~l~~~g~~ 71 (180)
T 3mse_B 36 NHIKYINELFYKLDTNHNGSLSHR-----EIYTVLASVGIK 71 (180)
T ss_dssp HHHHHHHHHHHHHCTTCSSSEEHH-----HHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCCCCcCCHH-----HHHHHHHHcCCC
Confidence 445566666667766777777654 466777777764
No 111
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=69.65 E-value=33 Score=25.78 Aligned_cols=69 Identities=10% Similarity=0.166 Sum_probs=53.6
Q ss_pred cCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc-ccCCCeEEEEeCCEEEEEecCcccchhHHHHHHHHH
Q 027597 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK-VLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQ 187 (221)
Q Consensus 113 ~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~-~LG~g~~vi~i~~~~~v~Svp~Els~D~~~vlel~~ 187 (221)
+--|-++++++++++..... ..+|++++..=++.|. .+..=+++..+....|++ +.. +.|...|++-.+
T Consensus 29 EkK~vl~~e~~~~ki~~Syr---~~ls~~EmE~hl~lL~ellPdWls~~~vR~~~ylK-l~k--~~dl~~i~~rLe 98 (106)
T 3a4c_A 29 ERKPALTMEVVCARMVDSCQ---TALSPGEMEKHLVLLAELLPDWLSLHRIRTDTYVK-LDK--AVDLAGLTARLA 98 (106)
T ss_dssp CSSSEEEHHHHHHHHHHTSC---CSCCHHHHHHHHHHHHHHCTTTEEEEEETTEEEEE-ECT--TSCHHHHHHHHH
T ss_pred cccCCccHHHHHHHHHhhhh---ccCCHHHHHHHHHHHHHhCcchheeeeeeccceee-eeh--hhhHHHHHHHHH
Confidence 33589999999999987654 4699999999999996 456778999999999998 444 445666765544
No 112
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=68.80 E-value=17 Score=32.47 Aligned_cols=102 Identities=13% Similarity=0.208 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCC-
Q 027597 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNG- 115 (221)
Q Consensus 37 ~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nG- 115 (221)
.+++.++..+..|=.++.+.|..+ +|...+..++..+|.+|-... .+....-++-.....+.||
T Consensus 332 ~~~~~l~~~F~~~D~d~dG~I~~~-El~~~l~~~~~~~g~~~~~~~--------------~~~~~~~~~~~~~~~D~d~~ 396 (484)
T 3nyv_A 332 DETKELTAIFHKMDKNGDGQLDRA-ELIEGYKELMRMKGQDASMLD--------------ASAVEHEVDQVLDAVDFDKN 396 (484)
T ss_dssp HHHHHHHHHHHHHCTTCSSEEEHH-HHHHHHHHHHC----CGGGCS--------------HHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCcCCCceEeHH-HHHHHHHHHhhhccccccccc--------------ccccHHHHHHHHHHhCCCCC
Confidence 445566777777777777777664 565566778888888765321 1111222222233334444
Q ss_pred CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 027597 116 GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (221)
Q Consensus 116 Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~ 157 (221)
|.|+.+|....+.... ...+++++.+|.+.+-.=|+|+
T Consensus 397 g~i~~~Ef~~~~~~~~----~~~~~~~~~~~F~~~D~d~dG~ 434 (484)
T 3nyv_A 397 GYIEYSEFVTVAMDRK----TLLSRERLERAFRMFDSDNSGK 434 (484)
T ss_dssp SEEEHHHHHHHHHHHH----HHHHHHHHHHHHHHHCTTCCSE
T ss_pred CeEeHHHHHHHHHhcc----ccCcHHHHHHHHHHHCCCCCCc
Confidence 8899998887766542 2356677777777776666665
No 113
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=68.62 E-value=8.2 Score=28.02 Aligned_cols=45 Identities=9% Similarity=0.146 Sum_probs=39.2
Q ss_pred cccchhHHHHHHHHHhcCCccHHHHHHhcC----CCHHHHHHHHHHHHH
Q 027597 173 TELNKDHNQILELAQAQGFVTVDEVERRLS----WTSGRAIDALDILLE 217 (221)
Q Consensus 173 ~Els~D~~~vlel~~~~G~vt~~~L~~~l~----W~~~Ra~~~L~~l~~ 217 (221)
..|+.-|-.||.+.-..|-+|+.+|++.++ |+..=...+|+.|.+
T Consensus 6 ~~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYK 54 (126)
T ss_dssp CCCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 467888888999988888999999999985 999999999988865
No 114
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=68.47 E-value=9.7 Score=26.22 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 179 ~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
+..||.+....|.+|+.+|++.+|.++.-+...|+.|.+
T Consensus 26 ~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 26 RLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp HHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 556888777777999999999999999999999988864
No 115
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=68.31 E-value=9.2 Score=30.21 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=38.9
Q ss_pred cccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 173 TELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 173 ~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.+|+.-+..+|.+.+..|.+|..+|++.+|.+..-+..-|+.|.+
T Consensus 23 ~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 23 VPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE 67 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356766778999999889999999999999999999998888865
No 116
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=68.10 E-value=7.9 Score=27.76 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 179 ~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
-..||++....| +|+.+|++.+|.++.=++.-|..|.++
T Consensus 19 ~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~e 57 (82)
T 1oyi_A 19 VCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRS 57 (82)
T ss_dssp HHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345788888778 999999999999999888888888664
No 117
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione biosynthesis, gamma-glutamyl transferase, acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB: 3a75_A*
Probab=67.64 E-value=5.4 Score=36.12 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=26.7
Q ss_pred CccchHH-HHHHHHHHHhhhhcccCCCcccHHHHHHH
Q 027597 91 GIGDFYY-ELGVQIVEICLATRPHNGGLINLQELCNL 126 (221)
Q Consensus 91 G~gdfy~-eLavqIvevC~~tr~~nGGli~l~el~~~ 126 (221)
|...||. ++|.+|++.+.+ +||+|+++||-..
T Consensus 210 G~~~FY~G~iA~~iv~~~~~----~GG~lt~~DLa~y 242 (376)
T 2v36_A 210 GTDAFYKGKFAKTLSDTVQD----FGGSMTEKDLENY 242 (376)
T ss_dssp CTHHHHSHHHHHHHHHHHHH----TTCCCCHHHHHHC
T ss_pred CcccccCCHHHHHHHHHHHH----cCCCCCHHHHhhC
Confidence 5567886 899999998874 7999999999865
No 118
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=67.58 E-value=16 Score=23.71 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=38.6
Q ss_pred CcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 027597 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQ 220 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~~ 220 (221)
...|+..+..|+.+. ..|+ |..++++.+|.+..-+..-+..+.+.|.
T Consensus 9 ~~~L~~~e~~il~~~-~~g~-s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQDK-TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHH-TTTC-CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH-HcCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 456899999999886 4455 9999999999999988888888776653
No 119
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET: GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A* 2nqo_A
Probab=67.49 E-value=6.7 Score=35.61 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=26.2
Q ss_pred CccchHH-HHHHHHHHHhhhhcccCCCcccHHHHHHH
Q 027597 91 GIGDFYY-ELGVQIVEICLATRPHNGGLINLQELCNL 126 (221)
Q Consensus 91 G~gdfy~-eLavqIvevC~~tr~~nGGli~l~el~~~ 126 (221)
|...||. ++|.+|++... .+||+|+++||-..
T Consensus 225 G~~~FY~G~iA~~iv~~~~----~~GG~lt~~DLa~y 257 (377)
T 2qmc_A 225 GAKGFYQGQVAELIEKDMK----KNGGIITKEDLASY 257 (377)
T ss_dssp TTHHHHSHHHHHHHHHHHH----HTTCCCCHHHHHTC
T ss_pred CcHhhhCCHHHHHHHHHHH----HcCCCCCHHHHhhC
Confidence 5567885 89999999887 47999999999754
No 120
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=67.30 E-value=9.5 Score=28.07 Aligned_cols=44 Identities=18% Similarity=0.070 Sum_probs=37.3
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..|..||......|. |+++|++.+++++.-+...|+.|.+.
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~ 77 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 456668888888877666 99999999999999999999988763
No 121
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=67.09 E-value=9.5 Score=30.80 Aligned_cols=44 Identities=20% Similarity=0.171 Sum_probs=38.0
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.|+.-|-.||.+....|.+|+.+|++.+++++.-+..+|+.|.+
T Consensus 45 gLt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~ 88 (207)
T 2fxa_A 45 DLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEE 88 (207)
T ss_dssp TCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45666778888887778999999999999999999999988875
No 122
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=67.03 E-value=5.5 Score=29.15 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=38.8
Q ss_pred CcccchhHHHHHHHHHhcCCccHHHHHHhcC----CCHHHHHHHHHHHHH
Q 027597 172 PTELNKDHNQILELAQAQGFVTVDEVERRLS----WTSGRAIDALDILLE 217 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~G~vt~~~L~~~l~----W~~~Ra~~~L~~l~~ 217 (221)
+..|+.-+..||++.-..|-+|+.+|.+.++ |+..-...+|+.|.+
T Consensus 30 ~~~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 30 EFNVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp -CCCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 3457777778999888888999999999985 999999999998875
No 123
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=66.74 E-value=3.9 Score=30.80 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=37.6
Q ss_pred ccchhHHHHHHHH-HhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELA-QAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~-~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..|..||... ...|.+|..+|++.+++++.-+...|+.|.+.
T Consensus 44 ~l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~ 89 (160)
T 3boq_A 44 GLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD 89 (160)
T ss_dssp SCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 3566788888888 45788999999999999999999999888753
No 124
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=66.22 E-value=13 Score=26.87 Aligned_cols=60 Identities=22% Similarity=0.133 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecCcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHH
Q 027597 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDIL 215 (221)
Q Consensus 136 ~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l 215 (221)
...++++.....+.++.|+++. ...||.+... |-+|+.+|++.+|.++.-+...|+.|
T Consensus 5 ~~~~~~~~~~~~~~~~al~~~~---------------------r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L 62 (108)
T 2kko_A 5 SDRKAALLDQVARVGKALANGR---------------------RLQILDLLAQ-GERAVEAIATATGMNLTTASANLQAL 62 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHTTST---------------------THHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CccChhhHHHHHHHHHHhCCHH---------------------HHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3467778888888888887322 2346766654 88999999999999999998888887
Q ss_pred HH
Q 027597 216 LE 217 (221)
Q Consensus 216 ~~ 217 (221)
.+
T Consensus 63 ~~ 64 (108)
T 2kko_A 63 KS 64 (108)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 125
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=66.13 E-value=31 Score=24.95 Aligned_cols=134 Identities=13% Similarity=0.284 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHh-hcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCCCc
Q 027597 39 LATFRSQLEDFARKH-KNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGL 117 (221)
Q Consensus 39 l~~F~~~L~~Fa~kh-~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGl 117 (221)
+..++.....|-..+ .+.|..+ .|..++.++|..|-.. -..++. ...-..+.|.
T Consensus 17 ~~~l~~~F~~~D~~~~~G~i~~~-----e~~~~l~~~~~~~~~~-----------------~~~~~~---~~~D~~~~g~ 71 (161)
T 1dtl_A 17 KNEFKAAFDIFVLGAEDGSISTK-----ELGKVMRMLGQNPTPE-----------------ELQEMI---DEVDEDGSGT 71 (161)
T ss_dssp HHHHHHHHHHHTTTCGGGSBCHH-----HHHHHHHHTTCCCCHH-----------------HHHHHH---HHHCTTSSSS
T ss_pred HHHHHHHHHHHcCCCCCCcCcHH-----HHHHHHHHcCCCCCHH-----------------HHHHHH---HHhCCCCCCe
Confidence 444555566677777 7777643 5778888888754210 011111 1111223478
Q ss_pred ccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCC-EEEEEecCcccchhHH-HHHHHHHh--cCCcc
Q 027597 118 INLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGK-KKLVRSVPTELNKDHN-QILELAQA--QGFVT 193 (221)
Q Consensus 118 i~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~-~~~v~Svp~Els~D~~-~vlel~~~--~G~vt 193 (221)
|+..|....+..........-+.+++..+.+.+-+=|+|+ |+... +.++++....++.+.. .++..+.. .|.||
T Consensus 72 i~~~eF~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~--i~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~ 149 (161)
T 1dtl_A 72 VDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGY--IDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRID 149 (161)
T ss_dssp BCHHHHHHHHHHHHC-----CHHHHHHHHHHHHCTTCSSE--EEHHHHGGGGTTC--CCCHHHHHHHHHHHCTTSSSEEE
T ss_pred EcHHHHHHHHHHHhcccccchHHHHHHHHHHHhCCCCCCc--CcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEe
Confidence 8888887777664321001234556666666666656664 22210 1112222222333331 13333322 57788
Q ss_pred HHHHHH
Q 027597 194 VDEVER 199 (221)
Q Consensus 194 ~~~L~~ 199 (221)
.+++..
T Consensus 150 ~~eF~~ 155 (161)
T 1dtl_A 150 YDEFLE 155 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
No 126
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=65.79 E-value=9.2 Score=30.14 Aligned_cols=43 Identities=9% Similarity=0.070 Sum_probs=37.4
Q ss_pred cchhHHHHHHHHHh--cCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELAQA--QGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 175 ls~D~~~vlel~~~--~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
|+.-|-.||..... .|.+|+.+|++.+++++.-+...|+.|.+
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67778888887775 67999999999999999999999998875
No 127
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=65.64 E-value=6.6 Score=30.00 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=35.5
Q ss_pred CcccchhHHHHHHHHHhc--CCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 172 PTELNKDHNQILELAQAQ--GFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~--G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
+..|+.-|..||.+.... +.+|+.+|++.+++++.-+..+|+.|.+
T Consensus 41 ~~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 41 QFELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp TTTCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 345677788888887764 5899999999999999999999988875
No 128
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=65.17 E-value=9.7 Score=27.78 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=35.0
Q ss_pred cchhHHHHHHHHH-hcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELAQ-AQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 175 ls~D~~~vlel~~-~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
++.-+..+|.+.. ..|.+|+.+|++.+|+++.-+...|+.|.+
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4555666777765 357899999999999999999999988875
No 129
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=65.11 E-value=9.2 Score=28.43 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=36.0
Q ss_pred ccchhHHHHHHHHHh-cCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~-~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.|+.-|..||.+... .+.+|+.+|++.+++++.-+...|+.|.+
T Consensus 36 glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp TCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 456667778887754 45799999999999999999999988875
No 130
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=64.84 E-value=8.3 Score=32.59 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=40.5
Q ss_pred CcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
|..|+..+..+|+.....|.+|+.+|++.+|.++.-+...|+.|.+
T Consensus 147 ~~~L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~ 192 (244)
T 2wte_A 147 MRDYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKK 192 (244)
T ss_dssp HSCCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578888999999877778899999999999999999999988865
No 131
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=64.76 E-value=30 Score=24.50 Aligned_cols=33 Identities=9% Similarity=0.299 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 42 FRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 42 F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
++.....|-..+.+.|..+ .|..++.++|+.|-
T Consensus 7 l~~~F~~~D~d~~G~i~~~-----e~~~~l~~~~~~~~ 39 (145)
T 2bl0_B 7 IQECFQIFDKDNDGKVSIE-----ELGSALRSLGKNPT 39 (145)
T ss_dssp HHHHHHHHCTTCSSCEEGG-----GHHHHHHHTTCCCC
T ss_pred HHHHHHHhCCCCcCccCHH-----HHHHHHHHhCCCCC
Confidence 5555566666677777655 46677777787653
No 132
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=64.34 E-value=8.5 Score=36.69 Aligned_cols=43 Identities=26% Similarity=0.223 Sum_probs=38.8
Q ss_pred cchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 175 ls~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
++.++..||.++...+.+|..+|++.+|.+...++.+|..|+.
T Consensus 428 ~~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~ 470 (583)
T 3lmm_A 428 DDYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQ 470 (583)
T ss_dssp TCHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 4556678999999999999999999999999999999999986
No 133
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=64.16 E-value=30 Score=24.82 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=49.6
Q ss_pred CCCCCCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecCcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHH
Q 027597 132 KSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDA 211 (221)
Q Consensus 132 g~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~ 211 (221)
++....++++++.+..+.++.|++ ..+..+|.+... |..|+.+|++.+|.++.-+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~---------------------~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~ 65 (119)
T 2lkp_A 8 NRPSAPLDSQAAAQVASTLQALAT---------------------PSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQ 65 (119)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHCC---------------------HHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHhCC---------------------HHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHH
Confidence 333456778888888888887763 235567777666 8899999999999999999888
Q ss_pred HHHHHH
Q 027597 212 LDILLE 217 (221)
Q Consensus 212 L~~l~~ 217 (221)
|..|.+
T Consensus 66 l~~Le~ 71 (119)
T 2lkp_A 66 LRVLRN 71 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
No 134
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=63.93 E-value=26 Score=24.89 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecCcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHH
Q 027597 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDIL 215 (221)
Q Consensus 136 ~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l 215 (221)
..++++++......++.|+++. ...||.+.. .|-.|+.+|++.+|.++.-+...|..|
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~~~---------------------r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L 63 (106)
T 1r1u_A 6 SEINTDTLERVTEIFKALGDYN---------------------RIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLL 63 (106)
T ss_dssp ---CHHHHHHHHHHHHHTCSHH---------------------HHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHH---------------------HHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4578888888888888877322 344776666 477899999999999999888888887
Q ss_pred HH
Q 027597 216 LE 217 (221)
Q Consensus 216 ~~ 217 (221)
.+
T Consensus 64 ~~ 65 (106)
T 1r1u_A 64 KS 65 (106)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 135
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=63.93 E-value=17 Score=23.17 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCccHHHHHHhc-----CCCHHHHHHHHHH
Q 027597 181 QILELAQAQGFVTVDEVERRL-----SWTSGRAIDALDI 214 (221)
Q Consensus 181 ~vlel~~~~G~vt~~~L~~~l-----~W~~~Ra~~~L~~ 214 (221)
.++.+....+++|+++|.+.+ +.+..=....|++
T Consensus 9 ~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~ 47 (64)
T 2p5k_A 9 KIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKE 47 (64)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 356677778999999999999 9998777777763
No 136
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.71 E-value=11 Score=27.64 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=38.2
Q ss_pred cccchhHHHHHHHHHhcCC--ccHHHHHHhcCCCHHHHHHHHHHHH
Q 027597 173 TELNKDHNQILELAQAQGF--VTVDEVERRLSWTSGRAIDALDILL 216 (221)
Q Consensus 173 ~Els~D~~~vlel~~~~G~--vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (221)
..|+.++..|+.+++..|- ++..+|+...+.+..-...+|..|-
T Consensus 33 ~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE 78 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLE 78 (95)
T ss_dssp CSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4789999999999998664 9999999999999888888877764
No 137
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=62.59 E-value=14 Score=27.69 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=39.1
Q ss_pred ccchhHHHHHHHHHh-cCCccHHHHHHhcC----CCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQA-QGFVTVDEVERRLS----WTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~-~G~vt~~~L~~~l~----W~~~Ra~~~L~~l~~ 217 (221)
.|+.-|..||.+.-. .|.+|+.+|.+.++ |+..-...+|+.|.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK 54 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 578888889999887 58999999999997 999999999998875
No 138
>2nlz_A Cephalosporin acylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans} SCOP: d.153.1.6
Probab=62.01 E-value=11 Score=35.71 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=26.7
Q ss_pred CccchHH-HHHHHHHHHhhhhcccCCCcccHHHHHHH
Q 027597 91 GIGDFYY-ELGVQIVEICLATRPHNGGLINLQELCNL 126 (221)
Q Consensus 91 G~gdfy~-eLavqIvevC~~tr~~nGGli~l~el~~~ 126 (221)
|...||. ++|.+|++.+.+ +||+|+++||-..
T Consensus 215 G~~~FY~G~iA~~iv~~~~~----~GG~lt~~DLa~y 247 (547)
T 2nlz_A 215 NGESFYRGELADQIHAFFDK----HGGYLTKEDLACY 247 (547)
T ss_dssp TTHHHHHSHHHHHHHHHHHH----TTCCCCHHHHHTC
T ss_pred CchhhcCCHHHHHHHHHHHh----cCCCCCHHHHhhC
Confidence 4567887 899999998874 7999999999754
No 139
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=61.32 E-value=45 Score=24.40 Aligned_cols=127 Identities=12% Similarity=0.157 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCCCc
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGL 117 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGl 117 (221)
++..++.....|-..+.+.|..+ +|+..++.+....|.+|-.. ++..++..+..+-.....+ +.|-
T Consensus 4 ~~~~l~~~F~~~D~d~~G~i~~~-El~~~l~~~~~~~g~~~~~~------------~~~~~~~~~~~~~l~~~~D-~~g~ 69 (174)
T 1q80_A 4 WVQKMKTYFNRIDFDKDGAITRM-DFESMAERFAKESEMKAEHA------------KVLMDSLTGVWDNFLTAVA-GGKG 69 (174)
T ss_dssp HHHHHHHHHHHHCTTCSSEESHH-HHHHHHHHHHHHSSCCTTHH------------HHHHHHHHHHHHHTGGGTT-TTSC
T ss_pred HHHHHHHHHHhcCCCCCCcEeHH-HHHHHHHHHHHHhCCCCCcH------------HHHHHHHHHHHHHHHHhcC-CCCe
Confidence 44555666666766777777654 44444444444444765321 1122222222233333333 5566
Q ss_pred ccHHHHHHHHHhhcC---------------------CCCCCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecCcccc
Q 027597 118 INLQELCNLLRQRRK---------------------SNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELN 176 (221)
Q Consensus 118 i~l~el~~~v~k~Rg---------------------~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp~Els 176 (221)
|+..|....+..... .....||.+++.+++..+ | + .+.
T Consensus 70 i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~---g--~-------------~~~--- 128 (174)
T 1q80_A 70 IDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGML---G--L-------------DKT--- 128 (174)
T ss_dssp EEHHHHHHHHHHHTTSTTCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHHHHH---T--C-------------CGG---
T ss_pred EcHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc---C--C-------------CHH---
Confidence 677766655544322 112457777777776665 1 0 111
Q ss_pred hhHHHHHHHHHh--cCCccHHHHHHh
Q 027597 177 KDHNQILELAQA--QGFVTVDEVERR 200 (221)
Q Consensus 177 ~D~~~vlel~~~--~G~vt~~~L~~~ 200 (221)
+-..++..+.. .|.||.++....
T Consensus 129 -~~~~~~~~~D~d~dg~i~~~ef~~~ 153 (174)
T 1q80_A 129 -MAPASFDAIDTNNDGLLSLEEFVIA 153 (174)
T ss_dssp -GHHHHHHHHCTTCSSSBCHHHHHHH
T ss_pred -HHHHHHHHhCCCCCceEeHHHHHHH
Confidence 12234554432 588999887654
No 140
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=59.28 E-value=19 Score=25.99 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
++..++.....|-..+.+.|..+. |..++.++|..|-
T Consensus 8 ~~~~l~~~F~~~D~d~~G~i~~~e-----l~~~l~~~g~~~~ 44 (151)
T 1w7j_B 8 QLEEFKEAFELFDRVGDGKILYSQ-----CGDVMRALGQNPT 44 (151)
T ss_dssp ---CHHHHHHHHCCSSSSEEESTT-----HHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHCCCCCCcCcHHH-----HHHHHHHcCCCCC
Confidence 344556666677777778887764 6677778888764
No 141
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=58.50 E-value=28 Score=26.86 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
++..++.....|-..+.+.|..+ .|..++.++|+.|-
T Consensus 50 ~~~~l~~~F~~~D~d~~G~i~~~-----El~~~l~~~g~~~~ 86 (191)
T 3k21_A 50 DVEKLKSTFLVLDEDGKGYITKE-----QLKKGLEKDGLKLP 86 (191)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHH-----HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHCCCCCCCCcHH-----HHHHHHHHcCCCcH
Confidence 44555666666666666666643 56677777887653
No 142
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=58.39 E-value=11 Score=33.91 Aligned_cols=135 Identities=16% Similarity=0.251 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCC-Cc
Q 027597 39 LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNG-GL 117 (221)
Q Consensus 39 l~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nG-Gl 117 (221)
+..+++....|=.++.+.|..+ +|..++..+|.+|.... |. ......++-.....+.|| |.
T Consensus 345 ~~~l~~~F~~~D~d~dG~I~~~-----El~~~l~~~~~~~~~~~--------~~-----~~~~~~~~~~~~~~D~d~~G~ 406 (494)
T 3lij_A 345 TKELTDIFRHIDKNGDGQLDRQ-----ELIDGYSKLSGEEVAVF--------DL-----PQIESEVDAILGAADFDRNGY 406 (494)
T ss_dssp HHHHHHHHHHHCTTCSSEECHH-----HHHHTTHHHHSSCCCCC---------------CHHHHHHHHHHHHHCTTCSSS
T ss_pred HHHHHHHHHHhCcCCCCeEcHH-----HHHHHHHHhcccccccc--------cc-----cccHHHHHHHHHHhCCCCCCc
Confidence 3444555555544555555433 45555666665544321 11 112233333334445554 89
Q ss_pred ccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCC-EEEEEecCcccchhH-HHHHHHHHh--cCCcc
Q 027597 118 INLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGK-KKLVRSVPTELNKDH-NQILELAQA--QGFVT 193 (221)
Q Consensus 118 i~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~-~~~v~Svp~Els~D~-~~vlel~~~--~G~vt 193 (221)
|+..|....+.+.. ...+++++.+|.+.+-.=|+|+ |+... +.++.. ..++.+. ..++..+.. -|.||
T Consensus 407 I~~~EF~~~~~~~~----~~~~~~~~~~~F~~~D~d~~G~--Is~~El~~~l~~--~~~~~~~~~~~~~~~D~d~dG~I~ 478 (494)
T 3lij_A 407 IDYSEFVTVAMDRK----SLLSKDKLESAFQKFDQDGNGK--ISVDELASVFGL--DHLESKTWKEMISGIDSNNDGDVD 478 (494)
T ss_dssp EEHHHHHHHHSCHH----HHTCHHHHHHHHHHHCTTCSSE--ECHHHHHHHC-C--CSCCCHHHHHHHHTTCSSSSSSEE
T ss_pred CcHHHHHHHHHhhh----ccccHHHHHHHHHHHCCCCCCc--CCHHHHHHHHHh--cCCCHHHHHHHHHHhCCCCCCcCC
Confidence 99999998876543 2367888999998888877775 22221 111111 2233322 112332222 58899
Q ss_pred HHHHHH
Q 027597 194 VDEVER 199 (221)
Q Consensus 194 ~~~L~~ 199 (221)
.+++..
T Consensus 479 ~~EF~~ 484 (494)
T 3lij_A 479 FEEFCK 484 (494)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 143
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=58.28 E-value=32 Score=24.54 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhh
Q 027597 34 LMKEQLATFRSQLEDFARKH---KNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLAT 110 (221)
Q Consensus 34 ~l~~ql~~F~~~L~~Fa~kh---~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~t 110 (221)
+|.+.++.++.....|..+. .+-|..+ .|+.++.++|-+++... .....++-.+..
T Consensus 5 ~le~~i~~l~~~F~~fD~~~g~~~G~Is~~-----EL~~~l~~~~~~~l~~~----------------~~~~ev~~~i~~ 63 (100)
T 3nxa_A 5 ELEKAVIVLVENFYKYVSKYSLVKNKISKS-----SFREMLQKELNHMLSDT----------------GNRKAADKLIQN 63 (100)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCSCTTCBCHH-----HHHHHHHHHSTTTTCSS----------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcCCCCCCeEcHH-----HHHHHHHHHcccccccc----------------ccHHHHHHHHHH
Confidence 57888889999999998763 5778765 45566666553433211 112233444445
Q ss_pred cccCC-CcccHHHHHHHHHhh
Q 027597 111 RPHNG-GLINLQELCNLLRQR 130 (221)
Q Consensus 111 r~~nG-Gli~l~el~~~v~k~ 130 (221)
.+.|| |.|+..|-+..+.+.
T Consensus 64 ~D~d~DG~Idf~EF~~~m~~~ 84 (100)
T 3nxa_A 64 LDANHDGRISFDEYWTLIGGI 84 (100)
T ss_dssp SCCCSSCCBCHHHHHHHHHHH
T ss_pred hCCCCCCCCcHHHHHHHHHHH
Confidence 56666 999999988877663
No 144
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=58.11 E-value=5.3 Score=31.04 Aligned_cols=36 Identities=17% Similarity=0.449 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
++..++.....|-..+.+.|..+ .|..+ .++|++|.
T Consensus 27 ~~~~l~~~F~~~D~d~dG~I~~~-----El~~~-~~lg~~~~ 62 (202)
T 2bec_A 27 SLLRLHHRFRALDRNKKGYLSRM-----DLQQI-GALAVNPL 62 (202)
T ss_dssp HHHHHHHHHHHHCSSCSSCCCHH-----HHHTC-HHHHHSTT
T ss_pred HHHHHHHHHHHHCCCCCCCcCHH-----HHHHH-HhcCCCcc
Confidence 34445555555655666666543 34444 55666553
No 145
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=57.69 E-value=39 Score=22.43 Aligned_cols=83 Identities=14% Similarity=0.215 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhccc-CCCc
Q 027597 39 LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPH-NGGL 117 (221)
Q Consensus 39 l~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~-nGGl 117 (221)
.+.++.....|-.++.+-|..+ .|+.++.++|..+-. + -++-+...-+. +.|.
T Consensus 8 ~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~~-----------------~----~~~~l~~~~d~~~dg~ 61 (92)
T 2kn2_A 8 EEELKEAFKVFDKDQNGYISAS-----ELRHVMINLGEKLTD-----------------E----EVEQMIKEADLDGDGQ 61 (92)
T ss_dssp HHHHHHHHHHHCTTCSSEECHH-----HHHHHHHHTTCCCCH-----------------H----HHHHHHHHHCSSCCSS
T ss_pred HHHHHHHHHHHCCCCCCeEcHH-----HHHHHHHHhCCCCCH-----------------H----HHHHHHHHhCCCCCCc
Confidence 3445555666666666666643 566788888854210 0 01112222233 3489
Q ss_pred ccHHHHHHHHHhhcCCCCCCCCHHHHHHHHh
Q 027597 118 INLQELCNLLRQRRKSNREAVSEDDCLRAIS 148 (221)
Q Consensus 118 i~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~ 148 (221)
|+..|.+..+.+..+.. ...+.+++.+|.+
T Consensus 62 i~~~eF~~~~~~~~~~~-~~~~~~~l~~aF~ 91 (92)
T 2kn2_A 62 VNYEEFVKMMMTVRGGG-GGNGWSRLRRKFS 91 (92)
T ss_dssp EEHHHHHHHHHHHTTTC-CCHHHHHHHHHHT
T ss_pred EeHHHHHHHHHhccCCC-CCchHHHHHHHhc
Confidence 99999998888766532 2345577877754
No 146
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=57.17 E-value=13 Score=28.02 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=36.0
Q ss_pred ccchhHHHHHHHHH--hcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQ--AQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~--~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.|+.-|-.+|.+.. ..|-+|+++|++.++.++.-+-..|+.|.+
T Consensus 32 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 32 GLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp TCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 35666777877664 357899999999999999999999998875
No 147
>3jtn_A YPBH, adapter protein MECA 2; adaptor protein, competence, sporulation, protein binding; 2.09A {Bacillus subtilis} PDB: 3jto_A
Probab=56.13 E-value=51 Score=23.32 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=41.8
Q ss_pred CHHHHHHHHhhcccc-CCCeEEEEeCCEEEEEecCcccchhHHHHHHHHHh---cCCccHHHHHHh
Q 027597 139 SEDDCLRAISKLKVL-GNGYEVISVGKKKLVRSVPTELNKDHNQILELAQA---QGFVTVDEVERR 200 (221)
Q Consensus 139 S~~DI~rAi~~L~~L-G~g~~vi~i~~~~~v~Svp~Els~D~~~vlel~~~---~G~vt~~~L~~~ 200 (221)
+-||++.+++.|.++ ...=.+-+.+|+.|+.-.+.+.+.+ ..++.++.+ ...+|..-|.+.
T Consensus 9 ~~edvI~~a~~l~~~~~~~s~LYk~~~~YYL~l~~~~~~~~-~~~~a~l~EYg~~s~~t~~~L~Eh 73 (91)
T 3jtn_A 9 SFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTA-EGVVAVLAEYGNPTTLTIYRLQEY 73 (91)
T ss_dssp SHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEECCCTTCCH-HHHHHHHHHHCEECCCCHHHHHHH
T ss_pred CHHHHHHHHHHccccCCCCceeEEECCEEEEEEeeCCCChH-HHHHHHHHHhCCCCcccHHHHHhh
Confidence 568999999999765 4556677889999998544444433 555555554 345777777754
No 148
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=56.09 E-value=22 Score=27.29 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=34.8
Q ss_pred ccchhHHHHHH-HHHh----cCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILE-LAQA----QGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vle-l~~~----~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.||.++..++- +... ..+.|.++|++.+|.+..-+...|+.|++.
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46666655543 3331 468999999999999999999999999863
No 149
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=55.71 E-value=16 Score=30.03 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=37.2
Q ss_pred HHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhc
Q 027597 50 ARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATR 111 (221)
Q Consensus 50 a~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr 111 (221)
..+...|+-+||.+-..+...-..-|++.-. .+ ..|..-|.||.++-.-|...|
T Consensus 17 ~e~kaket~kN~kls~~L~~~i~ea~~~~~~------dk--~~g~LLy~latk~k~~~~~~r 70 (187)
T 3tl4_X 17 EDKKVKEIVKNKKVSDSLYKLIKETPSDYQW------NK--STRALVHNLASFVKGTDLPKS 70 (187)
T ss_dssp CHHHHHHHTTSHHHHHHHHHHHHTSCTTCCC------CH--HHHHHHHHHHHHHTTCCCTTH
T ss_pred ChhHHHHHHhCHHHHHHHHHHHHHccccCCC------CH--HHHHHHHHHHHhccCccchhH
Confidence 3456678889999999999998887764211 11 137889999988755444433
No 150
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=55.62 E-value=24 Score=26.71 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=35.8
Q ss_pred ccchhHHHHHHHHHh-cCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 174 Els~D~~~vlel~~~-~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.|+.-|-.||..... .+.+|..+|++.++.++.-+-.+|+.|.+
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 456667777776654 56789999999999999999999999875
No 151
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=55.60 E-value=19 Score=25.77 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=40.2
Q ss_pred CcccchhHHHHHHHHHhcC-CccHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 027597 172 PTELNKDHNQILELAQAQG-FVTVDEVERRLSWTSGRAIDALDILLEVL 219 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~G-~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~ 219 (221)
|..++.-..+||++..+.| =++..+|++.+|.++--...||..|-+|-
T Consensus 14 ~~~~~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEg 62 (80)
T 2lnb_A 14 PGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKEL 62 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CcccchHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 5555555778999998854 69999999999999999999999988763
No 152
>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein; 1.76A {Borna disease virus} SCOP: a.206.1.1 PDB: 1pp1_X*
Probab=55.48 E-value=14 Score=32.63 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCh-hHHHHHHHHHHHcC
Q 027597 34 LMKEQLATFRSQLEDFARKHKNDIRKNP-TFRSQFHEMCAKVG 75 (221)
Q Consensus 34 ~l~~ql~~F~~~L~~Fa~kh~~eI~~dp-~fR~~F~~mC~siG 75 (221)
++++.+..+++-|.--|.--.+.|..+. ++.++|+.|.+|||
T Consensus 137 e~SSI~~HCC~LLIGv~~gSS~kI~t~s~QvqrrFKamMasi~ 179 (375)
T 1n93_X 137 EISSIFSHCCSLLIGVVIGSSSKIKAGAEQIKKRFKTMMAALN 179 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhhcCCccccccHHHHHHHHHHHHHHcC
Confidence 5889999999999999999999998886 59999999999999
No 153
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=54.65 E-value=32 Score=30.75 Aligned_cols=142 Identities=16% Similarity=0.221 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCC-C
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNG-G 116 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nG-G 116 (221)
+...++.....|=.++.+.|..+ +|..-+..++..+|.+|-.... .......+...++ ....+.|| |
T Consensus 329 ~~~~l~~~F~~~D~d~dG~I~~~-El~~~l~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~----~~~~D~d~dG 396 (486)
T 3mwu_A 329 ETKQLTEIFRKLDTNNDGMLDRD-ELVRGYHEFMRLKGVDSNSLIQ-------NEGSTIEDQIDSL----MPLLDMDGSG 396 (486)
T ss_dssp HHHHHHHHHHHHCTTCSSSBCHH-HHHHHHHHHHHHHTCCGGGHHH-------HTSSCHHHHHHHH----HHHHCTTCCS
T ss_pred HHHHHHHHHHHhCCCCCceeeHH-HHHHHHHHhhhhhcccchhccc-------ccchhhHHHHHHH----HHHhcCCCCC
Confidence 34556666666666666666654 4555667777888887542100 0011222222223 33334454 8
Q ss_pred cccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCC-EEEEEecCcccchhHHHHHHHHH-----hcC
Q 027597 117 LINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGK-KKLVRSVPTELNKDHNQILELAQ-----AQG 190 (221)
Q Consensus 117 li~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~-~~~v~Svp~Els~D~~~vlel~~-----~~G 190 (221)
.|+..|.+..+.... ...+++++..+.+.+-.=|+|+ |+... +.+++.....++.+. +-++.. ..|
T Consensus 397 ~I~~~Ef~~~~~~~~----~~~~~~~~~~~F~~~D~d~dG~--Is~~El~~~l~~~g~~~~~~~--~~~~~~~~D~d~dG 468 (486)
T 3mwu_A 397 SIEYSEFIASAIDRT----ILLSRERMERAFKMFDKDGSGK--ISTKELFKLFSQADSSIQMEE--LESIIEQVDNNKDG 468 (486)
T ss_dssp SBCHHHHHHHHSCTT----TTCCHHHHHHHHHHHCSSCSSS--BCSSCC----------------------CCCCSSCSS
T ss_pred cCcHHHHHHHHHhhh----ccchHHHHHHHHHHhCCCCCCc--CCHHHHHHHHHHcCCCCCHHH--HHHHHHHhCCCCCC
Confidence 999999987776543 3468899999999998878885 33332 333433322333322 323322 158
Q ss_pred CccHHHHHH
Q 027597 191 FVTVDEVER 199 (221)
Q Consensus 191 ~vt~~~L~~ 199 (221)
.||.++...
T Consensus 469 ~I~~~EF~~ 477 (486)
T 3mwu_A 469 EVDFNEFVE 477 (486)
T ss_dssp SBCHHHHHH
T ss_pred cEeHHHHHH
Confidence 999988764
No 154
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=54.35 E-value=19 Score=26.66 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=29.7
Q ss_pred HHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 182 vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
++.+....|.+|+.+|++.+|.++.-+..+|+.|.+
T Consensus 13 i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344455568899999999999999999999988865
No 155
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=53.88 E-value=80 Score=25.30 Aligned_cols=143 Identities=14% Similarity=0.142 Sum_probs=80.9
Q ss_pred ccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCC--C
Q 027597 58 RKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSN--R 135 (221)
Q Consensus 58 ~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~--~ 135 (221)
--.|.++..|.+.+...+.|.- ++ .++| +=|++++.-+ .... -=+|+=---...+.+.-+.. .
T Consensus 11 apy~~l~~~~~~i~~e~~~~i~-----i~-----~~~l--~~~v~~a~~~-~~~~--dVIISRGgta~~lr~~~~iPVV~ 75 (196)
T 2q5c_A 11 SQNENLLNLFPKLALEKNFIPI-----TK-----TASL--TRASKIAFGL-QDEV--DAIISRGATSDYIKKSVSIPSIS 75 (196)
T ss_dssp ESCHHHHHHHHHHHHHHTCEEE-----EE-----ECCH--HHHHHHHHHH-TTTC--SEEEEEHHHHHHHHTTCSSCEEE
T ss_pred EccHHHHHHHHHHHhhhCCceE-----EE-----ECCH--HHHHHHHHHh-cCCC--eEEEECChHHHHHHHhCCCCEEE
Confidence 3456777777777776654311 00 2443 3355555554 2110 01344334444555433221 1
Q ss_pred CCCCHHHHHHHHhhccccCCCeEEEEeCCE----------------EEEEecCcccchhHHHHHHHHHh-----cCCccH
Q 027597 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKK----------------KLVRSVPTELNKDHNQILELAQA-----QGFVTV 194 (221)
Q Consensus 136 ~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~----------------~~v~Svp~Els~D~~~vlel~~~-----~G~vt~ 194 (221)
-.+|--||++|++..+..+.-+-++.+++. .+.-..|.|+ ...+.++.+. .|-..+
T Consensus 76 I~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~---~~~i~~l~~~G~~vvVG~~~~ 152 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEI---TTLISKVKTENIKIVVSGKTV 152 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGH---HHHHHHHHHTTCCEEEECHHH
T ss_pred EcCCHhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHH---HHHHHHHHHCCCeEEECCHHH
Confidence 379999999999999999888888887631 1111222222 2234444332 255777
Q ss_pred HHHHHhcCCC-------HHHHHHHHHHHHHH
Q 027597 195 DEVERRLSWT-------SGRAIDALDILLEV 218 (221)
Q Consensus 195 ~~L~~~l~W~-------~~Ra~~~L~~l~~~ 218 (221)
-.+++++|.. .+=.+.||++.++-
T Consensus 153 ~~~A~~~Gl~~vli~sg~eSI~~Ai~eA~~l 183 (196)
T 2q5c_A 153 TDEAIKQGLYGETINSGEESLRRAIEEALNL 183 (196)
T ss_dssp HHHHHHTTCEEEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEecCHHHHHHHHHHHHHH
Confidence 8888899864 77777788776653
No 156
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=53.84 E-value=20 Score=26.74 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=36.0
Q ss_pred cchhHHHHHHHHHhcCCccHHHHHHhc--CCCHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELAQAQGFVTVDEVERRL--SWTSGRAIDALDILLE 217 (221)
Q Consensus 175 ls~D~~~vlel~~~~G~vt~~~L~~~l--~W~~~Ra~~~L~~l~~ 217 (221)
++.-...||++....|..|+.+|++.+ |.+..-+..-|..|.+
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~ 55 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLAD 55 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 444446699998888999999999999 9999998888888765
No 157
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=52.95 E-value=45 Score=23.74 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEec
Q 027597 97 YELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSV 171 (221)
Q Consensus 97 ~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Sv 171 (221)
-++.-+|.++|... + +| |+-++|...+ +.|+.+|...||+.|=.-| -+++++-++..+-+-+
T Consensus 13 ~~ie~~IL~l~~~~-P-~G--Itd~~L~~~~--------p~~~~~~r~~aIN~LL~~g-kiel~K~~~~liYr~k 74 (81)
T 2dk8_A 13 VEIENRIIELCHQF-P-HG--ITDQVIQNEM--------PHIEAQQRAVAINRLLSMG-QLDLLRSNTGLLYRIK 74 (81)
T ss_dssp HHHHHHHHHHHHHC-S-SC--EEHHHHHHHC--------TTSCHHHHHHHHHHHHHHT-SEEEEECSSSEEEEEC
T ss_pred HHHHHHHHHHHHhC-C-CC--CCHHHHHHHC--------CCCCHHHHHHHHHHHHHcC-CeEEEecCCeEEEEec
Confidence 57788899999664 2 43 5667766554 3489999999999997645 6788887766555544
No 158
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=52.90 E-value=39 Score=24.14 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHhhhhcccCCCc--ccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc
Q 027597 94 DFYYELGVQIVEICLATRPHNGGL--INLQELCNLLRQRRKSNREAVSEDDCLRAISKLK 151 (221)
Q Consensus 94 dfy~eLavqIvevC~~tr~~nGGl--i~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~ 151 (221)
..-|.+|.+|.+-.... |+ +.++.+...|.-+-......+|++++..+++.+.
T Consensus 31 K~SYaIG~~mG~~L~~~-----g~~~lD~dav~~Gl~Dal~Gk~~~ls~eei~~~l~~~~ 85 (88)
T 3b09_A 31 HASYGVGRQMGEQLAAN-----SFEGIDIPAVQAGLADAFAGKESAVSMEELQVAFTEIS 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHS-----CCTTCCHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-----CccccCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 46788888888866432 22 7999999999988766656899999999998764
No 159
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=52.50 E-value=23 Score=24.21 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 179 ~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
+..||......|.+|..+|++.+|.++.-+...|+.|.+.
T Consensus 18 ~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4457776655688999999999999999999999888653
No 160
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=52.47 E-value=63 Score=27.08 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=57.2
Q ss_pred CCcccHHHHHHHHHhhcCCCCCCC---CHHHHHHHHh-hccccCCCeEEEEeC----C-EEEEE--ecCcccch------
Q 027597 115 GGLINLQELCNLLRQRRKSNREAV---SEDDCLRAIS-KLKVLGNGYEVISVG----K-KKLVR--SVPTELNK------ 177 (221)
Q Consensus 115 GGli~l~el~~~v~k~Rg~~~~~I---S~~DI~rAi~-~L~~LG~g~~vi~i~----~-~~~v~--Svp~Els~------ 177 (221)
-|.|+.+|+...+.+-.......+ .-+|++..|+ .|++|| |+|...- | +.|+- ..+++++.
T Consensus 17 rg~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~I~~IN~~L~~l~--~~Ir~~~~q~~g~~~y~lVN~~~d~~~klaT~yt 94 (238)
T 3nw0_A 17 HGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLESLY--IEIKRGVTEDDGRPIYALVNLATTSISKMATDFA 94 (238)
T ss_dssp SSEEEHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHGGGT--EEEEEEECTTTCCEEEEEEESSSCTTHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhhhcC--cEEEEeecCCCCCEEEEEEeCCCCHHHhhccCCC
Confidence 577888877766655321111222 4556666665 467877 7776662 3 44443 44444432
Q ss_pred -hHHH----HHHH-HH-hcCCccHHHHHH---h---cCCCHHHHHHHHHHHHHH
Q 027597 178 -DHNQ----ILEL-AQ-AQGFVTVDEVER---R---LSWTSGRAIDALDILLEV 218 (221)
Q Consensus 178 -D~~~----vlel-~~-~~G~vt~~~L~~---~---l~W~~~Ra~~~L~~l~~~ 218 (221)
++.+ +++. ++ ..|.++..+.-. . -+.++.+|+.+|+.|+++
T Consensus 95 ~~Ei~~fk~lle~i~~s~~~~~s~~~~lnl~~~~~~k~l~~~eae~lL~~lv~~ 148 (238)
T 3nw0_A 95 ENELDLFRKALELIIDSETGFASSTNILNLVDQLKGKKMRKKEAEQVLQKFVQN 148 (238)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCEEHHHHHGGGTTCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCceeHHHHHHHHhhcccCCCCHHHHHHHHHHHHHh
Confidence 2222 2333 22 267777544332 1 478999999999999874
No 161
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=51.83 E-value=9 Score=28.85 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhh
Q 027597 31 RTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLAT 110 (221)
Q Consensus 31 ~~~~l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~t 110 (221)
.+.++..+++.++.....|-.++.+.|..+ .|+.++.++|.++-. + -...++. .
T Consensus 39 ~~~~l~~~~~~l~~~F~~~D~d~dG~I~~~-----El~~~l~~~g~~~~~-------------~----~~~~l~~----~ 92 (147)
T 1wy9_A 39 NDEDLPSKLEAFKVKYMEFDLNGNGDIDIM-----SLKRMLEKLGVPKTH-------------L----ELKRLIR----E 92 (147)
T ss_dssp TCTTHHHHHHHHHHHHTTSCCCTTSSEEHH-----HHHHHHHHTTCCCCH-------------H----HHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHhCCCCCH-------------H----HHHHHHH----H
Confidence 445566778888888888877777777655 567788888865211 0 0112222 2
Q ss_pred cccC-CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeE
Q 027597 111 RPHN-GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYE 158 (221)
Q Consensus 111 r~~n-GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~ 158 (221)
-+.| .|.|+..|.+..+.+. .+++.+|.+.+..=|+|..
T Consensus 93 ~D~d~dg~I~~~eF~~~~~~~---------~~~~~~aF~~~D~d~~g~~ 132 (147)
T 1wy9_A 93 VSSGSEETFSYSDFLRMMLGK---------RSAILRMILMYEEKNKEHK 132 (147)
T ss_dssp HCSSCTTEECHHHHHHHHCSS---------GGGGGGGGGGCCCC-----
T ss_pred hCCCCCCcEeHHHHHHHHHHh---------HHHHHHHHHHHccCCCCCC
Confidence 2334 4899999999877642 5678888888888777774
No 162
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=51.61 E-value=28 Score=24.54 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 179 ~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
+..||.+. ..|-+|+.+|++.+|+++.-+...|..|.+
T Consensus 23 r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 23 RWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44577777 457799999999999999999999988864
No 163
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=51.37 E-value=10 Score=29.41 Aligned_cols=45 Identities=16% Similarity=0.043 Sum_probs=36.4
Q ss_pred ccchhHHHHHHHHHhcC---CccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQG---FVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~G---~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+.-+..||.+....| .+|+.+|++.+++++.-+...|+.|.+.
T Consensus 66 glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 113 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK 113 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 45666777888877654 3999999999999999888888888753
No 164
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=51.37 E-value=29 Score=28.01 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHhhccccC-CCeEEEEeC-CEEEEEecCcccchhH--HHHHHHH---HhcCCccHHHHHH----------
Q 027597 137 AVSEDDCLRAISKLKVLG-NGYEVISVG-KKKLVRSVPTELNKDH--NQILELA---QAQGFVTVDEVER---------- 199 (221)
Q Consensus 137 ~IS~~DI~rAi~~L~~LG-~g~~vi~i~-~~~~v~Svp~Els~D~--~~vlel~---~~~G~vt~~~L~~---------- 199 (221)
.+|+.|....-+....|- .||++-.+| +...|++||.-+.... ..+-+++ ...|..+...+.+
T Consensus 66 ~ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~~~~v~~vP~~l~~~~~~~~l~ell~~l~~~~~~~~~~~~~~~~~~~ACr~ 145 (197)
T 3kdg_A 66 HYSTNEALIIEQHKQELESVGVFLESFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKNIDIKKLREEAAIMMSCKG 145 (197)
T ss_dssp ECCTTHHHHHHHTHHHHHHTTCCCEECSTTEEEEEEEETTSCTTCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHHHHHhCCCEEEECCCCEEEEEecCcccccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhHh
Confidence 567777655444433322 357777777 6777899998665432 2233333 3334444433221
Q ss_pred ----hcCCCHHHHHHHHHHHHH
Q 027597 200 ----RLSWTSGRAIDALDILLE 217 (221)
Q Consensus 200 ----~l~W~~~Ra~~~L~~l~~ 217 (221)
+-.|+..-+++.|++|-+
T Consensus 146 AIk~g~~Ls~~Em~~Ll~~L~~ 167 (197)
T 3kdg_A 146 SIKANRHLRNDEIKALLDDLRS 167 (197)
T ss_dssp ----CCCCCHHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHc
Confidence 235788888888887743
No 165
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=51.27 E-value=26 Score=24.32 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 179 ~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
...||++. .|.+|+.+|++.+|.++.-+...|+.|.+
T Consensus 33 r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~ 69 (96)
T 1y0u_A 33 RRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp HHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45588877 47899999999999999999999988865
No 166
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=50.35 E-value=77 Score=23.67 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=17.9
Q ss_pred HHHHHHHH-hhcccccChhHHHHHHHHHHHcCCCC
Q 027597 45 QLEDFARK-HKNDIRKNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 45 ~L~~Fa~k-h~~eI~~dp~fR~~F~~mC~siGVDP 78 (221)
....|-.. +.+.|.. .+|..++..+|..|
T Consensus 30 ~f~~fd~~~~~G~i~~-----~e~~~~l~~~~~~~ 59 (193)
T 1bjf_A 30 WYKGFLRDCPSGHLSM-----EEFKKIYGNFFPYG 59 (193)
T ss_dssp HHHHHHHHSTTSEEEH-----HHHHHHHTTTSSSS
T ss_pred HHHHHHHHCCCCCcCH-----HHHHHHHHHhcCcC
Confidence 34455555 5666653 36778888887654
No 167
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=49.83 E-value=20 Score=26.89 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=14.5
Q ss_pred CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhc
Q 027597 116 GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKL 150 (221)
Q Consensus 116 Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L 150 (221)
|.|+..|+...+... | ..+|++++...++.+
T Consensus 124 G~Is~~El~~~l~~~-g---~~~~~~~~~~~~~~~ 154 (191)
T 1uhk_A 124 GAITLDEWKAYTKAA-G---IIQSSEDCEETFRVC 154 (191)
T ss_dssp SEECHHHHHHHHHHH-T---SCCSHHHHHHHHHHS
T ss_pred CcCcHHHHHHHHHHh-C---CCCCHHHHHHHHHHh
Confidence 555555555444332 1 224555554444444
No 168
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=49.61 E-value=49 Score=21.66 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=37.3
Q ss_pred cccchhHHHHHHHHHhc---CCccHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 027597 173 TELNKDHNQILELAQAQ---GFVTVDEVERRLSWTSGRAIDALDILLEVL 219 (221)
Q Consensus 173 ~Els~D~~~vlel~~~~---G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~ 219 (221)
..|+..+..|+.+.-.. ...|..++++.+|.+...++.-+...++.|
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKL 58 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46888888898887641 348999999999999999998776666554
No 169
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=49.39 E-value=11 Score=29.78 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=26.9
Q ss_pred CCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 190 GFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 190 G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
-+||++.|++.|+.+-..|+.+|++|..+
T Consensus 62 KlITpsvlseRlkI~gSLARkaLreL~~k 90 (143)
T 2xzm_8 62 KVLTVSTVVEKLKVNGSLARQLMRTMADR 90 (143)
T ss_dssp SEECHHHHHHHHCBCHHHHHHHHHHHHHT
T ss_pred eeecHHHHHHHhcchHHHHHHHHHHHHHC
Confidence 57999999999999999999999999764
No 170
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=48.32 E-value=65 Score=24.62 Aligned_cols=30 Identities=7% Similarity=0.151 Sum_probs=18.6
Q ss_pred HHHHHHHHHHH-hhcccccChhHHHHHHHHHHHcCC
Q 027597 42 FRSQLEDFARK-HKNDIRKNPTFRSQFHEMCAKVGV 76 (221)
Q Consensus 42 F~~~L~~Fa~k-h~~eI~~dp~fR~~F~~mC~siGV 76 (221)
++.....|-.. +.+.|..+ .|..++..+|.
T Consensus 24 l~~~f~~~D~~~~~G~i~~~-----e~~~~l~~~~~ 54 (204)
T 1jba_A 24 LQEWYKKFLEECPSGTLFMH-----EFKRFFKVPDN 54 (204)
T ss_dssp HHHHHHHHHSSSTTCCEEHH-----HHHHHHHCCSS
T ss_pred HHHHHHHHHhhCCCCCcCHH-----HHHHHHHHhcC
Confidence 34444556555 55666543 57788888887
No 171
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=48.16 E-value=37 Score=24.81 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=34.3
Q ss_pred ccchhHHHHHHHH----HhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELA----QAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~----~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.++.-+..+|... +..+.+|..+|++.+|+++.-+..+|+.|.++
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 4565565565544 33678999999999999999999999988753
No 172
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=47.91 E-value=33 Score=24.32 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=30.9
Q ss_pred HHHHHHHHhcC-CccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 180 NQILELAQAQG-FVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 180 ~~vlel~~~~G-~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
..|+......| .+|+.+|++.+|-++.=+..+|..|..+
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~ 60 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34665553345 7999999999999999999999888754
No 173
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=47.66 E-value=15 Score=25.64 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=38.4
Q ss_pred HHHHHHhhhhcccC-CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccC
Q 027597 101 VQIVEICLATRPHN-GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG 154 (221)
Q Consensus 101 vqIvevC~~tr~~n-GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG 154 (221)
.+|.+++......+ ||-.+..|+...+. ||+.=|-+-++.|+.-|
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lg---------vS~~TVrr~L~~Le~kG 52 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAG---------LSIYQVRLYLEQLHDVG 52 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHT---------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHC---------CCHHHHHHHHHHHHHCC
Confidence 46888888877775 99999999999886 79888999999998755
No 174
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=47.06 E-value=45 Score=22.96 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=32.8
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVL 219 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~ 219 (221)
.|+..+..|+.+.-..| .|..++++.+|.+...++.-+....+.|
T Consensus 37 ~L~~~~r~vl~l~~~~g-~s~~eIA~~lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-WSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-CCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 46677777887765545 5999999999999877776665555444
No 175
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=46.48 E-value=56 Score=21.04 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=38.5
Q ss_pred ccchhHHHHHHHHHh---cCCccHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 027597 174 ELNKDHNQILELAQA---QGFVTVDEVERRLSWTSGRAIDALDILLEVLQ 220 (221)
Q Consensus 174 Els~D~~~vlel~~~---~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~~ 220 (221)
.|+..+..|+.+.-. ....|..++++.+|.+...++.-+...++.|.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 578888888888762 24589999999999999999999888877653
No 176
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=45.81 E-value=79 Score=23.15 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecCcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHH
Q 027597 137 AVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILL 216 (221)
Q Consensus 137 ~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (221)
..+++++....+.++.|+++. ...||.+... |..|+.+|++.+|.++.-+...|..|.
T Consensus 27 ~~~~~~~~~~~~~~kaL~~~~---------------------rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le 84 (122)
T 1r1t_A 27 AIAPEVAQSLAEFFAVLADPN---------------------RLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLR 84 (122)
T ss_dssp CCCHHHHHHHHHHHHHHCCHH---------------------HHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHhCCHH---------------------HHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467888888888888876331 3446766654 779999999999999998888888776
Q ss_pred H
Q 027597 217 E 217 (221)
Q Consensus 217 ~ 217 (221)
+
T Consensus 85 ~ 85 (122)
T 1r1t_A 85 N 85 (122)
T ss_dssp H
T ss_pred H
Confidence 5
No 177
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=45.39 E-value=56 Score=20.68 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=35.2
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVL 219 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~ 219 (221)
.|+..+..++.+.-..| .|..++++.+|.+...++..+....+.|
T Consensus 15 ~L~~~~r~il~l~~~~g-~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-LSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-CCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 46777778887765544 7999999999999988888777766654
No 178
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=45.33 E-value=38 Score=22.84 Aligned_cols=35 Identities=14% Similarity=0.344 Sum_probs=30.3
Q ss_pred HHHHHHh-cCCccHHHHHHhcCCCHHHHHHHHHHHH
Q 027597 182 ILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILL 216 (221)
Q Consensus 182 vlel~~~-~G~vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (221)
+|+.... .|++.++..++.||-+++-.-.+|..|-
T Consensus 15 lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe 50 (59)
T 2xvc_A 15 LLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALK 50 (59)
T ss_dssp HHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7776665 7999999999999999999999988774
No 179
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=45.27 E-value=35 Score=25.66 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=33.3
Q ss_pred ccchhHHHHHHHHHh-----cCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQA-----QGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~-----~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+.-|-.+|..... .|-+|+.+|++.++.++.-.-.+|+.|.+.
T Consensus 30 gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~ 79 (148)
T 4fx0_A 30 GLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRD 79 (148)
T ss_dssp TCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 456667778776654 245999999999999999999999988653
No 180
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=45.25 E-value=30 Score=23.93 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=30.6
Q ss_pred HHHHHHHhcC-CccHHHHHHhcCCCHHH-HHHHHHHHHHH
Q 027597 181 QILELAQAQG-FVTVDEVERRLSWTSGR-AIDALDILLEV 218 (221)
Q Consensus 181 ~vlel~~~~G-~vt~~~L~~~l~W~~~R-a~~~L~~l~~~ 218 (221)
.+|.+....| .+|+.+|++.++.++.- +...|+.|.+.
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 3455555566 79999999999999999 88888888753
No 181
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=44.94 E-value=75 Score=24.18 Aligned_cols=40 Identities=8% Similarity=0.014 Sum_probs=25.4
Q ss_pred hhhcccCC-CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 027597 108 LATRPHNG-GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (221)
Q Consensus 108 ~~tr~~nG-Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~ 157 (221)
...-+.|| |.|+..|.+..+.+. +.+.++.+.+-.=|.|+
T Consensus 135 ~~~~D~d~dg~i~~~eF~~~~~~~----------~~~~~~F~~~D~d~dG~ 175 (191)
T 1y1x_A 135 MRKFDRQRRGSLGFDDYVELSIFV----------CRVRNVFAFYDRERTGQ 175 (191)
T ss_dssp HHHHCTTCSSSBCHHHHHHHHHHH----------HHHHHHHHHHCTTCCSE
T ss_pred HHHhCCCCCCeEeHHHHHHHHHHH----------HHHHHHHHHhCcCCCce
Confidence 33334443 788888888777642 56666777766666666
No 182
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=44.88 E-value=13 Score=28.05 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=29.3
Q ss_pred HHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 186 AQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 186 ~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
+...-+||+..|++.|+.+-..|+.+|++|..+
T Consensus 55 Vpk~KlITpsvlseRlkI~gSLAR~aLreL~~k 87 (108)
T 3iz6_V 55 VPKYKQITPSVLSERLRINGSLARQAIKDLESR 87 (108)
T ss_dssp HHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCeEEeHHHHHhhhcccHHHHHHHHHHHHHC
Confidence 334679999999999999999999999999864
No 183
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=44.82 E-value=92 Score=22.99 Aligned_cols=95 Identities=15% Similarity=0.244 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHH
Q 027597 27 VAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEI 106 (221)
Q Consensus 27 l~~~~~~~l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvev 106 (221)
+....+..+-.++..++.....|-..+.+.|..+ .|+.++..+|..|- + +....++..
T Consensus 64 i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~--------------~---~~~~~~~~~ 121 (173)
T 1alv_A 64 LGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSS-----ELPGAFEAAGFHLN--------------E---HLYSMIIRR 121 (173)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHCTTCCSSBCTT-----THHHHHHHHTCCCC--------------H---HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH-----HHHHHHHHcCCCCC--------------H---HHHHHHHHH
Confidence 3334444444445555556666666666666655 24455555564321 1 122223332
Q ss_pred hhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 027597 107 CLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (221)
Q Consensus 107 C~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~ 157 (221)
+ ..+.|-|+..|.+..+.+. +++..|.+.+-+=|+|+
T Consensus 122 ~----dd~dg~i~~~eF~~~~~~~----------~~~~~~F~~~D~d~~G~ 158 (173)
T 1alv_A 122 Y----SDEGGNMDFDNFISCLVRL----------DAMFRAFKSLDKDGTGQ 158 (173)
T ss_dssp H----TCSSSCBCHHHHHHHHHHH----------HHHHHHHHHHSSSCCSE
T ss_pred h----cCCCCcCcHHHHHHHHHHH----------HHHHHHHHHhCCCCCCe
Confidence 2 3334788999988777652 67777777777777775
No 184
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=44.73 E-value=12 Score=28.08 Aligned_cols=90 Identities=14% Similarity=0.261 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccC
Q 027597 35 MKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHN 114 (221)
Q Consensus 35 l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~n 114 (221)
+..+.+.++.....|-.++.+-|..+ .|+.++.++|..+-. +-...++. ..+.|
T Consensus 45 l~~~~~~l~~~F~~~D~d~~G~I~~~-----el~~~l~~~g~~~~~-----------------~e~~~l~~----~~D~d 98 (150)
T 2jjz_A 45 LPEKLTAFKEKYMEFDLNNEGEIDLM-----SLKRMMEKLGVPKTH-----------------LEMKKMIS----EVTGG 98 (150)
T ss_dssp HHHHHHHHHHHHTTSCCCTTSSBCHH-----HHHHHHHHTTCCCCH-----------------HHHHHHHH----HHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCcCcCCHH-----HHHHHHHHcCCCCCH-----------------HHHHHHHH----HHCCC
Confidence 35556666666666666666666543 566777777754210 11112222 22333
Q ss_pred -CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEE
Q 027597 115 -GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEV 159 (221)
Q Consensus 115 -GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~v 159 (221)
.|-|+..|.+..+.+. .+++.+|.+.+..=|+|..-
T Consensus 99 ~dg~I~~~eF~~~~~~~---------~~~i~~aF~~~D~d~~G~~~ 135 (150)
T 2jjz_A 99 VSDTISYRDFVNMMLGK---------RSAVLKLVMMFEGKANESSP 135 (150)
T ss_dssp SCSSBCHHHHHHHHHSS---------SCCHHHHHHC----------
T ss_pred CCCcEeHHHHHHHHHHh---------HHHHHHHHHHHcCCCCCCCC
Confidence 4899999999888753 45689999999888888843
No 185
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=44.22 E-value=14 Score=26.54 Aligned_cols=89 Identities=15% Similarity=0.300 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhc-ccC-CCcccH
Q 027597 43 RSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATR-PHN-GGLINL 120 (221)
Q Consensus 43 ~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr-~~n-GGli~l 120 (221)
+.....|-..+.+.|..+ .|..++.++|+.|-.. ++-.+. ..- +.| .|.|+.
T Consensus 7 ~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~~~--------------------~~~~l~-~~~~D~~~~g~i~~ 60 (148)
T 1m45_A 7 KDIFTLFDKKGQGAIAKD-----SLGDYLRAIGYNPTNQ--------------------LVQDII-NADSSLRDASSLTL 60 (148)
T ss_dssp TTCHHHHCTTCCSEEEGG-----GHHHHHHHTTCCCCHH--------------------HHHHHH-HC--CC--CCEEEH
T ss_pred HHHHHHHCCCCCCCCCHH-----HHHHHHHHhCCCCCHH--------------------HHHHHH-HHhhCCCCCCeEcH
Confidence 334445555666667654 4667777888765310 111111 122 333 478888
Q ss_pred HHHHHHHHhhcCC--CCCCCCHHHHHHHHhhccccCCCe
Q 027597 121 QELCNLLRQRRKS--NREAVSEDDCLRAISKLKVLGNGY 157 (221)
Q Consensus 121 ~el~~~v~k~Rg~--~~~~IS~~DI~rAi~~L~~LG~g~ 157 (221)
.|.+..+...... ....-+.+++..+.+.+-+=|+|+
T Consensus 61 ~eF~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~ 99 (148)
T 1m45_A 61 DQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGK 99 (148)
T ss_dssp HHHHHHHHHTHHHHHGGGCCCTHHHHHHHHTTCSSSSSE
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHhCCCCCCc
Confidence 8888777664100 001235566666666666655554
No 186
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=44.13 E-value=37 Score=23.47 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 179 ~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
...||.+... |.+|+.+|++.+|.++.-+..-|..|.+
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 25 RLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp HHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3457777766 8999999999999999988888887754
No 187
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=43.70 E-value=64 Score=21.84 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=39.9
Q ss_pred EecCcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 027597 169 RSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQ 220 (221)
Q Consensus 169 ~Svp~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~~ 220 (221)
......|+..+..|+.+. ..| .|..++++.+|.+..-++.-+..+.+.|.
T Consensus 16 ~~~~~~Lt~~e~~vl~l~-~~g-~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 16 ERDVNQLTPRERDILKLI-AQG-LPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp -CCGGGSCHHHHHHHHHH-TTT-CCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHccCCHHHHHHHHHH-HcC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 344457999999999985 445 69999999999999999888888777653
No 188
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=43.62 E-value=41 Score=23.05 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=33.7
Q ss_pred HHHHHHhhhhcccCCCc-ccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcccc
Q 027597 101 VQIVEICLATRPHNGGL-INLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVL 153 (221)
Q Consensus 101 vqIvevC~~tr~~nGGl-i~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~L 153 (221)
..|++......+.+|=+ .++.++...++ +++++|.++++.+..|
T Consensus 31 ~~Ia~~iI~~LD~~GYL~~~l~eia~~l~---------~~~~eve~vL~~lQ~~ 75 (76)
T 2k9l_A 31 QELALELLNYLNEKGFLSKSVEEISDVLR---------CSVEELEKVRQKVLRL 75 (76)
T ss_dssp HHHHHHHHHHCTTSSTTCCCHHHHHHHHT---------SCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHcC---------CCHHHHHHHHHHHhcC
Confidence 34556666667788766 77899988763 8999999999998765
No 189
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.47 E-value=66 Score=20.97 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=36.3
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQ 220 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~~ 220 (221)
.|+..+..|+.+. ....|..++++.+|.+..-++.-+....+-|.
T Consensus 16 ~L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4677788888885 34569999999999999999988888777654
No 190
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=43.41 E-value=29 Score=26.82 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=10.9
Q ss_pred CCCCHHHHHHHHhhc
Q 027597 136 EAVSEDDCLRAISKL 150 (221)
Q Consensus 136 ~~IS~~DI~rAi~~L 150 (221)
..||.+++.++++.+
T Consensus 143 G~Is~~El~~~l~~~ 157 (208)
T 2hpk_A 143 GTVDVDELKTMMKAF 157 (208)
T ss_dssp SSBCHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHh
Confidence 468888888777654
No 191
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=42.87 E-value=55 Score=23.86 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=36.8
Q ss_pred CcccchhHHHHHHHHHhcCCccHHHHHH-hcCCCHHHHHHHHHHHHH
Q 027597 172 PTELNKDHNQILELAQAQGFVTVDEVER-RLSWTSGRAIDALDILLE 217 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~G~vt~~~L~~-~l~W~~~Ra~~~L~~l~~ 217 (221)
...|+.-|..+|-.....|++|+.+|++ .++-++.=.-..|+-|.+
T Consensus 11 ~~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r 57 (95)
T 1bja_A 11 NDVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIK 57 (95)
T ss_dssp TTSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888888998888889999999999 989888666666655543
No 192
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=42.69 E-value=66 Score=24.08 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=9.2
Q ss_pred cCCccHHHHHHh
Q 027597 189 QGFVTVDEVERR 200 (221)
Q Consensus 189 ~G~vt~~~L~~~ 200 (221)
-|+||.+++...
T Consensus 157 dG~i~~~Ef~~~ 168 (191)
T 2ccm_A 157 KTMVTREIFARL 168 (191)
T ss_dssp TSCCBHHHHHHH
T ss_pred CCCcCHHHHHHH
Confidence 588999888754
No 193
>4fmr_A Uncharacterized hypothetical protein; bacterial DNA binding protein, DUF4469 with IG-like fold, ST genomics; HET: MSE; 2.25A {Bacteroides vulgatus}
Probab=42.64 E-value=39 Score=29.08 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=39.9
Q ss_pred cCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc-----ccCCCeEEEEeC-CEEEEE
Q 027597 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK-----VLGNGYEVISVG-KKKLVR 169 (221)
Q Consensus 113 ~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~-----~LG~g~~vi~i~-~~~~v~ 169 (221)
..-|-++++++++++.+.+. .+++.||..+++.|. -|-.|+.| .+| .+..++
T Consensus 28 ~~~gs~t~~dIa~~ia~~~S----~ls~~di~~vl~~l~~~~~e~L~~G~sV-n~G~~~~s~~ 85 (265)
T 4fmr_A 28 ETTRSIDKEIILDRMVAKNP----GVRRETMALGIELMEEVVAEALMNGESV-NTGLFRGVAQ 85 (265)
T ss_dssp CCCCEECHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHHHHHHTTTCEE-ECSSEEEEEE
T ss_pred EEecccCHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHhCCCEE-EcCCEEEEEE
Confidence 45679999999999988754 389999999999886 37788887 355 344443
No 194
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=42.08 E-value=42 Score=23.57 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHhhhhcccCCCcc-cHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecC
Q 027597 94 DFYYELGVQIVEICLATRPHNGGLI-NLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVP 172 (221)
Q Consensus 94 dfy~eLavqIvevC~~tr~~nGGli-~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp 172 (221)
..|..++..|.+-.....-..|..+ +..+|...++ ||..=|.+|++.|+..| +-...-|+-.+|...+
T Consensus 11 ~~~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~---------vSr~tvr~al~~L~~~G--li~~~~g~G~~v~~~~ 79 (102)
T 1v4r_A 11 KGYADVATHFRTLIKSGELAPGDTLPSVADIRAQFG---------VAAKTVSRALAVLKSEG--LVSSRGALGTVVEKNP 79 (102)
T ss_dssp CCHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSS---------SCTTHHHHHTTTTTTSS--CCEEETTTEEESCSCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHC---------cCHHHHHHHHHHHHHCC--CEEEeCCCeEEEccCC
Confidence 5677777777776666555667777 8999988765 89999999999999766 4222223455665544
Q ss_pred cccc
Q 027597 173 TELN 176 (221)
Q Consensus 173 ~Els 176 (221)
.+.+
T Consensus 80 ~~~~ 83 (102)
T 1v4r_A 80 IVIT 83 (102)
T ss_dssp CCCS
T ss_pred cccc
Confidence 4444
No 195
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=41.87 E-value=23 Score=25.44 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=32.4
Q ss_pred cchHHH--HHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHh
Q 027597 93 GDFYYE--LGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAIS 148 (221)
Q Consensus 93 gdfy~e--LavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~ 148 (221)
||||-+ =++.-+|-.+.-.+.+ ++...++.+... +..-.-+|++||..|+.
T Consensus 37 GDFf~~p~~~i~~le~~L~G~~~~----~i~~~l~~~~~~-~~~~~g~~~edi~~ai~ 89 (91)
T 3r07_C 37 GDFFMFPEDSINRLEDMLRGSSIE----KINDIIRDFYNQ-GVITPGVEPEDFIQALR 89 (91)
T ss_dssp EEBCCBSTTHHHHHHHHHTTSBTT----SHHHHHHHHHTT-TCBCTTCCTTHHHHHHC
T ss_pred cccCCCcchhHHHHHHHHCCCCHH----HHHHHHHhhhcc-CceEcCCCHHHHHHHHh
Confidence 799954 3456666666655555 566666555332 22224699999999984
No 196
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=41.85 E-value=99 Score=24.41 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCC
Q 027597 40 ATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 40 ~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDP 78 (221)
..++.....|-.++.+.|..+ .|..++.++|..|
T Consensus 51 ~~l~~~F~~~D~d~~G~I~~~-----El~~~l~~~g~~~ 84 (220)
T 3sjs_A 51 TRIYQWFMGVDRDRSGTLEIN-----ELMMGQFPGGIRL 84 (220)
T ss_dssp HHHHHHHHHHCTTCCSSBCHH-----HHHHCCBGGGBCC
T ss_pred HHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHcCCCC
Confidence 333445555666666666554 4666666777553
No 197
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=41.80 E-value=37 Score=25.41 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=29.4
Q ss_pred HHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 183 LELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 183 lel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
+.+....|.+|+.+|++.+|.++.-+..+|+.|.++
T Consensus 46 ~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 46 SDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp HHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 334445688999999999999999999999888654
No 198
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=41.18 E-value=27 Score=29.38 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHH
Q 027597 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDIL 215 (221)
Q Consensus 181 ~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l 215 (221)
.+|.+.....-+|.+.|++.+||+.+.++.+|++|
T Consensus 26 ~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l 60 (220)
T 3f2g_A 26 PLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQA 60 (220)
T ss_dssp HHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhC
Confidence 45655555456999999999999999999999876
No 199
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=40.94 E-value=66 Score=23.86 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=35.0
Q ss_pred ccchhHHHHHHHHHh-----cCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQA-----QGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~-----~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|+..+..||-.... ..+.|.++|++.+|.+..-+..+|+.|.+.
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~k 78 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQK 78 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 566666666544321 356999999999999999999999999863
No 200
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=40.93 E-value=79 Score=21.52 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=37.3
Q ss_pred ccchhHHHHHHHHHhc---CCccHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 027597 174 ELNKDHNQILELAQAQ---GFVTVDEVERRLSWTSGRAIDALDILLEVLQ 220 (221)
Q Consensus 174 Els~D~~~vlel~~~~---G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~~ 220 (221)
.|+..+..|+.+.-.. ...|..++++.+|.+..+++.-+...++-|.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4677788888876542 3589999999999999999998887776653
No 201
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=40.87 E-value=32 Score=25.91 Aligned_cols=29 Identities=28% Similarity=0.185 Sum_probs=26.9
Q ss_pred cCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 189 QGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 189 ~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.-+||+..|++.|+.+-..|+.+|++|..
T Consensus 57 ~KlITpsvlseRlkI~gSLAR~aLreL~~ 85 (108)
T 3u5c_Z 57 YRYVSVSVLVDRLKIGGSLARIALRHLEK 85 (108)
T ss_dssp CSSBSHHHHHHTTCCCTTHHHHHHHHHSS
T ss_pred CeEEeHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 57899999999999999999999999864
No 202
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=40.81 E-value=60 Score=19.70 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 115 GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
.|.|+..|+...+.... ..++++++...++.+..=++|
T Consensus 15 ~G~i~~~el~~~l~~~~----~~~~~~~~~~~~~~~D~~~dg 52 (67)
T 1tiz_A 15 DGKLSLDEFREVALAFS----PYFTQEDIVKFFEEIDVDGNG 52 (67)
T ss_dssp SSCEEHHHHHHHHHHTC----TTSCHHHHHHHHHHHCCSSSS
T ss_pred CCcCcHHHHHHHHHHhC----CCCCHHHHHHHHHHHCCCCCC
Confidence 47777777777666532 346777766666655443333
No 203
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=40.65 E-value=39 Score=28.72 Aligned_cols=49 Identities=10% Similarity=0.215 Sum_probs=38.1
Q ss_pred CCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecCcccchhHHHHHHHHHhcC
Q 027597 138 VSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQG 190 (221)
Q Consensus 138 IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp~Els~D~~~vlel~~~~G 190 (221)
.|.++++++++.++....|+.+ +..+|.-.|.|-..|...+++++...+
T Consensus 136 ~t~e~~~~~i~~l~~~~~gi~i----~~~~IvG~PgEt~ed~~~t~~~l~~l~ 184 (304)
T 2qgq_A 136 KSSEELKKMLSSIRERFPDAVL----RTSIIVGFPGETEEDFEELKQFVEEIQ 184 (304)
T ss_dssp SCHHHHHHHHHHHHHHCTTCEE----EEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhCCCCEE----EEEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 5899999999999886566654 234565689998888888999988654
No 204
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=40.57 E-value=80 Score=29.06 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDP 78 (221)
+.+.++..+..|-..+.+.|..+ +|+.++.++|.+|
T Consensus 310 ei~el~~~F~~fD~D~dG~Is~~-----EL~~~L~~lg~~~ 345 (450)
T 3sg6_A 310 QIAEFKEAFSLFDKDGDGTITTK-----ELGTVMRSLGQNP 345 (450)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHH-----HHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHhCCCC
Confidence 44566677777777777777754 5667777788764
No 205
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=40.06 E-value=46 Score=23.30 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 179 ~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
...+.+++-..+..|++.|+..|..-=.||-..++.|=.
T Consensus 12 y~~A~~~V~~~~~aS~S~lQR~lrIGYnRAArlid~lE~ 50 (73)
T 2ve8_A 12 YDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEM 50 (73)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHccChHHHHHHHHHHHH
Confidence 345677777789999999999999999999999998844
No 206
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=39.80 E-value=34 Score=30.48 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=41.0
Q ss_pred CcccchhHHHHHHHHHhc--CCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 172 PTELNKDHNQILELAQAQ--GFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~--G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
+..|+..|-.||...... |-+|..+|++.+++++...-.+|+.|.+
T Consensus 399 ~~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~ 446 (487)
T 1hsj_A 399 KFNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKD 446 (487)
T ss_dssp SCCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456888898899888877 8899999999999999999999998865
No 207
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=39.66 E-value=76 Score=22.68 Aligned_cols=42 Identities=19% Similarity=0.093 Sum_probs=31.0
Q ss_pred CcccHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCCCe
Q 027597 116 GLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNGY 157 (221)
Q Consensus 116 Gli~l~el~~~v~k~Rg~-~~~~IS~~DI~rAi~~L~~LG~g~ 157 (221)
|.|+..||...+.+.-+. ....+|+++|..-++.+-.=|+|.
T Consensus 27 G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~ 69 (101)
T 3nso_A 27 YKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCE 69 (101)
T ss_dssp TEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSC
T ss_pred CEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCC
Confidence 899999999888763221 125688998888888887767664
No 208
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=39.02 E-value=26 Score=27.69 Aligned_cols=38 Identities=11% Similarity=0.233 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH-cCCCCC
Q 027597 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAK-VGVDPL 79 (221)
Q Consensus 37 ~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~s-iGVDPL 79 (221)
.++..++..+..|-..+.+.|..+ .|...+.+ +|.+|.
T Consensus 45 ~~~~~l~~~F~~~D~d~dG~I~~~-----El~~~l~~~lg~~~~ 83 (219)
T 3cs1_A 45 EAKQRRIELFKKFDKNETGKLCYD-----EVYSGCLEVLKLDEF 83 (219)
T ss_dssp HHHHHHHHHHHHHCTTCSSCBCHH-----HHHHHHHHTTCGGGT
T ss_pred HHHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHHhCCCcc
Confidence 345666777777777777777644 46666766 788764
No 209
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=38.94 E-value=28 Score=26.51 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCC
Q 027597 36 KEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 36 ~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDP 78 (221)
..++..++.....|-..+.+.|..+ .|+..+.++|+.|
T Consensus 33 ~~~~~~l~~~F~~~D~d~~G~i~~~-----e~~~~l~~~~~~~ 70 (204)
T 3e3r_A 33 ASGIQGLARFFRQLDRDGSRSLDAD-----EFRQGLAKLGLVL 70 (204)
T ss_dssp -------CHHHHHHCTTCCSSBCHH-----HHHHHHHTTTCCC
T ss_pred chhHHHHHHHHHHHccCCCCCcCHH-----HHHHHHHHcCCCC
Confidence 3455566666677766777777654 5777778888764
No 210
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=38.85 E-value=61 Score=22.54 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=23.8
Q ss_pred CcccHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCCC
Q 027597 116 GLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 116 Gli~l~el~~~v~k~Rg~-~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
|.|+..||...+.+.-|. ....+|+++|.+-++.+-.=|+|
T Consensus 27 G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG 68 (93)
T 4eto_A 27 FKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDN 68 (93)
T ss_dssp TSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSS
T ss_pred CeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCC
Confidence 788888887777652221 11345777777777666554544
No 211
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=38.71 E-value=51 Score=28.92 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 179 ~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
...||++....|.+|..+|++.+|.++.=+...+++|+++
T Consensus 18 ~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp HHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4569999999999999999999999999999999999874
No 212
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=38.70 E-value=59 Score=23.70 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILL 216 (221)
Q Consensus 179 ~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (221)
...||.+....|..|+.+|++.+|.++.-+..-|..|.
T Consensus 44 rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~ 81 (122)
T 1u2w_A 44 RAKITYALCQDEELCVCDIANILGVTIANASHHLRTLY 81 (122)
T ss_dssp HHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33577776656889999999999999988888888776
No 213
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=38.63 E-value=1.1e+02 Score=22.20 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEe-C--CEEEEEecCcc
Q 027597 98 ELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISV-G--KKKLVRSVPTE 174 (221)
Q Consensus 98 eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i-~--~~~~v~Svp~E 174 (221)
+.|.+|+..+.... .|+.++..|+-..++ |++.-+.+.++.|+..| | |... | |.+.+---|.+
T Consensus 9 ~~al~iL~~la~~~--~~~~~s~~ela~~~~---------i~~~~v~~il~~L~~~G--l-v~~~~g~~ggy~L~~~~~~ 74 (129)
T 2y75_A 9 RYGLTIMIELAKKH--GEGPTSLKSIAQTNN---------LSEHYLEQLVSPLRNAG--L-VKSIRGAYGGYVLGSEPDA 74 (129)
T ss_dssp HHHHHHHHHHHHTT--TSCCBCHHHHHHHTT---------SCHHHHHHHHHHHHHTT--S-EEEC----CCEEESSCGGG
T ss_pred HHHHHHHHHHHhCC--CCCcCCHHHHHHHHC---------cCHHHHHHHHHHHHHCC--c-eEecCCCCCceEeCCCHHH
Confidence 44667776554322 577889999987754 89999999999999866 4 3333 2 33444445677
Q ss_pred cchhHHHHHHHHHh
Q 027597 175 LNKDHNQILELAQA 188 (221)
Q Consensus 175 ls~D~~~vlel~~~ 188 (221)
++.-. |++..+.
T Consensus 75 itl~d--i~~~~e~ 86 (129)
T 2y75_A 75 ITAGD--IIRVLEG 86 (129)
T ss_dssp CBHHH--HHHHHHC
T ss_pred CcHHH--HHHHHcC
Confidence 77444 7777664
No 214
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=38.30 E-value=1.4e+02 Score=23.31 Aligned_cols=107 Identities=13% Similarity=0.233 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcccccChhHHHHHHHHHHHcCCC-CC--CCCCCc---cccccCccchHHHHHHHHHHHhhhhcccCCC--
Q 027597 45 QLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVD-PL--ASNKGF---WAELLGIGDFYYELGVQIVEICLATRPHNGG-- 116 (221)
Q Consensus 45 ~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVD-PL--~s~k~~---ws~~lG~gdfy~eLavqIvevC~~tr~~nGG-- 116 (221)
.+.+|+.--+ + +..++.+.|+.++..+|.+ |. .....| +...||+++--.+.|..|++-+..+--..|=
T Consensus 71 ~l~di~~~~~--v-~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P 147 (200)
T 1ais_B 71 TLDEIADIAR--V-DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSP 147 (200)
T ss_dssp CHHHHHHHTT--S-CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCH
T ss_pred CHHHHHHHHC--C-CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCH
Confidence 4555554433 2 3457888899999999988 33 222222 3345788888889999999988875443331
Q ss_pred -cccHHHHH--HHHHhhcCCC-----CCCCCHHHHHHHHhhcc-ccC
Q 027597 117 -LINLQELC--NLLRQRRKSN-----REAVSEDDCLRAISKLK-VLG 154 (221)
Q Consensus 117 -li~l~el~--~~v~k~Rg~~-----~~~IS~~DI~rAi~~L~-~LG 154 (221)
.|.-.-|| +++...+-.. ...||+.+|.+..+.|. .||
T Consensus 148 ~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 148 AGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 12222222 3322211000 01467777777777774 344
No 215
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=38.26 E-value=1.3e+02 Score=22.74 Aligned_cols=31 Identities=10% Similarity=0.268 Sum_probs=19.6
Q ss_pred HHHHHHHHHH-hhcccccChhHHHHHHHHHHHcCCCC
Q 027597 43 RSQLEDFARK-HKNDIRKNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 43 ~~~L~~Fa~k-h~~eI~~dp~fR~~F~~mC~siGVDP 78 (221)
+.....|-.. +.+.|.. ..|..++.++|.+|
T Consensus 17 ~~~f~~fd~~~~~G~i~~-----~e~~~~l~~~~~~~ 48 (198)
T 2r2i_A 17 HQWYKKFMTECPSGQLTL-----YEFKQFFGLKNLSP 48 (198)
T ss_dssp HHHHHHHHHHCTTSEECH-----HHHHHHHTCCSCCH
T ss_pred HHHHHHHHHhCCCCcCCH-----HHHHHHHHHhCCCc
Confidence 3344556666 6677764 35778887787764
No 216
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=38.10 E-value=47 Score=22.00 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=16.6
Q ss_pred cccHHHHHHHHHhh----cCCCCCCCCHHHHHHHHhhcc
Q 027597 117 LINLQELCNLLRQR----RKSNREAVSEDDCLRAISKLK 151 (221)
Q Consensus 117 li~l~el~~~v~k~----Rg~~~~~IS~~DI~rAi~~L~ 151 (221)
.|+..|+...+... -| ..+|++++...++.+.
T Consensus 27 ~I~~~el~~~l~~~~~~~~g---~~~~~~~~~~~~~~~D 62 (93)
T 1k2h_A 27 KLSKKELKDLLQTELSSFLD---VQKDADAVDKIMKELD 62 (93)
T ss_dssp SCCHHHHHHHHHHHTHHHHH---CCCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHhC
Confidence 67776666665541 11 2355555555544443
No 217
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=37.92 E-value=15 Score=30.94 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=18.7
Q ss_pred ccccChhHHHHHHHHHHHcCCCC
Q 027597 56 DIRKNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 56 eI~~dp~fR~~F~~mC~siGVDP 78 (221)
.|-+||++ |++++..+||.|
T Consensus 10 pLESnP~V---ft~l~~~LGv~~ 29 (228)
T 4dm9_A 10 PMEINPEM---LNKVLSRLGVAG 29 (228)
T ss_dssp CCCCSHHH---HHHHHHHTTBCS
T ss_pred eccCCHHH---HHHHHHHcCCCC
Confidence 57899999 999999999998
No 218
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=37.71 E-value=72 Score=22.25 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=38.0
Q ss_pred cccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 027597 173 TELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQ 220 (221)
Q Consensus 173 ~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~~ 220 (221)
..|+..+..|+.+. ..| .|..++++.+|.+..-++.-+..+.+.|.
T Consensus 26 ~~Lt~~e~~vl~l~-~~g-~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SEG-LTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHH-HTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHH-HcC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 46888899999997 434 79999999999999999988888877664
No 219
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=37.67 E-value=77 Score=23.06 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHhhc
Q 027597 136 EAVSEDDCLRAISKL 150 (221)
Q Consensus 136 ~~IS~~DI~rAi~~L 150 (221)
..||++||..|++.+
T Consensus 80 ktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 80 KTVTAMDVVYALKRQ 94 (103)
T ss_dssp SEECHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHc
Confidence 469999999999987
No 220
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=37.50 E-value=48 Score=27.76 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=38.3
Q ss_pred CcccchhHHHHHHHHHhcC--CccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 172 PTELNKDHNQILELAQAQG--FVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~G--~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
+..|+.-|-.||......| .+|+.+|++.+++++...-.+|+.|.+
T Consensus 153 ~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~ 200 (250)
T 1p4x_A 153 HLTLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKK 200 (250)
T ss_dssp HCSSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3456777888888877644 599999999999999999999998875
No 221
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=37.47 E-value=37 Score=26.33 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=41.6
Q ss_pred CCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEec-C-cccchh-H-HHHHHHHH--
Q 027597 114 NGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSV-P-TELNKD-H-NQILELAQ-- 187 (221)
Q Consensus 114 nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Sv-p-~Els~D-~-~~vlel~~-- 187 (221)
+.|.|+..|+...+.+. | ..++++++.+.++.+..=|+|. |.+.. ++..+ . .....+ . ..+.....
T Consensus 70 ~~G~Is~~El~~~l~~~-g---~~~~~~~~~~l~~~~D~d~~g~--I~~~E--F~~~~~~~~~~~~~~~l~~~F~~~D~d 141 (197)
T 3pm8_A 70 NSGTLSSQEILDGLKKI-G---YQKIPPDIHQVLRDIDSNASGQ--IHYTD--FLAATIDKQTYLKKEVCLIPFKFFDID 141 (197)
T ss_dssp CSSEECHHHHHHHHHHH-C-------CHHHHHHHHC-------C--EEHHH--HHHTTCCHHHHCSHHHHHHHHHHHCTT
T ss_pred CCCcCCHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCCCCCCe--EcHHH--HHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence 44777777777777654 2 2366677766666665544442 21110 00000 0 000001 1 11222222
Q ss_pred hcCCccHHHHHHhcCCC---HHHHHHHHHHHHHHh
Q 027597 188 AQGFVTVDEVERRLSWT---SGRAIDALDILLEVL 219 (221)
Q Consensus 188 ~~G~vt~~~L~~~l~W~---~~Ra~~~L~~l~~~~ 219 (221)
..|+||.++|..-+.-. ..-....++.|++++
T Consensus 142 ~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~ 176 (197)
T 3pm8_A 142 GNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEV 176 (197)
T ss_dssp CSSEECHHHHHHHHC----CCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence 25888888888766532 233445566666554
No 222
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=37.43 E-value=1.2e+02 Score=22.22 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCC
Q 027597 27 VAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGV 76 (221)
Q Consensus 27 l~~~~~~~l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGV 76 (221)
+...++..+-..+..++.....|-..+.+.|..+ .|+.++..+|.
T Consensus 61 i~~~ef~~~~~~~~~~~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~ 105 (172)
T 2znd_A 61 VNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKN-----ELKQALSGFGY 105 (172)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHCTTCSSEECHH-----HHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCccCHH-----HHHHHHHHcCC
Confidence 3333444444444455555555555555555433 45555555654
No 223
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=37.40 E-value=40 Score=23.17 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=25.0
Q ss_pred cchHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhc
Q 027597 93 GDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKL 150 (221)
Q Consensus 93 gdfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L 150 (221)
.+|...|+-+=.++|... + | ..|+.+||..|++.|
T Consensus 36 ~~Fi~~la~eA~~~a~~~------------------~-r----KTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 36 LLFLHRLAEEARTNAFEN------------------K-S----KIIKPEHTIAAAKVI 70 (76)
T ss_dssp HHHHHHHHHHHHHHHHHH------------------T-C----SSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc------------------C-C----CCCCHHHHHHHHHHH
Confidence 477777777777766441 1 2 359999999999876
No 224
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=37.29 E-value=17 Score=25.69 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.8
Q ss_pred cccChhHHHHHHHHHHHcCCCCC
Q 027597 57 IRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 57 I~~dp~fR~~F~~mC~siGVDPL 79 (221)
|+=|++...++.+.|..+|++|-
T Consensus 6 ~RiD~~lK~~a~~v~~~lGl~~s 28 (79)
T 4fxe_A 6 LRIDDELKARSYAALEKMGVTPS 28 (79)
T ss_dssp EECCHHHHHHHHHHHHHHTCCHH
T ss_pred EEcCHHHHHHHHHHHHHhCCCHH
Confidence 57799999999999999999964
No 225
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=36.95 E-value=37 Score=24.47 Aligned_cols=36 Identities=11% Similarity=0.046 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHH
Q 027597 178 DHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDI 214 (221)
Q Consensus 178 D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~ 214 (221)
-+..++++....| +|+.+|++.+|.+..-+..+|+.
T Consensus 8 R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 8 RTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHcC
Confidence 3566888888777 99999999999999888888764
No 226
>1iyr_A DFF45, DNA fragmentation factor alpha subunit; apoptosis, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; NMR {Homo sapiens} SCOP: a.164.1.1 PDB: 1koy_A*
Probab=36.89 E-value=39 Score=25.36 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=26.8
Q ss_pred HHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 027597 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVL 219 (221)
Q Consensus 182 vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~ 219 (221)
-||++.+. .++-|+..|+|+..|+.++....-+||
T Consensus 39 dLElV~ke---dpkALa~aL~Wd~~kt~avqqAC~qEL 73 (111)
T 1iyr_A 39 DLELVTKE---DPKALAVALNWDIKKTETVQEACEREL 73 (111)
T ss_dssp HHHHHHTS---CHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcc---CHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34554432 367788899999999999998888776
No 227
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=36.79 E-value=35 Score=25.62 Aligned_cols=13 Identities=15% Similarity=0.463 Sum_probs=8.4
Q ss_pred cCCccHHHHHHhc
Q 027597 189 QGFVTVDEVERRL 201 (221)
Q Consensus 189 ~G~vt~~~L~~~l 201 (221)
.|.||.++....+
T Consensus 157 dG~I~~~EF~~~~ 169 (183)
T 1dgu_A 157 DGTINLSEFQHVI 169 (183)
T ss_dssp SSEEEHHHHHHHH
T ss_pred CCeEcHHHHHHHH
Confidence 4677777776543
No 228
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=36.31 E-value=55 Score=23.50 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc---ccChhHHHHHHHHHHHcCCCC
Q 027597 32 TDLMKEQLATFRSQLEDFARKHKNDI---RKNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 32 ~~~l~~ql~~F~~~L~~Fa~kh~~eI---~~dp~fR~~F~~mC~siGVDP 78 (221)
+++|...++.|..-+++--.+...+. ..-.+=..+|.+|...-||||
T Consensus 26 le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~ 75 (86)
T 3nr7_A 26 LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDP 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 55666666666554444333322222 222233457999999999998
No 229
>2o34_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.95A {Desulfovibrio vulgaris} SCOP: d.96.2.2
Probab=36.14 E-value=58 Score=27.74 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--------ccccC-hhHHHHHHHHHHHcCCCCCCCCCCc
Q 027597 33 DLMKEQLATFRSQLEDFARKHKN--------DIRKN-PTFRSQFHEMCAKVGVDPLASNKGF 85 (221)
Q Consensus 33 ~~l~~ql~~F~~~L~~Fa~kh~~--------eI~~d-p~fR~~F~~mC~siGVDPL~s~k~~ 85 (221)
+.....+..|+..|++++.+|.. .+..| |.+-++--.-|...||||.+.-+|.
T Consensus 47 ~~~~~~~~~~r~~l~~~i~~~p~f~~sl~p~~~~~~ap~i~~~M~~A~~~~gv~PmaaVaG~ 108 (250)
T 2o34_A 47 TPMAAYVGELRAQLKVWMEFQPAFRHSLVPVEVPEGAPEVVRRMAHGARLVGVGPFAAVAGT 108 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTTTCSSCCCCCTTSCHHHHHHHHHHHHHTCCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChhhhccCCCCCCCCCCCHHHHHHHHHHHHhCCChHHHHHhH
Confidence 55667788899999999998876 22234 6664455556677999999875443
No 230
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=36.14 E-value=18 Score=30.61 Aligned_cols=20 Identities=20% Similarity=0.561 Sum_probs=18.7
Q ss_pred ccccChhHHHHHHHHHHHcCCCC
Q 027597 56 DIRKNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 56 eI~~dp~fR~~F~~mC~siGVDP 78 (221)
.|.+||++ |++++..+||.|
T Consensus 8 plESnP~V---ft~l~~~lGv~~ 27 (230)
T 1xd3_A 8 PLEANPEV---TNQFLKQLGLHP 27 (230)
T ss_dssp CCBCCHHH---HHHHHHHTTBCT
T ss_pred cccCCHHH---HHHHHHHcCCCc
Confidence 58899999 999999999998
No 231
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=36.08 E-value=2.4e+02 Score=25.28 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecCcccchhHHHHHHHHHhcCCccHHH
Q 027597 117 LINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDE 196 (221)
Q Consensus 117 li~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp~Els~D~~~vlel~~~~G~vt~~~ 196 (221)
-|+++++-..++ +|++++++-+-.+=..|.=.-.|.-....+.-.-|..-+.-+..+++.++..+.+--..
T Consensus 316 rIsl~~iA~~l~---------ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L 386 (394)
T 3txn_A 316 RVQVAHVAESIQ---------LPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTL 386 (394)
T ss_dssp EEEHHHHHHHHT---------CCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC------------------------
T ss_pred eeeHHHHHHHHC---------cCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 388998887775 79999998888876655333333333222332345445555666777777655544333
No 232
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*
Probab=35.55 E-value=1e+02 Score=21.91 Aligned_cols=77 Identities=10% Similarity=0.233 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-Hhhc-ccccChhHHHHHHHHHH-HcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhh
Q 027597 33 DLMKEQLATFRSQLEDFAR-KHKN-DIRKNPTFRSQFHEMCA-KVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLA 109 (221)
Q Consensus 33 ~~l~~ql~~F~~~L~~Fa~-kh~~-eI~~dp~fR~~F~~mC~-siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~ 109 (221)
..|..++..++..+..|.. +..+ .|..+ .|+.++. .+|.. +... .+....++-...
T Consensus 5 ~~l~~~~~~l~~~F~~fD~~dgdG~~Is~~-----El~~~l~~~lg~~-~~~~---------------~~~~~~v~~l~~ 63 (113)
T 1xk4_C 5 SQLERNIETIINTFHQYSVKLGHPDTLNQG-----EFKELVRKDLQNF-LKKE---------------NKNEKVIEHIME 63 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSSSTTSBCHH-----HHHHHHHHHTTTT-TTTG---------------GGCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCEECHH-----HHHHHHHHHhhhh-hccc---------------ccCHHHHHHHHH
Confidence 3567778889999999995 7766 77765 4556666 66631 0000 001111222223
Q ss_pred hcccCC-CcccHHHHHHHHHhh
Q 027597 110 TRPHNG-GLINLQELCNLLRQR 130 (221)
Q Consensus 110 tr~~nG-Gli~l~el~~~v~k~ 130 (221)
..+.|| |.|+..|.+..+.+.
T Consensus 64 ~~D~d~dG~I~f~EF~~~~~~~ 85 (113)
T 1xk4_C 64 DLDTNADKQLSFEEFIMLMARL 85 (113)
T ss_dssp HHCTTCSSSBCHHHHHHHHHHH
T ss_pred HhCCCCCCCEeHHHHHHHHHHH
Confidence 334444 889999988777653
No 233
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=35.31 E-value=75 Score=23.05 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=33.9
Q ss_pred cchhHHHHHHHHHh------cCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELAQA------QGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 175 ls~D~~~vlel~~~------~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
|+.-+-.+|..... .|.++..+|++.++|+.......|..|.+
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~ 62 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQA 62 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHH
Confidence 66666667663322 27789999999999999999999988865
No 234
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=35.15 E-value=18 Score=30.56 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.3
Q ss_pred ccccChhHHHHHHHHHHHcCCCCC
Q 027597 56 DIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 56 eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
.|.+||++ |++++..+||.|+
T Consensus 9 plESnP~V---ft~l~~~lGv~~~ 29 (232)
T 2wdt_A 9 PLESNPDS---LYLYSCKLGQSKL 29 (232)
T ss_dssp CCBCCHHH---HHHHHHHHTCCSE
T ss_pred eecCCHHH---HHHHHHHhCCCCe
Confidence 58899999 9999999999984
No 235
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=34.91 E-value=16 Score=30.95 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.1
Q ss_pred ccccChhHHHHHHHHHHHcCCCCC
Q 027597 56 DIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 56 eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
.|.+||++ |.+++..+||.++
T Consensus 15 pLESnP~V---ft~l~~~LGv~~~ 35 (233)
T 3rii_A 15 LMESDPGV---FTELIKGFGCRGA 35 (233)
T ss_dssp CCCCCHHH---HHHHHHHTTCBSE
T ss_pred eecCCHHH---HHHHHHHhCCCCc
Confidence 68899999 9999999999864
No 236
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=34.64 E-value=86 Score=22.66 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCC
Q 027597 39 LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 39 l~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
+..++.....|-..+.+.|..+ .|..++..+|..|.
T Consensus 26 ~~~l~~~F~~~D~~~~G~i~~~-----e~~~~l~~~~~~~~ 61 (166)
T 2aao_A 26 IAGLKEMFNMIDADKSGQITFE-----ELKAGLKRVGANLK 61 (166)
T ss_dssp HHHHHHHHHHHCTTCCSSBCHH-----HHHHHGGGGTCCCC
T ss_pred HHHHHHHHHHhCCCCCCeEeHH-----HHHHHHHHhCCCCC
Confidence 4445555566666666666643 57788888887653
No 237
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=34.60 E-value=31 Score=24.48 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=30.4
Q ss_pred cccCCCcccHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCCC
Q 027597 111 RPHNGGLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 111 r~~nGGli~l~el~~~v~k~Rg~-~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
++-+||.|+..||...+.+.-|. ....+|+++|..-++.+-.=|+|
T Consensus 23 ~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG 69 (98)
T 3n22_A 23 QEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQ 69 (98)
T ss_dssp TSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSS
T ss_pred cCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCC
Confidence 34455799999998888752210 01347888888888877665655
No 238
>2lf3_A Effector protein hopab3; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=34.31 E-value=1.2e+02 Score=22.49 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=45.1
Q ss_pred HHHHHHHHhcHhHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCC
Q 027597 15 VARDQYRLLGENVAKLRTDLMKEQ---LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLAS 81 (221)
Q Consensus 15 ~~~~~~~~~g~~l~~~~~~~l~~q---l~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s 81 (221)
.++..+...|...+..-++.|..| |+..+.+|+.++-.++. |-. .+| .-+.+.||||-.-
T Consensus 21 ~~r~amrNrgnn~adaaL~~L~qqGvdmerLraAle~~i~~~~p-iP~--Di~----raL~~VGI~p~id 83 (107)
T 2lf3_A 21 ANRVAMRNRGNNEADAALQALAQNGINMEDLRAALEAYIVWLRP-IPL--DIA----NALEGVGITPRFD 83 (107)
T ss_dssp CTHHHHCCSTHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCC-CCH--HHH----HHHHHTTCCCCCS
T ss_pred hhHHHHHhccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CCH--HHH----HHHHcCCCCCCCC
Confidence 345666777888788888888888 99999999999876653 322 344 6678999999753
No 239
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=34.30 E-value=49 Score=22.67 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=23.5
Q ss_pred HhcCCc--cHHHHHHhcCCCHHHHHHHHHH
Q 027597 187 QAQGFV--TVDEVERRLSWTSGRAIDALDI 214 (221)
Q Consensus 187 ~~~G~v--t~~~L~~~l~W~~~Ra~~~L~~ 214 (221)
...||+ +.+++++.+|.+...++.||..
T Consensus 42 D~~GYL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 42 NEKGFLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp TTSSTTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 357994 5889999999999999999854
No 240
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=34.03 E-value=1.7e+02 Score=24.49 Aligned_cols=85 Identities=15% Similarity=0.207 Sum_probs=56.9
Q ss_pred cHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCC-CeEEEEeCCEEEEEecCcccchhHHHHHHHHHhcCCccHHHH
Q 027597 119 NLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGN-GYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEV 197 (221)
Q Consensus 119 ~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~-g~~vi~i~~~~~v~Svp~Els~D~~~vlel~~~~G~vt~~~L 197 (221)
+..++...+.+.-|. ..||..=|.+-++..+. |. +..-.+-+| -|..++.++ +.++++.....|..+|
T Consensus 24 s~~~~~~~l~~~~g~--~~vs~~tv~~w~~r~~~-g~~~l~~~~r~g------rp~~~~~~~--i~~~v~~~~~~t~~~i 92 (345)
T 3hot_A 24 TAAESHRMLVEAFGE--QVPTVKTCERWFQRFKS-GDFDVDDKEHGK------PPKRYEDAE--LQALLDEDDAQTQKQL 92 (345)
T ss_dssp CHHHHHHHHHHHTCS--CSCCHHHHHHHHHHHTT-CCCCCSCCCCCC------CCCSSCHHH--HHHHHHHCSCCCHHHH
T ss_pred CHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHhC-CCccccCCCCCC------CCCcccHHH--HHHHHHhCccchHHHH
Confidence 456777777766664 35788888888887765 42 111111122 255666544 7788888889999999
Q ss_pred HHhcCCCHHHHHHHHHH
Q 027597 198 ERRLSWTSGRAIDALDI 214 (221)
Q Consensus 198 ~~~l~W~~~Ra~~~L~~ 214 (221)
++.++.+.......|..
T Consensus 93 a~~l~vs~~tV~r~L~~ 109 (345)
T 3hot_A 93 AEQLEVSQQAVSNRLRE 109 (345)
T ss_dssp HHHTTSCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 99999887777766654
No 241
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=33.92 E-value=1.1e+02 Score=23.15 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=45.7
Q ss_pred HHHHHHHHhcHhHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCC
Q 027597 15 VARDQYRLLGENVAKLRTDLMKEQ---LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLAS 81 (221)
Q Consensus 15 ~~~~~~~~~g~~l~~~~~~~l~~q---l~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s 81 (221)
.++..+...|...+..-++.|..| |+..+.+|+.++-.++. |-. .+| .-+.+.||||-.-
T Consensus 27 ~~r~amrNrgnn~ad~AL~~L~qqGvdmerLraAle~~im~~~p-iP~--Di~----raL~~VGI~P~id 89 (117)
T 3tl8_B 27 VDRAAMRNRGNDEADAALRGLVQQGVNLEHLRTALERHVMQRLP-IPL--DIG----SALQNVGINPSID 89 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCC-CCH--HHH----HHHHHTTCCCCCC
T ss_pred hhHHHHHhccccHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CCH--HHH----HHHHhCCCCCCCc
Confidence 346677788888888888888887 99999999999876553 322 344 6678999999853
No 242
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=33.82 E-value=27 Score=23.99 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=15.5
Q ss_pred hcCCccHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 027597 188 AQGFVTVDEVERRLSWTSGRAIDALDILLEVL 219 (221)
Q Consensus 188 ~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~ 219 (221)
..||||.++|+.+ .+ ..-+++|+++.
T Consensus 22 g~G~It~~eLr~~--lt----~eevd~~i~~~ 47 (75)
T 1h8b_A 22 DKPYILAEELRRE--LP----PDQAQYCIKRM 47 (75)
T ss_dssp SCSSBCHHHHHHH--SC----HHHHHHHHHHS
T ss_pred CCCCcCHHHHHhc--CC----HHHHHHHHHhc
Confidence 3688888888873 23 33455555553
No 243
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=33.79 E-value=42 Score=22.29 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHhhcc
Q 027597 136 EAVSEDDCLRAISKLK 151 (221)
Q Consensus 136 ~~IS~~DI~rAi~~L~ 151 (221)
..|+++||..|++.|+
T Consensus 53 kTI~~~Di~~A~~~l~ 68 (68)
T 1b67_A 53 KTIKAEDIELARKMFK 68 (68)
T ss_dssp SEECHHHHHHHGGGGC
T ss_pred CccCHHHHHHHHHhcC
Confidence 4599999999999875
No 244
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=33.59 E-value=1.4e+02 Score=21.94 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHhhhhcccCCCcc-cHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecC
Q 027597 95 FYYELGVQIVEICLATRPHNGGLI-NLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVP 172 (221)
Q Consensus 95 fy~eLavqIvevC~~tr~~nGGli-~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp 172 (221)
.|.+++.+|.+--..-.=.-|--+ +..+|...+. ||..=|.+|++.|..-| +-...-|.-.||...+
T Consensus 15 lY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~g---------VSr~tVReAl~~L~~eG--lv~~~~g~G~~V~~~~ 82 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIG---------VNPNTVSKAYQELERQE--VIITVKGKGTFIANQT 82 (134)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHT---------CCHHHHHHHHHHHHHTT--SEEEETTTEEEECCCS
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHC---------CCHHHHHHHHHHHHHCC--cEEEEcCcEEEEeCCc
Confidence 688888888887777666667666 6778887765 89999999999999877 4322334455665433
No 245
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=33.46 E-value=94 Score=22.23 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=29.4
Q ss_pred CCcccHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCCC
Q 027597 115 GGLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 115 GGli~l~el~~~v~k~Rg~-~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
+|.|+..||...+...-|. ....+|+++|.+-++.+-.=|+|
T Consensus 29 ~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG 71 (104)
T 3zwh_A 29 KFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDN 71 (104)
T ss_dssp TTSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSS
T ss_pred CCeECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCC
Confidence 3899999999888753221 12347888888888887766655
No 246
>2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide complex, ADP-ribosylation, arginine finger binding, lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A {Homo sapiens}
Probab=33.27 E-value=36 Score=21.02 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=17.6
Q ss_pred HHHHHHHhhcCCC----CCCCCHHHHHHHHhh
Q 027597 122 ELCNLLRQRRKSN----REAVSEDDCLRAISK 149 (221)
Q Consensus 122 el~~~v~k~Rg~~----~~~IS~~DI~rAi~~ 149 (221)
++.+.++|+-... ...++.+|++||+.-
T Consensus 4 ~~~EllsraQs~radDQRGLL~KEdLv~~l~d 35 (40)
T 2xns_C 4 GLVELLNRVQSSGAHDQRGLLSNEEVFRALRD 35 (40)
T ss_dssp HHHHHHHHHTTCSCCSCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHhHH
Confidence 3444555543332 247999999999753
No 247
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=32.98 E-value=64 Score=22.60 Aligned_cols=45 Identities=11% Similarity=-0.013 Sum_probs=27.3
Q ss_pred ccCCCcccHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCCC
Q 027597 112 PHNGGLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 112 ~~nGGli~l~el~~~v~k~Rg~-~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
+-+||.|+..|+...+...-+. ....+|+++|..-++.+-.=|+|
T Consensus 23 dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG 68 (99)
T 2y5i_A 23 EGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDN 68 (99)
T ss_dssp SSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSS
T ss_pred CCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCC
Confidence 3344688888888777653221 11356777777777666554444
No 248
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=32.81 E-value=62 Score=23.76 Aligned_cols=19 Identities=0% Similarity=0.064 Sum_probs=12.7
Q ss_pred HHHHHHh--cCCccHHHHHHh
Q 027597 182 ILELAQA--QGFVTVDEVERR 200 (221)
Q Consensus 182 vlel~~~--~G~vt~~~L~~~ 200 (221)
++..+.. .|+||.+++...
T Consensus 144 ~~~~~D~d~dG~i~~~ef~~~ 164 (185)
T 2sas_A 144 VYNVITDGGKVTFDLNRYKEL 164 (185)
T ss_dssp HHHHHHTTTTSCCSHHHHHHH
T ss_pred HHHHhcCCCCCcCcHHHHHHH
Confidence 5555443 589999988753
No 249
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=32.65 E-value=73 Score=22.57 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=28.9
Q ss_pred HHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 182 vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
||..+. .| ++...|+..+|-+...+...|+.|.+
T Consensus 13 IL~~i~-~~-~~~t~La~~~~ls~~~~~~~l~~L~~ 46 (95)
T 1r7j_A 13 ILEACK-SG-SPKTRIMYGANLSYALTGRYIKMLMD 46 (95)
T ss_dssp HHHHHT-TC-BCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHH-cC-CCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 566555 46 99999999999999999999998865
No 250
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=31.79 E-value=20 Score=26.48 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.1
Q ss_pred ccccChhHHHHHHHHHHHcCCCCCC
Q 027597 56 DIRKNPTFRSQFHEMCAKVGVDPLA 80 (221)
Q Consensus 56 eI~~dp~fR~~F~~mC~siGVDPL~ 80 (221)
.|+....|+.=|..||...|+||=.
T Consensus 36 kIK~tt~l~KL~~aYc~r~gv~~~s 60 (95)
T 2l76_A 36 PLRMSEPLQSVVDHMATHLGVSPSR 60 (95)
T ss_dssp EECSSSCTHHHHHHHHHHHTSCGGG
T ss_pred EEecCChHHHHHHHHHhhcCCChhh
Confidence 5788888999999999999999864
No 251
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=31.75 E-value=1.2e+02 Score=20.50 Aligned_cols=70 Identities=13% Similarity=0.292 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc---ccccChhHHHHHHHHHHH-----cCCCCCCCCCCccccccCccchHHHHHHHHHH
Q 027597 34 LMKEQLATFRSQLEDFARKHKN---DIRKNPTFRSQFHEMCAK-----VGVDPLASNKGFWAELLGIGDFYYELGVQIVE 105 (221)
Q Consensus 34 ~l~~ql~~F~~~L~~Fa~kh~~---eI~~dp~fR~~F~~mC~s-----iGVDPL~s~k~~ws~~lG~gdfy~eLavqIve 105 (221)
+|.+.++.++.....|. +.-+ -|..+ .|+.++.+ +|.. +. ...++
T Consensus 3 ~le~~~~~l~~~F~~~D-~~dG~~g~Is~~-----EL~~~l~~~~~~~lg~~-~~--------------------~~~v~ 55 (92)
T 3rm1_A 3 ELEKAVVALIDVFHQYS-GREGDKHKLKKS-----ELKELINNELSHFLEEI-KE--------------------QEVVD 55 (92)
T ss_dssp HHHHHHHHHHHHHHHHH-TSSSSTTSBCHH-----HHHHHHHHHCTTTSCCC-CS--------------------HHHHH
T ss_pred hHHHHHHHHHHHHHHHc-cCCCCcCeECHH-----HHHHHHHHHhhhhccCc-cc--------------------HHHHH
Confidence 46778888899999999 5433 67665 34455555 4421 11 11122
Q ss_pred HhhhhcccCC-CcccHHHHHHHHHhh
Q 027597 106 ICLATRPHNG-GLINLQELCNLLRQR 130 (221)
Q Consensus 106 vC~~tr~~nG-Gli~l~el~~~v~k~ 130 (221)
-.....+.|| |-|+..|-+..+.+.
T Consensus 56 ~~~~~~D~d~dG~I~f~EF~~~~~~l 81 (92)
T 3rm1_A 56 KVMETLDSNGDGECDFQEFMAFVAMI 81 (92)
T ss_dssp HHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCcHHHHHHHHHHH
Confidence 2222334454 888888888776653
No 252
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=31.67 E-value=70 Score=25.59 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 176 NKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 176 s~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
+.-+..||.+.. .|.+|..+|++.+|.++.-+..-|+.|.+
T Consensus 19 d~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~ 59 (192)
T 1uly_A 19 EDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKE 59 (192)
T ss_dssp SHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334556888887 58999999999999999999988888764
No 253
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=31.64 E-value=1.4e+02 Score=21.48 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=31.4
Q ss_pred HHHhhhhcccCC-CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 027597 104 VEICLATRPHNG-GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (221)
Q Consensus 104 vevC~~tr~~nG-Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~ 157 (221)
+..+....+.|| |.|+..|+...+... | +|++++...++.+-+=|+|.
T Consensus 104 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~-g-----~~~~~~~~~~~~~D~d~dg~ 152 (176)
T 1nya_A 104 VKGIVGMCDKNADGQINADEFAAWLTAL-G-----MSKAEAAEAFNQVDTNGNGE 152 (176)
T ss_dssp HHHHHHHTCSSCCSEEEHHHHHHHHHHT-T-----CCHHHHHHHHHHHCTTCSSE
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHh-C-----CCHHHHHHHHHHhCCCCCCC
Confidence 444444455555 888888888777653 2 67888877777765545443
No 254
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=31.39 E-value=78 Score=27.27 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=40.2
Q ss_pred ccchhHHHHHHHHHhc-CC------ccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQ-GF------VTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~-G~------vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.++.|...||+..+.. |+ -+++++.+.+|.|+.-++.||-.|.++
T Consensus 221 ~~~~~a~~il~~L~~~~G~l~~~DkS~pe~I~~~f~~SK~~FKrAiG~L~K~ 272 (285)
T 3go5_A 221 MLENDAQMILTYLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKA 272 (285)
T ss_dssp CCCHHHHHHHHHHHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHhcCCeeccCCCCCHHHHHHHhCcCHHHHHHHHHHHhhC
Confidence 6889999999999874 43 689999999999999999999999886
No 255
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na open conformation, chloride ION binding site; HET: NAG; 2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A 3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A 3scl_A
Probab=31.38 E-value=70 Score=30.22 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=44.0
Q ss_pred HHHHHHHcCCC-CCCCCCCccccccCccchH--HHHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHH
Q 027597 67 FHEMCAKVGVD-PLASNKGFWAELLGIGDFY--YELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDC 143 (221)
Q Consensus 67 F~~mC~siGVD-PL~s~k~~ws~~lG~gdfy--~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI 143 (221)
|+.||..+|++ ||.. +||| -+++...-.||.. ||..+..|++..+.-. ..++++-+
T Consensus 526 ~~~~~~~~~~~~~l~~-----------~d~~~~~~~~~~l~~i~~~-----G~s~~~~ell~~~tG~-----~~~~~~~l 584 (615)
T 1r42_A 526 QEALCQAAKHEGPLHK-----------CDISNSTEAGQKLFNMLRL-----GKSEPWTLALENVVGA-----KNMNVRPL 584 (615)
T ss_dssp HHHHHHTTTCCSCGGG-----------CCCTTCHHHHHHHHHHHTT-----TTSSCHHHHHHHHHSS-----SSCCSHHH
T ss_pred HHHHHHhccccCCccc-----------ccccCCHHHHHHHHHHHhC-----cCCCCHHHHHHHhcCC-----CCCChHHH
Confidence 56777777776 4443 6887 7777777777766 9999999999877632 34777766
Q ss_pred HHHHhhc
Q 027597 144 LRAISKL 150 (221)
Q Consensus 144 ~rAi~~L 150 (221)
+.=++-|
T Consensus 585 ~~y~~pl 591 (615)
T 1r42_A 585 LNYFEPL 591 (615)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 256
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=31.36 E-value=1.3e+02 Score=26.22 Aligned_cols=55 Identities=9% Similarity=0.276 Sum_probs=35.5
Q ss_pred HHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecCcccc
Q 027597 102 QIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELN 176 (221)
Q Consensus 102 qIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp~Els 176 (221)
.|++.... +|+-|+++|+-.. .| |+++||+.+++.|.. +....|..+| .++.++-
T Consensus 197 ~i~~~L~~----~~~~isi~~is~~----Tg-----i~~~Dii~tL~~l~~------l~~~kg~~~i-~~~~~~~ 251 (276)
T 3to7_A 197 TLITLLVE----HQKEITIDEISSM----TS-----MTTTDILHTAKTLNI------LRYYKGQHII-FLNEDIL 251 (276)
T ss_dssp HHHHHHHH----TCSEEEHHHHHHH----HC-----BCHHHHHHHHHHTTC------EEEETTEEEE-ECCHHHH
T ss_pred HHHHHHHh----cCCceeHHHHHHH----hC-----CCHHHHHHHHHHCCC------EEEeCCcEEE-EECHHHH
Confidence 34454443 3567899988533 33 899999999999887 3344566665 3444443
No 257
>3g9k_L Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional C excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_L*
Probab=31.25 E-value=40 Score=29.87 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=22.2
Q ss_pred CccchHH-HHHHHHHHHhhhhcccCCCcccHHHHHHH
Q 027597 91 GIGDFYY-ELGVQIVEICLATRPHNGGLINLQELCNL 126 (221)
Q Consensus 91 G~gdfy~-eLavqIvevC~~tr~~nGGli~l~el~~~ 126 (221)
|...||. ++|.+|++. |+|+++||-..
T Consensus 189 G~~~FY~G~iA~~iv~~---------G~lt~~DLa~y 216 (323)
T 3g9k_L 189 GAKGFYEGGVARAISKT---------AKISLEDIKGY 216 (323)
T ss_dssp TTHHHHSHHHHHHHHHH---------HTCCHHHHHTC
T ss_pred CcccccCCHHHHHHHHc---------CCCCHHHHhhC
Confidence 5568887 899999997 89988888744
No 258
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=31.21 E-value=1.1e+02 Score=22.28 Aligned_cols=94 Identities=9% Similarity=0.093 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHH
Q 027597 27 VAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEI 106 (221)
Q Consensus 27 l~~~~~~~l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvev 106 (221)
+...++..+-..++.++.....|-..+.+.|..+ .|+.++.++|..+- .+-...++..
T Consensus 59 i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~-----------------~~~~~~~~~~ 116 (167)
T 1gjy_A 59 MGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQ-----ELQKALTTMGFRLN-----------------PQTVNSIAKR 116 (167)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHCTTCCSEECHH-----HHHHHHHTTTCCCC-----------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCHH-----HHHHHHHHcCCCCC-----------------HHHHHHHHHH
Confidence 3434444444444555555555555555555543 35566666664311 0112233333
Q ss_pred hhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 027597 107 CLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (221)
Q Consensus 107 C~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~ 157 (221)
+ .+.|-|+..|.+..+.+. +++..+.+.+-+=|+|+
T Consensus 117 ~-----d~dg~i~~~eF~~~~~~~----------~~~~~~F~~~D~d~~G~ 152 (167)
T 1gjy_A 117 Y-----STSGKITFDDYIACCVKL----------RALTDSFRRRDSAQQGM 152 (167)
T ss_dssp T-----CBTTBEEHHHHHHHHHHH----------HHHHHHHHHHCTTCCSE
T ss_pred h-----CcCCcCcHHHHHHHHHHH----------HHHHHHHHHhCCCCCee
Confidence 3 344788888888777653 56666777766666665
No 259
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=31.09 E-value=1.6e+02 Score=21.77 Aligned_cols=15 Identities=20% Similarity=0.229 Sum_probs=11.7
Q ss_pred cCCccHHHHHHhcCC
Q 027597 189 QGFVTVDEVERRLSW 203 (221)
Q Consensus 189 ~G~vt~~~L~~~l~W 203 (221)
.|+||.+++...+.-
T Consensus 161 dG~I~~~Ef~~~~~~ 175 (190)
T 2l2e_A 161 DGQLTLEEFCEGSKR 175 (190)
T ss_dssp SCCBCHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHHh
Confidence 589999999876543
No 260
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=30.94 E-value=94 Score=19.04 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=28.6
Q ss_pred ccC-CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 112 PHN-GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 112 ~~n-GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
+.| .|.|+..|+...+... | ..++++++...++.+.+=|+|
T Consensus 16 D~d~~G~i~~~el~~~l~~~-~---~~~~~~~~~~~~~~~d~~~~g 57 (71)
T 2b1u_A 16 DQDGDGHITVDELRRAMAGL-G---QPLPQEELDAMIREADVDQDG 57 (71)
T ss_dssp CCSSSSEEEHHHHHHHGGGT-T---CSSCHHHHHHHHHHCCSSSSS
T ss_pred CCCCCCcCcHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCCCCCC
Confidence 444 4899999988777654 2 357888888877777654544
No 261
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=30.68 E-value=82 Score=18.26 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=24.2
Q ss_pred CcccchhH-HHHHHHHHhcCCccHHHHHHhcCCCHHHHHHH
Q 027597 172 PTELNKDH-NQILELAQAQGFVTVDEVERRLSWTSGRAIDA 211 (221)
Q Consensus 172 p~Els~D~-~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~ 211 (221)
|..++.++ ..++++.. .| .|..++++.+|.+..-....
T Consensus 3 p~~~~~~~~~~i~~l~~-~g-~s~~~ia~~lgvs~~Tv~r~ 41 (52)
T 1jko_C 3 PRAINKHEQEQISRLLE-KG-HPRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp CCSSCTTHHHHHHHHHH-TT-CCHHHHHHTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCCCHHHHHHH
Confidence 34455444 34555543 46 89999999999887654443
No 262
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=30.63 E-value=63 Score=28.71 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 179 ~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
...||++....|-+|..+|++.+|.++.=+...+++|+++
T Consensus 41 ~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~ 80 (429)
T 1z05_A 41 AGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDA 80 (429)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3458999888899999999999999999999999999874
No 263
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=30.60 E-value=57 Score=28.45 Aligned_cols=45 Identities=16% Similarity=0.426 Sum_probs=27.3
Q ss_pred HHHHHHhhhhcccC--CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccC
Q 027597 101 VQIVEICLATRPHN--GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG 154 (221)
Q Consensus 101 vqIvevC~~tr~~n--GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG 154 (221)
-.|++......... .--|++.|+-.. . -|+++||+.+++.|..+-
T Consensus 194 ~~i~~~L~~~~~~~~~~~~isi~~is~~----T-----~i~~~Dii~tL~~l~~l~ 240 (280)
T 2ou2_A 194 QTILEILMGLKSESGERPQITINEISEI----T-----SIKKEDVISTLQYLNLIN 240 (280)
T ss_dssp HHHHHHC-----------CCBHHHHHHH----H-----CBCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhcccccCCCCceeHHHHHHH----h-----CCCHHHHHHHHHHCCcEE
Confidence 45666666543321 116888887644 2 389999999999988763
No 264
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=30.59 E-value=1.1e+02 Score=19.93 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=23.0
Q ss_pred CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 115 GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
.|.|+..|+...+... | ..+|++++...++.+.+=|+|
T Consensus 34 ~G~i~~~el~~~l~~~-g---~~~~~~~~~~l~~~~D~~~dg 71 (90)
T 1avs_A 34 GGDISTKELGTVMRML-G---QNPTKEELDAIIEEVDEDGSG 71 (90)
T ss_dssp SSEECHHHHHHHHHHT-T---CCCCHHHHHHHHHHHCTTCCS
T ss_pred CCcCcHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCCCCCC
Confidence 3777777777766653 2 346777766666655443333
No 265
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=30.47 E-value=55 Score=24.04 Aligned_cols=43 Identities=21% Similarity=0.158 Sum_probs=23.7
Q ss_pred CCCcccHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCCC
Q 027597 114 NGGLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 114 nGGli~l~el~~~v~k~Rg~-~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
+||.|+..||...+...-+. ....+|+++|..-++.+-.=|+|
T Consensus 37 dGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG 80 (113)
T 2lnk_A 37 DKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDN 80 (113)
T ss_dssp CTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSS
T ss_pred CCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCC
Confidence 34577777777766542221 11345666666666665544444
No 266
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=30.25 E-value=1.2e+02 Score=22.19 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHhcCC--ccHHHHHHhc-CCCHHHHHHHHHHHHHHhc
Q 027597 177 KDHNQILELAQAQGF--VTVDEVERRL-SWTSGRAIDALDILLEVLQ 220 (221)
Q Consensus 177 ~D~~~vlel~~~~G~--vt~~~L~~~l-~W~~~Ra~~~L~~l~~~~~ 220 (221)
.|...||..|+..|. =|-.-|+..| +|++...+.=..+|++.++
T Consensus 39 e~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 39 EADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp HHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 345668999999774 4667799999 5999999999999988654
No 267
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=30.23 E-value=1e+02 Score=23.85 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=11.0
Q ss_pred cCCccHHHHHHhcC
Q 027597 189 QGFVTVDEVERRLS 202 (221)
Q Consensus 189 ~G~vt~~~L~~~l~ 202 (221)
.|+||.+++...+.
T Consensus 149 dG~I~~~Ef~~~~~ 162 (211)
T 2ggz_A 149 DGELTLEEFINGMA 162 (211)
T ss_dssp SSSBCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 58999999986543
No 268
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=30.11 E-value=44 Score=31.58 Aligned_cols=76 Identities=14% Similarity=0.077 Sum_probs=42.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccC----------CC-----cccHHHHH
Q 027597 60 NPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHN----------GG-----LINLQELC 124 (221)
Q Consensus 60 dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~n----------GG-----li~l~el~ 124 (221)
++++-.++..+|..--+.|-.+. ++...|++++.++|... -| +.+|--+-
T Consensus 395 s~e~L~~yi~~ar~~~~~p~ls~---------------ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA 459 (506)
T 3f8t_A 395 SYTLLRRYLLYAIREHPAPELTE---------------EARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLA 459 (506)
T ss_dssp CHHHHHHHHHHHHHHCSCCEECH---------------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCceeCH---------------HHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHH
Confidence 44555577777773333454332 44555666666665421 11 12222222
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHhhccc
Q 027597 125 NLLRQRRKSNREAVSEDDCLRAISKLKV 152 (221)
Q Consensus 125 ~~v~k~Rg~~~~~IS~~DI~rAi~~L~~ 152 (221)
+...+.++. ..|+++||..|+..++.
T Consensus 460 ~A~A~L~gR--~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 460 KAHARMRLS--DDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHTTC--SEECHHHHHHHHHHHHH
T ss_pred HHHHHHcCc--CCCCHHHHHHHHHHHHH
Confidence 333333443 78999999999998863
No 269
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=30.05 E-value=1.1e+02 Score=23.30 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH--hhcccccC
Q 027597 38 QLATFRSQLEDFARK--HKNDIRKN 60 (221)
Q Consensus 38 ql~~F~~~L~~Fa~k--h~~eI~~d 60 (221)
++..++.....|-.. +.+.|..+
T Consensus 35 ~~~~l~~~F~~~D~d~~~~G~i~~~ 59 (207)
T 2ehb_A 35 EVEALYELFKKLSSSIIDDGLIHKE 59 (207)
T ss_dssp HHHHHHHHHHHHTTSSSCSSCEEHH
T ss_pred HHHHHHHHHHHhccccCCCCccCHH
Confidence 344455555555555 55556543
No 270
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=29.91 E-value=1e+02 Score=22.39 Aligned_cols=29 Identities=7% Similarity=0.080 Sum_probs=26.2
Q ss_pred cCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 189 QGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 189 ~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.+.+|.++|++.+|.++.-...+|..|.+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 36799999999999999999999988865
No 271
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=29.84 E-value=83 Score=27.63 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=37.0
Q ss_pred cchhHHHHHH-----HHHhcCCccHHHHHHhc--CCCHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILE-----LAQAQGFVTVDEVERRL--SWTSGRAIDALDILLE 217 (221)
Q Consensus 175 ls~D~~~vle-----l~~~~G~vt~~~L~~~l--~W~~~Ra~~~L~~l~~ 217 (221)
++.-|..||+ +.+..|.|++.+|++.+ +.|.+=.+..|.+|=+
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~ 64 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEY 64 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 5677888999 77788999999999998 9999988888877643
No 272
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=29.84 E-value=23 Score=30.06 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.5
Q ss_pred cccccChhHHHHHHHHHHHcCCCC
Q 027597 55 NDIRKNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 55 ~eI~~dp~fR~~F~~mC~siGVDP 78 (221)
-.|.+||++ |.+++..+||.|
T Consensus 9 ~plESnP~V---ft~l~~~lGv~~ 29 (235)
T 1cmx_A 9 VPIESNPEV---FTNFAHKLGLKN 29 (235)
T ss_dssp CCEECCHHH---HHHHHHHHTBCT
T ss_pred eeecCCHHH---HHHHHHHcCCCC
Confidence 368999999 999999999954
No 273
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=29.79 E-value=69 Score=22.49 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=30.3
Q ss_pred HHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 183 LELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 183 lel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
..+++.--.+|.+.|++.++.+.+.++..|-.|+.+
T Consensus 22 ~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~ 57 (84)
T 1ufm_A 22 LSASKLYNNITFEELGALLEIPAAKAEKIASQMITE 57 (84)
T ss_dssp HHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence 344445677999999999999999999999999864
No 274
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=29.70 E-value=1.6e+02 Score=21.32 Aligned_cols=94 Identities=10% Similarity=0.092 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHH
Q 027597 27 VAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEI 106 (221)
Q Consensus 27 l~~~~~~~l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvev 106 (221)
+...++..+-..+..++.....|-..+.+.|..+ .|+.++.++|..+ . + +-..+++..
T Consensus 57 i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~-~-------------~---~~~~~~~~~ 114 (165)
T 1k94_A 57 MGFNAFKELWAALNAWKENFMTVDQDGSGTVEHH-----ELRQAIGLMGYRL-S-------------P---QTLTTIVKR 114 (165)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHCTTCCSBCCHH-----HHHHHHHHTTCCC-C-------------H---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCCCceECHH-----HHHHHHHHhCCCC-C-------------H---HHHHHHHHH
Confidence 3434444444445555556666655555555543 4556666666432 1 0 111222222
Q ss_pred hhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 027597 107 CLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (221)
Q Consensus 107 C~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~ 157 (221)
+ .+.|.|+..|.+..+.+. +++..+.+.+-+=|+|+
T Consensus 115 ~-----d~dg~i~~~eF~~~~~~~----------~~~~~~F~~~D~d~~G~ 150 (165)
T 1k94_A 115 Y-----SKNGRIFFDDYVACCVKL----------RALTDFFRKRDHLQQGS 150 (165)
T ss_dssp H-----CBTTBCBHHHHHHHHHHH----------HHHHHHHHTTCTTCCSE
T ss_pred h-----CCCCeEcHHHHHHHHHHH----------HHHHHHHHHhCCCCCCe
Confidence 2 344788888888777653 56777777776666665
No 275
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=29.53 E-value=94 Score=20.05 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=27.6
Q ss_pred cCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 113 ~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
.+.|.|+..|+...+.... ..+|++++...++.+.+=++|
T Consensus 35 d~~G~i~~~el~~~l~~~~----~~~~~~~~~~l~~~~d~~~~g 74 (87)
T 1s6j_A 35 DNSGTITFDELKDGLKRVG----SELMESEIKDLMDAADIDKSG 74 (87)
T ss_dssp TCSSCEEHHHHHHHHHTTT----SSCCHHHHHHHHHHHCTTCSS
T ss_pred CCCCcCcHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCCCC
Confidence 3348888888887776542 357888888777776654554
No 276
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=29.33 E-value=1.1e+02 Score=21.51 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=8.5
Q ss_pred cCCccHHHHHHh
Q 027597 189 QGFVTVDEVERR 200 (221)
Q Consensus 189 ~G~vt~~~L~~~ 200 (221)
.|.||.+++..-
T Consensus 130 dg~i~~~eF~~~ 141 (155)
T 3ll8_B 130 DGRISFEEFCAV 141 (155)
T ss_dssp SSSBCHHHHHHH
T ss_pred CCcCcHHHHHHH
Confidence 578888877653
No 277
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=29.23 E-value=81 Score=21.66 Aligned_cols=43 Identities=9% Similarity=-0.005 Sum_probs=31.5
Q ss_pred cchhHHHHHHHH-HhcCC---ccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 175 LNKDHNQILELA-QAQGF---VTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 175 ls~D~~~vlel~-~~~G~---vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
|+.-+..+|... ...+. +|..+|++.++.++.-+...|+.|.+
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444455555443 33233 99999999999999999999988865
No 278
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.23 E-value=95 Score=22.47 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=31.1
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVL 219 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~ 219 (221)
.|+..+..|+. . .....|..++++.+|.+...++..+....+.|
T Consensus 109 ~L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 109 NFSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp HSCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45566666666 3 33455999999999999987777766655544
No 279
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=28.89 E-value=1.1e+02 Score=21.71 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=37.7
Q ss_pred CcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 027597 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQ 220 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~~ 220 (221)
+..|+..+..|+.+.. ...|..++++.+|.+..-++.-+..+.+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4568999999998864 3458899999999999888888877776653
No 280
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.76 E-value=1.2e+02 Score=23.63 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=32.0
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVL 219 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~ 219 (221)
.|+..+..|+.+.-. ...|..++++.+|.+...++..+...++.|
T Consensus 187 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 187 KLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERL 231 (239)
T ss_dssp TSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 455566666665443 346999999999999988887776655544
No 281
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=28.71 E-value=1e+02 Score=20.77 Aligned_cols=34 Identities=12% Similarity=0.448 Sum_probs=25.1
Q ss_pred HHHHHHhcCCccHHHHHHhcC-----CCHHHHHHHHHHH
Q 027597 182 ILELAQAQGFVTVDEVERRLS-----WTSGRAIDALDIL 215 (221)
Q Consensus 182 vlel~~~~G~vt~~~L~~~l~-----W~~~Ra~~~L~~l 215 (221)
+++.+...||+|.+++.+.+. .+......+++.|
T Consensus 14 Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L 52 (72)
T 2k6x_A 14 LISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEEL 52 (72)
T ss_dssp HHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHH
T ss_pred HHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 555666789999999998774 6777766666544
No 282
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=28.48 E-value=1.4e+02 Score=21.04 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=32.3
Q ss_pred HHHHHHHHHhc-CCccHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQ-GFVTVDEVERRLSW-TSGRAIDALDILLEV 218 (221)
Q Consensus 179 ~~~vlel~~~~-G~vt~~~L~~~l~W-~~~Ra~~~L~~l~~~ 218 (221)
...||++|+.. ..||-++|...+.= +..--..+|+.|+++
T Consensus 16 e~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~ 57 (81)
T 2dk8_A 16 ENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSM 57 (81)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHc
Confidence 56699999874 56899999888865 777777899999875
No 283
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=28.39 E-value=1e+02 Score=18.67 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=30.9
Q ss_pred EEEeCCEEEEEecCcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHH
Q 027597 159 VISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDAL 212 (221)
Q Consensus 159 vi~i~~~~~v~Svp~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L 212 (221)
.++++|+.+.-+ .+..+...+..+. ..| .|..++++.+|.+..-....+
T Consensus 4 ~~~~~g~~~~l~---~~~~~~~~i~~l~-~~g-~s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 4 EIQVQGVRYYVE---SEDDLVSVAHELA-KMG-YTVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp EEEETTEEEEEC---SHHHHHHHHHHHH-HTT-CCHHHHHHHHTSCHHHHHHHH
T ss_pred HHhhccHHHHHh---cCHHHHHHHHHHH-HcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 567788876211 1223344555553 345 499999999999886655543
No 284
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=28.34 E-value=1.9e+02 Score=27.93 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=55.6
Q ss_pred hhhcccC-CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCC-EEEEEecCc-ccchhH-HHHH
Q 027597 108 LATRPHN-GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGK-KKLVRSVPT-ELNKDH-NQIL 183 (221)
Q Consensus 108 ~~tr~~n-GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~-~~~v~Svp~-Els~D~-~~vl 183 (221)
...-+.+ .|.|+..|+...+... | ..+|++++..-++.+..=|+|. |.+.. ..++...+. .-+.+. ..+.
T Consensus 731 F~~~D~d~~G~I~~~El~~~l~~~-g---~~~~~~~~~~~~~~~D~d~dG~--I~~~EF~~~~~~~~~~~~~~~~l~~aF 804 (863)
T 1sjj_A 731 FNHFDRKKTGMMDCEDFRACLISM-G---YNMGEAEFARIMSIVDPNRMGV--VTFQAFIDFMSRETADTDTADQVMASF 804 (863)
T ss_dssp HTTTCSSSSSEEESTTHHHHHHHH-T---CCCCTHHHHHHHHHHCTTSCSE--EETTHHHHTHHHHSTTCSSSHHHHHHH
T ss_pred HHHHCCCCCCCcCHHHHHHHHHHc-C---CCCCHHHHHHHHHHhCCCCCCc--CcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3344444 4999999999888765 3 3478888888777776656664 44431 011111111 111111 1123
Q ss_pred HHHH-hcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 184 ELAQ-AQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 184 el~~-~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.... ..|+||.++|..-+. ...++.|+++
T Consensus 805 ~~~~d~~G~Is~~El~~~l~------~~~~~~l~~~ 834 (863)
T 1sjj_A 805 KILAGDKNYITVDELRRELP------PDQAEYCIAR 834 (863)
T ss_dssp HGGGTSSSEEEHHHHHHHSC------HHHHHHHHHH
T ss_pred HHHhCCCCcCcHHHHHHHCC------HHHHHHHHHH
Confidence 2222 269999999999885 3344555544
No 285
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=28.08 E-value=99 Score=22.80 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=44.5
Q ss_pred HHHHHHHHhcHhHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCC
Q 027597 15 VARDQYRLLGENVAKLRTDLMKEQ---LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLAS 81 (221)
Q Consensus 15 ~~~~~~~~~g~~l~~~~~~~l~~q---l~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s 81 (221)
.++..+...|...+..-++.|..| |+..+.+|+.++-.++. |-. .+| .-+.+.||||-.-
T Consensus 10 ~~r~amrNrg~n~adaaL~~L~qqGvdmerLr~Al~~~i~~~~p-iP~--Di~----raL~~vGI~p~id 72 (101)
T 2lf6_A 10 LASAARHNHSANQTNEALRRLTQEGVDMERLRTSLGRYIMSLEP-LPP--DLR----RALESVGINPFIP 72 (101)
T ss_dssp HHHHHCCCCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHSSSCC-CCH--HHH----HHHHHHTCCSCCC
T ss_pred hhHHHHHhccccHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CCH--HHH----HHHHcCCCCCCCc
Confidence 455666677777788888888888 99999999999875553 322 344 6678899999853
No 286
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=28.06 E-value=1.2e+02 Score=25.40 Aligned_cols=48 Identities=17% Similarity=0.373 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCh
Q 027597 14 AVARDQYRLLGEN-------VAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61 (221)
Q Consensus 14 ~~~~~~~~~~g~~-------l~~~~~~~l~~ql~~F~~~L~~Fa~kh~~eI~~dp 61 (221)
.+++.+|..+-.. |.+.+...|..||..|.++|..|..+...-+..-.
T Consensus 149 ~~ak~kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~~~ 203 (224)
T 1i4d_A 149 QAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTL 203 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3557777765544 56788899999999999999999998887665554
No 287
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=28.01 E-value=1.5e+02 Score=23.51 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 027597 30 LRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60 (221)
Q Consensus 30 ~~~~~l~~ql~~F~~~L~~Fa~kh~~eI~~d 60 (221)
.+...+....+.|...|+.|+..|+++...+
T Consensus 52 ~~~~~l~~~i~~l~~~l~~y~e~~r~elf~k 82 (171)
T 2p2u_A 52 QKSAPLLARRKELEDGVATFATLNKTEMFKD 82 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhcCC
Confidence 3455677777888888888888888877543
No 288
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=28.01 E-value=2.5e+02 Score=23.05 Aligned_cols=145 Identities=14% Similarity=0.092 Sum_probs=75.0
Q ss_pred ccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCC--C
Q 027597 58 RKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSN--R 135 (221)
Q Consensus 58 ~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~--~ 135 (221)
-..+.++..|.+.+...+.++-.. .+ .++| +=|+.++.-...... .-=+|+=---...+.+.-+.. .
T Consensus 19 ~~~~~L~~~~~~i~~e~~~~~~I~-------vi-~~~l--e~av~~a~~~~~~~~-~dVIISRGgta~~Lr~~~~iPVV~ 87 (225)
T 2pju_A 19 VSVTRLFELFRDISLEFDHLANIT-------PI-QLGF--EKAVTYIRKKLANER-CDAIIAAGSNGAYLKSRLSVPVIL 87 (225)
T ss_dssp ECCHHHHHHHHHHHTTTTTTCEEE-------EE-CCCH--HHHHHHHHHHTTTSC-CSEEEEEHHHHHHHHTTCSSCEEE
T ss_pred EchHHHHHHHHHHHHhhCCCceEE-------Ee-cCcH--HHHHHHHHHHHhcCC-CeEEEeCChHHHHHHhhCCCCEEE
Confidence 345666667777776555431100 00 0333 335555544322100 001233333344444432221 1
Q ss_pred CCCCHHHHHHHHhhccccCCCeEEEEeCCEE----------------EEEecCcccchhHHHHHHHHHhc------CCcc
Q 027597 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKKK----------------LVRSVPTELNKDHNQILELAQAQ------GFVT 193 (221)
Q Consensus 136 ~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~----------------~v~Svp~Els~D~~~vlel~~~~------G~vt 193 (221)
-.+|--||++|++..+..++-+-++.+++.. +.-..+ .|-..+++-+... |-..
T Consensus 88 I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~----ee~~~~i~~l~~~G~~vVVG~~~ 163 (225)
T 2pju_A 88 IKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITE----EDARGQINELKANGTEAVVGAGL 163 (225)
T ss_dssp ECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSH----HHHHHHHHHHHHTTCCEEEESHH
T ss_pred ecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCCH----HHHHHHHHHHHHCCCCEEECCHH
Confidence 3799999999999999999888888886411 010111 1212233333332 4567
Q ss_pred HHHHHHhcCC------CHHHHHHHHHHHHH
Q 027597 194 VDEVERRLSW------TSGRAIDALDILLE 217 (221)
Q Consensus 194 ~~~L~~~l~W------~~~Ra~~~L~~l~~ 217 (221)
+-.+++.+|. +.+=.+.||++.++
T Consensus 164 ~~~~A~~~Gl~~vlI~s~eSI~~Ai~eA~~ 193 (225)
T 2pju_A 164 ITDLAEEAGMTGIFIYSAATVRQAFSDALD 193 (225)
T ss_dssp HHHHHHHTTSEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEECCHHHHHHHHHHHHH
Confidence 7788888875 45555666665544
No 289
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=27.87 E-value=13 Score=31.82 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHhc---CCccHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 027597 174 ELNKDHNQILELAQAQ---GFVTVDEVERRL-SWTSGRAIDALDILLEV 218 (221)
Q Consensus 174 Els~D~~~vlel~~~~---G~vt~~~L~~~l-~W~~~Ra~~~L~~l~~~ 218 (221)
.++.-+.+||+++... ..+++.+|.+.+ +.+....+.+|++|+.|
T Consensus 204 ~~~~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~e 252 (270)
T 2pi2_A 204 GLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNE 252 (270)
T ss_dssp -------------------------------------------------
T ss_pred CCCHHHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhC
Confidence 4666788899998864 579999999988 69999999999999876
No 290
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=27.56 E-value=34 Score=25.48 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=17.9
Q ss_pred cChhHHHHHHHHHHHcCCCC
Q 027597 59 KNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 59 ~dp~fR~~F~~mC~siGVDP 78 (221)
-+|+...+|.+.|.+.|+|+
T Consensus 118 l~~e~~~~f~~~~~~~G~~~ 137 (151)
T 1e5p_A 118 LTPEENEILVQFAHEKKIPV 137 (151)
T ss_dssp CCHHHHHHHHHHHHHTTCCG
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 36888999999999999995
No 291
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=27.41 E-value=24 Score=31.51 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.0
Q ss_pred ccccChhHHHHHHHHHHHcCCCCC
Q 027597 56 DIRKNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 56 eI~~dp~fR~~F~~mC~siGVDPL 79 (221)
.|-+||.+ |.+++..+||.++
T Consensus 10 pLESnP~V---ft~ll~~LGv~~~ 30 (328)
T 3ihr_A 10 LMESDPGV---FTELIKGFGCRGA 30 (328)
T ss_dssp CCCCCHHH---HHHHHHHHTCBSE
T ss_pred eecCCHHH---HHHHHHHcCCCce
Confidence 57899999 9999999999874
No 292
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=27.30 E-value=1.6e+02 Score=20.64 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=27.4
Q ss_pred hhhcccCC-CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhh
Q 027597 108 LATRPHNG-GLINLQELCNLLRQRRKSNREAVSEDDCLRAISK 149 (221)
Q Consensus 108 ~~tr~~nG-Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~ 149 (221)
...-+.+| |.|+..|+...+....| ..+|++++...++.
T Consensus 81 F~~~D~d~~G~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~ 120 (155)
T 3ll8_B 81 FRIYDMDKDGYISNGELFQVLKMMVG---NNLKDTQLQQIVDK 120 (155)
T ss_dssp HHHHCTTCSSCBCHHHHHHHHHHHHG---GGSCHHHHHHHHHH
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHHhc---cCCCHHHHHHHHHH
Confidence 33344444 89999999988876333 34788888877776
No 293
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=27.19 E-value=1.4e+02 Score=20.05 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=18.8
Q ss_pred CcccHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccC
Q 027597 116 GLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLG 154 (221)
Q Consensus 116 Gli~l~el~~~v~k~Rg~-~~~~IS~~DI~rAi~~L~~LG 154 (221)
|.|+..|+...+...-+. ....+|+++|.+-++.+-.=|
T Consensus 26 g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~ 65 (92)
T 3rm1_A 26 HKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNG 65 (92)
T ss_dssp TSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTS
T ss_pred CeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCC
Confidence 466666666555541110 113355555555555544433
No 294
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=27.05 E-value=1.5e+02 Score=20.91 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCccHHHHHHhc-CCCHHHHHHHHHHHHH
Q 027597 181 QILELAQAQGFVTVDEVERRL-SWTSGRAIDALDILLE 217 (221)
Q Consensus 181 ~vlel~~~~G~vt~~~L~~~l-~W~~~Ra~~~L~~l~~ 217 (221)
.||..... |.+|..+|++.+ |.++.-....|+.|.+
T Consensus 26 ~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 26 SLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp HHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 35555554 889999999999 9999999998888865
No 295
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=26.99 E-value=1.3e+02 Score=24.64 Aligned_cols=76 Identities=9% Similarity=0.163 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecCcccchhHHHHHHHHHh-cC-------------------CccHH
Q 027597 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQA-QG-------------------FVTVD 195 (221)
Q Consensus 136 ~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp~Els~D~~~vlel~~~-~G-------------------~vt~~ 195 (221)
..|..+|+.+|+-.+-.-+..-.++.++ .|..++..+ +++.+.. .| .++.+
T Consensus 198 ~~v~v~Dva~a~~~~~~~~~~~~~~~i~-------~~~~~s~~e--~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ 268 (311)
T 3m2p_A 198 EFLYAKDAAKSVIYALKQEKVSGTFNIG-------SGDALTNYE--VANTINNAFGNKDNLLVKNPNANEGIHSSYMDSS 268 (311)
T ss_dssp EEEEHHHHHHHHHHHTTCTTCCEEEEEC-------CSCEECHHH--HHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCH
T ss_pred ceEEHHHHHHHHHHHHhcCCCCCeEEeC-------CCCcccHHH--HHHHHHHHhCCCCcceecCCCCCCCcCceecCHH
Confidence 3688899999987764433233444443 344455333 4444432 22 36778
Q ss_pred HHHHhcCCCHH-HHHHHHHHHHHHhc
Q 027597 196 EVERRLSWTSG-RAIDALDILLEVLQ 220 (221)
Q Consensus 196 ~L~~~l~W~~~-Ra~~~L~~l~~~~~ 220 (221)
.+++.+||.+. -.+..|+++++.++
T Consensus 269 k~~~~lG~~p~~~~~~~l~~~~~~~~ 294 (311)
T 3m2p_A 269 KAKELLDFSTDYNFATAVEEIHLLMR 294 (311)
T ss_dssp HHHHHSCCCCSCCHHHHHHHHHHHHC
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHH
Confidence 88888999877 67788888877654
No 296
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=26.93 E-value=1.2e+02 Score=18.93 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=22.0
Q ss_pred CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 115 GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
.|.|+..|+...+... | ..+|++++...++.+..=|+|
T Consensus 21 ~G~i~~~el~~~l~~~-g---~~~~~~~~~~~~~~~d~~~~g 58 (77)
T 2joj_A 21 TGSIDYHELKVAMRAL-G---FDVKKPEILELMNEYDREGNG 58 (77)
T ss_dssp SSEEEHHHHHHHHHHH-T---CCCHHHHHHHHHHHHCCSSSS
T ss_pred CCCCcHHHHHHHHHHh-C---CCCCHHHHHHHHHHHCCCCCC
Confidence 3777777777666654 2 235666666655555443333
No 297
>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl R hyperthermophilic, unknown function; HET: PGE; 2.90A {Archaeoglobus fulgidus}
Probab=26.91 E-value=3.9e+02 Score=26.30 Aligned_cols=80 Identities=8% Similarity=0.176 Sum_probs=50.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCCCcccH---HHHHHHHHhhcCCCCC
Q 027597 60 NPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL---QELCNLLRQRRKSNRE 136 (221)
Q Consensus 60 dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l---~el~~~v~k~Rg~~~~ 136 (221)
||.-+.+.++|....+-+|.-.-++||- .+- .=|+..|+++ .+.||.-|++ +.++.-.-++ .....
T Consensus 225 d~~rk~EL~~ia~~~~~v~~~pa~tf~E-AlQ-~~~f~~l~~~--------~E~ng~~~s~GR~Dq~L~Pyy~~-Dl~~G 293 (776)
T 2f3o_A 225 DGERREELLKIAEICRKVPAEKPETFWE-AVQ-FVWLVQSALH--------QENYEQAISMGRIDQYLYPFFKK-DIGEG 293 (776)
T ss_dssp CTHHHHHHHHHHHHHHHTTTSCCCSHHH-HHH-HHHHHHHHHH--------HHSCSSCEECCSHHHHSHHHHHH-HTTTT
T ss_pred CHHHHHHHHHHHHHhCcCccCCCCCHHH-HHH-HHHHHHHHHh--------hcCCCCcccCccHHHHHHHHHHh-HHhcC
Confidence 8999999999999999999988888875 331 2334444433 2247755554 4444332221 22234
Q ss_pred CCCHHHHHHHHhhc
Q 027597 137 AVSEDDCLRAISKL 150 (221)
Q Consensus 137 ~IS~~DI~rAi~~L 150 (221)
.||+++...-++.|
T Consensus 294 ~lt~eeA~Eli~~f 307 (776)
T 2f3o_A 294 RINRELAFDILANL 307 (776)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 68888877766654
No 298
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=26.90 E-value=1.6e+02 Score=23.12 Aligned_cols=38 Identities=5% Similarity=0.096 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHH-HHHHcCCCCCC
Q 027597 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHE-MCAKVGVDPLA 80 (221)
Q Consensus 38 ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~-mC~siGVDPL~ 80 (221)
+...++.....|-..+.+.|..+ .|.. +...+|.+|..
T Consensus 49 ~~~~l~~~F~~~D~d~dG~Is~~-----El~~~l~~~lg~~~~~ 87 (226)
T 2lvv_A 49 SKSRRIELFKQFDTNGTGKLGFR-----EVLDGCYGILKLDEFT 87 (226)
T ss_dssp HHHHHHHHHHHHGGGSCSCBCSH-----HHHHHHHHTTCCTTTS
T ss_pred HHHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHHhCCCCCH
Confidence 34555666666767777777765 4555 44557877653
No 299
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=26.79 E-value=1.5e+02 Score=21.23 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=35.7
Q ss_pred ccchhHHHHHHHHHhc---CCccHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 027597 174 ELNKDHNQILELAQAQ---GFVTVDEVERRLSWTSGRAIDALDILLEVL 219 (221)
Q Consensus 174 Els~D~~~vlel~~~~---G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~ 219 (221)
.|+..+..|+.+--.. .-.|.+++++.+|.+..++++.+...++-|
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkL 67 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 67 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4666777788775432 458999999999999999998887766654
No 300
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=26.49 E-value=1.4e+02 Score=22.50 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=30.9
Q ss_pred ccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 027597 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVL 219 (221)
Q Consensus 174 Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~ 219 (221)
.|+..+..|+.+.-..| .|.+++++.+|++..-++.-+....+.|
T Consensus 140 ~L~~~~r~vl~l~~~~g-~s~~EIA~~lgis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG-LSYEEIAAIMDCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp HSCHHHHHHHHHHHTTC-CCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcC-CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 35556666666654434 6999999999999877766665554443
No 301
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=26.42 E-value=1.5e+02 Score=25.65 Aligned_cols=65 Identities=20% Similarity=0.349 Sum_probs=46.6
Q ss_pred HHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCCE-EEEEecCcccchhH
Q 027597 101 VQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKK-KLVRSVPTELNKDH 179 (221)
Q Consensus 101 vqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~-~~v~Svp~Els~D~ 179 (221)
.+|+++.. ...|..++-+||-..+. ||..-|-++|+.|+. .||.+..+.++ +.+...|+-|+.+.
T Consensus 6 ~~iL~~L~---~~~g~~~Sg~eLa~~lg---------vSr~aV~k~i~~L~~--~G~~i~~~~~~GY~L~~~~~~l~~~~ 71 (323)
T 3rkx_A 6 QDVLQLLY---KNKPNYISGQSIAESLN---------ISRTAVKKVIDQLKL--EGCKIDSVNHKGHLLQQLPDIWYQGI 71 (323)
T ss_dssp HHHHHHHH---HHTTSCBCHHHHHHHHT---------SCHHHHHHHHHHHHH--TTCEEEEETTTEEEEEECCSSCCHHH
T ss_pred HHHHHHHH---hCCCCccCHHHHHHHHC---------CCHHHHHHHHHHHHh--cCCeEEEeCCCeEEEecCcccCCHHH
Confidence 35666554 23356888888888876 899999999999997 45777777654 44556677777665
No 302
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=26.17 E-value=96 Score=21.18 Aligned_cols=47 Identities=19% Similarity=0.092 Sum_probs=38.1
Q ss_pred CcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 027597 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQ 220 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~~ 220 (221)
-..|+..+..|+.+. . ...|..++++.+|.+..-++.-+..+.+-|.
T Consensus 27 l~~Lt~~e~~vl~l~-~-~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 27 YEMLTEREMEILLLI-A-KGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGGCCSHHHHHHHHH-H-TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHH-H-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 346888899999885 3 3478999999999999999988888777653
No 303
>3bz6_A UPF0502 protein pspto_2686; APC84902, conserved domain, pseudomonas syringae PV. tomato DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} SCOP: a.4.5.75 a.4.5.75
Probab=26.13 E-value=2.7e+02 Score=22.72 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=63.6
Q ss_pred ccHHHHHHHHHhhcCCC-CCCCCHHHHHHHHhhccccCCCeEEEEeCCE--EEEEecC--cccchhHHHHHHHHHhcCCc
Q 027597 118 INLQELCNLLRQRRKSN-REAVSEDDCLRAISKLKVLGNGYEVISVGKK--KLVRSVP--TELNKDHNQILELAQAQGFV 192 (221)
Q Consensus 118 i~l~el~~~v~k~Rg~~-~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~--~~v~Svp--~Els~D~~~vlel~~~~G~v 192 (221)
++|.-|...-|..-+-. .-.+|+.||..|++.|+..|-=.. ..|++ +|=.... -.++..+..++-+.=-.|-=
T Consensus 46 LsLNaL~~aCNQKsnR~PVm~l~e~eV~~ald~L~~~~lv~~--~~gsRv~Ky~Hr~~~~l~l~~~e~All~~LlLRGpQ 123 (183)
T 3bz6_A 46 LTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRL--VMGSRADRWEHKVDKGLELVPAQVILTGLLLLRGPQ 123 (183)
T ss_dssp EEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEEE--ECCSSCCEEEECHHHHHTCCHHHHHHHHHHHHHCSB
T ss_pred chHHHHHHHhccccccCccccCCHHHHHHHHHHHHHCCCeEe--ecCCccHHHHcccchhcCCCHHHHHHHHHHHhcCCC
Confidence 45666666666543321 236899999999999987764322 24542 2222221 25777777777666668999
Q ss_pred cHHHHHHhcC----C-CHHHHHHHHHHHHH
Q 027597 193 TVDEVERRLS----W-TSGRAIDALDILLE 217 (221)
Q Consensus 193 t~~~L~~~l~----W-~~~Ra~~~L~~l~~ 217 (221)
|+.+|+.+-+ + +..-++++|+.|..
T Consensus 124 T~GELRtRs~Rl~~F~d~~~Ve~~L~~L~~ 153 (183)
T 3bz6_A 124 TVSELLTRSNRMHDFEDSEQVVHQLERLIA 153 (183)
T ss_dssp CHHHHHHHHTTTSCCSSHHHHHHHHHHHHH
T ss_pred ChhHHHHhHhhccccCCHHHHHHHHHHHhc
Confidence 9999987654 2 56677788887764
No 304
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=25.96 E-value=1.3e+02 Score=18.96 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=15.4
Q ss_pred CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhc
Q 027597 116 GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKL 150 (221)
Q Consensus 116 Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L 150 (221)
|.|+..|+...+.... .+|++++...++.+
T Consensus 18 G~i~~~el~~~l~~~g-----~~~~~~~~~~~~~~ 47 (78)
T 1k9u_A 18 GKISLSELTDALRTLG-----STSADEVQRMMAEI 47 (78)
T ss_dssp SEECHHHHHHHHHHHH-----TCCHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhC-----CCCHHHHHHHHHHh
Confidence 5666666665555432 24555555444443
No 305
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=25.93 E-value=1.2e+02 Score=21.66 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 181 ~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.|..+....|..|+.+|.+..|.+..=...||-.|.+|
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaRE 49 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARE 49 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhcc
Confidence 36677777889999999999999999999999999887
No 306
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=25.92 E-value=1.7e+02 Score=20.28 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=37.8
Q ss_pred CcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 027597 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQ 220 (221)
Q Consensus 172 p~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~~~ 220 (221)
...|+.-+..|+.+.. .| .|..++++.+|.+..-++.-+..+.+.|.
T Consensus 27 ~~~Lt~rE~~Vl~l~~-~G-~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-KG-FTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp --CCCHHHHHHHHHHH-TT-CCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHH-cC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3468888889999887 35 59999999999999988888888777653
No 307
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=25.71 E-value=1.1e+02 Score=24.43 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCC---CCCC
Q 027597 61 PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKS---NREA 137 (221)
Q Consensus 61 p~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~---~~~~ 137 (221)
..++..|+.+|...|+ ++.. -+|=...|...++ + | +++..+...+.-.... ....
T Consensus 206 ~~~~~~~~~~~~~~g~-~~~~-----------H~lRht~at~l~~--------~-g-~~~~~i~~~lGH~~~~~t~~Y~~ 263 (292)
T 4a8e_A 206 KTVWRLVKKYGRKAGV-ELTP-----------HQLRHSFATHMLE--------R-G-IDIRIIQELLGHSNLSTTQIYTK 263 (292)
T ss_dssp HHHHHHHHHHHHHTTC-CCCH-----------HHHHHHHHHHHHH--------T-T-CCHHHHHHHHCC-----CCCCST
T ss_pred HHHHHHHHHHHHHcCC-CcCc-----------ccchhHHHHHHHH--------c-C-CCHHHHHHHcCCCCcchhhhhhc
Confidence 3678889999999988 3221 1222222222222 2 2 4555555554433211 1246
Q ss_pred CCHHHHHHHHhhccccCCC
Q 027597 138 VSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 138 IS~~DI~rAi~~L~~LG~g 156 (221)
++++++.+|++.+.+++.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~ 282 (292)
T 4a8e_A 264 VSTKHLKEAVKKAKLVESI 282 (292)
T ss_dssp THHHHHHHHTTTTTTC---
T ss_pred CCHHHHHHHHHhcChHHHH
Confidence 8899999999999998865
No 308
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=25.66 E-value=1e+02 Score=22.69 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=55.9
Q ss_pred ccccChhHHHHHHHHHHHcCCC--CCCCCCCccccccCcc---------chHHHHHHHHHHHhhhhcccCCC-cccHHHH
Q 027597 56 DIRKNPTFRSQFHEMCAKVGVD--PLASNKGFWAELLGIG---------DFYYELGVQIVEICLATRPHNGG-LINLQEL 123 (221)
Q Consensus 56 eI~~dp~fR~~F~~mC~siGVD--PL~s~k~~ws~~lG~g---------dfy~eLavqIvevC~~tr~~nGG-li~l~el 123 (221)
+....|-=..+|...|..+|.| +|+. .||+. ++-..+..|+.++...=+..+|| =-++..|
T Consensus 5 ~~~~~~lt~~~l~~ia~~lg~dWk~LAr-------~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~~~Atv~~L 77 (118)
T 2of5_H 5 DAETGFLTQSNLLSVAGRLGLDWPAVAL-------HLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAGQPGAVGLL 77 (118)
T ss_dssp CTTTCCCCHHHHHHHHHTCCTTHHHHHH-------HTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSCSSHHHHH
T ss_pred CCCcCCCCHHHHHHHHHHHhhHHHHHHH-------HcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHH
Confidence 3444554456799999999976 3332 25653 23345678899999888899987 6888899
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHhhc
Q 027597 124 CNLLRQRRKSNREAVSEDDCLRAISKL 150 (221)
Q Consensus 124 ~~~v~k~Rg~~~~~IS~~DI~rAi~~L 150 (221)
+..+.+ +-..||..-|...
T Consensus 78 ~~aL~~--------~~r~diae~l~~~ 96 (118)
T 2of5_H 78 VQALEQ--------SDRQDVAEEVRAV 96 (118)
T ss_dssp HHHHHH--------TTCHHHHHHHHHH
T ss_pred HHHHHH--------cCcHHHHHHHHHH
Confidence 988887 4567777766653
No 309
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=25.53 E-value=1.8e+02 Score=22.60 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH--hhcccccC
Q 027597 39 LATFRSQLEDFARK--HKNDIRKN 60 (221)
Q Consensus 39 l~~F~~~L~~Fa~k--h~~eI~~d 60 (221)
+..++.....|-.. +.+.|..+
T Consensus 47 i~~l~~~F~~~D~d~~~~G~I~~~ 70 (226)
T 2zfd_A 47 IEALYELFKKISSAVIDDGLINKE 70 (226)
T ss_dssp HHHHHHHHHHHHTSSSCSSSBCHH
T ss_pred HHHHHHHHHHhCcccCCCCeEcHH
Confidence 44455555566665 66666543
No 310
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.38 E-value=99 Score=17.47 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=25.7
Q ss_pred CcccchhHH-HHHHHHHhcCCccHHHHHHhcCCCHHHHHHHH
Q 027597 172 PTELNKDHN-QILELAQAQGFVTVDEVERRLSWTSGRAIDAL 212 (221)
Q Consensus 172 p~Els~D~~-~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L 212 (221)
|..++.++. .++.+. ..| .|..++++.+|.+..=+...+
T Consensus 3 ~~~l~~~~~~~i~~~~-~~g-~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 3 GSALSDTERAQLDVMK-LLN-VSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp SCCCCHHHHHHHHHHH-HTT-CCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 445666554 455544 335 699999999999876555544
No 311
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=25.36 E-value=87 Score=22.46 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhcccc----cChhHHHHHHHHHHHcCCCCC
Q 027597 42 FRSQLEDFARKHKNDIR----KNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 42 F~~~L~~Fa~kh~~eI~----~dp~fR~~F~~mC~siGVDPL 79 (221)
|+..|..|....+.++. =++.=|+...++|..+|+.=-
T Consensus 21 i~~~l~~F~~~~~~~l~FP~sLs~~eR~~IH~lA~~~GL~h~ 62 (86)
T 1msz_A 21 FRAMIVEFMASKKMQLEFPPSLNSHDRLRVHQIAEEHGLRHD 62 (86)
T ss_dssp HHHHHHHHHHHTCSEEEECTTCCSHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHhcCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 66677777766666666 356789999999999998633
No 312
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=25.34 E-value=78 Score=25.86 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=37.7
Q ss_pred hHHHHHHHHHH-----HhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc
Q 027597 95 FYYELGVQIVE-----ICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK 151 (221)
Q Consensus 95 fy~eLavqIve-----vC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~ 151 (221)
++-.-+-.+|| ||.+.-..+.|.|+-+||+..|.+..+ +|..|+..+++.|-
T Consensus 19 l~~~~v~~~Ve~~l~~i~~~L~~~~~~~Mtk~eLi~~ia~~~~-----lsk~da~~vl~~l~ 75 (204)
T 2iie_A 19 IPAKTVEDAVKEMLEHMASTLAQGGSGGLTKAEMSEYLFDKLG-----LSKRDAKELVELFF 75 (204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTCCSSSBCHHHHHHHHHHHHC-----CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHcC-----CCHHHHHHHHHHHH
Confidence 33444445554 444455578899999999999998644 79999999988774
No 313
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer, PSI, protein structu initiative; HET: MSE; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A* 1pt7_A 1pt5_A 1pt8_A*
Probab=25.25 E-value=1.2e+02 Score=27.66 Aligned_cols=70 Identities=11% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 027597 67 FHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLR 145 (221)
Q Consensus 67 F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~r 145 (221)
|+.+|..||.+.|.....|-...--. .-.-+|-..|-+++.. -+..|...++....--.+...|.+|++.
T Consensus 279 w~~l~~~lg~~~l~~dprf~~~~~R~-~~~~~l~~~l~~~~~~--------~t~~ew~~~l~~~~vp~~pV~~~~e~~~ 348 (428)
T 1q7e_A 279 WENTCKAIGKPEWITDPAYSTAHARQ-PHIFDIFAEIEKYTVT--------IDKHEAVAYLTQFDIPCAPVLSMKEISL 348 (428)
T ss_dssp HHHHHHHTTCGGGGTCTTTSSHHHHG-GGHHHHHHHHHHHHTT--------SCHHHHHHHHGGGTCCEEECCCHHHHHH
T ss_pred HHHHHHHcCChhhccCcccCChHhHH-HhHHHHHHHHHHHHHh--------CCHHHHHHHHHhCCCCcccCcChHhccc
Confidence 78899999987776544332211001 1123455444455432 2478888888776544345677788764
No 314
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=25.16 E-value=1.1e+02 Score=21.02 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 181 ~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.||.+... |-.|+.+|++.+|.++.-+...|..|.+
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 27 MLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp HHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 36666644 7799999999999999988888887754
No 315
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=25.06 E-value=1.4e+02 Score=19.15 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=21.8
Q ss_pred CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 115 GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
.|.|+..|+...+.... .+|++++...++.+.+=|+|
T Consensus 25 ~G~i~~~el~~~l~~~g-----~~~~~~~~~~~~~~D~~~dg 61 (86)
T 2opo_A 25 DGKISSSELGDALKTLG-----SVTPDEVRRMMAEIDTDGDG 61 (86)
T ss_dssp SSEEEHHHHHHHHHTTT-----TCCHHHHHHHHHHHCTTCSS
T ss_pred CCCcCHHHHHHHHHHcC-----CCCHHHHHHHHHHhCCCCCC
Confidence 37777777776665532 35666666666655443333
No 316
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=25.05 E-value=2.1e+02 Score=21.04 Aligned_cols=93 Identities=20% Similarity=0.284 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhhcccCC-CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCC-EEEEEecCcccc
Q 027597 99 LGVQIVEICLATRPHNG-GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGK-KKLVRSVPTELN 176 (221)
Q Consensus 99 LavqIvevC~~tr~~nG-Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~-~~~v~Svp~Els 176 (221)
+....++-....-+.|| |.|+..|....+.... ...+.+++..+.+.+-.=|+|+ |+... +.+++ ...++
T Consensus 84 ~~~~~~~~~~~~~D~d~~g~i~~~ef~~~~~~~~----~~~~~~~~~~~F~~~D~d~~G~--I~~~E~~~~l~--~~~~~ 155 (191)
T 3khe_A 84 QIEAEVDHILQSVDFDRNGYIEYSEFVTVCMDKQ----LLLSRERLLAAFQQFDSDGSGK--ITNEELGRLFG--VTEVD 155 (191)
T ss_dssp HHHHHHHHHHHHTCTTCSSSEEHHHHHHHHSCHH----HHCCHHHHHHHHHHHCTTCSSE--ECHHHHHHHTT--SSCCC
T ss_pred hhHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhc----ccchHHHHHHHHHHHCCCCcCc--CCHHHHHHHHc--cCCCC
Confidence 33444444444445544 8899999888765432 2246666777777666656663 21110 01111 11233
Q ss_pred hhH-HHHHHHHHh--cCCccHHHHHH
Q 027597 177 KDH-NQILELAQA--QGFVTVDEVER 199 (221)
Q Consensus 177 ~D~-~~vlel~~~--~G~vt~~~L~~ 199 (221)
.++ ..++..+.. .|.||.++...
T Consensus 156 ~~~~~~~~~~~D~~~dg~i~~~eF~~ 181 (191)
T 3khe_A 156 DETWHQVLQECDKNNDGEVDFEEFVE 181 (191)
T ss_dssp HHHHHHHHHHHCTTCSSSEEHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 333 123333332 58888888764
No 317
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=25.00 E-value=1.3e+02 Score=26.70 Aligned_cols=61 Identities=10% Similarity=0.032 Sum_probs=44.7
Q ss_pred ccCCCeEEEEeCCEEEEEecCcccchhHHHHHHHHHhc--CCccHHHHHHhcCCCHHHHHHHHHHHH
Q 027597 152 VLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQ--GFVTVDEVERRLSWTSGRAIDALDILL 216 (221)
Q Consensus 152 ~LG~g~~vi~i~~~~~v~Svp~Els~D~~~vlel~~~~--G~vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (221)
.||.|---+.++++.+.-.| |+-|..||-+-.+. ..+|.++|.+..|.+..-.+.+|.-|+
T Consensus 178 ~lg~~~l~~~~~~~~~~l~v----s~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~ 240 (382)
T 3dpl_C 178 LMSNGIITFKNEVGQYDLEV----TTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLV 240 (382)
T ss_dssp GGCEEEEEEECSSCEEEEEE----EHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CcccEEEEEEeCCceEEEEE----cHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHh
Confidence 46655444444444444444 77798888776664 689999999999999999999998775
No 318
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=24.98 E-value=36 Score=23.61 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=27.9
Q ss_pred hhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEE
Q 027597 109 ATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVI 160 (221)
Q Consensus 109 ~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi 160 (221)
..+...|+..+|.+.... . -|.+++++++++. .||+|+
T Consensus 41 ~~~~~~g~~~TL~~aa~~----~-----gid~d~l~~~L~~-----~g~~~~ 78 (81)
T 2fi0_A 41 LMRNTVGRKVSLKQGSKL----A-----GTPMDKIVRTLEA-----NGYEVI 78 (81)
T ss_dssp HHHTTHHHHCBHHHHHHH----H-----TCCHHHHHHHHHH-----TTCEEE
T ss_pred HHHhhhcccCcHHHHHHH----c-----CCCHHHHHHHHHH-----cCCEee
Confidence 344456788899888643 2 2899999999887 478885
No 319
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=24.93 E-value=65 Score=23.16 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=25.4
Q ss_pred CCc-cHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 190 GFV-TVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 190 G~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
+.+ |..+|++.+|.++.-++.+|..|..+
T Consensus 41 ~~lps~~eLa~~lgVSr~tVr~al~~L~~~ 70 (102)
T 2b0l_A 41 EGLLVASKIADRVGITRSVIVNALRKLESA 70 (102)
T ss_dssp EEEECHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CcCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345 99999999999999999999988764
No 320
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.92 E-value=1.3e+02 Score=22.08 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccC
Q 027597 100 GVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG 154 (221)
Q Consensus 100 avqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG 154 (221)
-..|.++... +++=++..||+..+.+.. +.||..=|.|.++.|...|
T Consensus 13 R~~Il~~l~~----~~~~~sa~ei~~~l~~~~----~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 13 RAAISTLLET----LDDFRSAQELHDELRRRG----ENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHHH----CCSCEEHHHHHHHHHHTT----CCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh----CCCCCCHHHHHHHHHHhC----CCCCHhhHHHHHHHHHHCC
Confidence 3557777653 356799999999998753 4599999999999999766
No 321
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=24.70 E-value=1.7e+02 Score=20.41 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=29.6
Q ss_pred hhhcccCC-CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 108 LATRPHNG-GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 108 ~~tr~~nG-Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
...-+.|| |.|+..|+...+... | ..+|++++...++.+-+=|+|
T Consensus 89 F~~~D~d~~G~I~~~el~~~l~~~-g---~~~~~~~~~~~~~~~d~d~dg 134 (148)
T 1m45_A 89 FQVFDKESTGKVSVGDLRYMLTGL-G---EKLTDAEVDELLKGVEVDSNG 134 (148)
T ss_dssp HHTTCSSSSSEEEHHHHHHHHHHS-T---TCCCHHHHHHHHTTCCCCTTS
T ss_pred HHHhCCCCCCcCCHHHHHHHHHHc-C---CCCCHHHHHHHHHHhCCCCCC
Confidence 33444444 889999988877754 2 457888888777766544444
No 322
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=24.70 E-value=38 Score=25.73 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=18.2
Q ss_pred cChhHHHHHHHHHHHcCCCCC
Q 027597 59 KNPTFRSQFHEMCAKVGVDPL 79 (221)
Q Consensus 59 ~dp~fR~~F~~mC~siGVDPL 79 (221)
-+|+...+|++.|.+.|+|+=
T Consensus 120 ~~~e~~~~f~~~~~~~G~~~~ 140 (160)
T 3sao_A 120 VSPTAMAIFRKLARERNYTDE 140 (160)
T ss_dssp CCHHHHHHHHHHHHTTTCCGG
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 477888999999999999853
No 323
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A
Probab=24.56 E-value=84 Score=21.34 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=23.1
Q ss_pred cCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 113 ~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
.+||.|+..|+...+...-+. .. +|+++|..-++.+-.=|+|
T Consensus 24 ~dG~~I~~~El~~~l~~~~~~-~~-~~~~~i~~~~~~~D~d~dG 65 (92)
T 2kax_A 24 GSKLTLSRKELKELIKKELCL-GE-MKESSIDDLMKSLDKNSDQ 65 (92)
T ss_dssp SCSSEEEHHHHHHHHHHHSCC-TT-TCCTTHHHHHHHHTTTCSS
T ss_pred CCCCeeCHHHHHHHHHHHcCC-CC-CCHHHHHHHHHHhCCCCCC
Confidence 334477777777776543221 12 5666666666655544444
No 324
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=24.54 E-value=49 Score=28.95 Aligned_cols=41 Identities=22% Similarity=0.392 Sum_probs=25.6
Q ss_pred HHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccC
Q 027597 102 QIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG 154 (221)
Q Consensus 102 qIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG 154 (221)
.|++... +.+++-|+++|+-.. . -|+++||+.+++.|..|.
T Consensus 202 ~il~~L~---~~~~~~isi~~is~~----T-----~i~~~DIi~tL~~l~~l~ 242 (284)
T 2ozu_A 202 VILECLY---HQNDKQISIKKLSKL----T-----GICPQDITSTLHHLRMLD 242 (284)
T ss_dssp HHHHHHH---HC-----CHHHHHHH----H-----CBCHHHHHHHHHHTTCC-
T ss_pred HHHHHHH---hcCCCcEeHHHHHHH----h-----CCCHHHHHHHHHHCCCEE
Confidence 4555544 346788999987644 2 289999999999998764
No 325
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=24.54 E-value=65 Score=31.19 Aligned_cols=42 Identities=14% Similarity=0.361 Sum_probs=30.9
Q ss_pred ccCC-CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 027597 112 PHNG-GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (221)
Q Consensus 112 ~~nG-Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~ 157 (221)
+.|| |.|+..|.+..+.+... ..-+++++..|.+.+ .=|+|+
T Consensus 771 D~d~dG~I~~~EF~~~~~~~~~---~~~~~~~l~~aF~~~-~d~~G~ 813 (863)
T 1sjj_A 771 DPNRMGVVTFQAFIDFMSRETA---DTDTADQVMASFKIL-AGDKNY 813 (863)
T ss_dssp CTTSCSEEETTHHHHTHHHHST---TCSSSHHHHHHHHGG-GTSSSE
T ss_pred CCCCCCcCcHHHHHHHHHHHhc---CCCCHHHHHHHHHHH-hCCCCc
Confidence 4444 89999999988766432 235678899999998 667776
No 326
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=24.31 E-value=45 Score=23.65 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHcCCCCCCC
Q 027597 62 TFRSQFHEMCAKVGVDPLAS 81 (221)
Q Consensus 62 ~fR~~F~~mC~siGVDPL~s 81 (221)
+-...|++|+...||+|.++
T Consensus 18 ea~~~Fk~LL~e~~V~p~~t 37 (82)
T 2dod_A 18 ARMKQFKDMLLERGVSAFST 37 (82)
T ss_dssp HHHHHHHHHHHHTTCCSSSC
T ss_pred HHHHHHHHHHHHcCcCCCCC
Confidence 34468999999999999865
No 327
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=24.28 E-value=65 Score=28.49 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 179 ~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
+..+++.+...+++|.+++++.+|.+..-|+..|+.|++.
T Consensus 299 ~~~ll~~l~~~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~ 338 (373)
T 2qc0_A 299 SHELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDI 338 (373)
T ss_dssp CHHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 3457777777889999999999999999999999999863
No 328
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=23.97 E-value=2.3e+02 Score=21.28 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=20.2
Q ss_pred CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 115 GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
.|.|+..|+...+..... ..+++++..+.+.+-.=|+|
T Consensus 85 ~G~i~~~Ef~~~~~~~~~----~~~~~~~~~~f~~~D~d~~G 122 (207)
T 2d8n_A 85 DGTLDFKEYVIALHMTTA----GKTNQKLEWAFSLYDVDGNG 122 (207)
T ss_dssp CSEEEHHHHHHHHHHHSC----SSSSTTHHHHHHHHCTTCSS
T ss_pred CCeEeHHHHHHHHHHHcC----CCHHHHHHHHHHHhcCCCCC
Confidence 378888888777665421 13344444444444433334
No 329
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.76 E-value=1.4e+02 Score=22.44 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=36.7
Q ss_pred HHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccC
Q 027597 100 GVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG 154 (221)
Q Consensus 100 avqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG 154 (221)
-..|+++... +++=++..||+..+.+.. +.||..=|.|.++.|...|
T Consensus 24 R~~Il~~L~~----~~~~~sa~ei~~~l~~~~----~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 24 RHAILEYLVN----SMAHPTADDIYKALEGKF----PNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHH----CSSCCCHHHHHHHHGGGC----TTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh----CCCCCCHHHHHHHHHHhC----CCCChhhHHHHHHHHHHCC
Confidence 4567777664 356789999999997653 4599999999999998655
No 330
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=23.75 E-value=52 Score=25.47 Aligned_cols=34 Identities=9% Similarity=0.235 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCC
Q 027597 39 LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVD 77 (221)
Q Consensus 39 l~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVD 77 (221)
+..++.....|-..+.+.|..+ .|...+.++|.+
T Consensus 56 ~~~l~~~F~~~D~d~~G~Is~~-----El~~~l~~~g~~ 89 (197)
T 3pm8_A 56 INNLRNIFIALDVDNSGTLSSQ-----EILDGLKKIGYQ 89 (197)
T ss_dssp HHHHHHHHHHHCTTCSSEECHH-----HHHHHHHHHC--
T ss_pred HHHHHHHHHHHCCCCCCcCCHH-----HHHHHHHHhCCC
Confidence 3344444455545555566543 566666677765
No 331
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=23.72 E-value=2.2e+02 Score=20.85 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=13.4
Q ss_pred cCCccHHHHHHhcCCCH
Q 027597 189 QGFVTVDEVERRLSWTS 205 (221)
Q Consensus 189 ~G~vt~~~L~~~l~W~~ 205 (221)
.|+||.+++..-+.-.+
T Consensus 154 dG~i~~~Ef~~~~~~~~ 170 (183)
T 1s6c_A 154 DGIVTLDEFLESXQEDD 170 (183)
T ss_dssp SSEECHHHHHHHTTSCC
T ss_pred CCcEeHHHHHHHHhcCh
Confidence 58999999998776543
No 332
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=23.67 E-value=1.7e+02 Score=20.43 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=30.1
Q ss_pred hHHHHHHHHHh---cCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 178 DHNQILELAQA---QGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 178 D~~~vlel~~~---~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
++..|+.++.. .+++|+.+|+..||-++.=+..+|-.|.+
T Consensus 13 ~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~k 55 (75)
T 1sfu_A 13 IFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQK 55 (75)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555554 34599999999999999888888877765
No 333
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=23.62 E-value=1.6e+02 Score=19.18 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=24.9
Q ss_pred CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 115 GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
-|.|+..|+...+... | ..+|++++...++.+.+=++|
T Consensus 23 ~G~i~~~el~~~l~~~-g---~~~~~~~~~~l~~~~d~~~dg 60 (92)
T 2kn2_A 23 NGYISASELRHVMINL-G---EKLTDEEVEQMIKEADLDGDG 60 (92)
T ss_dssp SSEECHHHHHHHHHHT-T---CCCCHHHHHHHHHHHCSSCCS
T ss_pred CCeEcHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCCCCCC
Confidence 3788888888777653 2 347788777776665544433
No 334
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=23.51 E-value=1.4e+02 Score=21.35 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 180 NQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 180 ~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
..||.+.. .|-+|+.+|++.+|.++.-+..-|..|.+
T Consensus 21 ~~Il~~L~-~~~~~~~eLa~~l~is~~tvs~hL~~L~~ 57 (118)
T 3f6o_A 21 RAVLGRLS-RGPATVSELAKPFDMALPSFMKHIHFLED 57 (118)
T ss_dssp HHHHHHHH-TCCEEHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 34666665 48899999999999999998888887753
No 335
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=23.49 E-value=43 Score=25.14 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=17.9
Q ss_pred cChhHHHHHHHHHHHcCCCC
Q 027597 59 KNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 59 ~dp~fR~~F~~mC~siGVDP 78 (221)
-+|+...+|.+.|.+.|+|+
T Consensus 123 l~~e~~~~f~~~~~~~G~~~ 142 (156)
T 1bj7_A 123 FTPEELEKYQQLNSERGVPN 142 (156)
T ss_dssp CCHHHHHHHHHHHHHHTCCG
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 47888999999999999995
No 336
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Probab=23.46 E-value=1e+02 Score=21.21 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=28.6
Q ss_pred ccCCCcccHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCCC
Q 027597 112 PHNGGLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 112 ~~nGGli~l~el~~~v~k~Rg~-~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
+-+||.|+..|+...+...-+. ....+|+++|..-++.+-.=|+|
T Consensus 25 dg~gg~I~~~El~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG 70 (95)
T 2wcb_A 25 KGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDE 70 (95)
T ss_dssp SSSTTEEEHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTTSSSSTTS
T ss_pred CCCCCccCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHcCCCCC
Confidence 4455799999998887652110 01246888888877776655555
No 337
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=23.37 E-value=66 Score=20.62 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=17.7
Q ss_pred CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc
Q 027597 116 GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK 151 (221)
Q Consensus 116 Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~ 151 (221)
|.|+..|+...+... |. ..+|++++...++.+.
T Consensus 23 G~i~~~el~~~l~~~-g~--~~~~~~~~~~~~~~~D 55 (81)
T 1c7v_A 23 GVIDFDEFKFIMQKV-GE--EPLTDAEVEEAMKEAD 55 (81)
T ss_dssp GEECHHHHHHHSSTT-TT--CCCCHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHh-CC--CCCCHHHHHHHHHHhC
Confidence 677777766655442 10 2356666655555443
No 338
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=23.20 E-value=73 Score=27.77 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 181 ~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
.||++.. .|.+|-.+|++.+|.++.=+...+++|+++
T Consensus 24 ~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~ 60 (380)
T 2hoe_A 24 RILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEK 60 (380)
T ss_dssp CSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4889888 899999999999999999999999999875
No 339
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=23.08 E-value=47 Score=24.83 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=17.9
Q ss_pred cChhHHHHHHHHHHHcCCCC
Q 027597 59 KNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 59 ~dp~fR~~F~~mC~siGVDP 78 (221)
-+|+...+|++.|.++|+|+
T Consensus 124 ~~~e~~~~f~~~~~~~G~~~ 143 (157)
T 1dzk_A 124 IEDQDLEKFKEVTRENGIPE 143 (157)
T ss_dssp CCHHHHHHHHHHHHHTTCCG
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 47889999999999999995
No 340
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=22.84 E-value=1.8e+02 Score=21.02 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHhhc
Q 027597 136 EAVSEDDCLRAISKL 150 (221)
Q Consensus 136 ~~IS~~DI~rAi~~L 150 (221)
..|+++||..|++.+
T Consensus 80 ktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 80 KTVTSLDVVYALKRQ 94 (103)
T ss_dssp SEECHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHc
Confidence 469999999999987
No 341
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=22.76 E-value=1.9e+02 Score=19.71 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=25.2
Q ss_pred CCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 114 NGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 114 nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
+.|.|+..|+...+... | ..+|++++...++.+.+=|+|
T Consensus 45 ~~G~I~~~el~~~l~~~-g---~~~~~~~~~~l~~~~D~d~dg 83 (107)
T 2d58_A 45 GNGDIDIMSLKRMLEKL-G---VPKTHLELKKLIGEVSSGSGE 83 (107)
T ss_dssp TTSCEEHHHHHHHHHHT-T---CCCCHHHHHHHHHHHCSSSSS
T ss_pred CCCcCcHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCCCCCC
Confidence 34888888888777653 2 346777777776665443333
No 342
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=22.71 E-value=4.5e+02 Score=24.18 Aligned_cols=116 Identities=14% Similarity=0.054 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhhhhcc-------cCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEe---C-CE
Q 027597 97 YELGVQIVEICLATRP-------HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISV---G-KK 165 (221)
Q Consensus 97 ~eLavqIvevC~~tr~-------~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i---~-~~ 165 (221)
.+.+-+|++.++.-.. ..+--|++.++.+.|.. ...++.+.|.+-++.|..=..+|- -.. | |.
T Consensus 260 ~~~a~~V~~~lL~~~e~~~~~~~~~s~~is~~~I~~~l~~-----~~~l~~~~l~~~L~lL~~~~~~fv-~~~g~~g~g~ 333 (534)
T 2xub_A 260 DQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPV-----GYNISKQVLDQYLTLLADDPLEFV-GKSGDSGGGM 333 (534)
T ss_dssp CHHHHHHHHHHHHTTTTTSCTTCSBCCCEEHHHHHHTSCT-----TCCCCHHHHHHHHHHHHSCTTCCE-EECCCCSSCE
T ss_pred CcHHHHHHHHHHHHhhccCCccccCCCcccHHHHHHHcCC-----cccccHHHHHHHHHHHhCCcHHhh-hccccCCCce
Confidence 4567788888884221 23456889999888832 256899999999999975334452 222 2 33
Q ss_pred EEEEecCc--c-------------cchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597 166 KLVRSVPT--E-------------LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV 218 (221)
Q Consensus 166 ~~v~Svp~--E-------------ls~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (221)
+.|-.... - +...-..|+.+....|+++.++|++..+.+.-=++.+|-.|.++
T Consensus 334 y~V~~~~~~~~lr~~~ie~ii~~~~G~~a~RI~r~L~~~~~l~d~~ia~~a~i~~k~vR~~Ly~L~~~ 401 (534)
T 2xub_A 334 YVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDMLYKMLSE 401 (534)
T ss_dssp EEEBHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC---CHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred EEEeHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 33321110 0 11122223444445789999999999999999999999888753
No 343
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=22.69 E-value=2.1e+02 Score=21.42 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=48.3
Q ss_pred HHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEe--CCEEEEEecCcccch
Q 027597 100 GVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISV--GKKKLVRSVPTELNK 177 (221)
Q Consensus 100 avqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i--~~~~~v~Svp~Els~ 177 (221)
|++++-.+.. . .|+.++..|+-.+++ ||+.-|.+.+..|+.-| + |... +|-+.+---|.+++-
T Consensus 16 Al~~L~~La~-~--~~~~~~~~~iA~~~~---------i~~~~l~kil~~L~~~G--l-v~s~rG~GGy~L~~~p~~Itl 80 (149)
T 1ylf_A 16 AVHILSILKN-N--PSSLCTSDYMAESVN---------TNPVVIRKIMSYLKQAG--F-VYVNRGPGGAGLLKDLHEITL 80 (149)
T ss_dssp HHHHHHHHHH-S--CGGGCCHHHHHHHHT---------SCHHHHHHHHHHHHHTT--S-EEEC---CCEEESSCGGGCBH
T ss_pred HHHHHHHHHh-C--CCCCcCHHHHHHHHC---------cCHHHHHHHHHHHHHCC--c-EEEccCCCceEeCCChhhCcH
Confidence 6666655544 2 467899999988765 89999999999999855 4 3333 233444445777874
Q ss_pred hHHHHHHHHHh
Q 027597 178 DHNQILELAQA 188 (221)
Q Consensus 178 D~~~vlel~~~ 188 (221)
-. |++..+.
T Consensus 81 ~d--Vi~a~e~ 89 (149)
T 1ylf_A 81 LD--VYHAVNV 89 (149)
T ss_dssp HH--HHHHHCC
T ss_pred HH--HHHHHcc
Confidence 44 6665553
No 344
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=22.68 E-value=1.2e+02 Score=29.44 Aligned_cols=62 Identities=19% Similarity=0.128 Sum_probs=46.4
Q ss_pred ccCCCeEEEEeCCEEEEEecCcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 152 VLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 152 ~LG~g~~vi~i~~~~~v~Svp~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.||.+=--..++++.+.-+ .|+-|..||-+-.....+|.++|.+..|.+..-.+.+|.-|++
T Consensus 568 ~lg~~~l~~~~~~~~~~l~----vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~k 629 (760)
T 1ldj_A 568 QLSKGELVTNCFKNRYTLQ----ASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLK 629 (760)
T ss_dssp GGCCCEEEESSSSSCCEEE----CCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred ccccEEEEEEECCceEEEE----EcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4666543334444333333 4788999998887788999999999999999999999988764
No 345
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=22.35 E-value=1.7e+02 Score=26.87 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=44.1
Q ss_pred HHHHHHH--HHHHhhccc----------ccChhHHHHHHHHHHHcCCCCCCCC--CC-----ccccccCccchHHHHHHH
Q 027597 42 FRSQLED--FARKHKNDI----------RKNPTFRSQFHEMCAKVGVDPLASN--KG-----FWAELLGIGDFYYELGVQ 102 (221)
Q Consensus 42 F~~~L~~--Fa~kh~~eI----------~~dp~fR~~F~~mC~siGVDPL~s~--k~-----~ws~~lG~gdfy~eLavq 102 (221)
.+.+|-+ ||++|.+.. ++.|++-....+-+.-+|+||=..- +| +-|+ --+.|++.+.+
T Consensus 19 ~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~QS~---r~~~y~~~~~~ 95 (468)
T 1j09_A 19 AYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSE---RLPLYQKYAEE 95 (468)
T ss_dssp HHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGG---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeeccC---CHHHHHHHHHH
Confidence 4556666 688888766 6788888899999999999965321 00 1111 13889999999
Q ss_pred HHHH
Q 027597 103 IVEI 106 (221)
Q Consensus 103 Ivev 106 (221)
+++-
T Consensus 96 L~~~ 99 (468)
T 1j09_A 96 LLKR 99 (468)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9985
No 346
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=22.23 E-value=1.9e+02 Score=21.27 Aligned_cols=38 Identities=13% Similarity=0.319 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Q 027597 32 TDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEM 70 (221)
Q Consensus 32 ~~~l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~m 70 (221)
++.|..|+++|-..+.. ..-...-|.+|.++..=|+..
T Consensus 6 ~~~l~~sv~if~NRmks-n~~RGrsi~nDssVQsLF~~l 43 (98)
T 3f1i_H 6 LKALQNAVTTFVNRMKS-NHMRGRSITNDSAVLSLFQSI 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHTCCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHhCCCCCcccHHHHHHHHHH
Confidence 56789999999888887 444566899999999888765
No 347
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=22.05 E-value=1.1e+02 Score=23.10 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=34.2
Q ss_pred HHHHHHhhhhcccCCCc-ccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccC
Q 027597 101 VQIVEICLATRPHNGGL-INLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG 154 (221)
Q Consensus 101 vqIvevC~~tr~~nGGl-i~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG 154 (221)
..|++......+.+|=+ .+++|+...+. +++++|.++++.+..|.
T Consensus 22 ~~ia~~iI~~LD~~GYL~~~l~eia~~l~---------~~~~eve~vL~~iQ~~d 67 (130)
T 2k9m_A 22 QELALELLNYLNEKGFLSKSVEEISDVLR---------CSVEELEKVRQKVLRLE 67 (130)
T ss_dssp HHHHHHHTTSBCTTSSBSSCHHHHHHHTT---------CCHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHcC---------CCHHHHHHHHHHHhcCC
Confidence 45677777778888766 67888887652 89999999888877654
No 348
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=22.01 E-value=1.8e+02 Score=19.46 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=19.2
Q ss_pred CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc
Q 027597 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV 152 (221)
Q Consensus 115 GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~ 152 (221)
-|.|+..|+...+...- .....+|++++...++.+-+
T Consensus 55 ~G~i~~~el~~~l~~~~-~~g~~~~~~~~~~~~~~~D~ 91 (109)
T 5pal_A 55 SGFIEEEELKGVLKGFS-AHGRDLNDTETKALLAAGDS 91 (109)
T ss_dssp SSEECHHHHHTHHHHHC-TTCCCCCHHHHHHHHHHHCT
T ss_pred CCcCcHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHhCC
Confidence 36666666666555431 00134566666555555443
No 349
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=21.94 E-value=1.6e+02 Score=18.72 Aligned_cols=41 Identities=10% Similarity=0.175 Sum_probs=26.8
Q ss_pred ccCC-CcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 027597 112 PHNG-GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 112 ~~nG-Gli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g 156 (221)
+.|| |.|+..|+...+... | ..+|++++...++.+..=|+|
T Consensus 24 D~d~~G~i~~~el~~~l~~~-g---~~~~~~~~~~~~~~~d~~~~g 65 (85)
T 2ktg_A 24 DKDNDNKLTAEELGTVMRAL-G---ANPTKQKISEIVKDYDKDNSG 65 (85)
T ss_dssp CTTCCSEEEHHHHHHHHHTT-S---SCCCHHHHHHHHHHHSSSSCS
T ss_pred CCCCCCcCcHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCCCCCC
Confidence 4444 888888888777654 2 347777777777666544444
No 350
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=21.58 E-value=52 Score=24.76 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=17.9
Q ss_pred cChhHHHHHHHHHHHcCCCC
Q 027597 59 KNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 59 ~dp~fR~~F~~mC~siGVDP 78 (221)
-+|+...+|++.|.++|+|+
T Consensus 125 ~~~e~~~~f~~~~~~~G~~~ 144 (160)
T 2hlv_A 125 VEDEDLEKFWKLTEDKGIDK 144 (160)
T ss_dssp CCHHHHHHHHHHHHHTTCCG
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 47889999999999999995
No 351
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=21.54 E-value=1.6e+02 Score=20.62 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=29.0
Q ss_pred HHHHHHhcCCccHHHHHHhc-CCCHHHHHHHHHHHHH
Q 027597 182 ILELAQAQGFVTVDEVERRL-SWTSGRAIDALDILLE 217 (221)
Q Consensus 182 vlel~~~~G~vt~~~L~~~l-~W~~~Ra~~~L~~l~~ 217 (221)
||.... .|-.+..+|++.+ |.++.-.-..|+.|.+
T Consensus 19 IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 19 ILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp HHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 555554 5889999999999 9999999998888765
No 352
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A
Probab=21.53 E-value=92 Score=21.41 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=17.2
Q ss_pred CCcccHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCC
Q 027597 115 GGLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGN 155 (221)
Q Consensus 115 GGli~l~el~~~v~k~Rg~-~~~~IS~~DI~rAi~~L~~LG~ 155 (221)
||.|+..|+...+...-+. ....+|+++|..-++.+-.=|+
T Consensus 25 ~G~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~d 66 (95)
T 1j55_A 25 TQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGD 66 (95)
T ss_dssp TTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSS
T ss_pred CCcCCHHHHHHHHHHHhHhhcccccCHHHHHHHHHHhCCCCC
Confidence 3666666666666442111 0123455555555554443333
No 353
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=21.38 E-value=2.3e+02 Score=21.26 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeC---CEEEEEecCc
Q 027597 97 YELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVG---KKKLVRSVPT 173 (221)
Q Consensus 97 ~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~---~~~~v~Svp~ 173 (221)
...|++++-.+.. +..++.++..|+-.+++ |++.-+.+.+..|+.-| + |.... |-+.+.--|.
T Consensus 10 ~~yAl~~L~~La~--~~~~~~~s~~~IA~~~~---------i~~~~l~kil~~L~~aG--l-v~s~rG~~GGy~Lar~p~ 75 (143)
T 3t8r_A 10 GRYGLTLMISLAK--KEGQGCISLKSIAEENN---------LSDLYLEQLVGPLRNAG--L-IRSVRGAKGGYQLRVPAE 75 (143)
T ss_dssp HHHHHHHHHHHHT--TTTSCCEEHHHHHHHTT---------CCHHHHHHHHHHHHHTT--S-EEECSSSSSEEEESSCGG
T ss_pred HHHHHHHHHHHHh--CCCCCCcCHHHHHHHHC---------cCHHHHHHHHHHHHHCC--E-EEecCCCCCCeeecCCcc
Confidence 3456666654443 23456899999987754 89999999999998765 4 44443 4455656677
Q ss_pred ccchhHHHHHHHHHh
Q 027597 174 ELNKDHNQILELAQA 188 (221)
Q Consensus 174 Els~D~~~vlel~~~ 188 (221)
+++--. |++..+.
T Consensus 76 ~Itl~d--V~~aveg 88 (143)
T 3t8r_A 76 EISAGD--IIRLLEG 88 (143)
T ss_dssp GCBHHH--HHHHHHC
T ss_pred cCCHHH--HHHHhCC
Confidence 888544 6666653
No 354
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=21.35 E-value=1.8e+02 Score=20.41 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=24.1
Q ss_pred CcccHHHHHHHHHhhcCCC-CCCCCHHHHHHHHhhccccCCC
Q 027597 116 GLINLQELCNLLRQRRKSN-REAVSEDDCLRAISKLKVLGNG 156 (221)
Q Consensus 116 Gli~l~el~~~v~k~Rg~~-~~~IS~~DI~rAi~~L~~LG~g 156 (221)
|.|+..||...+.+.-+.. ....++++|..-++.+-.=|+|
T Consensus 29 G~Is~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG 70 (100)
T 3nxa_A 29 NKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDG 70 (100)
T ss_dssp TCBCHHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSC
T ss_pred CeEcHHHHHHHHHHHccccccccccHHHHHHHHHHhCCCCCC
Confidence 7888888877776533211 1234466676666666554544
No 355
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.31 E-value=83 Score=23.35 Aligned_cols=6 Identities=33% Similarity=0.822 Sum_probs=3.1
Q ss_pred cchHHHH
Q 027597 93 GDFYYEL 99 (221)
Q Consensus 93 gdfy~eL 99 (221)
.||| +|
T Consensus 48 ddFF-~l 53 (110)
T 2cq8_A 48 TDFF-KS 53 (110)
T ss_dssp CBHH-HH
T ss_pred CCHH-hc
Confidence 3665 44
No 356
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Probab=21.23 E-value=2.8e+02 Score=27.41 Aligned_cols=108 Identities=10% Similarity=0.132 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhcc------cccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCCCc
Q 027597 44 SQLEDFARKHKND------IRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGL 117 (221)
Q Consensus 44 ~~L~~Fa~kh~~e------I~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGl 117 (221)
+.+..||..|... -..||.-+.++++|....+-+|.-.-++||- .+- .=|+..|+++ .+.||.-
T Consensus 213 eavi~~a~Rya~la~elA~~e~d~~rk~EL~~iA~~~~~vp~~pa~tf~E-AlQ-~~~f~~l~~~--------~E~ng~~ 282 (787)
T 1r9d_A 213 EAAITYVNRYAKKAKEIADNTSDAKRKAELNEIAKICSKVSGEGAKSFYE-ACQ-LFWFIHAIIN--------IESNGHS 282 (787)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTSCCCSHHH-HHH-HHHHHHHHHH--------HHCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHhcccccCCCCCHHH-HHH-HHHHHHHHhh--------hccCCCc
Confidence 4444544444332 2378999999999999999999988888875 331 2344444433 2247755
Q ss_pred ccH---HHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc----cc-------------C-CCeEEEEeCCE
Q 027597 118 INL---QELCNLLRQRRKSNREAVSEDDCLRAISKLK----VL-------------G-NGYEVISVGKK 165 (221)
Q Consensus 118 i~l---~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~----~L-------------G-~g~~vi~i~~~ 165 (221)
|++ +.++.-.-++ .. + ||+++...-++.+= .. | +.|.-+.|||.
T Consensus 283 ~S~GR~Dq~L~Pyy~~-Dl--~-lt~eeA~Eli~~f~iK~~~~~~~r~~~~~~~f~G~~~~~~~~iGG~ 347 (787)
T 1r9d_A 283 ISPARFDQYMYPYYEN-DK--N-ITDKFAQELIDCIWIKLNDINKVRDEISTKHFGGYPMYQNLIVGGQ 347 (787)
T ss_dssp BCCBSHHHHHHHHHHH-CS--S-CCHHHHHHHHHHHHHHTTTBCCCCCTTHHHHSCSSCCCCEEEECCB
T ss_pred ccCccHHHHHHHHHhc-cc--c-CCHHHHHHHHHHHHHHhhcccccCCcchhhccCCCCCcceEEECCc
Confidence 554 5555443332 22 2 89988877776542 11 1 45777888865
No 357
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ...
Probab=21.22 E-value=53 Score=24.92 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=17.6
Q ss_pred cChhHHHHHHHHHHHcCCCC
Q 027597 59 KNPTFRSQFHEMCAKVGVDP 78 (221)
Q Consensus 59 ~dp~fR~~F~~mC~siGVDP 78 (221)
-+|+...+|++.|.++|+|+
T Consensus 126 ~~~~~~~~f~~~~~~~G~~~ 145 (162)
T 3kff_A 126 LNSDIKEKFVKLCEEHGIIK 145 (162)
T ss_dssp CCHHHHHHHHHHHHHTTCCG
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 46788889999999999985
No 358
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=21.10 E-value=1.7e+02 Score=22.62 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeC---CEEEEEecCcc
Q 027597 98 ELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVG---KKKLVRSVPTE 174 (221)
Q Consensus 98 eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~---~~~~v~Svp~E 174 (221)
+.|++++-.+... .|+.++..++-.+++ ||+.=|.+.+..|+.-| | |.... |-+.+.--|.+
T Consensus 12 ~yAlr~l~~La~~---~~~~~s~~~IA~~~~---------is~~~l~kil~~L~~aG--l-v~s~rG~~GGy~Lar~p~~ 76 (162)
T 3k69_A 12 SVAVHSILYLDAH---RDSKVASRELAQSLH---------LNPVMIRNILSVLHKHG--Y-LTGTVGKNGGYQLDLALAD 76 (162)
T ss_dssp HHHHHHHHHHHTT---TTSCBCHHHHHHHHT---------SCGGGTHHHHHHHHHTT--S-SEEECSTTCEEECCSCGGG
T ss_pred HHHHHHHHHHHhC---CCCCcCHHHHHHHHC---------cCHHHHHHHHHHHHHCC--C-EEeecCCCCCeEecCChhh
Confidence 4566777665542 367899999998866 89999999999998866 4 34443 34555566888
Q ss_pred cchhHHHHHHHHH
Q 027597 175 LNKDHNQILELAQ 187 (221)
Q Consensus 175 ls~D~~~vlel~~ 187 (221)
++--. |+++.+
T Consensus 77 Itl~d--Ii~ave 87 (162)
T 3k69_A 77 MNLGD--LYDLTI 87 (162)
T ss_dssp SBHHH--HHHHHS
T ss_pred CcHHH--HHHHHc
Confidence 88554 777666
No 359
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=21.07 E-value=85 Score=26.88 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=30.2
Q ss_pred CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCC
Q 027597 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGK 164 (221)
Q Consensus 115 GGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~ 164 (221)
|...++.+...++.+ ||++||.++++++- ...+.++.+|.
T Consensus 364 ~~~~~~~~~~~~i~~--------vt~~dv~~~a~~~~--~~~~~~~vvgp 403 (421)
T 3hdi_A 364 KKHRSLDEMIEQINA--------VQKQDVSRLAKILL--SASPSISLINA 403 (421)
T ss_dssp SCCCCHHHHHHHHHH--------CCHHHHHHHHHHHT--TSCCEEEEEES
T ss_pred CCCCCHHHHHHHHHc--------CCHHHHHHHHHHHc--ccCcEEEEECc
Confidence 344566777777776 99999999999876 55677777764
No 360
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=20.74 E-value=1.3e+02 Score=20.45 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=32.5
Q ss_pred HHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 027597 67 FHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRA 146 (221)
Q Consensus 67 F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rA 146 (221)
...+..+.||.-.... .-.. +-+|-|+-+..|..=-...- +-.|. ..|+.+||.-|
T Consensus 7 i~~iLk~~G~~~~~~~--v~~~---L~e~~~ry~~~il~dA~~~a-----------------~HAgr--ktv~~eDVkLA 62 (68)
T 1taf_A 7 IMSILKELNVQEYEPR--VVNQ---LLEFTFRYVTSILDDAKVYA-----------------NHARK--KTIDLDDVRLA 62 (68)
T ss_dssp HHHHHHHTTCCCBCTH--HHHH---HHHHHHHHHHHHHHHHHHHH-----------------HHTTC--SSBCHHHHHHH
T ss_pred HHHHHHHCCCcccCHH--HHHH---HHHHHHHHHHHHHHHHHHHH-----------------HHcCC--CCCCHHHHHHH
Confidence 5677778888532211 1011 23666666655544322222 22222 56999999999
Q ss_pred Hhh
Q 027597 147 ISK 149 (221)
Q Consensus 147 i~~ 149 (221)
|+.
T Consensus 63 i~~ 65 (68)
T 1taf_A 63 TEV 65 (68)
T ss_dssp HHH
T ss_pred HHh
Confidence 986
No 361
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=20.40 E-value=1.8e+02 Score=25.89 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcccccChhHHHHHHHHHH
Q 027597 43 RSQLEDFARKHKNDIRKNPTFRSQFHEMCA 72 (221)
Q Consensus 43 ~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~ 72 (221)
.++++.||.+= +||.+|+.|++||.
T Consensus 226 ~~a~e~~a~~~-----~d~~~~~~~~~i~~ 250 (365)
T 3fse_A 226 LEALEKYTEKE-----SDVEAKALFQEMIT 250 (365)
T ss_dssp HHHHHHHHHHC-----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHHH
Confidence 66777777653 59999999999885
No 362
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=20.32 E-value=2.2e+02 Score=24.29 Aligned_cols=94 Identities=18% Similarity=0.275 Sum_probs=60.6
Q ss_pred HHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhhcc--cCC-CcccHH
Q 027597 45 QLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRP--HNG-GLINLQ 121 (221)
Q Consensus 45 ~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~--~nG-Gli~l~ 121 (221)
.|..||+=-++++.=|--=|.+...||.-+|+-|..+. .=--|.|-.++.+|-..-+. .-| +=++..
T Consensus 81 eIl~vaklF~de~tLdnLsr~qLvaLck~m~L~p~gt~----------~~LR~rLr~rl~~I~~DDr~I~~EGV~sLs~~ 150 (249)
T 3skq_A 81 EISAIAQMFKNDSVLDNLSRPQLAAMSKFMSLRPFGND----------NMLRYQIRSKLKDIMNDDKTIDYEGVESLSQE 150 (249)
T ss_dssp HHHHHHTTSCHHHHHHHSCHHHHHHHHHHTTCCCCSSH----------HHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHH
T ss_pred HHHHHHHhcCCCcccccCCHHHHHHHHHHhCCCCCCCh----------HHHHHHHHHHHHHHHHhhHHHHHhCcccCCHH
Confidence 34555555555444333447788999999999986432 01125666666666655443 223 337888
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHhh
Q 027597 122 ELCNLLRQRRKSNREAVSEDDCLRAISK 149 (221)
Q Consensus 122 el~~~v~k~Rg~~~~~IS~~DI~rAi~~ 149 (221)
||... -..||+...-+|++++..-++.
T Consensus 151 ELr~A-C~~RGm~~~gls~e~LR~~L~~ 177 (249)
T 3skq_A 151 ELYQA-CVSRGMKAYGVSKEDLVDNLKV 177 (249)
T ss_dssp HHHHH-HHHTTCCCTTCCHHHHHHHHHH
T ss_pred HHHHH-HHHcCCCCCCCCHHHHHHHHHH
Confidence 88843 4568988788999999887765
No 363
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.22 E-value=1.8e+02 Score=19.14 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=35.9
Q ss_pred HHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccC
Q 027597 101 VQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG 154 (221)
Q Consensus 101 vqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG 154 (221)
..|+++... .+||-++..||+..+.+.. ..||..=|.|.++.|...|
T Consensus 20 ~~IL~~l~~---~~~~~~s~~el~~~l~~~~----~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 20 LKILEVLQE---PDNHHVSAEDLYKRLIDMG----EEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHHTS---GGGSSBCHHHHHHHHHHTT----CCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh---CCCCCCCHHHHHHHHHHhC----CCCCHhhHHHHHHHHHHCC
Confidence 456665543 2336799999999997642 3599999999999999877
No 364
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=20.18 E-value=38 Score=24.08 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=43.6
Q ss_pred hcccccChhHHHHHHHHHHHcCCCCCCCCCCcccc---ccCcc---------chHHHHHHHHHHHhhhhcccCCCcccHH
Q 027597 54 KNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAE---LLGIG---------DFYYELGVQIVEICLATRPHNGGLINLQ 121 (221)
Q Consensus 54 ~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~---~lG~g---------dfy~eLavqIvevC~~tr~~nGGli~l~ 121 (221)
.+....++..+..|...+..+|-| |.. .||++ ++-..+..|+.++...=+..+|.--++.
T Consensus 4 ~~~~~~~~~l~~~~~~ia~~lg~~--------Wk~Lar~Lg~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~~~g~~At~~ 75 (99)
T 1fad_A 4 MAAPPGEAYLQVAFDIVCDNVGRD--------WKRLARELKVSEAKMDGIEEKYPRSLSERVRESLKVWKNAEKKNASVA 75 (99)
T ss_dssp -CCCTTHHHHHHHHHHHHHHHHHH--------HHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGGSHH
T ss_pred CCCCCCcccHHHHHHHHHHHHhhh--------HHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHH
Confidence 334444556666677777777633 332 24442 3324566778888887777887777888
Q ss_pred HHHHHHHhh
Q 027597 122 ELCNLLRQR 130 (221)
Q Consensus 122 el~~~v~k~ 130 (221)
.|+..+.+.
T Consensus 76 ~L~~AL~~~ 84 (99)
T 1fad_A 76 GLVKALRTC 84 (99)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
Confidence 888888874
No 365
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=20.10 E-value=2.1e+02 Score=21.31 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=11.9
Q ss_pred cCCccHHHHHHhcC
Q 027597 189 QGFVTVDEVERRLS 202 (221)
Q Consensus 189 ~G~vt~~~L~~~l~ 202 (221)
.|+||.+++..-+.
T Consensus 123 ~G~I~~~El~~~l~ 136 (204)
T 3e3r_A 123 DGVVTVDDLRGVYS 136 (204)
T ss_dssp SSEECHHHHHHHCC
T ss_pred CCeEeHHHHHHHHc
Confidence 58999999998775
No 366
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=20.10 E-value=1.4e+02 Score=18.45 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=6.7
Q ss_pred CcccHHHHHHHHHh
Q 027597 116 GLINLQELCNLLRQ 129 (221)
Q Consensus 116 Gli~l~el~~~v~k 129 (221)
|.|+..|+...+..
T Consensus 22 G~i~~~el~~~l~~ 35 (76)
T 1qx2_A 22 NQISKEELKLVMQT 35 (76)
T ss_dssp TSEEHHHHHHHHHH
T ss_pred CeECHHHHHHHHHH
Confidence 45555555544443
No 367
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=20.09 E-value=1.5e+02 Score=22.23 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHh--cCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 183 LELAQA--QGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 183 lel~~~--~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
+.++.. .+.+|.++|++.++.++.-.+.+|..|.+
T Consensus 18 ~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~ 54 (143)
T 3t8r_A 18 ISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRN 54 (143)
T ss_dssp HHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344443 35799999999999999999999988865
No 368
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=20.07 E-value=2.4e+02 Score=21.34 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHH--------------HHcCCCCCC
Q 027597 30 LRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMC--------------AKVGVDPLA 80 (221)
Q Consensus 30 ~~~~~l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC--------------~siGVDPL~ 80 (221)
.-.+.|+..+..-.+...-|-+ ..+--+||.++..|++|+ ..+|-+|-.
T Consensus 11 ~~i~~Ln~Li~~~~D~~~gY~~--aae~~~d~~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p~~ 73 (153)
T 4etr_A 11 DTLDVLNDLLQTSKDGEAGFHA--CAEDLRDPQLKAAMLEQSRDCAAAADELERIVLELGGKPKD 73 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHhhHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3456677777777776666654 222236777777776654 567777763
No 369
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=20.01 E-value=1.7e+02 Score=22.69 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHh--cCCccHHHHHHhcCCCHHHHHHHHHHHHH
Q 027597 181 QILELAQA--QGFVTVDEVERRLSWTSGRAIDALDILLE 217 (221)
Q Consensus 181 ~vlel~~~--~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (221)
.++.+|.. .+.+|.++|++.++.++.-.+.+|..|.+
T Consensus 32 ~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~ 70 (159)
T 3lwf_A 32 ITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRN 70 (159)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Done!